0.012180
0.000000
0.000000
-0.000000
0.010371
0.000000
0.000000
-0.000000
0.017328
0.00000
0.00000
0.00000
Chaikuad, A.
Felletar, I.
Chung, C.W.
Drewry, D.
Chen, P.
Filippakopoulos, P.
Fedorov, O.
Krojer, T.
von Delft, F.
Arrowsmith, C.H.
Edwards, A.M.
Bountra, C.
Knapp, S.
Structural Genomics Consortium (SGC)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
82.100
96.420
57.710
C14 H12 N4 O
252.271
1-[7-amino-1-(pyrimidin-2-yl)indolizin-3-yl]ethanone
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C2 H6 O2
62.068
1,2-ETHANEDIOL
ETHYLENE GLYCOL
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C3 H8 O3
92.094
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
O
N
2
N
C
N
3
N
C
Y
4
N
C
Y
5
N
N
Y
6
N
C
Y
7
N
C
Y
8
N
C
N
9
N
N
Y
10
N
C
Y
11
N
C
Y
12
N
C
Y
13
N
C
Y
14
N
C
Y
15
N
N
Y
16
N
C
Y
17
N
C
Y
18
N
C
Y
19
N
N
N
20
N
H
N
21
N
H
N
22
N
H
N
23
N
H
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
N
N
33
S
C
N
34
N
C
N
35
N
O
N
36
N
C
N
37
N
O
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
H
N
42
N
H
N
43
N
H
N
44
N
H
N
45
N
N
N
46
S
C
N
47
N
C
N
48
N
O
N
49
N
C
N
50
N
C
N
51
N
C
N
52
N
N
N
53
N
C
N
54
N
N
N
55
N
N
N
56
N
O
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
N
N
73
S
C
N
74
N
C
N
75
N
O
N
76
N
C
N
77
N
C
N
78
N
O
N
79
N
N
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
N
N
90
S
C
N
91
N
C
N
92
N
O
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
O
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
N
N
106
R
C
N
107
N
C
N
108
N
O
N
109
N
C
N
110
N
S
N
111
N
O
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
C
N
120
N
O
N
121
N
C
N
122
N
O
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
N
N
130
S
C
N
131
N
C
N
132
N
O
N
133
N
C
N
134
N
C
N
135
N
C
N
136
N
O
N
137
N
N
N
138
N
O
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
N
N
150
S
C
N
151
N
C
N
152
N
O
N
153
N
C
N
154
N
C
N
155
N
C
N
156
N
O
N
157
N
O
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
N
N
169
N
C
N
170
N
C
N
171
N
O
N
172
N
O
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
C
N
179
N
O
N
180
N
C
N
181
N
O
N
182
N
C
N
183
N
O
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
N
N
193
S
C
N
194
N
C
N
195
N
O
N
196
N
C
Y
197
N
C
Y
198
N
N
Y
199
N
C
Y
200
N
C
Y
201
N
N
N
202
N
O
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
O
N
214
N
H
N
215
N
H
N
216
N
N
N
217
S
C
N
218
N
C
N
219
N
O
N
220
S
C
N
221
N
C
N
222
N
C
N
223
N
C
N
224
N
O
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
N
N
239
S
C
N
240
N
C
N
241
N
O
N
242
N
C
N
243
N
C
N
244
N
C
N
245
N
C
N
246
N
O
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
N
N
261
S
C
N
262
N
C
N
263
N
O
N
264
N
C
N
265
N
C
N
266
N
C
N
267
N
C
N
268
N
N
N
269
N
O
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
N
N
286
S
C
N
287
N
C
N
288
N
O
N
289
N
C
N
290
N
C
N
291
N
S
N
292
N
C
N
293
N
O
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
N
N
306
S
C
N
307
N
C
N
308
N
O
N
309
N
C
Y
310
N
C
Y
311
N
C
Y
312
N
C
Y
313
N
C
Y
314
N
C
Y
315
N
C
N
316
N
O
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
N
N
329
S
C
N
330
N
C
N
331
N
O
N
332
N
C
N
333
N
C
N
334
N
C
N
335
N
O
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
N
N
346
S
C
N
347
N
C
N
348
N
O
N
349
N
C
N
350
N
O
N
351
N
O
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
N
N
360
S
C
N
361
N
C
N
362
N
O
N
363
R
C
N
364
N
O
N
365
N
C
N
366
N
O
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
N
N
377
S
C
N
378
N
C
N
379
N
O
N
380
N
C
Y
381
N
C
Y
382
N
C
Y
383
N
C
Y
384
N
N
Y
385
N
C
Y
386
N
C
Y
387
N
C
Y
388
N
C
Y
389
N
C
N
390
N
O
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
N
N
404
S
C
N
405
N
C
N
406
N
O
N
407
N
C
Y
408
N
C
Y
409
N
C
Y
410
N
C
Y
411
N
C
Y
412
N
C
Y
413
N
C
N
414
N
O
N
415
N
O
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
N
N
428
S
C
N
429
N
C
N
430
N
O
N
431
N
C
N
432
N
C
N
433
N
C
N
434
N
O
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
Y
1
N
doub
Y
2
N
sing
Y
3
N
sing
N
4
N
sing
Y
5
N
doub
Y
6
N
sing
Y
7
N
doub
N
8
N
sing
Y
9
N
doub
Y
10
N
doub
N
11
N
sing
Y
12
N
sing
N
13
N
doub
Y
14
N
sing
Y
15
N
sing
Y
16
N
sing
Y
17
N
doub
Y
18
N
doub
Y
19
N
sing
N
20
N
sing
Y
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
doub
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
doub
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
doub
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
doub
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
doub
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
doub
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
doub
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
doub
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
doub
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
doub
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
doub
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
doub
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
Y
195
N
sing
Y
196
N
doub
Y
197
N
doub
N
198
N
sing
Y
199
N
sing
N
200
N
sing
Y
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
doub
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
doub
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
doub
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
doub
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
doub
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
Y
303
N
doub
Y
304
N
sing
Y
305
N
sing
N
306
N
sing
Y
307
N
doub
N
308
N
sing
Y
309
N
doub
N
310
N
sing
Y
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
doub
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
doub
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
doub
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
doub
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
Y
372
N
doub
Y
373
N
sing
Y
374
N
sing
N
375
N
sing
Y
376
N
doub
Y
377
N
sing
Y
378
N
sing
N
379
N
sing
Y
380
N
sing
Y
381
N
doub
N
382
N
sing
Y
383
N
doub
N
384
N
sing
Y
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
doub
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
Y
400
N
doub
Y
401
N
sing
Y
402
N
sing
N
403
N
sing
Y
404
N
doub
N
405
N
sing
Y
406
N
doub
N
407
N
sing
Y
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
doub
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
US
J.Med.Chem.
JMCMAR
0151
0022-2623
59
1410
1424
10.1021/acs.jmedchem.5b00209
25799074
Discovery and Characterization of GSK2801, a Selective Chemical Probe for the Bromodomains BAZ2A and BAZ2B.
2016
10.2210/pdb4ir3/pdb
pdb_00004ir3
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100.0
1
IMAGE PLATE
2011-09-23
RIGAKU RAXIS IV
Flat graphite crystal
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU FR-E SUPERBRIGHT
13618.652
Bromodomain adjacent to zinc finger domain protein 2B
Bromodomain (residues 2054-2168)
1
man
polymer
62.068
1,2-ETHANEDIOL
3
syn
non-polymer
92.094
GLYCEROL
2
syn
non-polymer
252.271
1-[7-amino-1-(pyrimidin-2-yl)indolizin-3-yl]ethanone
1
syn
non-polymer
18.015
water
146
nat
water
hWALp4
no
no
SMSVKKPKRDDSKDLALCSMILTEMETHEDAWPFLLPVNLKLVPGYKKVIKKPMDFSTIREKLSSGQYPNLETFALDVRL
VFDNCETFNEDDSDIGRAGHNMRKYFEKKWTDTFKVS
SMSVKKPKRDDSKDLALCSMILTEMETHEDAWPFLLPVNLKLVPGYKKVIKKPMDFSTIREKLSSGQYPNLETFALDVRL
VFDNCETFNEDDSDIGRAGHNMRKYFEKKWTDTFKVS
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
sample
BAZ2B, KIAA1476
9606
Homo sapiens
469008
Escherichia coli
BL21(DE3)-R3
plasmid
pNIC28-BSA4
1
4.19
70.67
VAPOR DIFFUSION, SITTING DROP
7.0
18% PEG 1000, 17% glycerol, 0.1M HEPES pH 7.0 (Ligand soaking performed in low-molecular-weight PEG smears stabilizing solution), VAPOR DIFFUSION, SITTING DROP, temperature 277.15K
277.15
Structural Genomics Consortium
SGC
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_ref_seq_dif
struct_site
repository
Initial release
Database references
Database references
Database references
Database references
Database references
Data collection
Database references
Derived calculations
Refinement description
1
0
2013-01-23
1
1
2015-04-15
1
2
2015-04-22
1
3
2015-09-09
1
4
2015-10-21
1
5
2016-04-20
1
6
2023-09-20
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Y
RCSB
Y
RCSB
2013-01-14
REL
REL
EDO
1,2-ETHANEDIOL
GOL
GLYCEROL
1FK
1-[7-amino-1-(pyrimidin-2-yl)indolizin-3-yl]ethanone
HOH
water
THE SEQUENCE IN THIS ENTRY CORRESPONDS TO ISOFORM Q9UIF8-4
3G0L
PDB entry 3G0L
PDB
experimental model
EDO
1
2
EDO
EDO
2001
A
EDO
3
2
EDO
EDO
2002
A
EDO
4
2
EDO
EDO
2003
A
GOL
10
3
GOL
GOL
2004
A
GOL
11
3
GOL
GOL
2005
A
1FK
1
4
1FK
1FK
2006
A
HOH
1
5
HOH
HOH
2101
A
HOH
2
5
HOH
HOH
2102
A
HOH
3
5
HOH
HOH
2103
A
HOH
4
5
HOH
HOH
2104
A
HOH
5
5
HOH
HOH
2105
A
HOH
6
5
HOH
HOH
2106
A
HOH
8
5
HOH
HOH
2107
A
HOH
9
5
HOH
HOH
2108
A
HOH
10
5
HOH
HOH
2109
A
HOH
12
5
HOH
HOH
2110
A
HOH
13
5
HOH
HOH
2111
A
HOH
14
5
HOH
HOH
2112
A
HOH
15
5
HOH
HOH
2113
A
HOH
16
5
HOH
HOH
2114
A
HOH
17
5
HOH
HOH
2115
A
HOH
18
5
HOH
HOH
2116
A
HOH
19
5
HOH
HOH
2117
A
HOH
20
5
HOH
HOH
2118
A
HOH
21
5
HOH
HOH
2119
A
HOH
22
5
HOH
HOH
2120
A
HOH
23
5
HOH
HOH
2121
A
HOH
24
5
HOH
HOH
2122
A
HOH
25
5
HOH
HOH
2123
A
HOH
26
5
HOH
HOH
2124
A
HOH
27
5
HOH
HOH
2125
A
HOH
28
5
HOH
HOH
2126
A
HOH
29
5
HOH
HOH
2127
A
HOH
30
5
HOH
HOH
2128
A
HOH
31
5
HOH
HOH
2129
A
HOH
32
5
HOH
HOH
2130
A
HOH
33
5
HOH
HOH
2131
A
HOH
34
5
HOH
HOH
2132
A
HOH
35
5
HOH
HOH
2133
A
HOH
36
5
HOH
HOH
2134
A
HOH
37
5
HOH
HOH
2135
A
HOH
38
5
HOH
HOH
2136
A
HOH
39
5
HOH
HOH
2137
A
HOH
40
5
HOH
HOH
2138
A
HOH
41
5
HOH
HOH
2139
A
HOH
42
5
HOH
HOH
2140
A
HOH
43
5
HOH
HOH
2141
A
HOH
44
5
HOH
HOH
2142
A
HOH
45
5
HOH
HOH
2143
A
HOH
46
5
HOH
HOH
2144
A
HOH
47
5
HOH
HOH
2145
A
HOH
48
5
HOH
HOH
2146
A
HOH
49
5
HOH
HOH
2147
A
HOH
50
5
HOH
HOH
2148
A
HOH
51
5
HOH
HOH
2149
A
HOH
53
5
HOH
HOH
2150
A
HOH
54
5
HOH
HOH
2151
A
HOH
55
5
HOH
HOH
2152
A
HOH
56
5
HOH
HOH
2153
A
HOH
57
5
HOH
HOH
2154
A
HOH
58
5
HOH
HOH
2155
A
HOH
59
5
HOH
HOH
2156
A
HOH
60
5
HOH
HOH
2157
A
HOH
61
5
HOH
HOH
2158
A
HOH
62
5
HOH
HOH
2159
A
HOH
63
5
HOH
HOH
2160
A
HOH
64
5
HOH
HOH
2161
A
HOH
65
5
HOH
HOH
2162
A
HOH
66
5
HOH
HOH
2163
A
HOH
67
5
HOH
HOH
2164
A
HOH
68
5
HOH
HOH
2165
A
HOH
69
5
HOH
HOH
2166
A
HOH
72
5
HOH
HOH
2167
A
HOH
73
5
HOH
HOH
2168
A
HOH
74
5
HOH
HOH
2169
A
HOH
75
5
HOH
HOH
2170
A
HOH
76
5
HOH
HOH
2171
A
HOH
77
5
HOH
HOH
2172
A
HOH
78
5
HOH
HOH
2173
A
HOH
79
5
HOH
HOH
2174
A
HOH
81
5
HOH
HOH
2175
A
HOH
82
5
HOH
HOH
2176
A
HOH
83
5
HOH
HOH
2177
A
HOH
84
5
HOH
HOH
2178
A
HOH
86
5
HOH
HOH
2179
A
HOH
87
5
HOH
HOH
2180
A
HOH
88
5
HOH
HOH
2181
A
HOH
89
5
HOH
HOH
2182
A
HOH
90
5
HOH
HOH
2183
A
HOH
91
5
HOH
HOH
2184
A
HOH
92
5
HOH
HOH
2185
A
HOH
93
5
HOH
HOH
2186
A
HOH
94
5
HOH
HOH
2187
A
HOH
95
5
HOH
HOH
2188
A
HOH
96
5
HOH
HOH
2189
A
HOH
97
5
HOH
HOH
2190
A
HOH
98
5
HOH
HOH
2191
A
HOH
99
5
HOH
HOH
2192
A
HOH
100
5
HOH
HOH
2193
A
HOH
101
5
HOH
HOH
2194
A
HOH
102
5
HOH
HOH
2195
A
HOH
103
5
HOH
HOH
2196
A
HOH
104
5
HOH
HOH
2197
A
HOH
105
5
HOH
HOH
2198
A
HOH
106
5
HOH
HOH
2199
A
HOH
107
5
HOH
HOH
2200
A
HOH
108
5
HOH
HOH
2201
A
HOH
109
5
HOH
HOH
2202
A
HOH
110
5
HOH
HOH
2203
A
HOH
111
5
HOH
HOH
2204
A
HOH
112
5
HOH
HOH
2205
A
HOH
113
5
HOH
HOH
2206
A
HOH
114
5
HOH
HOH
2207
A
HOH
115
5
HOH
HOH
2208
A
HOH
116
5
HOH
HOH
2209
A
HOH
117
5
HOH
HOH
2210
A
HOH
118
5
HOH
HOH
2211
A
HOH
119
5
HOH
HOH
2212
A
HOH
120
5
HOH
HOH
2213
A
HOH
121
5
HOH
HOH
2214
A
HOH
122
5
HOH
HOH
2215
A
HOH
123
5
HOH
HOH
2216
A
HOH
124
5
HOH
HOH
2217
A
HOH
125
5
HOH
HOH
2218
A
HOH
126
5
HOH
HOH
2219
A
HOH
127
5
HOH
HOH
2220
A
HOH
128
5
HOH
HOH
2221
A
HOH
129
5
HOH
HOH
2222
A
HOH
130
5
HOH
HOH
2223
A
HOH
131
5
HOH
HOH
2224
A
HOH
132
5
HOH
HOH
2225
A
HOH
133
5
HOH
HOH
2226
A
HOH
134
5
HOH
HOH
2227
A
HOH
135
5
HOH
HOH
2228
A
HOH
136
5
HOH
HOH
2229
A
HOH
137
5
HOH
HOH
2230
A
HOH
138
5
HOH
HOH
2231
A
HOH
139
5
HOH
HOH
2232
A
HOH
140
5
HOH
HOH
2233
A
HOH
141
5
HOH
HOH
2234
A
HOH
142
5
HOH
HOH
2235
A
HOH
143
5
HOH
HOH
2236
A
HOH
144
5
HOH
HOH
2237
A
HOH
145
5
HOH
HOH
2238
A
HOH
146
5
HOH
HOH
2239
A
HOH
147
5
HOH
HOH
2240
A
HOH
148
5
HOH
HOH
2241
A
HOH
149
5
HOH
HOH
2242
A
HOH
150
5
HOH
HOH
2243
A
HOH
151
5
HOH
HOH
2244
A
HOH
152
5
HOH
HOH
2245
A
HOH
153
5
HOH
HOH
2246
A
SER
1856
n
1
SER
1856
A
MET
1857
n
2
MET
1857
A
SER
1858
n
3
SER
1858
A
VAL
1859
n
4
VAL
1859
A
LYS
1860
n
5
LYS
1860
A
LYS
1861
n
6
LYS
1861
A
PRO
1862
n
7
PRO
1862
A
LYS
1863
n
8
LYS
1863
A
ARG
1864
n
9
ARG
1864
A
ASP
1865
n
10
ASP
1865
A
ASP
1866
n
11
ASP
1866
A
SER
1867
n
12
SER
1867
A
LYS
1868
n
13
LYS
1868
A
ASP
1869
n
14
ASP
1869
A
LEU
1870
n
15
LEU
1870
A
ALA
1871
n
16
ALA
1871
A
LEU
1872
n
17
LEU
1872
A
CYS
1873
n
18
CYS
1873
A
SER
1874
n
19
SER
1874
A
MET
1875
n
20
MET
1875
A
ILE
1876
n
21
ILE
1876
A
LEU
1877
n
22
LEU
1877
A
THR
1878
n
23
THR
1878
A
GLU
1879
n
24
GLU
1879
A
MET
1880
n
25
MET
1880
A
GLU
1881
n
26
GLU
1881
A
THR
1882
n
27
THR
1882
A
HIS
1883
n
28
HIS
1883
A
GLU
1884
n
29
GLU
1884
A
ASP
1885
n
30
ASP
1885
A
ALA
1886
n
31
ALA
1886
A
TRP
1887
n
32
TRP
1887
A
PRO
1888
n
33
PRO
1888
A
PHE
1889
n
34
PHE
1889
A
LEU
1890
n
35
LEU
1890
A
LEU
1891
n
36
LEU
1891
A
PRO
1892
n
37
PRO
1892
A
VAL
1893
n
38
VAL
1893
A
ASN
1894
n
39
ASN
1894
A
LEU
1895
n
40
LEU
1895
A
LYS
1896
n
41
LYS
1896
A
LEU
1897
n
42
LEU
1897
A
VAL
1898
n
43
VAL
1898
A
PRO
1899
n
44
PRO
1899
A
GLY
1900
n
45
GLY
1900
A
TYR
1901
n
46
TYR
1901
A
LYS
1902
n
47
LYS
1902
A
LYS
1903
n
48
LYS
1903
A
VAL
1904
n
49
VAL
1904
A
ILE
1905
n
50
ILE
1905
A
LYS
1906
n
51
LYS
1906
A
LYS
1907
n
52
LYS
1907
A
PRO
1908
n
53
PRO
1908
A
MET
1909
n
54
MET
1909
A
ASP
1910
n
55
ASP
1910
A
PHE
1911
n
56
PHE
1911
A
SER
1912
n
57
SER
1912
A
THR
1913
n
58
THR
1913
A
ILE
1914
n
59
ILE
1914
A
ARG
1915
n
60
ARG
1915
A
GLU
1916
n
61
GLU
1916
A
LYS
1917
n
62
LYS
1917
A
LEU
1918
n
63
LEU
1918
A
SER
1919
n
64
SER
1919
A
SER
1920
n
65
SER
1920
A
GLY
1921
n
66
GLY
1921
A
GLN
1922
n
67
GLN
1922
A
TYR
1923
n
68
TYR
1923
A
PRO
1924
n
69
PRO
1924
A
ASN
1925
n
70
ASN
1925
A
LEU
1926
n
71
LEU
1926
A
GLU
1927
n
72
GLU
1927
A
THR
1928
n
73
THR
1928
A
PHE
1929
n
74
PHE
1929
A
ALA
1930
n
75
ALA
1930
A
LEU
1931
n
76
LEU
1931
A
ASP
1932
n
77
ASP
1932
A
VAL
1933
n
78
VAL
1933
A
ARG
1934
n
79
ARG
1934
A
LEU
1935
n
80
LEU
1935
A
VAL
1936
n
81
VAL
1936
A
PHE
1937
n
82
PHE
1937
A
ASP
1938
n
83
ASP
1938
A
ASN
1939
n
84
ASN
1939
A
CYS
1940
n
85
CYS
1940
A
GLU
1941
n
86
GLU
1941
A
THR
1942
n
87
THR
1942
A
PHE
1943
n
88
PHE
1943
A
ASN
1944
n
89
ASN
1944
A
GLU
1945
n
90
GLU
1945
A
ASP
1946
n
91
ASP
1946
A
ASP
1947
n
92
ASP
1947
A
SER
1948
n
93
SER
1948
A
ASP
1949
n
94
ASP
1949
A
ILE
1950
n
95
ILE
1950
A
GLY
1951
n
96
GLY
1951
A
ARG
1952
n
97
ARG
1952
A
ALA
1953
n
98
ALA
1953
A
GLY
1954
n
99
GLY
1954
A
HIS
1955
n
100
HIS
1955
A
ASN
1956
n
101
ASN
1956
A
MET
1957
n
102
MET
1957
A
ARG
1958
n
103
ARG
1958
A
LYS
1959
n
104
LYS
1959
A
TYR
1960
n
105
TYR
1960
A
PHE
1961
n
106
PHE
1961
A
GLU
1962
n
107
GLU
1962
A
LYS
1963
n
108
LYS
1963
A
LYS
1964
n
109
LYS
1964
A
TRP
1965
n
110
TRP
1965
A
THR
1966
n
111
THR
1966
A
ASP
1967
n
112
ASP
1967
A
THR
1968
n
113
THR
1968
A
PHE
1969
n
114
PHE
1969
A
LYS
1970
n
115
LYS
1970
A
VAL
1971
n
116
VAL
1971
A
n
117
1972
A
19.9069
-1.6698
6.0995
0.1979
-0.5075
1.8731
-0.2327
-0.4426
1.3864
0.1174
-0.1418
-0.1656
-0.0315
-0.1192
0.3745
0.3081
-0.1694
-0.0430
0.6315
-0.0897
0.3166
refined
-4.1716
33.2294
-9.5254
X-RAY DIFFRACTION
3.9154
-1.6870
0.6040
3.9444
-0.9205
3.0150
-0.0174
-0.0177
0.1844
0.0800
0.0157
-0.1853
0.0663
-0.0591
0.0017
0.0054
-0.0012
-0.0042
0.0027
-0.0003
0.0132
refined
20.6691
17.4054
-1.9542
X-RAY DIFFRACTION
2.0029
4.1710
5.7176
20.2552
2.8218
23.4677
-0.0138
-0.2241
0.2402
1.0980
-0.0047
1.2964
-0.9122
-1.0033
0.0186
0.2041
0.1102
-0.0132
0.1720
-0.0248
0.2580
refined
11.5005
30.0007
3.3907
X-RAY DIFFRACTION
A
1856
A
1866
X-RAY DIFFRACTION
1
A
1867
A
1963
X-RAY DIFFRACTION
2
A
1964
A
1971
X-RAY DIFFRACTION
3
author_and_software_defined_assembly
PISA
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
HOH
2170
H
HOH
1
A
CG
LYS
1860
A
CG
LYS
5
1
Y
1
A
CD
LYS
1860
A
CD
LYS
5
1
Y
1
A
CE
LYS
1860
A
CE
LYS
5
1
Y
1
A
NZ
LYS
1860
A
NZ
LYS
5
1
Y
1
A
CG
LYS
1863
A
CG
LYS
8
1
Y
1
A
CD
LYS
1863
A
CD
LYS
8
1
Y
1
A
CE
LYS
1863
A
CE
LYS
8
1
Y
1
A
NZ
LYS
1863
A
NZ
LYS
8
1
Y
1
A
CG1
VAL
1971
A
CG1
VAL
116
1
Y
1
A
CG2
VAL
1971
A
CG2
VAL
116
1
Y
1
A
SER
1972
A
SER
117
1
Y
1
-12.48
1.60
100.20
87.72
A
A
A
CG
SD
CE
MET
MET
MET
1880
1880
1880
N
1
A
LYS
1970
-65.82
-80.62
39.986
1.88
0.00
-0.00
-0.82
-0.00
-1.06
0.928
0.917
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.24550
0.20953
0.21126
2.00
27.48
790
15847
15057
5.0
99.95
6.089
0.096
RANDOM
1
THROUGHOUT
0.0
2.0
MOLECULAR REPLACEMENT
0.140
0.137
0.80
0.80
1.20
PDB entry 3G0L
MAXIMUM LIKELIHOOD
MASK
0.250
2.00
27.48
146
1126
43
0
937
0.016
0.020
1010
0.001
0.020
961
1.593
2.004
1352
0.785
3.000
2226
6.262
5.000
117
33.492
24.545
44
13.311
15.000
183
18.697
15.000
5
0.091
0.200
144
0.009
0.021
1083
0.001
0.020
215
0.300
0.273
2.052
56
1103
20
100.00
33.5
2.00
29.51
4IR3
15860
15847
0.0
0.0
0.088
1
11.0
5.0
100.0
0.673
2.00
2.11
2.2
2283
1
5.0
100.0
data collection
CrystalClear
phasing
PHASER
refinement
REFMAC
5.7.0032
data reduction
MOSFLM
data scaling
SCALA
Crystal Structure of the bromodomain of human BAZ2B in complex with 1-[7-amino-1-(pyrimidin-2-yl)indolizin-3-yl]ethanone (GSK2833282A)
1
N
N
2
N
N
2
N
N
2
N
N
3
N
N
3
N
N
4
N
N
5
N
N
A
LYS
1868
A
LYS
13
HELX_P
A
HIS
1883
A
HIS
28
1
1
16
A
GLU
1884
A
GLU
29
HELX_P
A
LEU
1890
A
LEU
35
5
2
7
A
GLY
1900
A
GLY
45
HELX_P
A
ILE
1905
A
ILE
50
1
3
6
A
ASP
1910
A
ASP
55
HELX_P
A
SER
1920
A
SER
65
1
4
11
A
ASN
1925
A
ASN
70
HELX_P
A
ASN
1944
A
ASN
89
1
5
20
A
SER
1948
A
SER
93
HELX_P
A
LYS
1970
A
LYS
115
1
6
23
TRANSCRIPTION
SGC, Structural Genomics Consortium, TRANSCRIPTION, bromodomain, acetylated lysine binding protein, KIAA1476, WALp4
BAZ2B_HUMAN
UNP
1
2054
Q9UIF8
SVKKPKRDDSKDLALCSMILTEMETHEDAWPFLLPVNLKLVPGYKKVIKKPMDFSTIREKLSSGQYPNLETFALDVRLVF
DNCETFNEDDSDIGRAGHNMRKYFEKKWTDTFKVS
2054
2168
4IR3
1858
1972
Q9UIF8
A
1
3
117
1
expression tag
SER
1856
4IR3
A
Q9UIF8
UNP
1
1
expression tag
MET
1857
4IR3
A
Q9UIF8
UNP
2
BINDING SITE FOR RESIDUE EDO A 2001
A
EDO
2001
Software
8
BINDING SITE FOR RESIDUE EDO A 2002
A
EDO
2002
Software
6
BINDING SITE FOR RESIDUE EDO A 2003
A
EDO
2003
Software
3
BINDING SITE FOR RESIDUE GOL A 2004
A
GOL
2004
Software
6
BINDING SITE FOR RESIDUE GOL A 2005
A
GOL
2005
Software
4
BINDING SITE FOR RESIDUE 1FK A 2006
A
1FK
2006
Software
7
A
LYS
1917
A
LYS
62
8
1_555
A
GLN
1922
A
GLN
67
8
1_555
A
PRO
1924
A
PRO
69
8
1_555
A
THR
1928
A
THR
73
8
1_555
A
ASP
1932
A
ASP
77
8
1_555
A
HOH
2177
H
HOH
8
1_555
A
HOH
2207
H
HOH
8
1_555
A
HOH
2208
H
HOH
8
1_555
A
LYS
1902
A
LYS
47
6
4_555
A
GLU
1945
A
GLU
90
6
1_555
A
ASP
1947
A
ASP
92
6
1_555
A
HOH
2178
H
HOH
6
1_555
A
HOH
2221
H
HOH
6
1_555
A
HOH
2222
H
HOH
6
1_555
A
LYS
1903
A
LYS
48
3
4_555
A
GLU
1945
A
GLU
90
3
1_555
A
ASP
1946
A
ASP
91
3
1_555
A
LYS
1906
A
LYS
51
6
1_555
A
LYS
1907
A
LYS
52
6
1_555
A
PRO
1908
A
PRO
53
6
1_555
A
HOH
2159
H
HOH
6
1_555
A
HOH
2194
H
HOH
6
1_555
A
HOH
2233
H
HOH
6
1_555
A
THR
1882
A
THR
27
4
1_555
A
HIS
1883
A
HIS
28
4
1_555
A
GLU
1884
A
GLU
29
4
1_555
A
HOH
2220
H
HOH
4
1_555
A
TRP
1887
A
TRP
32
7
1_555
A
PRO
1888
A
PRO
33
7
1_555
A
ASN
1944
A
ASN
89
7
1_555
A
ILE
1950
A
ILE
95
7
1_555
A
HOH
2176
H
HOH
7
1_555
A
HOH
2224
H
HOH
7
1_555
A
HOH
2229
H
HOH
7
1_555
20
C 2 2 21