0.010480
0.000000
0.000000
0.000000
0.010480
0.000000
0.000000
0.000000
0.008540
0.000000
0.000000
0.000000
Wei, A.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.000
90.000
90.000
95.420
95.420
117.100
C24 H31 Cl N6 O2
470.995
(6S)-N-(4-carbamimidoylbenzyl)-1-chloro-3-(cyclobutylamino)-8,8-diethyl-4-oxo-4,6,7,8-tetrahydropyrrolo[1,2-a]pyrazine-6-carboxamide
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Ca 2
40.078
CALCIUM ION
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
UK
Bioorg.Med.Chem.Lett.
BMCLE8
1127
0960-894X
23
1604
1607
10.1016/j.bmcl.2013.01.094
23416003
Design and synthesis of bicyclic pyrazinone and pyrimidinone amides as potent TF-FVIIa inhibitors.
2013
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
100.0
1
CCD
2002-04-26
MAR CCD 165 mm
SINGLE WAVELENGTH
M
x-ray
1
1.0
1.0
17-BM
APS
1.0
1.0
SYNCHROTRON
APS BEAMLINE 17-BM
28103.256
Factor VII heavy chain
3.4.21.21
1
man
polymer
6030.827
Factor VII light chain
3.4.21.21
UNP residues 150-204
1
man
polymer
470.995
(6S)-N-(4-carbamimidoylbenzyl)-1-chloro-3-(cyclobutylamino)-8,8-diethyl-4-oxo-4,6,7,8-tetrahydropyrrolo[1,2-a]pyrazine-6-carboxamide
1
syn
non-polymer
40.078
CALCIUM ION
1
syn
non-polymer
18.015
water
220
nat
water
no
no
IVGGKVCPKGECPWQVLLLVNGAQLCGGTLINTIWVVSAAHCFDKIKNWRNLIAVLGEHDLSEHDGDEQSRRVAQVIIPS
TYVPGTTNHDIALLRLHQPVVLTDHVVPLCLPERTFSERTLAFVRFSLVSGWGQLLDRGATALELMVLNVPRLMTQDCLQ
QSRKVGDSPNITEYMFCAGYSDGSKDSCKGDSGGPHATHYRGTWYLTGIVSWGQGCATVGHFGVYTRVSQYIEWLQKLMR
SEPRPGVLLRAPFP
IVGGKVCPKGECPWQVLLLVNGAQLCGGTLINTIWVVSAAHCFDKIKNWRNLIAVLGEHDLSEHDGDEQSRRVAQVIIPS
TYVPGTTNHDIALLRLHQPVVLTDHVVPLCLPERTFSERTLAFVRFSLVSGWGQLLDRGATALELMVLNVPRLMTQDCLQ
QSRKVGDSPNITEYMFCAGYSDGSKDSCKGDSGGPHATHYRGTWYLTGIVSWGQGCATVGHFGVYTRVSQYIEWLQKLMR
SEPRPGVLLRAPFP
H
polypeptide(L)
no
no
ICVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTPTVEYPCGKIPILEKR
ICVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTPTVEYPCGKIPILEKR
L
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
sample
F7
9606
Homo sapiens
10026
Cricetinae
human
sample
F7
9606
Homo sapiens
10026
Cricetinae
1
3.90
68.50
VAPOR DIFFUSION, HANGING DROP
6.0
100 mM MES, pH 6.0, 20 mM CACL2, 17.5%(W/V) PEG 6000, vapor diffusion, hanging drop, temperature 277K
277
repository
Initial release
Database references
1
0
2013-02-27
1
1
2013-03-06
RCSB
Y
RCSB
2013-01-16
REL
REL
1GG
(6S)-N-(4-carbamimidoylbenzyl)-1-chloro-3-(cyclobutylamino)-8,8-diethyl-4-oxo-4,6,7,8-tetrahydropyrrolo[1,2-a]pyrazine-6-carboxamide
CA
CALCIUM ION
HOH
water
1GG
1
3
1GG
1GG
301
H
CA
351
4
CA
CA
302
H
HOH
401
5
HOH
HOH
401
H
HOH
402
5
HOH
HOH
402
H
HOH
403
5
HOH
HOH
403
H
HOH
404
5
HOH
HOH
404
H
HOH
405
5
HOH
HOH
405
H
HOH
406
5
HOH
HOH
406
H
HOH
407
5
HOH
HOH
407
H
HOH
408
5
HOH
HOH
408
H
HOH
409
5
HOH
HOH
409
H
HOH
410
5
HOH
HOH
410
H
HOH
411
5
HOH
HOH
411
H
HOH
412
5
HOH
HOH
412
H
HOH
413
5
HOH
HOH
413
H
HOH
414
5
HOH
HOH
414
H
HOH
415
5
HOH
HOH
415
H
HOH
416
5
HOH
HOH
416
H
HOH
417
5
HOH
HOH
417
H
HOH
418
5
HOH
HOH
418
H
HOH
420
5
HOH
HOH
419
H
HOH
422
5
HOH
HOH
420
H
HOH
423
5
HOH
HOH
421
H
HOH
424
5
HOH
HOH
422
H
HOH
425
5
HOH
HOH
423
H
HOH
426
5
HOH
HOH
424
H
HOH
429
5
HOH
HOH
425
H
HOH
430
5
HOH
HOH
426
H
HOH
432
5
HOH
HOH
427
H
HOH
433
5
HOH
HOH
428
H
HOH
434
5
HOH
HOH
429
H
HOH
435
5
HOH
HOH
430
H
HOH
436
5
HOH
HOH
431
H
HOH
437
5
HOH
HOH
432
H
HOH
438
5
HOH
HOH
433
H
HOH
439
5
HOH
HOH
434
H
HOH
440
5
HOH
HOH
435
H
HOH
441
5
HOH
HOH
436
H
HOH
442
5
HOH
HOH
437
H
HOH
443
5
HOH
HOH
438
H
HOH
444
5
HOH
HOH
439
H
HOH
446
5
HOH
HOH
440
H
HOH
447
5
HOH
HOH
441
H
HOH
448
5
HOH
HOH
442
H
HOH
451
5
HOH
HOH
443
H
HOH
452
5
HOH
HOH
444
H
HOH
453
5
HOH
HOH
445
H
HOH
454
5
HOH
HOH
446
H
HOH
456
5
HOH
HOH
447
H
HOH
457
5
HOH
HOH
448
H
HOH
459
5
HOH
HOH
449
H
HOH
460
5
HOH
HOH
450
H
HOH
461
5
HOH
HOH
451
H
HOH
464
5
HOH
HOH
452
H
HOH
465
5
HOH
HOH
453
H
HOH
466
5
HOH
HOH
454
H
HOH
467
5
HOH
HOH
455
H
HOH
468
5
HOH
HOH
456
H
HOH
470
5
HOH
HOH
457
H
HOH
471
5
HOH
HOH
458
H
HOH
472
5
HOH
HOH
459
H
HOH
474
5
HOH
HOH
460
H
HOH
477
5
HOH
HOH
461
H
HOH
478
5
HOH
HOH
462
H
HOH
479
5
HOH
HOH
463
H
HOH
480
5
HOH
HOH
464
H
HOH
481
5
HOH
HOH
465
H
HOH
482
5
HOH
HOH
466
H
HOH
483
5
HOH
HOH
467
H
HOH
484
5
HOH
HOH
468
H
HOH
486
5
HOH
HOH
469
H
HOH
487
5
HOH
HOH
470
H
HOH
488
5
HOH
HOH
471
H
HOH
489
5
HOH
HOH
472
H
HOH
490
5
HOH
HOH
473
H
HOH
492
5
HOH
HOH
474
H
HOH
493
5
HOH
HOH
475
H
HOH
495
5
HOH
HOH
476
H
HOH
496
5
HOH
HOH
477
H
HOH
499
5
HOH
HOH
478
H
HOH
501
5
HOH
HOH
479
H
HOH
503
5
HOH
HOH
480
H
HOH
504
5
HOH
HOH
481
H
HOH
505
5
HOH
HOH
482
H
HOH
506
5
HOH
HOH
483
H
HOH
507
5
HOH
HOH
484
H
HOH
508
5
HOH
HOH
485
H
HOH
509
5
HOH
HOH
486
H
HOH
510
5
HOH
HOH
487
H
HOH
511
5
HOH
HOH
488
H
HOH
512
5
HOH
HOH
489
H
HOH
513
5
HOH
HOH
490
H
HOH
514
5
HOH
HOH
491
H
HOH
515
5
HOH
HOH
492
H
HOH
516
5
HOH
HOH
493
H
HOH
517
5
HOH
HOH
494
H
HOH
518
5
HOH
HOH
495
H
HOH
519
5
HOH
HOH
496
H
HOH
521
5
HOH
HOH
497
H
HOH
522
5
HOH
HOH
498
H
HOH
523
5
HOH
HOH
499
H
HOH
525
5
HOH
HOH
500
H
HOH
526
5
HOH
HOH
501
H
HOH
527
5
HOH
HOH
502
H
HOH
528
5
HOH
HOH
503
H
HOH
529
5
HOH
HOH
504
H
HOH
530
5
HOH
HOH
505
H
HOH
531
5
HOH
HOH
506
H
HOH
533
5
HOH
HOH
507
H
HOH
534
5
HOH
HOH
508
H
HOH
537
5
HOH
HOH
509
H
HOH
539
5
HOH
HOH
510
H
HOH
540
5
HOH
HOH
511
H
HOH
541
5
HOH
HOH
512
H
HOH
542
5
HOH
HOH
513
H
HOH
543
5
HOH
HOH
514
H
HOH
545
5
HOH
HOH
515
H
HOH
546
5
HOH
HOH
516
H
HOH
547
5
HOH
HOH
517
H
HOH
548
5
HOH
HOH
518
H
HOH
549
5
HOH
HOH
519
H
HOH
551
5
HOH
HOH
520
H
HOH
552
5
HOH
HOH
521
H
HOH
553
5
HOH
HOH
522
H
HOH
555
5
HOH
HOH
523
H
HOH
556
5
HOH
HOH
524
H
HOH
557
5
HOH
HOH
525
H
HOH
558
5
HOH
HOH
526
H
HOH
561
5
HOH
HOH
527
H
HOH
562
5
HOH
HOH
528
H
HOH
564
5
HOH
HOH
529
H
HOH
565
5
HOH
HOH
530
H
HOH
566
5
HOH
HOH
531
H
HOH
567
5
HOH
HOH
532
H
HOH
568
5
HOH
HOH
533
H
HOH
569
5
HOH
HOH
534
H
HOH
570
5
HOH
HOH
535
H
HOH
571
5
HOH
HOH
536
H
HOH
572
5
HOH
HOH
537
H
HOH
574
5
HOH
HOH
538
H
HOH
575
5
HOH
HOH
539
H
HOH
579
5
HOH
HOH
540
H
HOH
580
5
HOH
HOH
541
H
HOH
581
5
HOH
HOH
542
H
HOH
585
5
HOH
HOH
543
H
HOH
591
5
HOH
HOH
544
H
HOH
593
5
HOH
HOH
545
H
HOH
594
5
HOH
HOH
546
H
HOH
596
5
HOH
HOH
547
H
HOH
597
5
HOH
HOH
548
H
HOH
598
5
HOH
HOH
549
H
HOH
600
5
HOH
HOH
550
H
HOH
602
5
HOH
HOH
551
H
HOH
605
5
HOH
HOH
552
H
HOH
608
5
HOH
HOH
553
H
HOH
610
5
HOH
HOH
554
H
HOH
616
5
HOH
HOH
555
H
HOH
617
5
HOH
HOH
556
H
HOH
631
5
HOH
HOH
557
H
HOH
632
5
HOH
HOH
558
H
HOH
637
5
HOH
HOH
559
H
HOH
638
5
HOH
HOH
560
H
HOH
642
5
HOH
HOH
561
H
HOH
643
5
HOH
HOH
562
H
HOH
644
5
HOH
HOH
563
H
HOH
645
5
HOH
HOH
564
H
HOH
648
5
HOH
HOH
565
H
HOH
649
5
HOH
HOH
566
H
HOH
651
5
HOH
HOH
567
H
HOH
653
5
HOH
HOH
568
H
HOH
654
5
HOH
HOH
569
H
HOH
419
5
HOH
HOH
201
L
HOH
421
5
HOH
HOH
202
L
HOH
428
5
HOH
HOH
203
L
HOH
431
5
HOH
HOH
204
L
HOH
445
5
HOH
HOH
205
L
HOH
449
5
HOH
HOH
206
L
HOH
450
5
HOH
HOH
207
L
HOH
455
5
HOH
HOH
208
L
HOH
458
5
HOH
HOH
209
L
HOH
462
5
HOH
HOH
210
L
HOH
463
5
HOH
HOH
211
L
HOH
469
5
HOH
HOH
212
L
HOH
473
5
HOH
HOH
213
L
HOH
475
5
HOH
HOH
214
L
HOH
476
5
HOH
HOH
215
L
HOH
485
5
HOH
HOH
216
L
HOH
491
5
HOH
HOH
217
L
HOH
494
5
HOH
HOH
218
L
HOH
497
5
HOH
HOH
219
L
HOH
500
5
HOH
HOH
220
L
HOH
520
5
HOH
HOH
221
L
HOH
524
5
HOH
HOH
222
L
HOH
532
5
HOH
HOH
223
L
HOH
535
5
HOH
HOH
224
L
HOH
536
5
HOH
HOH
225
L
HOH
538
5
HOH
HOH
226
L
HOH
544
5
HOH
HOH
227
L
HOH
550
5
HOH
HOH
228
L
HOH
554
5
HOH
HOH
229
L
HOH
559
5
HOH
HOH
230
L
HOH
563
5
HOH
HOH
231
L
HOH
573
5
HOH
HOH
232
L
HOH
576
5
HOH
HOH
233
L
HOH
578
5
HOH
HOH
234
L
HOH
586
5
HOH
HOH
235
L
HOH
588
5
HOH
HOH
236
L
HOH
590
5
HOH
HOH
237
L
HOH
595
5
HOH
HOH
238
L
HOH
613
5
HOH
HOH
239
L
HOH
615
5
HOH
HOH
240
L
HOH
624
5
HOH
HOH
241
L
HOH
634
5
HOH
HOH
242
L
HOH
635
5
HOH
HOH
243
L
HOH
636
5
HOH
HOH
244
L
HOH
639
5
HOH
HOH
245
L
HOH
640
5
HOH
HOH
246
L
HOH
641
5
HOH
HOH
247
L
HOH
646
5
HOH
HOH
248
L
HOH
647
5
HOH
HOH
249
L
HOH
650
5
HOH
HOH
250
L
HOH
652
5
HOH
HOH
251
L
ILE
16
n
1
ILE
16
H
VAL
17
n
2
VAL
17
H
GLY
18
n
3
GLY
18
H
GLY
19
n
4
GLY
19
H
LYS
20
n
5
LYS
20
H
VAL
21
n
6
VAL
21
H
CYS
22
n
7
CYS
22
H
PRO
23
n
8
PRO
23
H
LYS
24
n
9
LYS
24
H
GLY
25
n
10
GLY
25
H
GLU
26
n
11
GLU
26
H
CYS
27
n
12
CYS
27
H
PRO
28
n
13
PRO
28
H
TRP
29
n
14
TRP
29
H
GLN
30
n
15
GLN
30
H
VAL
31
n
16
VAL
31
H
LEU
32
n
17
LEU
32
H
LEU
33
n
18
LEU
33
H
LEU
34
n
19
LEU
34
H
VAL
35
n
20
VAL
35
H
ASN
37
n
21
ASN
37
H
GLY
38
n
22
GLY
38
H
ALA
39
n
23
ALA
39
H
GLN
40
n
24
GLN
40
H
LEU
41
n
25
LEU
41
H
CYS
42
n
26
CYS
42
H
GLY
43
n
27
GLY
43
H
GLY
44
n
28
GLY
44
H
THR
45
n
29
THR
45
H
LEU
46
n
30
LEU
46
H
ILE
47
n
31
ILE
47
H
ASN
48
n
32
ASN
48
H
THR
49
n
33
THR
49
H
ILE
50
n
34
ILE
50
H
TRP
51
n
35
TRP
51
H
VAL
52
n
36
VAL
52
H
VAL
53
n
37
VAL
53
H
SER
54
n
38
SER
54
H
ALA
55
n
39
ALA
55
H
ALA
56
n
40
ALA
56
H
HIS
57
n
41
HIS
57
H
CYS
58
n
42
CYS
58
H
PHE
59
n
43
PHE
59
H
ASP
60
n
44
ASP
60
H
LYS
60
n
45
A
LYS
60
H
ILE
60
n
46
B
ILE
60
H
LYS
60
n
47
C
LYS
60
H
ASN
60
n
48
D
ASN
60
H
TRP
61
n
49
TRP
61
H
ARG
62
n
50
ARG
62
H
ASN
63
n
51
ASN
63
H
LEU
64
n
52
LEU
64
H
ILE
65
n
53
ILE
65
H
ALA
66
n
54
ALA
66
H
VAL
67
n
55
VAL
67
H
LEU
68
n
56
LEU
68
H
GLY
69
n
57
GLY
69
H
GLU
70
n
58
GLU
70
H
HIS
71
n
59
HIS
71
H
ASP
72
n
60
ASP
72
H
LEU
73
n
61
LEU
73
H
SER
74
n
62
SER
74
H
GLU
75
n
63
GLU
75
H
HIS
76
n
64
HIS
76
H
ASP
77
n
65
ASP
77
H
GLY
78
n
66
GLY
78
H
ASP
79
n
67
ASP
79
H
GLU
80
n
68
GLU
80
H
GLN
81
n
69
GLN
81
H
SER
82
n
70
SER
82
H
ARG
83
n
71
ARG
83
H
ARG
84
n
72
ARG
84
H
VAL
85
n
73
VAL
85
H
ALA
86
n
74
ALA
86
H
GLN
87
n
75
GLN
87
H
VAL
88
n
76
VAL
88
H
ILE
89
n
77
ILE
89
H
ILE
90
n
78
ILE
90
H
PRO
91
n
79
PRO
91
H
SER
92
n
80
SER
92
H
THR
93
n
81
THR
93
H
TYR
94
n
82
TYR
94
H
VAL
95
n
83
VAL
95
H
PRO
96
n
84
PRO
96
H
GLY
97
n
85
GLY
97
H
THR
98
n
86
THR
98
H
THR
99
n
87
THR
99
H
ASN
100
n
88
ASN
100
H
HIS
101
n
89
HIS
101
H
ASP
102
n
90
ASP
102
H
ILE
103
n
91
ILE
103
H
ALA
104
n
92
ALA
104
H
LEU
105
n
93
LEU
105
H
LEU
106
n
94
LEU
106
H
ARG
107
n
95
ARG
107
H
LEU
108
n
96
LEU
108
H
HIS
109
n
97
HIS
109
H
GLN
110
n
98
GLN
110
H
PRO
111
n
99
PRO
111
H
VAL
112
n
100
VAL
112
H
VAL
113
n
101
VAL
113
H
LEU
114
n
102
LEU
114
H
THR
115
n
103
THR
115
H
ASP
116
n
104
ASP
116
H
HIS
117
n
105
HIS
117
H
VAL
118
n
106
VAL
118
H
VAL
119
n
107
VAL
119
H
PRO
120
n
108
PRO
120
H
LEU
121
n
109
LEU
121
H
CYS
122
n
110
CYS
122
H
LEU
123
n
111
LEU
123
H
PRO
124
n
112
PRO
124
H
GLU
125
n
113
GLU
125
H
ARG
126
n
114
ARG
126
H
THR
127
n
115
THR
127
H
PHE
128
n
116
PHE
128
H
SER
129
n
117
SER
129
H
GLU
129
n
118
A
GLU
129
H
ARG
129
n
119
B
ARG
129
H
THR
129
n
120
C
THR
129
H
LEU
129
n
121
D
LEU
129
H
ALA
129
n
122
E
ALA
129
H
PHE
129
n
123
F
PHE
129
H
VAL
129
n
124
G
VAL
129
H
ARG
134
n
125
ARG
134
H
PHE
135
n
126
PHE
135
H
SER
136
n
127
SER
136
H
LEU
137
n
128
LEU
137
H
VAL
138
n
129
VAL
138
H
SER
139
n
130
SER
139
H
GLY
140
n
131
GLY
140
H
TRP
141
n
132
TRP
141
H
GLY
142
n
133
GLY
142
H
GLN
143
n
134
GLN
143
H
LEU
144
n
135
LEU
144
H
LEU
145
n
136
LEU
145
H
ASP
146
n
137
ASP
146
H
ARG
147
n
138
ARG
147
H
GLY
149
n
139
GLY
149
H
ALA
150
n
140
ALA
150
H
THR
151
n
141
THR
151
H
ALA
152
n
142
ALA
152
H
LEU
153
n
143
LEU
153
H
GLU
154
n
144
GLU
154
H
LEU
155
n
145
LEU
155
H
MET
156
n
146
MET
156
H
VAL
157
n
147
VAL
157
H
LEU
158
n
148
LEU
158
H
ASN
159
n
149
ASN
159
H
VAL
160
n
150
VAL
160
H
PRO
161
n
151
PRO
161
H
ARG
162
n
152
ARG
162
H
LEU
163
n
153
LEU
163
H
MET
164
n
154
MET
164
H
THR
165
n
155
THR
165
H
GLN
166
n
156
GLN
166
H
ASP
167
n
157
ASP
167
H
CYS
168
n
158
CYS
168
H
LEU
169
n
159
LEU
169
H
GLN
170
n
160
GLN
170
H
GLN
170
n
161
A
GLN
170
H
SER
170
n
162
B
SER
170
H
ARG
170
n
163
C
ARG
170
H
LYS
170
n
164
D
LYS
170
H
VAL
170
n
165
E
VAL
170
H
GLY
170
n
166
F
GLY
170
H
ASP
170
n
167
G
ASP
170
H
SER
170
n
168
H
SER
170
H
PRO
170
n
169
I
PRO
170
H
ASN
175
n
170
ASN
175
H
ILE
176
n
171
ILE
176
H
THR
177
n
172
THR
177
H
GLU
178
n
173
GLU
178
H
TYR
179
n
174
TYR
179
H
MET
180
n
175
MET
180
H
PHE
181
n
176
PHE
181
H
CYS
182
n
177
CYS
182
H
ALA
183
n
178
ALA
183
H
GLY
184
n
179
A
GLY
184
H
TYR
184
n
180
TYR
184
H
SER
185
n
181
SER
185
H
ASP
186
n
182
ASP
186
H
GLY
187
n
183
GLY
187
H
SER
188
n
184
A
SER
188
H
LYS
188
n
185
LYS
188
H
ASP
189
n
186
ASP
189
H
SER
190
n
187
SER
190
H
CYS
191
n
188
CYS
191
H
LYS
192
n
189
LYS
192
H
GLY
193
n
190
GLY
193
H
ASP
194
n
191
ASP
194
H
SER
195
n
192
SER
195
H
GLY
196
n
193
GLY
196
H
GLY
197
n
194
GLY
197
H
PRO
198
n
195
PRO
198
H
HIS
199
n
196
HIS
199
H
ALA
200
n
197
ALA
200
H
THR
201
n
198
THR
201
H
HIS
202
n
199
HIS
202
H
TYR
203
n
200
TYR
203
H
ARG
204
n
201
ARG
204
H
GLY
205
n
202
GLY
205
H
THR
206
n
203
THR
206
H
TRP
207
n
204
TRP
207
H
TYR
208
n
205
TYR
208
H
LEU
209
n
206
LEU
209
H
THR
210
n
207
THR
210
H
GLY
211
n
208
GLY
211
H
ILE
212
n
209
ILE
212
H
VAL
213
n
210
VAL
213
H
SER
214
n
211
SER
214
H
TRP
215
n
212
TRP
215
H
GLY
216
n
213
GLY
216
H
GLN
217
n
214
GLN
217
H
GLY
219
n
215
GLY
219
H
CYS
220
n
216
CYS
220
H
ALA
221
n
217
A
ALA
221
H
THR
221
n
218
THR
221
H
VAL
222
n
219
VAL
222
H
GLY
223
n
220
GLY
223
H
HIS
224
n
221
HIS
224
H
PHE
225
n
222
PHE
225
H
GLY
226
n
223
GLY
226
H
VAL
227
n
224
VAL
227
H
TYR
228
n
225
TYR
228
H
THR
229
n
226
THR
229
H
ARG
230
n
227
ARG
230
H
VAL
231
n
228
VAL
231
H
SER
232
n
229
SER
232
H
GLN
233
n
230
GLN
233
H
TYR
234
n
231
TYR
234
H
ILE
235
n
232
ILE
235
H
GLU
236
n
233
GLU
236
H
TRP
237
n
234
TRP
237
H
LEU
238
n
235
LEU
238
H
GLN
239
n
236
GLN
239
H
LYS
240
n
237
LYS
240
H
LEU
241
n
238
LEU
241
H
MET
242
n
239
MET
242
H
ARG
243
n
240
ARG
243
H
SER
244
n
241
SER
244
H
GLU
245
n
242
GLU
245
H
PRO
246
n
243
PRO
246
H
ARG
247
n
244
ARG
247
H
PRO
248
n
245
PRO
248
H
GLY
249
n
246
GLY
249
H
VAL
250
n
247
VAL
250
H
LEU
251
n
248
LEU
251
H
LEU
252
n
249
LEU
252
H
ARG
253
n
250
ARG
253
H
ALA
254
n
251
ALA
254
H
PRO
255
n
252
PRO
255
H
PHE
256
n
253
PHE
256
H
PRO
257
n
254
PRO
257
H
ILE
90
n
1
ILE
90
L
CYS
91
n
2
CYS
91
L
VAL
92
n
3
VAL
92
L
ASN
93
n
4
ASN
93
L
GLU
94
n
5
GLU
94
L
ASN
95
n
6
ASN
95
L
GLY
96
n
7
GLY
96
L
GLY
97
n
8
GLY
97
L
CYS
98
n
9
CYS
98
L
GLU
99
n
10
GLU
99
L
GLN
100
n
11
GLN
100
L
TYR
101
n
12
TYR
101
L
CYS
102
n
13
CYS
102
L
SER
103
n
14
SER
103
L
ASP
104
n
15
ASP
104
L
HIS
105
n
16
HIS
105
L
THR
106
n
17
THR
106
L
GLY
107
n
18
GLY
107
L
THR
108
n
19
THR
108
L
LYS
109
n
20
LYS
109
L
ARG
110
n
21
ARG
110
L
SER
111
n
22
SER
111
L
CYS
112
n
23
CYS
112
L
ARG
113
n
24
ARG
113
L
CYS
114
n
25
CYS
114
L
HIS
115
n
26
HIS
115
L
GLU
116
n
27
GLU
116
L
GLY
117
n
28
GLY
117
L
TYR
118
n
29
TYR
118
L
SER
119
n
30
SER
119
L
LEU
120
n
31
LEU
120
L
LEU
121
n
32
LEU
121
L
ALA
122
n
33
ALA
122
L
ASP
123
n
34
ASP
123
L
GLY
124
n
35
GLY
124
L
VAL
125
n
36
VAL
125
L
SER
126
n
37
SER
126
L
CYS
127
n
38
CYS
127
L
THR
128
n
39
THR
128
L
PRO
129
n
40
PRO
129
L
THR
130
n
41
THR
130
L
VAL
131
n
42
VAL
131
L
GLU
132
n
43
GLU
132
L
TYR
133
n
44
TYR
133
L
PRO
134
n
45
PRO
134
L
CYS
135
n
46
CYS
135
L
GLY
136
n
47
GLY
136
L
LYS
137
n
48
LYS
137
L
ILE
138
n
49
ILE
138
L
PRO
139
n
50
PRO
139
L
ILE
140
n
51
ILE
140
L
LEU
141
n
52
LEU
141
L
GLU
142
n
53
GLU
142
L
LYS
143
n
54
LYS
143
L
ARG
144
n
55
ARG
144
L
0.2110
0.2100
0.0050
0.2300
2026
5.0000
author_and_software_defined_assembly
PISA
2
dimeric
2070
-19
13940
H
GLU
75
A
O
GLU
63
1_555
H
CA
302
D
CA
CA
1_555
H
GLU
70
A
OE1
GLU
58
1_555
171.3
H
GLU
75
A
O
GLU
63
1_555
H
CA
302
D
CA
CA
1_555
H
ASP
72
A
O
ASP
60
1_555
84.0
H
GLU
70
A
OE1
GLU
58
1_555
H
CA
302
D
CA
CA
1_555
H
ASP
72
A
O
ASP
60
1_555
87.4
H
GLU
75
A
O
GLU
63
1_555
H
CA
302
D
CA
CA
1_555
H
GLU
80
A
OE1
GLU
68
1_555
87.5
H
GLU
70
A
OE1
GLU
58
1_555
H
CA
302
D
CA
CA
1_555
H
GLU
80
A
OE1
GLU
68
1_555
101.0
H
ASP
72
A
O
ASP
60
1_555
H
CA
302
D
CA
CA
1_555
H
GLU
80
A
OE1
GLU
68
1_555
168.7
H
GLU
75
A
O
GLU
63
1_555
H
CA
302
D
CA
CA
1_555
H
HOH
429
E
O
HOH
1_555
99.9
H
GLU
70
A
OE1
GLU
58
1_555
H
CA
302
D
CA
CA
1_555
H
HOH
429
E
O
HOH
1_555
82.3
H
ASP
72
A
O
ASP
60
1_555
H
CA
302
D
CA
CA
1_555
H
HOH
429
E
O
HOH
1_555
100.2
H
GLU
80
A
OE1
GLU
68
1_555
H
CA
302
D
CA
CA
1_555
H
HOH
429
E
O
HOH
1_555
88.6
H
GLU
75
A
O
GLU
63
1_555
H
CA
302
D
CA
CA
1_555
H
HOH
569
E
O
HOH
1_555
96.3
H
GLU
70
A
OE1
GLU
58
1_555
H
CA
302
D
CA
CA
1_555
H
HOH
569
E
O
HOH
1_555
82.6
H
ASP
72
A
O
ASP
60
1_555
H
CA
302
D
CA
CA
1_555
H
HOH
569
E
O
HOH
1_555
88.0
H
GLU
80
A
OE1
GLU
68
1_555
H
CA
302
D
CA
CA
1_555
H
HOH
569
E
O
HOH
1_555
85.5
H
HOH
429
E
O
HOH
1_555
H
CA
302
D
CA
CA
1_555
H
HOH
569
E
O
HOH
1_555
162.5
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
H
N
LYS
20
A
N
LYS
5
H
O
VAL
157
A
O
VAL
147
H
N
LEU
163
A
N
LEU
153
H
O
CYS
182
A
O
CYS
177
H
N
PHE
181
A
N
PHE
176
H
O
TYR
228
A
O
TYR
225
H
O
VAL
227
A
O
VAL
224
H
N
TRP
215
A
N
TRP
212
H
O
TYR
208
A
O
TYR
205
H
N
THR
201
A
N
THR
198
H
O
ALA
200
A
O
ALA
197
H
N
LEU
137
A
N
LEU
128
H
N
SER
136
A
N
SER
127
H
O
VAL
160
A
O
VAL
150
H
O
LEU
252
A
O
LEU
249
H
N
VAL
88
A
N
VAL
76
H
N
ILE
89
A
N
ILE
77
H
O
LEU
105
A
O
LEU
93
H
O
LEU
106
A
O
LEU
94
H
N
VAL
52
A
N
VAL
36
H
O
VAL
53
A
O
VAL
37
H
N
THR
45
A
N
THR
29
H
O
LEU
41
A
O
LEU
25
H
N
LEU
33
A
N
LEU
18
H
N
LEU
34
A
N
LEU
19
H
O
ILE
65
A
O
ILE
53
H
N
LEU
68
A
N
LEU
56
H
O
GLN
81
A
O
GLN
69
L
N
SER
103
B
N
SER
14
L
O
SER
111
B
O
SER
22
L
N
SER
119
B
N
SER
30
L
O
THR
128
B
O
THR
39
1
H
HOH
401
E
HOH
1
H
ASN
48
-161.51
-160.89
1
H
HIS
71
-144.74
-60.30
C
1
H
THR
129
-121.88
-56.50
1
H
SER
214
-125.73
-67.98
1
L
GLN
100
-122.40
-96.87
1
L
THR
108
80.29
-25.28
PROTEIN_REP.PARAM
PROTEIN.TOP
DNA-RNA_REP.PARAM
DNA-RNA.TOP
WATER_REP.PARAM
WATER.TOP
ION.PARAM
ION.TOP
1GG.PAR
1GG.TOP
69.010
27.2048
6.600
-1.5200
0.0000
0.0000
-1.5200
0.0000
3.0400
0.2290
0.0050
0.2090
0.2100
1.9400
32.4200
1950
40422
38783
5.0000
95.7000
1.000
0.500
RANDOM
272346.0000
0.0000
1
RESTRAINED
THROUGHOUT
0.000
Molecular Substitution
FLAT MODEL
40.0001
0.3655
0.260
0.230
5.000
0.110
0.090
1.9400
32.4200
220
2644
34
0
2390
0.005
1.100
21.200
0.990
1.340
1.500
2.100
2.000
2.140
2.000
3.170
2.500
0.2340
0.0160
0.2180
2.0300
210
4100
4310
8
4.9000
86.5000
15.800
1.940
50.000
4ISI
40495
0.000
0.099
1
60.600
14.100
99.900
0.301
1.940
2.010
10.900
1
11.100
100.000
refinement
Axel T. Brunger
axel.brunger@yale.edu
Fortran_77
http://cns-online.org/
CNS
package
data extraction
PDB
deposit@deposit.rcsb.org
April 22, 2011
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.11
data reduction
HKL-2000
data scaling
HKL-2000
refinement
CNX
2005
Factor VII heavy chain (E.C.3.4.21.21), Factor VII light chain (E.C.3.4.21.21)
Structure of FACTOR VIIA in complex with the inhibitor (6S)-N-(4-CARBAMIMIDOYLBENZYL)-1-CHLORO-3-(CYCLOBUTYLAMINO)-8,8-DIETHYL-4-OXO-4,6,7,8-TETRAHYDROPYRROLO[1,2-A]PYRAZINE-6-CARBOXAMIDE
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
5
N
N
H
ALA
55
A
ALA
39
HELX_P
H
ASP
60
A
ASP
44
5
1
6
H
ASN
60
A
ASN
48
HELX_P
H
ARG
62
A
ARG
50
5
2
3
D
H
GLU
125
A
GLU
113
HELX_P
H
THR
129
A
THR
120
1
3
8
C
H
LEU
129
A
LEU
121
HELX_P
H
VAL
129
A
VAL
124
5
4
4
D
G
H
MET
164
A
MET
154
HELX_P
H
SER
170
A
SER
162
1
5
9
B
H
TYR
234
A
TYR
231
HELX_P
H
ARG
243
A
ARG
240
1
6
10
L
ASN
93
B
ASN
4
HELX_P
L
CYS
98
B
CYS
9
5
7
6
L
ILE
138
B
ILE
49
HELX_P
L
LYS
143
B
LYS
54
1
8
6
disulf
2.045
H
CYS
22
A
SG
CYS
7
1_555
H
CYS
27
A
SG
CYS
12
1_555
disulf
2.026
H
CYS
42
A
SG
CYS
26
1_555
H
CYS
58
A
SG
CYS
42
1_555
disulf
2.032
H
CYS
122
A
SG
CYS
110
1_555
L
CYS
135
B
SG
CYS
46
1_555
disulf
2.038
H
CYS
168
A
SG
CYS
158
1_555
H
CYS
182
A
SG
CYS
177
1_555
disulf
2.028
H
CYS
191
A
SG
CYS
188
1_555
H
CYS
220
A
SG
CYS
216
1_555
disulf
2.031
L
CYS
91
B
SG
CYS
2
1_555
L
CYS
102
B
SG
CYS
13
1_555
disulf
2.029
L
CYS
98
B
SG
CYS
9
1_555
L
CYS
112
B
SG
CYS
23
1_555
disulf
2.039
L
CYS
114
B
SG
CYS
25
1_555
L
CYS
127
B
SG
CYS
38
1_555
metalc
2.481
H
GLU
75
A
O
GLU
63
1_555
H
CA
302
D
CA
CA
1_555
metalc
2.484
H
GLU
70
A
OE1
GLU
58
1_555
H
CA
302
D
CA
CA
1_555
metalc
2.488
H
ASP
72
A
O
ASP
60
1_555
H
CA
302
D
CA
CA
1_555
metalc
2.496
H
GLU
80
A
OE1
GLU
68
1_555
H
CA
302
D
CA
CA
1_555
metalc
2.599
H
CA
302
D
CA
CA
1_555
H
HOH
429
E
O
HOH
1_555
metalc
2.688
H
CA
302
D
CA
CA
1_555
H
HOH
569
E
O
HOH
1_555
HYDROLASE/Hydrolase Inhibitor
GLYCOPROTEIN, HYDROLASE, SERINE PROTEASE, PLASMA, BLOOD COAGULATION FACTOR, PROTEIN INHIBITOR COMPLEX, CALCIUM-BINDING, HYDROLASE-Hydrolase Inhibitor complex
H
PHE
256
A
PHE
253
1
H
PRO
257
A
PRO
254
3.23
FA7_HUMAN
UNP
1
213
P08709
IVGGKVCPKGECPWQVLLLVNGAQLCGGTLINTIWVVSAAHCFDKIKNWRNLIAVLGEHDLSEHDGDEQSRRVAQVIIPS
TYVPGTTNHDIALLRLHQPVVLTDHVVPLCLPERTFSERTLAFVRFSLVSGWGQLLDRGATALELMVLNVPRLMTQDCLQ
QSRKVGDSPNITEYMFCAGYSDGSKDSCKGDSGGPHATHYRGTWYLTGIVSWGQGCATVGHFGVYTRVSQYIEWLQKLMR
SEPRPGVLLRAPFP
FA7_HUMAN
UNP
2
150
P08709
ICVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTPTVEYPCGKIPILEKR
213
466
4ISI
16
257
P08709
H
1
1
254
150
204
4ISI
90
144
P08709
L
2
1
55
8
8
2
2
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
H
LYS
20
A
LYS
5
H
VAL
21
A
VAL
6
H
MET
156
A
MET
146
H
LEU
163
A
LEU
153
H
MET
180
A
MET
175
H
ALA
183
A
ALA
178
H
GLY
226
A
GLY
223
H
ARG
230
A
ARG
227
H
THR
206
A
THR
203
H
TRP
215
A
TRP
212
H
PRO
198
A
PRO
195
H
TYR
203
A
TYR
200
H
PHE
135
A
PHE
126
H
GLY
140
A
GLY
131
H
MET
156
A
MET
146
H
LEU
163
A
LEU
153
H
LEU
251
A
LEU
248
H
ALA
254
A
ALA
251
H
GLN
81
A
GLN
69
H
PRO
91
A
PRO
79
H
ALA
104
A
ALA
92
H
LEU
108
A
LEU
96
H
TRP
51
A
TRP
35
H
SER
54
A
SER
38
H
ALA
39
A
ALA
23
H
LEU
46
A
LEU
30
H
GLN
30
A
GLN
15
H
VAL
35
A
VAL
20
H
LEU
64
A
LEU
52
H
LEU
68
A
LEU
56
H
GLN
81
A
GLN
69
H
PRO
91
A
PRO
79
L
TYR
101
B
TYR
12
L
ASP
104
B
ASP
15
L
ARG
110
B
ARG
21
L
ARG
113
B
ARG
24
L
TYR
118
B
TYR
29
L
LEU
120
B
LEU
31
L
CYS
127
B
CYS
38
L
PRO
129
B
PRO
40
BINDING SITE FOR RESIDUE 1GG H 301
Software
17
BINDING SITE FOR RESIDUE CA H 302
Software
6
H
HIS
57
A
HIS
41
17
1_555
H
GLY
97
A
GLY
85
17
1_555
H
THR
98
A
THR
86
17
1_555
H
THR
99
A
THR
87
17
1_555
H
PRO
170
A
PRO
169
I
17
1_555
H
ASP
189
A
ASP
186
17
1_555
H
SER
190
A
SER
187
17
1_555
H
CYS
191
A
CYS
188
17
1_555
H
SER
195
A
SER
192
17
1_555
H
SER
214
A
SER
211
17
1_555
H
TRP
215
A
TRP
212
17
1_555
H
GLY
216
A
GLY
213
17
1_555
H
GLN
217
A
GLN
214
17
1_555
H
GLY
219
A
GLY
215
17
1_555
H
GLY
226
A
GLY
223
17
1_555
H
HOH
425
E
HOH
17
1_555
H
HOH
532
E
HOH
17
1_555
H
GLU
70
A
GLU
58
6
1_555
H
ASP
72
A
ASP
60
6
1_555
H
GLU
75
A
GLU
63
6
1_555
H
GLU
80
A
GLU
68
6
1_555
H
HOH
429
E
HOH
6
1_555
H
HOH
569
E
HOH
6
1_555
92
P 41 21 2