0.015956
0.000000
0.000000
0.000000
0.014678
0.000000
0.000000
0.000000
0.009447
0.000000
0.000000
0.000000
Emptage, R.P.
Pemble IV, C.W.
York, J.D.
Raetz, C.R.H.
Zhou, P.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.000
90.000
90.000
62.672
68.130
105.851
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C10 H16 N5 O13 P3
507.181
ADENOSINE-5'-TRIPHOSPHATE
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C8 H18 N2 O4 S
238.305
4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
HEPES
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C3 H8 O3
92.094
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C6 H14 O2
118.174
(4S)-2-METHYL-2,4-PENTANEDIOL
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
P
N
75
N
O
N
76
N
O
N
77
N
O
N
78
R
P
N
79
N
O
N
80
N
O
N
81
N
O
N
82
R
P
N
83
N
O
N
84
N
O
N
85
N
O
N
86
N
O
N
87
N
C
N
88
R
C
N
89
N
O
N
90
S
C
N
91
N
O
N
92
R
C
N
93
N
O
N
94
R
C
Y
95
N
N
Y
96
N
C
Y
97
N
N
Y
98
N
C
Y
99
N
C
N
100
N
N
Y
101
N
N
Y
102
N
C
Y
103
N
N
Y
104
N
C
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
N
N
122
R
C
N
123
N
C
N
124
N
O
N
125
N
C
N
126
N
S
N
127
N
O
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
N
N
136
N
C
N
137
N
C
N
138
N
N
N
139
N
C
N
140
N
C
N
141
N
C
N
142
N
C
N
143
N
O
N
144
N
C
N
145
N
C
N
146
N
S
N
147
N
O
N
148
N
O
N
149
N
O
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
N
N
169
S
C
N
170
N
C
N
171
N
O
N
172
N
C
N
173
N
C
N
174
N
C
N
175
N
O
N
176
N
N
N
177
N
O
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
N
N
189
S
C
N
190
N
C
N
191
N
O
N
192
N
C
N
193
N
C
N
194
N
C
N
195
N
O
N
196
N
O
N
197
N
O
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
N
N
208
N
C
N
209
N
C
N
210
N
O
N
211
N
O
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
C
N
218
N
O
N
219
N
C
N
220
N
O
N
221
N
C
N
222
N
O
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
N
N
232
S
C
N
233
N
C
N
234
N
O
N
235
N
C
Y
236
N
C
Y
237
N
N
Y
238
N
C
Y
239
N
C
Y
240
N
N
N
241
N
O
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
O
N
253
N
H
N
254
N
H
N
255
N
N
N
256
S
C
N
257
N
C
N
258
N
O
N
259
S
C
N
260
N
C
N
261
N
C
N
262
N
C
N
263
N
O
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
N
N
278
S
C
N
279
N
C
N
280
N
O
N
281
N
C
N
282
N
C
N
283
N
C
N
284
N
C
N
285
N
O
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
N
N
300
S
C
N
301
N
C
N
302
N
O
N
303
N
C
N
304
N
C
N
305
N
C
N
306
N
C
N
307
N
N
N
308
N
O
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
N
N
325
S
C
N
326
N
C
N
327
N
O
N
328
N
C
N
329
N
C
N
330
N
S
N
331
N
C
N
332
N
O
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
C
N
345
N
C
N
346
N
O
N
347
N
C
N
348
N
C
N
349
S
C
N
350
N
O
N
351
N
C
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
N
N
367
S
C
N
368
N
C
N
369
N
O
N
370
N
C
Y
371
N
C
Y
372
N
C
Y
373
N
C
Y
374
N
C
Y
375
N
C
Y
376
N
C
N
377
N
O
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
N
N
390
S
C
N
391
N
C
N
392
N
O
N
393
N
C
N
394
N
C
N
395
N
C
N
396
N
O
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
N
N
407
S
C
N
408
N
C
N
409
N
O
N
410
N
C
N
411
N
O
N
412
N
O
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
N
N
421
S
C
N
422
N
C
N
423
N
O
N
424
R
C
N
425
N
O
N
426
N
C
N
427
N
O
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
N
N
438
S
C
N
439
N
C
N
440
N
O
N
441
N
C
Y
442
N
C
Y
443
N
C
Y
444
N
C
Y
445
N
N
Y
446
N
C
Y
447
N
C
Y
448
N
C
Y
449
N
C
Y
450
N
C
N
451
N
O
N
452
N
H
N
453
N
H
N
454
N
H
N
455
N
H
N
456
N
H
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
H
N
462
N
H
N
463
N
H
N
464
N
N
N
465
S
C
N
466
N
C
N
467
N
O
N
468
N
C
Y
469
N
C
Y
470
N
C
Y
471
N
C
Y
472
N
C
Y
473
N
C
Y
474
N
C
N
475
N
O
N
476
N
O
N
477
N
H
N
478
N
H
N
479
N
H
N
480
N
H
N
481
N
H
N
482
N
H
N
483
N
H
N
484
N
H
N
485
N
H
N
486
N
H
N
487
N
H
N
488
N
N
N
489
S
C
N
490
N
C
N
491
N
O
N
492
N
C
N
493
N
C
N
494
N
C
N
495
N
O
N
496
N
H
N
497
N
H
N
498
N
H
N
499
N
H
N
500
N
H
N
501
N
H
N
502
N
H
N
503
N
H
N
504
N
H
N
505
N
H
N
506
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
doub
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
doub
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
Y
104
N
sing
Y
105
N
sing
Y
106
N
doub
N
107
N
sing
Y
108
N
sing
Y
109
N
sing
Y
110
N
doub
N
111
N
sing
Y
112
N
doub
N
113
N
sing
N
114
N
sing
Y
115
N
sing
Y
116
N
doub
N
117
N
sing
Y
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
doub
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
doub
N
162
N
doub
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
doub
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
doub
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
doub
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
doub
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
doub
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
Y
235
N
sing
Y
236
N
doub
Y
237
N
doub
N
238
N
sing
Y
239
N
sing
N
240
N
sing
Y
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
doub
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
doub
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
doub
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
doub
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
doub
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
Y
364
N
doub
Y
365
N
sing
Y
366
N
sing
N
367
N
sing
Y
368
N
doub
N
369
N
sing
Y
370
N
doub
N
371
N
sing
Y
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
doub
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
doub
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
doub
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
doub
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
Y
433
N
doub
Y
434
N
sing
Y
435
N
sing
N
436
N
sing
Y
437
N
doub
Y
438
N
sing
Y
439
N
sing
N
440
N
sing
Y
441
N
sing
Y
442
N
doub
N
443
N
sing
Y
444
N
doub
N
445
N
sing
Y
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
doub
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
sing
Y
461
N
doub
Y
462
N
sing
Y
463
N
sing
N
464
N
sing
Y
465
N
doub
N
466
N
sing
Y
467
N
doub
N
468
N
sing
Y
469
N
sing
N
470
N
sing
N
471
N
sing
N
472
N
sing
N
473
N
sing
N
474
N
sing
N
475
N
sing
N
476
N
sing
N
477
N
sing
N
478
N
sing
N
479
N
sing
N
480
N
doub
N
481
N
sing
N
482
N
sing
N
483
N
sing
N
484
N
sing
N
485
N
sing
N
486
N
sing
N
487
N
sing
N
488
N
sing
N
489
N
sing
N
490
N
sing
N
491
N
sing
US
Biochemistry
BICHAW
0033
0006-2960
52
2280
2290
10.1021/bi400097z
23464738
Mechanistic Characterization of the Tetraacyldisaccharide-1-phosphate 4'-Kinase LpxK Involved in Lipid A Biosynthesis.
2013
10.2210/pdb4itm/pdb
pdb_00004itm
100
1
CCD
2011-12-05
MARMOSAIC 225 mm CCD
Si(111)
SINGLE WAVELENGTH
M
x-ray
1
1.0
1.0
22-BM
APS
1.0
SYNCHROTRON
APS BEAMLINE 22-BM
36597.730
Tetraacyldisaccharide 4'-kinase
2.7.1.130
1
man
polymer
507.181
ADENOSINE-5'-TRIPHOSPHATE
1
syn
non-polymer
238.305
4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
1
syn
non-polymer
118.174
(4S)-2-METHYL-2,4-PENTANEDIOL
1
syn
non-polymer
92.094
GLYCEROL
1
syn
non-polymer
18.015
water
139
nat
water
Lipid A 4'-kinase
no
no
MLRSSLLPFSYLYEKIINFRNTLYDKGFLKIKKLPVPVISVGNLSVGGSGKTSFVMYLADLLKDKRVCILSRGYKRKSKG
TLIVSEYGNLKVSWEEAGDEPYLMAKLLPHVSVVASEDRYKGGLLALEKLSPEVFILDDGFQHRKLHRDLNILLLKKKDL
KDRLLPAGNLREPLKEIRRADALVLTYQEVEPFEFFTGKPTFKMFREFCCLLNSDFEEVPFDILKEREVIAFSGLGDNGQ
FRKVLKNLGIKVKEFMSFPDHYDYSDFTPEEGEIYLTTPKDLIKLQGYENVFALNFKVKLEREEKLKKLIYRIFY
MLRSSLLPFSYLYEKIINFRNTLYDKGFLKIKKLPVPVISVGNLSVGGSGKTSFVMYLADLLKDKRVCILSRGYKRKSKG
TLIVSEYGNLKVSWEEAGDEPYLMAKLLPHVSVVASEDRYKGGLLALEKLSPEVFILDDGFQHRKLHRDLNILLLKKKDL
KDRLLPAGNLREPLKEIRRADALVLTYQEVEPFEFFTGKPTFKMFREFCCLLNSDFEEVPFDILKEREVIAFSGLGDNGQ
FRKVLKNLGIKVKEFMSFPDHYDYSDFTPEEGEIYLTTPKDLIKLQGYENVFALNFKVKLEREEKLKKLIYRIFY
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
VF5
sample
lpxK, aq_1656
224324
Aquifex aeolicus
562
Escherichia coli
1
3.09
60.16
VAPOR DIFFUSION, SITTING DROP
7.5
HEPES, MPD, NaCl, DDM, Glycerol, EDTA, ATP, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K
293
software
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_site
repository
Initial release
Database references
Refinement description
Data collection
Database references
Derived calculations
Refinement description
1
0
2013-04-03
1
1
2013-04-17
1
2
2017-11-15
1
3
2023-09-20
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
RCSB
2013-01-18
REL
REL
ATP
ADENOSINE-5'-TRIPHOSPHATE
EPE
4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
MPD
(4S)-2-METHYL-2,4-PENTANEDIOL
GOL
GLYCEROL
HOH
water
4EHX
PDB ENTRY 4EHX
PDB
experimental model
ATP
401
2
ATP
ATP
401
A
EPE
402
3
EPE
EPE
402
A
MPD
403
4
MPD
MPD
403
A
GOL
404
5
GOL
GOL
404
A
HOH
1
6
HOH
HOH
501
A
HOH
2
6
HOH
HOH
502
A
HOH
3
6
HOH
HOH
503
A
HOH
4
6
HOH
HOH
504
A
HOH
5
6
HOH
HOH
505
A
HOH
6
6
HOH
HOH
506
A
HOH
7
6
HOH
HOH
507
A
HOH
8
6
HOH
HOH
508
A
HOH
9
6
HOH
HOH
509
A
HOH
10
6
HOH
HOH
510
A
HOH
11
6
HOH
HOH
511
A
HOH
12
6
HOH
HOH
512
A
HOH
13
6
HOH
HOH
513
A
HOH
14
6
HOH
HOH
514
A
HOH
15
6
HOH
HOH
515
A
HOH
16
6
HOH
HOH
516
A
HOH
17
6
HOH
HOH
517
A
HOH
18
6
HOH
HOH
518
A
HOH
19
6
HOH
HOH
519
A
HOH
20
6
HOH
HOH
520
A
HOH
21
6
HOH
HOH
521
A
HOH
22
6
HOH
HOH
522
A
HOH
23
6
HOH
HOH
523
A
HOH
24
6
HOH
HOH
524
A
HOH
25
6
HOH
HOH
525
A
HOH
26
6
HOH
HOH
526
A
HOH
27
6
HOH
HOH
527
A
HOH
28
6
HOH
HOH
528
A
HOH
29
6
HOH
HOH
529
A
HOH
30
6
HOH
HOH
530
A
HOH
31
6
HOH
HOH
531
A
HOH
32
6
HOH
HOH
532
A
HOH
33
6
HOH
HOH
533
A
HOH
34
6
HOH
HOH
534
A
HOH
35
6
HOH
HOH
535
A
HOH
36
6
HOH
HOH
536
A
HOH
37
6
HOH
HOH
537
A
HOH
38
6
HOH
HOH
538
A
HOH
39
6
HOH
HOH
539
A
HOH
40
6
HOH
HOH
540
A
HOH
41
6
HOH
HOH
541
A
HOH
42
6
HOH
HOH
542
A
HOH
43
6
HOH
HOH
543
A
HOH
44
6
HOH
HOH
544
A
HOH
45
6
HOH
HOH
545
A
HOH
46
6
HOH
HOH
546
A
HOH
47
6
HOH
HOH
547
A
HOH
48
6
HOH
HOH
548
A
HOH
49
6
HOH
HOH
549
A
HOH
50
6
HOH
HOH
550
A
HOH
51
6
HOH
HOH
551
A
HOH
52
6
HOH
HOH
552
A
HOH
53
6
HOH
HOH
553
A
HOH
54
6
HOH
HOH
554
A
HOH
55
6
HOH
HOH
555
A
HOH
56
6
HOH
HOH
556
A
HOH
57
6
HOH
HOH
557
A
HOH
58
6
HOH
HOH
558
A
HOH
59
6
HOH
HOH
559
A
HOH
60
6
HOH
HOH
560
A
HOH
61
6
HOH
HOH
561
A
HOH
62
6
HOH
HOH
562
A
HOH
63
6
HOH
HOH
563
A
HOH
64
6
HOH
HOH
564
A
HOH
65
6
HOH
HOH
565
A
HOH
66
6
HOH
HOH
566
A
HOH
67
6
HOH
HOH
567
A
HOH
68
6
HOH
HOH
568
A
HOH
69
6
HOH
HOH
569
A
HOH
70
6
HOH
HOH
570
A
HOH
71
6
HOH
HOH
571
A
HOH
72
6
HOH
HOH
572
A
HOH
73
6
HOH
HOH
573
A
HOH
74
6
HOH
HOH
574
A
HOH
75
6
HOH
HOH
575
A
HOH
76
6
HOH
HOH
576
A
HOH
77
6
HOH
HOH
577
A
HOH
78
6
HOH
HOH
578
A
HOH
79
6
HOH
HOH
579
A
HOH
80
6
HOH
HOH
580
A
HOH
81
6
HOH
HOH
581
A
HOH
82
6
HOH
HOH
582
A
HOH
83
6
HOH
HOH
583
A
HOH
84
6
HOH
HOH
584
A
HOH
85
6
HOH
HOH
585
A
HOH
86
6
HOH
HOH
586
A
HOH
87
6
HOH
HOH
587
A
HOH
88
6
HOH
HOH
588
A
HOH
89
6
HOH
HOH
589
A
HOH
90
6
HOH
HOH
590
A
HOH
91
6
HOH
HOH
591
A
HOH
92
6
HOH
HOH
592
A
HOH
93
6
HOH
HOH
593
A
HOH
94
6
HOH
HOH
594
A
HOH
95
6
HOH
HOH
595
A
HOH
96
6
HOH
HOH
596
A
HOH
97
6
HOH
HOH
597
A
HOH
98
6
HOH
HOH
598
A
HOH
99
6
HOH
HOH
599
A
HOH
100
6
HOH
HOH
600
A
HOH
101
6
HOH
HOH
601
A
HOH
102
6
HOH
HOH
602
A
HOH
103
6
HOH
HOH
603
A
HOH
104
6
HOH
HOH
604
A
HOH
105
6
HOH
HOH
605
A
HOH
106
6
HOH
HOH
606
A
HOH
107
6
HOH
HOH
607
A
HOH
108
6
HOH
HOH
608
A
HOH
109
6
HOH
HOH
609
A
HOH
110
6
HOH
HOH
610
A
HOH
111
6
HOH
HOH
611
A
HOH
112
6
HOH
HOH
612
A
HOH
113
6
HOH
HOH
613
A
HOH
114
6
HOH
HOH
614
A
HOH
115
6
HOH
HOH
615
A
HOH
116
6
HOH
HOH
616
A
HOH
117
6
HOH
HOH
617
A
HOH
118
6
HOH
HOH
618
A
HOH
119
6
HOH
HOH
619
A
HOH
120
6
HOH
HOH
620
A
HOH
121
6
HOH
HOH
621
A
HOH
122
6
HOH
HOH
622
A
HOH
123
6
HOH
HOH
623
A
HOH
124
6
HOH
HOH
624
A
HOH
125
6
HOH
HOH
625
A
HOH
126
6
HOH
HOH
626
A
HOH
127
6
HOH
HOH
627
A
HOH
128
6
HOH
HOH
628
A
HOH
129
6
HOH
HOH
629
A
HOH
130
6
HOH
HOH
630
A
HOH
131
6
HOH
HOH
631
A
HOH
132
6
HOH
HOH
632
A
HOH
133
6
HOH
HOH
633
A
HOH
134
6
HOH
HOH
634
A
HOH
135
6
HOH
HOH
635
A
HOH
136
6
HOH
HOH
636
A
HOH
137
6
HOH
HOH
637
A
HOH
138
6
HOH
HOH
638
A
HOH
139
6
HOH
HOH
639
A
MET
1
n
1
MET
1
A
LEU
2
n
2
LEU
2
A
ARG
3
n
3
ARG
3
A
SER
4
n
4
SER
4
A
SER
5
n
5
SER
5
A
LEU
6
n
6
LEU
6
A
LEU
7
n
7
LEU
7
A
PRO
8
n
8
PRO
8
A
PHE
9
n
9
PHE
9
A
SER
10
n
10
SER
10
A
TYR
11
n
11
TYR
11
A
LEU
12
n
12
LEU
12
A
TYR
13
n
13
TYR
13
A
GLU
14
n
14
GLU
14
A
LYS
15
n
15
LYS
15
A
ILE
16
n
16
ILE
16
A
ILE
17
n
17
ILE
17
A
ASN
18
n
18
ASN
18
A
PHE
19
n
19
PHE
19
A
ARG
20
n
20
ARG
20
A
ASN
21
n
21
ASN
21
A
THR
22
n
22
THR
22
A
LEU
23
n
23
LEU
23
A
TYR
24
n
24
TYR
24
A
ASP
25
n
25
ASP
25
A
LYS
26
n
26
LYS
26
A
GLY
27
n
27
GLY
27
A
PHE
28
n
28
PHE
28
A
LEU
29
n
29
LEU
29
A
LYS
30
n
30
LYS
30
A
ILE
31
n
31
ILE
31
A
LYS
32
n
32
LYS
32
A
LYS
33
n
33
LYS
33
A
LEU
34
n
34
LEU
34
A
PRO
35
n
35
PRO
35
A
VAL
36
n
36
VAL
36
A
PRO
37
n
37
PRO
37
A
VAL
38
n
38
VAL
38
A
ILE
39
n
39
ILE
39
A
SER
40
n
40
SER
40
A
VAL
41
n
41
VAL
41
A
GLY
42
n
42
GLY
42
A
ASN
43
n
43
ASN
43
A
LEU
44
n
44
LEU
44
A
SER
45
n
45
SER
45
A
VAL
46
n
46
VAL
46
A
GLY
47
n
47
GLY
47
A
GLY
48
n
48
GLY
48
A
SER
49
n
49
SER
49
A
GLY
50
n
50
GLY
50
A
LYS
51
n
51
LYS
51
A
THR
52
n
52
THR
52
A
SER
53
n
53
SER
53
A
PHE
54
n
54
PHE
54
A
VAL
55
n
55
VAL
55
A
MET
56
n
56
MET
56
A
TYR
57
n
57
TYR
57
A
LEU
58
n
58
LEU
58
A
ALA
59
n
59
ALA
59
A
ASP
60
n
60
ASP
60
A
LEU
61
n
61
LEU
61
A
LEU
62
n
62
LEU
62
A
LYS
63
n
63
LYS
63
A
ASP
64
n
64
ASP
64
A
LYS
65
n
65
LYS
65
A
ARG
66
n
66
ARG
66
A
VAL
67
n
67
VAL
67
A
CYS
68
n
68
CYS
68
A
ILE
69
n
69
ILE
69
A
LEU
70
n
70
LEU
70
A
SER
71
n
71
SER
71
A
ARG
72
n
72
ARG
72
A
GLY
73
n
73
GLY
73
A
TYR
74
n
74
TYR
74
A
LYS
75
n
75
LYS
75
A
ARG
76
n
76
ARG
76
A
LYS
77
n
77
LYS
77
A
SER
78
n
78
SER
78
A
LYS
79
n
79
LYS
79
A
GLY
80
n
80
GLY
80
A
THR
81
n
81
THR
81
A
LEU
82
n
82
LEU
82
A
ILE
83
n
83
ILE
83
A
VAL
84
n
84
VAL
84
A
SER
85
n
85
SER
85
A
GLU
86
n
86
GLU
86
A
TYR
87
n
87
TYR
87
A
GLY
88
n
88
GLY
88
A
ASN
89
n
89
ASN
89
A
LEU
90
n
90
LEU
90
A
LYS
91
n
91
LYS
91
A
VAL
92
n
92
VAL
92
A
SER
93
n
93
SER
93
A
TRP
94
n
94
TRP
94
A
GLU
95
n
95
GLU
95
A
GLU
96
n
96
GLU
96
A
ALA
97
n
97
ALA
97
A
GLY
98
n
98
GLY
98
A
ASP
99
n
99
ASP
99
A
GLU
100
n
100
GLU
100
A
PRO
101
n
101
PRO
101
A
TYR
102
n
102
TYR
102
A
LEU
103
n
103
LEU
103
A
MET
104
n
104
MET
104
A
ALA
105
n
105
ALA
105
A
LYS
106
n
106
LYS
106
A
LEU
107
n
107
LEU
107
A
LEU
108
n
108
LEU
108
A
PRO
109
n
109
PRO
109
A
HIS
110
n
110
HIS
110
A
VAL
111
n
111
VAL
111
A
SER
112
n
112
SER
112
A
VAL
113
n
113
VAL
113
A
VAL
114
n
114
VAL
114
A
ALA
115
n
115
ALA
115
A
SER
116
n
116
SER
116
A
GLU
117
n
117
GLU
117
A
ASP
118
n
118
ASP
118
A
ARG
119
n
119
ARG
119
A
TYR
120
n
120
TYR
120
A
LYS
121
n
121
LYS
121
A
GLY
122
n
122
GLY
122
A
GLY
123
n
123
GLY
123
A
LEU
124
n
124
LEU
124
A
LEU
125
n
125
LEU
125
A
ALA
126
n
126
ALA
126
A
LEU
127
n
127
LEU
127
A
GLU
128
n
128
GLU
128
A
LYS
129
n
129
LYS
129
A
LEU
130
n
130
LEU
130
A
SER
131
n
131
SER
131
A
PRO
132
n
132
PRO
132
A
GLU
133
n
133
GLU
133
A
VAL
134
n
134
VAL
134
A
PHE
135
n
135
PHE
135
A
ILE
136
n
136
ILE
136
A
LEU
137
n
137
LEU
137
A
ASP
138
n
138
ASP
138
A
ASP
139
n
139
ASP
139
A
GLY
140
n
140
GLY
140
A
PHE
141
n
141
PHE
141
A
GLN
142
n
142
GLN
142
A
HIS
143
n
143
HIS
143
A
ARG
144
n
144
ARG
144
A
LYS
145
n
145
LYS
145
A
LEU
146
n
146
LEU
146
A
HIS
147
n
147
HIS
147
A
ARG
148
n
148
ARG
148
A
ASP
149
n
149
ASP
149
A
LEU
150
n
150
LEU
150
A
ASN
151
n
151
ASN
151
A
ILE
152
n
152
ILE
152
A
LEU
153
n
153
LEU
153
A
LEU
154
n
154
LEU
154
A
LEU
155
n
155
LEU
155
A
LYS
156
n
156
LYS
156
A
LYS
157
n
157
LYS
157
A
LYS
158
n
158
LYS
158
A
ASP
159
n
159
ASP
159
A
LEU
160
n
160
LEU
160
A
LYS
161
n
161
LYS
161
A
ASP
162
n
162
ASP
162
A
ARG
163
n
163
ARG
163
A
LEU
164
n
164
LEU
164
A
LEU
165
n
165
LEU
165
A
PRO
166
n
166
PRO
166
A
ALA
167
n
167
ALA
167
A
GLY
168
n
168
GLY
168
A
ASN
169
n
169
ASN
169
A
LEU
170
n
170
LEU
170
A
ARG
171
n
171
ARG
171
A
GLU
172
n
172
GLU
172
A
PRO
173
n
173
PRO
173
A
LEU
174
n
174
LEU
174
A
LYS
175
n
175
LYS
175
A
GLU
176
n
176
GLU
176
A
ILE
177
n
177
ILE
177
A
ARG
178
n
178
ARG
178
A
ARG
179
n
179
ARG
179
A
ALA
180
n
180
ALA
180
A
ASP
181
n
181
ASP
181
A
ALA
182
n
182
ALA
182
A
LEU
183
n
183
LEU
183
A
VAL
184
n
184
VAL
184
A
LEU
185
n
185
LEU
185
A
THR
186
n
186
THR
186
A
TYR
187
n
187
TYR
187
A
GLN
188
n
188
GLN
188
A
GLU
189
n
189
GLU
189
A
VAL
190
n
190
VAL
190
A
GLU
191
n
191
GLU
191
A
PRO
192
n
192
PRO
192
A
PHE
193
n
193
PHE
193
A
GLU
194
n
194
GLU
194
A
PHE
195
n
195
PHE
195
A
PHE
196
n
196
PHE
196
A
THR
197
n
197
THR
197
A
GLY
198
n
198
GLY
198
A
LYS
199
n
199
LYS
199
A
PRO
200
n
200
PRO
200
A
THR
201
n
201
THR
201
A
PHE
202
n
202
PHE
202
A
LYS
203
n
203
LYS
203
A
MET
204
n
204
MET
204
A
PHE
205
n
205
PHE
205
A
ARG
206
n
206
ARG
206
A
GLU
207
n
207
GLU
207
A
PHE
208
n
208
PHE
208
A
CYS
209
n
209
CYS
209
A
CYS
210
n
210
CYS
210
A
LEU
211
n
211
LEU
211
A
LEU
212
n
212
LEU
212
A
ASN
213
n
213
ASN
213
A
SER
214
n
214
SER
214
A
ASP
215
n
215
ASP
215
A
PHE
216
n
216
PHE
216
A
GLU
217
n
217
GLU
217
A
GLU
218
n
218
GLU
218
A
VAL
219
n
219
VAL
219
A
PRO
220
n
220
PRO
220
A
PHE
221
n
221
PHE
221
A
ASP
222
n
222
ASP
222
A
ILE
223
n
223
ILE
223
A
LEU
224
n
224
LEU
224
A
LYS
225
n
225
LYS
225
A
GLU
226
n
226
GLU
226
A
ARG
227
n
227
ARG
227
A
GLU
228
n
228
GLU
228
A
VAL
229
n
229
VAL
229
A
ILE
230
n
230
ILE
230
A
ALA
231
n
231
ALA
231
A
PHE
232
n
232
PHE
232
A
SER
233
n
233
SER
233
A
GLY
234
n
234
GLY
234
A
LEU
235
n
235
LEU
235
A
GLY
236
n
236
GLY
236
A
ASP
237
n
237
ASP
237
A
ASN
238
n
238
ASN
238
A
GLY
239
n
239
GLY
239
A
GLN
240
n
240
GLN
240
A
PHE
241
n
241
PHE
241
A
ARG
242
n
242
ARG
242
A
LYS
243
n
243
LYS
243
A
VAL
244
n
244
VAL
244
A
LEU
245
n
245
LEU
245
A
LYS
246
n
246
LYS
246
A
ASN
247
n
247
ASN
247
A
LEU
248
n
248
LEU
248
A
GLY
249
n
249
GLY
249
A
ILE
250
n
250
ILE
250
A
LYS
251
n
251
LYS
251
A
VAL
252
n
252
VAL
252
A
LYS
253
n
253
LYS
253
A
GLU
254
n
254
GLU
254
A
PHE
255
n
255
PHE
255
A
MET
256
n
256
MET
256
A
SER
257
n
257
SER
257
A
PHE
258
n
258
PHE
258
A
PRO
259
n
259
PRO
259
A
ASP
260
n
260
ASP
260
A
HIS
261
n
261
HIS
261
A
TYR
262
n
262
TYR
262
A
ASP
263
n
263
ASP
263
A
TYR
264
n
264
TYR
264
A
SER
265
n
265
SER
265
A
ASP
266
n
266
ASP
266
A
PHE
267
n
267
PHE
267
A
THR
268
n
268
THR
268
A
PRO
269
n
269
PRO
269
A
GLU
270
n
270
GLU
270
A
GLU
271
n
271
GLU
271
A
GLY
272
n
272
GLY
272
A
GLU
273
n
273
GLU
273
A
ILE
274
n
274
ILE
274
A
TYR
275
n
275
TYR
275
A
LEU
276
n
276
LEU
276
A
THR
277
n
277
THR
277
A
THR
278
n
278
THR
278
A
PRO
279
n
279
PRO
279
A
LYS
280
n
280
LYS
280
A
ASP
281
n
281
ASP
281
A
LEU
282
n
282
LEU
282
A
ILE
283
n
283
ILE
283
A
LYS
284
n
284
LYS
284
A
LEU
285
n
285
LEU
285
A
GLN
286
n
286
GLN
286
A
GLY
287
n
287
GLY
287
A
TYR
288
n
288
TYR
288
A
GLU
289
n
289
GLU
289
A
ASN
290
n
290
ASN
290
A
VAL
291
n
291
VAL
291
A
PHE
292
n
292
PHE
292
A
ALA
293
n
293
ALA
293
A
LEU
294
n
294
LEU
294
A
ASN
295
n
295
ASN
295
A
PHE
296
n
296
PHE
296
A
LYS
297
n
297
LYS
297
A
VAL
298
n
298
VAL
298
A
LYS
299
n
299
LYS
299
A
LEU
300
n
300
LEU
300
A
GLU
301
n
301
GLU
301
A
ARG
302
n
302
ARG
302
A
GLU
303
n
303
GLU
303
A
GLU
304
n
304
GLU
304
A
LYS
305
n
305
LYS
305
A
LEU
306
n
306
LEU
306
A
LYS
307
n
307
LYS
307
A
LYS
308
n
308
LYS
308
A
LEU
309
n
309
LEU
309
A
ILE
310
n
310
ILE
310
A
TYR
311
n
311
TYR
311
A
ARG
312
n
312
ARG
312
A
ILE
313
n
313
ILE
313
A
PHE
314
n
314
PHE
314
A
TYR
315
n
315
TYR
315
A
0.5447
0.0019
0.2725
1.0636
-0.5956
1.1302
0.0528
0.1036
0.1390
-0.0456
-0.1203
0.0997
-0.3113
-0.0146
0.0058
0.1933
0.0011
-0.0040
0.1320
0.0211
0.1351
refined
2.7303
2.8257
-22.8900
X-RAY DIFFRACTION
3.3043
-1.0816
0.5772
1.1885
1.3242
3.8221
-0.0747
-0.1117
0.2960
0.0398
0.0966
-0.2818
-0.1848
0.2665
-0.0291
0.1090
-0.0005
-0.0206
0.1300
0.0136
0.1474
refined
13.6160
-8.8667
-5.4441
X-RAY DIFFRACTION
1.1491
0.0785
-0.0475
1.4136
-0.2393
2.0613
0.0831
0.0137
0.1328
-0.0349
-0.0494
0.1359
-0.1627
-0.2045
-0.0209
0.0876
-0.0076
-0.0091
0.1096
0.0004
0.1072
refined
-0.5345
-4.7570
-12.5519
X-RAY DIFFRACTION
1.6604
0.6015
1.6158
2.0205
2.0019
3.5335
-0.1624
-0.3361
0.3174
0.1044
-0.0967
0.0834
-0.2028
-0.2128
0.2034
0.1944
-0.0071
-0.0193
0.2288
-0.0060
0.1903
refined
6.0836
-1.3487
9.2105
X-RAY DIFFRACTION
A
0
A
0
X-RAY DIFFRACTION
1
chain 'A' and (resid 1 through 50 )
A
0
A
0
X-RAY DIFFRACTION
2
chain 'A' and (resid 51 through 118 )
A
0
A
0
X-RAY DIFFRACTION
3
chain 'A' and (resid 119 through 212 )
A
0
A
0
X-RAY DIFFRACTION
4
chain 'A' and (resid 213 through 315 )
author_and_software_defined_assembly
PISA
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
ASN
89
A
O
ASN
89
A
N
GLU
86
A
N
GLU
86
A
N
LEU
82
A
N
LEU
82
A
O
ALA
115
A
O
ALA
115
A
O
SER
112
A
O
SER
112
A
N
ILE
69
A
N
ILE
69
A
N
LEU
70
A
N
LEU
70
A
O
ILE
136
A
O
ILE
136
A
O
PHE
135
A
O
PHE
135
A
N
ILE
39
A
N
ILE
39
A
N
GLY
42
A
N
GLY
42
A
O
LEU
154
A
O
LEU
154
A
N
LEU
155
A
N
LEU
155
A
O
THR
186
A
O
THR
186
A
N
LEU
185
A
N
LEU
185
A
O
PHE
202
A
O
PHE
202
A
N
LEU
211
A
N
LEU
211
A
O
VAL
219
A
O
VAL
219
A
O
ASN
89
A
O
ASN
89
A
N
GLU
86
A
N
GLU
86
A
N
LEU
82
A
N
LEU
82
A
O
ALA
115
A
O
ALA
115
A
O
SER
112
A
O
SER
112
A
N
ILE
69
A
N
ILE
69
A
N
LEU
70
A
N
LEU
70
A
O
ILE
136
A
O
ILE
136
A
O
PHE
135
A
O
PHE
135
A
N
ILE
39
A
N
ILE
39
A
N
GLY
42
A
N
GLY
42
A
O
LEU
154
A
O
LEU
154
A
N
LEU
155
A
N
LEU
155
A
O
THR
186
A
O
THR
186
A
N
LEU
185
A
N
LEU
185
A
O
PHE
202
A
O
PHE
202
A
N
CYS
210
A
N
CYS
210
A
O
ASN
295
A
O
ASN
295
A
O
PHE
292
A
O
PHE
292
A
N
THR
277
A
N
THR
277
A
O
LEU
276
A
O
LEU
276
A
N
PHE
232
A
N
PHE
232
A
N
SER
233
A
N
SER
233
A
O
PHE
258
A
O
PHE
258
1
A
TYR
87
39.58
52.23
153.840
30.2762
6.250
0.2104
0.1615
0.1661
0.1661
2.1994
24.5070
2017
21479
21479
9.3900
90.8500
1.000
0.500
0.2200
RANDOM
1
MOLECULAR REPLACEMENT
19.6400
0.6000
1.0000
PDB ENTRY 4EHX
ML
FLAT BULK SOLVENT MODEL
2.1994
24.5070
139
2781
60
0
2582
0.007
2702
1.162
3639
0.070
393
0.005
449
15.222
1051
0.2721
0.2095
2.2544
116
1240
1356
14
83.0000
0.2642
0.1987
2.3153
129
1293
1422
14
85.0000
0.2252
0.1884
2.3834
148
1292
1440
14
87.0000
0.2508
0.1684
2.4603
131
1314
1445
14
87.0000
0.2261
0.1765
2.5481
145
1331
1476
14
89.0000
0.2395
0.1674
2.6500
142
1381
1523
14
91.0000
0.2462
0.1680
2.7705
133
1380
1513
14
91.0000
0.2351
0.1754
2.9163
155
1417
1572
14
93.0000
0.2032
0.1614
3.0987
143
1427
1570
14
93.0000
0.2079
0.1631
3.3374
156
1459
1615
14
96.0000
0.2440
0.1512
3.6723
144
1474
1618
14
95.0000
0.1783
0.1366
4.2013
152
1476
1628
14
95.0000
0.1756
0.1369
5.2845
164
1472
1636
14
95.0000
0.1935
0.1764
24.5086
159
1506
1665
14
91.0000
2.199
50.000
4ITM
23700
23000
2.0
2.0
0.073
0.967
1
8.300
4.000
97.100
0.420
2.199
2.240
1138
0.856
1
3.600
98.400
0.382
2.240
2.280
1113
0.889
1
3.800
97.000
0.372
2.280
2.320
1168
0.966
1
3.900
99.500
0.328
2.320
2.370
1131
0.890
1
4.000
97.900
0.298
2.370
2.420
1158
0.932
1
4.100
98.700
0.258
2.420
2.480
1126
0.897
1
4.100
98.500
0.238
2.480
2.540
1157
0.886
1
4.100
97.600
0.209
2.540
2.610
1146
0.954
1
4.100
98.200
0.187
2.610
2.690
1135
0.948
1
4.100
98.500
0.165
2.690
2.770
1153
0.940
1
4.100
97.700
0.138
2.770
2.870
1158
1.001
1
4.100
97.400
0.102
2.870
2.990
1154
0.942
1
4.100
97.300
0.094
2.990
3.120
1143
1.002
1
4.100
97.300
0.077
3.120
3.290
1145
1.131
1
4.100
97.300
0.068
3.290
3.490
1152
1.366
1
4.100
97.100
0.059
3.490
3.760
1142
1.459
1
4.100
96.100
0.043
3.760
4.140
1155
1.093
1
4.100
96.700
0.033
4.140
4.740
1160
0.899
1
4.100
95.600
0.026
4.740
5.970
1168
0.654
1
4.100
94.900
0.020
5.970
50.000
1198
0.589
1
3.900
90.800
data reduction
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
DENZO
package
data scaling
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
SCALEPACK
package
refinement
Paul D. Adams
PDAdams@lbl.gov
C++
http://www.phenix-online.org/
PHENIX
package
1.8_1066
data extraction
PDB
deposit@deposit.rcsb.org
April 22, 2011
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.11
data collection
SERGUI
data reduction
HKL-2000
data scaling
HKL-2000
phasing
PHASER
Crystal structure of "apo" form LpxK from Aquifex aeolicus in complex with ATP at 2.2 angstrom resolution
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
6
N
N
A
LEU
2
A
LEU
2
HELX_P
A
SER
5
A
SER
5
5
1
4
A
LEU
6
A
LEU
6
HELX_P
A
LYS
26
A
LYS
26
1
2
21
A
GLY
50
A
GLY
50
HELX_P
A
LEU
62
A
LEU
62
1
3
13
A
SER
93
A
SER
93
HELX_P
A
GLY
98
A
GLY
98
1
4
6
A
GLY
98
A
GLY
98
HELX_P
A
LEU
108
A
LEU
108
1
5
11
A
ASP
118
A
ASP
118
HELX_P
A
LEU
130
A
LEU
130
1
6
13
A
LYS
158
A
LYS
158
HELX_P
A
ASP
162
A
ASP
162
5
7
5
A
PRO
173
A
PRO
173
HELX_P
A
ALA
180
A
ALA
180
5
8
8
A
PRO
220
A
PRO
220
HELX_P
A
LYS
225
A
LYS
225
5
9
6
A
ASP
237
A
ASP
237
HELX_P
A
LEU
248
A
LEU
248
1
10
12
A
THR
278
A
THR
278
HELX_P
A
ILE
283
A
ILE
283
1
11
6
A
GLU
303
A
GLU
303
HELX_P
A
ILE
313
A
ILE
313
1
12
11
TRANSFERASE
membrane protein, kinase, lipid A, P-loop, P-loop containing nucleoside triphosphate hydrolase, disaccharide-1-phosphate 4'-kinase, membrane, TRANSFERASE, ipid metabolism, tetraacyldisaccharide 4'-kinase
A
LEU
165
A
LEU
165
1
A
PRO
166
A
PRO
166
-4.74
LPXK_AQUAE
UNP
1
1
O67572
MLRSSLLPFSYLYEKIINFRNTLYDKGFLKIKKLPVPVISVGNLSVGGSGKTSFVMYLADLLKDKRVCILSRGYKRKSKG
TLIVSEYGNLKVSWEEAGDEPYLMAKLLPHVSVVASEDRYKGGLLALEKLSPEVFILDDGFQHRKLHRDLNILLLKKKDL
KDRLLPAGNLREPLKEIRRADALVLTYQEVEPFEFFTGKPTFKMFREFCCLLNSDFEEVPFDILKEREVIAFSGLGDNGQ
FRKVLKNLGIKVKEFMSFPDHYDYSDFTPEEGEIYLTTPKDLIKLQGYENVFALNFKVKLEREEKLKKLIYRIFY
1
315
4ITM
1
315
O67572
A
1
1
315
10
13
anti-parallel
anti-parallel
parallel
parallel
parallel
parallel
parallel
parallel
anti-parallel
anti-parallel
anti-parallel
parallel
parallel
parallel
parallel
parallel
parallel
anti-parallel
parallel
parallel
parallel
A
ASN
89
A
ASN
89
A
LEU
90
A
LEU
90
A
LEU
82
A
LEU
82
A
GLU
86
A
GLU
86
A
SER
112
A
SER
112
A
ALA
115
A
ALA
115
A
VAL
67
A
VAL
67
A
SER
71
A
SER
71
A
VAL
134
A
VAL
134
A
LEU
137
A
LEU
137
A
VAL
38
A
VAL
38
A
ASN
43
A
ASN
43
A
LEU
150
A
LEU
150
A
LYS
156
A
LYS
156
A
ALA
182
A
ALA
182
A
THR
186
A
THR
186
A
THR
201
A
THR
201
A
LEU
212
A
LEU
212
A
GLU
218
A
GLU
218
A
VAL
219
A
VAL
219
A
ASN
89
A
ASN
89
A
LEU
90
A
LEU
90
A
LEU
82
A
LEU
82
A
GLU
86
A
GLU
86
A
SER
112
A
SER
112
A
ALA
115
A
ALA
115
A
VAL
67
A
VAL
67
A
SER
71
A
SER
71
A
VAL
134
A
VAL
134
A
LEU
137
A
LEU
137
A
VAL
38
A
VAL
38
A
ASN
43
A
ASN
43
A
LEU
150
A
LEU
150
A
LYS
156
A
LYS
156
A
ALA
182
A
ALA
182
A
THR
186
A
THR
186
A
THR
201
A
THR
201
A
LEU
212
A
LEU
212
A
VAL
291
A
VAL
291
A
LEU
300
A
LEU
300
A
TYR
275
A
TYR
275
A
THR
277
A
THR
277
A
VAL
229
A
VAL
229
A
GLY
234
A
GLY
234
A
VAL
252
A
VAL
252
A
PHE
258
A
PHE
258
BINDING SITE FOR RESIDUE ATP A 401
A
ATP
401
Software
21
BINDING SITE FOR RESIDUE EPE A 402
A
EPE
402
Software
7
BINDING SITE FOR RESIDUE MPD A 403
A
MPD
403
Software
5
BINDING SITE FOR RESIDUE GOL A 404
A
GOL
404
Software
4
A
GLY
48
A
GLY
48
21
1_555
A
SER
49
A
SER
49
21
1_555
A
GLY
50
A
GLY
50
21
1_555
A
LYS
51
A
LYS
51
21
1_555
A
THR
52
A
THR
52
21
1_555
A
SER
53
A
SER
53
21
1_555
A
MET
56
A
MET
56
21
1_555
A
LEU
103
A
LEU
103
21
1_555
A
TYR
187
A
TYR
187
21
1_555
A
ARG
206
A
ARG
206
21
1_555
A
GLN
240
A
GLN
240
21
1_555
A
PRO
279
A
PRO
279
21
1_555
A
LEU
294
A
LEU
294
21
1_555
A
PHE
296
A
PHE
296
21
1_555
A
VAL
298
A
VAL
298
21
1_555
A
MPD
403
D
MPD
21
1_555
A
GOL
404
E
GOL
21
1_555
A
HOH
501
F
HOH
21
1_555
A
HOH
529
F
HOH
21
1_555
A
HOH
550
F
HOH
21
1_555
A
HOH
589
F
HOH
21
1_555
A
ILE
17
A
ILE
17
7
1_555
A
ARG
20
A
ARG
20
7
1_555
A
ARG
72
A
ARG
72
7
1_555
A
ARG
119
A
ARG
119
7
1_555
A
HIS
143
A
HIS
143
7
1_555
A
HOH
507
F
HOH
7
1_555
A
HOH
561
F
HOH
7
1_555
A
GLU
189
A
GLU
189
5
1_555
A
ARG
206
A
ARG
206
5
1_555
A
GLN
240
A
GLN
240
5
1_555
A
PHE
296
A
PHE
296
5
1_555
A
ATP
401
B
ATP
5
1_555
A
PRO
279
A
PRO
279
4
1_555
A
LEU
294
A
LEU
294
4
1_555
A
ATP
401
B
ATP
4
1_555
A
HOH
549
F
HOH
4
1_555
19
P 21 21 21