0.014838
0.000000
0.000000
0.000000
0.014838
0.000000
0.000000
0.000000
0.009864
0.00000
0.00000
0.00000
Joint Center for Structural Genomics (JCSG)
Partnership for T-Cell Biology (TCELL)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
16
90.000
90.000
90.000
67.395
67.395
101.380
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Cl -1
35.453
CHLORIDE ION
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 Se
196.106
n
SELENOMETHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
To be published
0353
Crystal structure of a polyadenylate-binding protein 3 (PABPC3) from Homo sapiens at 2.30 A resolution
10.2210/pdb4ive/pdb
pdb_00004ive
100
1
KOHZU: Double Crystal Si(111)
CCD
2012-10-17
ADSC QUANTUM 315
Double Crystal Si(111)
MAD
M
x-ray
1
0.979493
1.0
0.918401
1.0
0.979284
1.0
8.2.2
ALS
0.979493,0.918401,0.979284
SYNCHROTRON
ALS BEAMLINE 8.2.2
10708.643
Polyadenylate-binding protein 3
PABC domain residues 535-631
4
man
polymer
35.453
CHLORIDE ION
2
syn
non-polymer
18.015
water
133
nat
water
PABP-3, Poly(A)-binding protein 3, Testis-specific poly(A)-binding protein
no
yes
GQGQETLTASRLASAPPQKQKQ(MSE)LGERLFPLIQA(MSE)HPTLAGKITG(MSE)LLEIDNSELLY(MSE)LESPES
LRSKVDEAVAVLQAHQAKEATQKAVNSATGVPTV
GQGQETLTASRLASAPPQKQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLYMLESPESLRSKVDEAVAVLQAHQ
AKEATQKAVNSATGVPTV
A,B,C,D
JCSG-424003
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
sample
BC027617, PABP3, PABPC3, PABPL3
9606
Homo sapiens
562
Escherichia Coli
PB1
Plasmid
SpeedET
1
2.69
54.23
VAPOR DIFFUSION, SITTING DROP
5.62
26.00% polyethylene glycol 6000, 0.1M MES pH 5.62, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K
277
Joint Center for Structural Genomics
JCSG
PSI:Biology
Partnership for T-Cell Biology
TCELL
PSI:Biology
software
database_2
struct_conn
struct_ref_seq_dif
struct_site
repository
Initial release
Refinement description
Database references
Derived calculations
1
0
2013-02-06
1
1
2017-11-15
1
2
2023-02-01
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.pdbx_leaving_atom_flag
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Y
RCSB
Y
RCSB
2013-01-22
REL
REL
CL
CHLORIDE ION
HOH
water
THE CONSTRUCT (535-631) WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE.
CL
636
2
CL
CL
701
A
CL
635
2
CL
CL
701
C
HOH
645
3
HOH
HOH
801
A
HOH
647
3
HOH
HOH
802
A
HOH
648
3
HOH
HOH
803
A
HOH
651
3
HOH
HOH
804
A
HOH
654
3
HOH
HOH
805
A
HOH
659
3
HOH
HOH
806
A
HOH
660
3
HOH
HOH
807
A
HOH
661
3
HOH
HOH
808
A
HOH
666
3
HOH
HOH
809
A
HOH
668
3
HOH
HOH
810
A
HOH
674
3
HOH
HOH
811
A
HOH
675
3
HOH
HOH
812
A
HOH
677
3
HOH
HOH
813
A
HOH
705
3
HOH
HOH
814
A
HOH
706
3
HOH
HOH
815
A
HOH
718
3
HOH
HOH
816
A
HOH
725
3
HOH
HOH
817
A
HOH
726
3
HOH
HOH
818
A
HOH
727
3
HOH
HOH
819
A
HOH
728
3
HOH
HOH
820
A
HOH
730
3
HOH
HOH
821
A
HOH
732
3
HOH
HOH
822
A
HOH
746
3
HOH
HOH
823
A
HOH
750
3
HOH
HOH
824
A
HOH
751
3
HOH
HOH
825
A
HOH
753
3
HOH
HOH
826
A
HOH
755
3
HOH
HOH
827
A
HOH
759
3
HOH
HOH
828
A
HOH
760
3
HOH
HOH
829
A
HOH
764
3
HOH
HOH
830
A
HOH
765
3
HOH
HOH
831
A
HOH
766
3
HOH
HOH
832
A
HOH
637
3
HOH
HOH
701
B
HOH
639
3
HOH
HOH
702
B
HOH
642
3
HOH
HOH
703
B
HOH
643
3
HOH
HOH
704
B
HOH
658
3
HOH
HOH
705
B
HOH
664
3
HOH
HOH
706
B
HOH
665
3
HOH
HOH
707
B
HOH
667
3
HOH
HOH
708
B
HOH
670
3
HOH
HOH
709
B
HOH
673
3
HOH
HOH
710
B
HOH
682
3
HOH
HOH
711
B
HOH
691
3
HOH
HOH
712
B
HOH
693
3
HOH
HOH
713
B
HOH
694
3
HOH
HOH
714
B
HOH
698
3
HOH
HOH
715
B
HOH
700
3
HOH
HOH
716
B
HOH
702
3
HOH
HOH
717
B
HOH
711
3
HOH
HOH
718
B
HOH
716
3
HOH
HOH
719
B
HOH
734
3
HOH
HOH
720
B
HOH
735
3
HOH
HOH
721
B
HOH
739
3
HOH
HOH
722
B
HOH
741
3
HOH
HOH
723
B
HOH
744
3
HOH
HOH
724
B
HOH
745
3
HOH
HOH
725
B
HOH
747
3
HOH
HOH
726
B
HOH
748
3
HOH
HOH
727
B
HOH
749
3
HOH
HOH
728
B
HOH
757
3
HOH
HOH
729
B
HOH
763
3
HOH
HOH
730
B
HOH
640
3
HOH
HOH
801
C
HOH
641
3
HOH
HOH
802
C
HOH
644
3
HOH
HOH
803
C
HOH
646
3
HOH
HOH
804
C
HOH
655
3
HOH
HOH
805
C
HOH
656
3
HOH
HOH
806
C
HOH
671
3
HOH
HOH
807
C
HOH
672
3
HOH
HOH
808
C
HOH
678
3
HOH
HOH
809
C
HOH
680
3
HOH
HOH
810
C
HOH
681
3
HOH
HOH
811
C
HOH
685
3
HOH
HOH
812
C
HOH
687
3
HOH
HOH
813
C
HOH
689
3
HOH
HOH
814
C
HOH
690
3
HOH
HOH
815
C
HOH
695
3
HOH
HOH
816
C
HOH
699
3
HOH
HOH
817
C
HOH
703
3
HOH
HOH
818
C
HOH
709
3
HOH
HOH
819
C
HOH
713
3
HOH
HOH
820
C
HOH
714
3
HOH
HOH
821
C
HOH
717
3
HOH
HOH
822
C
HOH
719
3
HOH
HOH
823
C
HOH
720
3
HOH
HOH
824
C
HOH
722
3
HOH
HOH
825
C
HOH
724
3
HOH
HOH
826
C
HOH
733
3
HOH
HOH
827
C
HOH
736
3
HOH
HOH
828
C
HOH
740
3
HOH
HOH
829
C
HOH
742
3
HOH
HOH
830
C
HOH
743
3
HOH
HOH
831
C
HOH
752
3
HOH
HOH
832
C
HOH
756
3
HOH
HOH
833
C
HOH
758
3
HOH
HOH
834
C
HOH
761
3
HOH
HOH
835
C
HOH
762
3
HOH
HOH
836
C
HOH
769
3
HOH
HOH
837
C
HOH
638
3
HOH
HOH
701
D
HOH
649
3
HOH
HOH
702
D
HOH
650
3
HOH
HOH
703
D
HOH
652
3
HOH
HOH
704
D
HOH
653
3
HOH
HOH
705
D
HOH
657
3
HOH
HOH
706
D
HOH
662
3
HOH
HOH
707
D
HOH
663
3
HOH
HOH
708
D
HOH
669
3
HOH
HOH
709
D
HOH
676
3
HOH
HOH
710
D
HOH
679
3
HOH
HOH
711
D
HOH
683
3
HOH
HOH
712
D
HOH
684
3
HOH
HOH
713
D
HOH
686
3
HOH
HOH
714
D
HOH
688
3
HOH
HOH
715
D
HOH
692
3
HOH
HOH
716
D
HOH
696
3
HOH
HOH
717
D
HOH
697
3
HOH
HOH
718
D
HOH
701
3
HOH
HOH
719
D
HOH
704
3
HOH
HOH
720
D
HOH
707
3
HOH
HOH
721
D
HOH
708
3
HOH
HOH
722
D
HOH
710
3
HOH
HOH
723
D
HOH
712
3
HOH
HOH
724
D
HOH
715
3
HOH
HOH
725
D
HOH
721
3
HOH
HOH
726
D
HOH
723
3
HOH
HOH
727
D
HOH
729
3
HOH
HOH
728
D
HOH
731
3
HOH
HOH
729
D
HOH
737
3
HOH
HOH
730
D
HOH
738
3
HOH
HOH
731
D
HOH
754
3
HOH
HOH
732
D
HOH
767
3
HOH
HOH
733
D
HOH
768
3
HOH
HOH
734
D
n
1
0
A
n
2
535
A
n
3
536
A
GLN
537
n
4
GLN
537
A
GLU
538
n
5
GLU
538
A
THR
539
n
6
THR
539
A
LEU
540
n
7
LEU
540
A
THR
541
n
8
THR
541
A
ALA
542
n
9
ALA
542
A
SER
543
n
10
SER
543
A
ARG
544
n
11
ARG
544
A
LEU
545
n
12
LEU
545
A
ALA
546
n
13
ALA
546
A
SER
547
n
14
SER
547
A
ALA
548
n
15
ALA
548
A
PRO
549
n
16
PRO
549
A
PRO
550
n
17
PRO
550
A
GLN
551
n
18
GLN
551
A
LYS
552
n
19
LYS
552
A
GLN
553
n
20
GLN
553
A
LYS
554
n
21
LYS
554
A
GLN
555
n
22
GLN
555
A
MSE
556
n
23
MSE
556
A
LEU
557
n
24
LEU
557
A
GLY
558
n
25
GLY
558
A
GLU
559
n
26
GLU
559
A
ARG
560
n
27
ARG
560
A
LEU
561
n
28
LEU
561
A
PHE
562
n
29
PHE
562
A
PRO
563
n
30
PRO
563
A
LEU
564
n
31
LEU
564
A
ILE
565
n
32
ILE
565
A
GLN
566
n
33
GLN
566
A
ALA
567
n
34
ALA
567
A
MSE
568
n
35
MSE
568
A
HIS
569
n
36
HIS
569
A
PRO
570
n
37
PRO
570
A
THR
571
n
38
THR
571
A
LEU
572
n
39
LEU
572
A
ALA
573
n
40
ALA
573
A
GLY
574
n
41
GLY
574
A
LYS
575
n
42
LYS
575
A
ILE
576
n
43
ILE
576
A
THR
577
n
44
THR
577
A
GLY
578
n
45
GLY
578
A
MSE
579
n
46
MSE
579
A
LEU
580
n
47
LEU
580
A
LEU
581
n
48
LEU
581
A
GLU
582
n
49
GLU
582
A
ILE
583
n
50
ILE
583
A
ASP
584
n
51
ASP
584
A
ASN
585
n
52
ASN
585
A
SER
586
n
53
SER
586
A
GLU
587
n
54
GLU
587
A
LEU
588
n
55
LEU
588
A
LEU
589
n
56
LEU
589
A
TYR
590
n
57
TYR
590
A
MSE
591
n
58
MSE
591
A
LEU
592
n
59
LEU
592
A
GLU
593
n
60
GLU
593
A
SER
594
n
61
SER
594
A
PRO
595
n
62
PRO
595
A
GLU
596
n
63
GLU
596
A
SER
597
n
64
SER
597
A
LEU
598
n
65
LEU
598
A
ARG
599
n
66
ARG
599
A
SER
600
n
67
SER
600
A
LYS
601
n
68
LYS
601
A
VAL
602
n
69
VAL
602
A
ASP
603
n
70
ASP
603
A
GLU
604
n
71
GLU
604
A
ALA
605
n
72
ALA
605
A
VAL
606
n
73
VAL
606
A
ALA
607
n
74
ALA
607
A
VAL
608
n
75
VAL
608
A
LEU
609
n
76
LEU
609
A
GLN
610
n
77
GLN
610
A
ALA
611
n
78
ALA
611
A
HIS
612
n
79
HIS
612
A
n
80
613
A
n
81
614
A
n
82
615
A
n
83
616
A
n
84
617
A
n
85
618
A
n
86
619
A
n
87
620
A
n
88
621
A
n
89
622
A
n
90
623
A
n
91
624
A
n
92
625
A
n
93
626
A
n
94
627
A
n
95
628
A
n
96
629
A
n
97
630
A
n
98
631
A
n
1
0
B
n
2
535
B
n
3
536
B
n
4
537
B
GLU
538
n
5
GLU
538
B
THR
539
n
6
THR
539
B
LEU
540
n
7
LEU
540
B
THR
541
n
8
THR
541
B
ALA
542
n
9
ALA
542
B
SER
543
n
10
SER
543
B
ARG
544
n
11
ARG
544
B
LEU
545
n
12
LEU
545
B
ALA
546
n
13
ALA
546
B
SER
547
n
14
SER
547
B
ALA
548
n
15
ALA
548
B
PRO
549
n
16
PRO
549
B
PRO
550
n
17
PRO
550
B
GLN
551
n
18
GLN
551
B
LYS
552
n
19
LYS
552
B
GLN
553
n
20
GLN
553
B
LYS
554
n
21
LYS
554
B
GLN
555
n
22
GLN
555
B
MSE
556
n
23
MSE
556
B
LEU
557
n
24
LEU
557
B
GLY
558
n
25
GLY
558
B
GLU
559
n
26
GLU
559
B
ARG
560
n
27
ARG
560
B
LEU
561
n
28
LEU
561
B
PHE
562
n
29
PHE
562
B
PRO
563
n
30
PRO
563
B
LEU
564
n
31
LEU
564
B
ILE
565
n
32
ILE
565
B
GLN
566
n
33
GLN
566
B
ALA
567
n
34
ALA
567
B
MSE
568
n
35
MSE
568
B
HIS
569
n
36
HIS
569
B
PRO
570
n
37
PRO
570
B
THR
571
n
38
THR
571
B
LEU
572
n
39
LEU
572
B
ALA
573
n
40
ALA
573
B
GLY
574
n
41
GLY
574
B
LYS
575
n
42
LYS
575
B
ILE
576
n
43
ILE
576
B
THR
577
n
44
THR
577
B
GLY
578
n
45
GLY
578
B
MSE
579
n
46
MSE
579
B
LEU
580
n
47
LEU
580
B
LEU
581
n
48
LEU
581
B
GLU
582
n
49
GLU
582
B
ILE
583
n
50
ILE
583
B
ASP
584
n
51
ASP
584
B
ASN
585
n
52
ASN
585
B
SER
586
n
53
SER
586
B
GLU
587
n
54
GLU
587
B
LEU
588
n
55
LEU
588
B
LEU
589
n
56
LEU
589
B
TYR
590
n
57
TYR
590
B
MSE
591
n
58
MSE
591
B
LEU
592
n
59
LEU
592
B
GLU
593
n
60
GLU
593
B
SER
594
n
61
SER
594
B
PRO
595
n
62
PRO
595
B
GLU
596
n
63
GLU
596
B
SER
597
n
64
SER
597
B
LEU
598
n
65
LEU
598
B
ARG
599
n
66
ARG
599
B
SER
600
n
67
SER
600
B
LYS
601
n
68
LYS
601
B
VAL
602
n
69
VAL
602
B
ASP
603
n
70
ASP
603
B
GLU
604
n
71
GLU
604
B
ALA
605
n
72
ALA
605
B
VAL
606
n
73
VAL
606
B
ALA
607
n
74
ALA
607
B
VAL
608
n
75
VAL
608
B
LEU
609
n
76
LEU
609
B
GLN
610
n
77
GLN
610
B
ALA
611
n
78
ALA
611
B
HIS
612
n
79
HIS
612
B
GLN
613
n
80
GLN
613
B
ALA
614
n
81
ALA
614
B
n
82
615
B
n
83
616
B
n
84
617
B
n
85
618
B
n
86
619
B
n
87
620
B
n
88
621
B
n
89
622
B
n
90
623
B
n
91
624
B
n
92
625
B
n
93
626
B
n
94
627
B
n
95
628
B
n
96
629
B
n
97
630
B
n
98
631
B
n
1
0
C
n
2
535
C
n
3
536
C
n
4
537
C
GLU
538
n
5
GLU
538
C
THR
539
n
6
THR
539
C
LEU
540
n
7
LEU
540
C
THR
541
n
8
THR
541
C
ALA
542
n
9
ALA
542
C
SER
543
n
10
SER
543
C
ARG
544
n
11
ARG
544
C
LEU
545
n
12
LEU
545
C
ALA
546
n
13
ALA
546
C
SER
547
n
14
SER
547
C
ALA
548
n
15
ALA
548
C
PRO
549
n
16
PRO
549
C
PRO
550
n
17
PRO
550
C
GLN
551
n
18
GLN
551
C
LYS
552
n
19
LYS
552
C
GLN
553
n
20
GLN
553
C
LYS
554
n
21
LYS
554
C
GLN
555
n
22
GLN
555
C
MSE
556
n
23
MSE
556
C
LEU
557
n
24
LEU
557
C
GLY
558
n
25
GLY
558
C
GLU
559
n
26
GLU
559
C
ARG
560
n
27
ARG
560
C
LEU
561
n
28
LEU
561
C
PHE
562
n
29
PHE
562
C
PRO
563
n
30
PRO
563
C
LEU
564
n
31
LEU
564
C
ILE
565
n
32
ILE
565
C
GLN
566
n
33
GLN
566
C
ALA
567
n
34
ALA
567
C
MSE
568
n
35
MSE
568
C
HIS
569
n
36
HIS
569
C
PRO
570
n
37
PRO
570
C
THR
571
n
38
THR
571
C
LEU
572
n
39
LEU
572
C
ALA
573
n
40
ALA
573
C
GLY
574
n
41
GLY
574
C
LYS
575
n
42
LYS
575
C
ILE
576
n
43
ILE
576
C
THR
577
n
44
THR
577
C
GLY
578
n
45
GLY
578
C
MSE
579
n
46
MSE
579
C
LEU
580
n
47
LEU
580
C
LEU
581
n
48
LEU
581
C
GLU
582
n
49
GLU
582
C
ILE
583
n
50
ILE
583
C
ASP
584
n
51
ASP
584
C
ASN
585
n
52
ASN
585
C
SER
586
n
53
SER
586
C
GLU
587
n
54
GLU
587
C
LEU
588
n
55
LEU
588
C
LEU
589
n
56
LEU
589
C
TYR
590
n
57
TYR
590
C
MSE
591
n
58
MSE
591
C
LEU
592
n
59
LEU
592
C
GLU
593
n
60
GLU
593
C
SER
594
n
61
SER
594
C
PRO
595
n
62
PRO
595
C
GLU
596
n
63
GLU
596
C
SER
597
n
64
SER
597
C
LEU
598
n
65
LEU
598
C
ARG
599
n
66
ARG
599
C
SER
600
n
67
SER
600
C
LYS
601
n
68
LYS
601
C
VAL
602
n
69
VAL
602
C
ASP
603
n
70
ASP
603
C
GLU
604
n
71
GLU
604
C
ALA
605
n
72
ALA
605
C
VAL
606
n
73
VAL
606
C
ALA
607
n
74
ALA
607
C
VAL
608
n
75
VAL
608
C
LEU
609
n
76
LEU
609
C
GLN
610
n
77
GLN
610
C
ALA
611
n
78
ALA
611
C
HIS
612
n
79
HIS
612
C
GLN
613
n
80
GLN
613
C
n
81
614
C
n
82
615
C
n
83
616
C
n
84
617
C
n
85
618
C
n
86
619
C
n
87
620
C
n
88
621
C
n
89
622
C
n
90
623
C
n
91
624
C
n
92
625
C
n
93
626
C
n
94
627
C
n
95
628
C
n
96
629
C
n
97
630
C
n
98
631
C
n
1
0
D
n
2
535
D
n
3
536
D
n
4
537
D
GLU
538
n
5
GLU
538
D
THR
539
n
6
THR
539
D
LEU
540
n
7
LEU
540
D
THR
541
n
8
THR
541
D
ALA
542
n
9
ALA
542
D
SER
543
n
10
SER
543
D
ARG
544
n
11
ARG
544
D
LEU
545
n
12
LEU
545
D
ALA
546
n
13
ALA
546
D
SER
547
n
14
SER
547
D
ALA
548
n
15
ALA
548
D
PRO
549
n
16
PRO
549
D
PRO
550
n
17
PRO
550
D
GLN
551
n
18
GLN
551
D
LYS
552
n
19
LYS
552
D
GLN
553
n
20
GLN
553
D
LYS
554
n
21
LYS
554
D
GLN
555
n
22
GLN
555
D
MSE
556
n
23
MSE
556
D
LEU
557
n
24
LEU
557
D
GLY
558
n
25
GLY
558
D
GLU
559
n
26
GLU
559
D
ARG
560
n
27
ARG
560
D
LEU
561
n
28
LEU
561
D
PHE
562
n
29
PHE
562
D
PRO
563
n
30
PRO
563
D
LEU
564
n
31
LEU
564
D
ILE
565
n
32
ILE
565
D
GLN
566
n
33
GLN
566
D
ALA
567
n
34
ALA
567
D
MSE
568
n
35
MSE
568
D
HIS
569
n
36
HIS
569
D
PRO
570
n
37
PRO
570
D
THR
571
n
38
THR
571
D
LEU
572
n
39
LEU
572
D
ALA
573
n
40
ALA
573
D
GLY
574
n
41
GLY
574
D
LYS
575
n
42
LYS
575
D
ILE
576
n
43
ILE
576
D
THR
577
n
44
THR
577
D
GLY
578
n
45
GLY
578
D
MSE
579
n
46
MSE
579
D
LEU
580
n
47
LEU
580
D
LEU
581
n
48
LEU
581
D
GLU
582
n
49
GLU
582
D
ILE
583
n
50
ILE
583
D
ASP
584
n
51
ASP
584
D
ASN
585
n
52
ASN
585
D
SER
586
n
53
SER
586
D
GLU
587
n
54
GLU
587
D
LEU
588
n
55
LEU
588
D
LEU
589
n
56
LEU
589
D
TYR
590
n
57
TYR
590
D
MSE
591
n
58
MSE
591
D
LEU
592
n
59
LEU
592
D
GLU
593
n
60
GLU
593
D
SER
594
n
61
SER
594
D
PRO
595
n
62
PRO
595
D
GLU
596
n
63
GLU
596
D
SER
597
n
64
SER
597
D
LEU
598
n
65
LEU
598
D
ARG
599
n
66
ARG
599
D
SER
600
n
67
SER
600
D
LYS
601
n
68
LYS
601
D
VAL
602
n
69
VAL
602
D
ASP
603
n
70
ASP
603
D
GLU
604
n
71
GLU
604
D
ALA
605
n
72
ALA
605
D
VAL
606
n
73
VAL
606
D
ALA
607
n
74
ALA
607
D
VAL
608
n
75
VAL
608
D
LEU
609
n
76
LEU
609
D
GLN
610
n
77
GLN
610
D
ALA
611
n
78
ALA
611
D
HIS
612
n
79
HIS
612
D
GLN
613
n
80
GLN
613
D
n
81
614
D
n
82
615
D
n
83
616
D
n
84
617
D
n
85
618
D
n
86
619
D
n
87
620
D
n
88
621
D
n
89
622
D
n
90
623
D
n
91
624
D
n
92
625
D
n
93
626
D
n
94
627
D
n
95
628
D
n
96
629
D
n
97
630
D
n
98
631
D
5.2051
-0.5073
-2.9104
2.7463
1.7077
8.3043
-0.1195
0.4790
-0.0245
0.0176
0.0914
0.2472
-0.0230
-0.4441
0.0281
-0.1722
0.0411
0.0436
-0.0079
0.0104
-0.1571
refined
32.5961
5.2067
34.9959
X-RAY DIFFRACTION
4.5334
-0.1746
-1.3191
2.0930
1.3940
8.3155
0.1601
0.5442
0.2683
-0.2480
-0.3809
0.2485
-0.4700
-0.5442
0.2208
-0.2594
0.1520
-0.0471
0.1354
-0.0262
-0.1581
refined
14.0336
10.1033
40.7462
X-RAY DIFFRACTION
4.8886
-2.6500
-0.6239
7.5299
-0.0312
4.2650
-0.0234
-0.0686
-0.5442
0.5297
-0.1305
0.4828
-0.1313
-0.2367
0.1540
-0.1353
0.0207
0.0392
-0.1298
-0.0395
-0.1187
refined
12.4094
14.5409
67.0452
X-RAY DIFFRACTION
1.7851
-0.8429
0.1631
2.7042
-1.7318
8.3155
-0.0432
-0.0238
-0.0661
-0.0481
-0.3216
-0.2696
0.2565
0.5148
0.3648
-0.1614
0.0313
0.0315
-0.0136
0.0475
-0.0624
refined
27.6101
2.7740
61.1619
X-RAY DIFFRACTION
A
537
A
612
X-RAY DIFFRACTION
1
{A|537 - 612}
B
538
B
614
X-RAY DIFFRACTION
2
{B|538 - 614}
C
538
C
613
X-RAY DIFFRACTION
3
{C|538 - 613}
D
538
D
613
X-RAY DIFFRACTION
4
{D|538 - 613}
author_and_software_defined_assembly
PISA
4
tetrameric
software_defined_assembly
PISA
2
dimeric
software_defined_assembly
PISA
2
dimeric
author_defined_assembly
1
monomeric
author_defined_assembly
1
monomeric
author_defined_assembly
1
monomeric
author_defined_assembly
1
monomeric
5510
-40
14880
1710
-15
8490
1710
-15
8470
A
MSE
556
SELENOMETHIONINE
A
MSE
23
MET
A
MSE
568
SELENOMETHIONINE
A
MSE
35
MET
A
MSE
579
SELENOMETHIONINE
A
MSE
46
MET
A
MSE
591
SELENOMETHIONINE
A
MSE
58
MET
B
MSE
556
SELENOMETHIONINE
B
MSE
23
MET
B
MSE
568
SELENOMETHIONINE
B
MSE
35
MET
B
MSE
579
SELENOMETHIONINE
B
MSE
46
MET
B
MSE
591
SELENOMETHIONINE
B
MSE
58
MET
C
MSE
556
SELENOMETHIONINE
C
MSE
23
MET
C
MSE
568
SELENOMETHIONINE
C
MSE
35
MET
C
MSE
579
SELENOMETHIONINE
C
MSE
46
MET
C
MSE
591
SELENOMETHIONINE
C
MSE
58
MET
D
MSE
556
SELENOMETHIONINE
D
MSE
23
MET
D
MSE
568
SELENOMETHIONINE
D
MSE
35
MET
D
MSE
579
SELENOMETHIONINE
D
MSE
46
MET
D
MSE
591
SELENOMETHIONINE
D
MSE
58
MET
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
CG
HIS
612
A
CG
HIS
79
1
Y
1
A
ND1
HIS
612
A
ND1
HIS
79
1
Y
1
A
CD2
HIS
612
A
CD2
HIS
79
1
Y
1
A
CE1
HIS
612
A
CE1
HIS
79
1
Y
1
A
NE2
HIS
612
A
NE2
HIS
79
1
Y
1
B
CG
GLU
538
B
CG
GLU
5
1
Y
1
B
CD
GLU
538
B
CD
GLU
5
1
Y
1
B
OE1
GLU
538
B
OE1
GLU
5
1
Y
1
B
OE2
GLU
538
B
OE2
GLU
5
1
Y
1
B
CG
GLN
613
B
CG
GLN
80
1
Y
1
B
CD
GLN
613
B
CD
GLN
80
1
Y
1
B
OE1
GLN
613
B
OE1
GLN
80
1
Y
1
B
NE2
GLN
613
B
NE2
GLN
80
1
Y
1
C
CG
GLU
538
C
CG
GLU
5
1
Y
1
C
CD
GLU
538
C
CD
GLU
5
1
Y
1
C
OE1
GLU
538
C
OE1
GLU
5
1
Y
1
C
OE2
GLU
538
C
OE2
GLU
5
1
Y
1
C
CG
ARG
544
C
CG
ARG
11
1
Y
1
C
CD
ARG
544
C
CD
ARG
11
1
Y
1
C
NE
ARG
544
C
NE
ARG
11
1
Y
1
C
CZ
ARG
544
C
CZ
ARG
11
1
Y
1
C
NH1
ARG
544
C
NH1
ARG
11
1
Y
1
C
NH2
ARG
544
C
NH2
ARG
11
1
Y
1
C
CG
GLN
613
C
CG
GLN
80
1
Y
1
C
CD
GLN
613
C
CD
GLN
80
1
Y
1
C
OE1
GLN
613
C
OE1
GLN
80
1
Y
1
C
NE2
GLN
613
C
NE2
GLN
80
1
Y
1
D
CG
GLU
538
D
CG
GLU
5
1
Y
1
D
CD
GLU
538
D
CD
GLU
5
1
Y
1
D
OE1
GLU
538
D
OE1
GLU
5
1
Y
1
D
OE2
GLU
538
D
OE2
GLU
5
1
Y
1
D
CG
GLN
613
D
CG
GLN
80
1
Y
1
D
CD
GLN
613
D
CD
GLN
80
1
Y
1
D
OE1
GLN
613
D
OE1
GLN
80
1
Y
1
D
NE2
GLN
613
D
NE2
GLN
80
1
Y
1
A
GLY
0
A
GLY
1
1
Y
1
A
GLN
535
A
GLN
2
1
Y
1
A
GLY
536
A
GLY
3
1
Y
1
A
GLN
613
A
GLN
80
1
Y
1
A
ALA
614
A
ALA
81
1
Y
1
A
LYS
615
A
LYS
82
1
Y
1
A
GLU
616
A
GLU
83
1
Y
1
A
ALA
617
A
ALA
84
1
Y
1
A
THR
618
A
THR
85
1
Y
1
A
GLN
619
A
GLN
86
1
Y
1
A
LYS
620
A
LYS
87
1
Y
1
A
ALA
621
A
ALA
88
1
Y
1
A
VAL
622
A
VAL
89
1
Y
1
A
ASN
623
A
ASN
90
1
Y
1
A
SER
624
A
SER
91
1
Y
1
A
ALA
625
A
ALA
92
1
Y
1
A
THR
626
A
THR
93
1
Y
1
A
GLY
627
A
GLY
94
1
Y
1
A
VAL
628
A
VAL
95
1
Y
1
A
PRO
629
A
PRO
96
1
Y
1
A
THR
630
A
THR
97
1
Y
1
A
VAL
631
A
VAL
98
1
Y
1
B
GLY
0
B
GLY
1
1
Y
1
B
GLN
535
B
GLN
2
1
Y
1
B
GLY
536
B
GLY
3
1
Y
1
B
GLN
537
B
GLN
4
1
Y
1
B
LYS
615
B
LYS
82
1
Y
1
B
GLU
616
B
GLU
83
1
Y
1
B
ALA
617
B
ALA
84
1
Y
1
B
THR
618
B
THR
85
1
Y
1
B
GLN
619
B
GLN
86
1
Y
1
B
LYS
620
B
LYS
87
1
Y
1
B
ALA
621
B
ALA
88
1
Y
1
B
VAL
622
B
VAL
89
1
Y
1
B
ASN
623
B
ASN
90
1
Y
1
B
SER
624
B
SER
91
1
Y
1
B
ALA
625
B
ALA
92
1
Y
1
B
THR
626
B
THR
93
1
Y
1
B
GLY
627
B
GLY
94
1
Y
1
B
VAL
628
B
VAL
95
1
Y
1
B
PRO
629
B
PRO
96
1
Y
1
B
THR
630
B
THR
97
1
Y
1
B
VAL
631
B
VAL
98
1
Y
1
C
GLY
0
C
GLY
1
1
Y
1
C
GLN
535
C
GLN
2
1
Y
1
C
GLY
536
C
GLY
3
1
Y
1
C
GLN
537
C
GLN
4
1
Y
1
C
ALA
614
C
ALA
81
1
Y
1
C
LYS
615
C
LYS
82
1
Y
1
C
GLU
616
C
GLU
83
1
Y
1
C
ALA
617
C
ALA
84
1
Y
1
C
THR
618
C
THR
85
1
Y
1
C
GLN
619
C
GLN
86
1
Y
1
C
LYS
620
C
LYS
87
1
Y
1
C
ALA
621
C
ALA
88
1
Y
1
C
VAL
622
C
VAL
89
1
Y
1
C
ASN
623
C
ASN
90
1
Y
1
C
SER
624
C
SER
91
1
Y
1
C
ALA
625
C
ALA
92
1
Y
1
C
THR
626
C
THR
93
1
Y
1
C
GLY
627
C
GLY
94
1
Y
1
C
VAL
628
C
VAL
95
1
Y
1
C
PRO
629
C
PRO
96
1
Y
1
C
THR
630
C
THR
97
1
Y
1
C
VAL
631
C
VAL
98
1
Y
1
D
GLY
0
D
GLY
1
1
Y
1
D
GLN
535
D
GLN
2
1
Y
1
D
GLY
536
D
GLY
3
1
Y
1
D
GLN
537
D
GLN
4
1
Y
1
D
ALA
614
D
ALA
81
1
Y
1
D
LYS
615
D
LYS
82
1
Y
1
D
GLU
616
D
GLU
83
1
Y
1
D
ALA
617
D
ALA
84
1
Y
1
D
THR
618
D
THR
85
1
Y
1
D
GLN
619
D
GLN
86
1
Y
1
D
LYS
620
D
LYS
87
1
Y
1
D
ALA
621
D
ALA
88
1
Y
1
D
VAL
622
D
VAL
89
1
Y
1
D
ASN
623
D
ASN
90
1
Y
1
D
SER
624
D
SER
91
1
Y
1
D
ALA
625
D
ALA
92
1
Y
1
D
THR
626
D
THR
93
1
Y
1
D
GLY
627
D
GLY
94
1
Y
1
D
VAL
628
D
VAL
95
1
Y
1
D
PRO
629
D
PRO
96
1
Y
1
D
THR
630
D
THR
97
1
Y
1
D
VAL
631
D
VAL
98
1
Y
1
B
THR
571
-60.18
-84.96
1
B
LEU
572
-98.79
42.72
165.610
56.6623
19.820
-5.0464
0.0000
0.0000
-5.0464
0.0000
10.0927
0.9279
0.9277
1. ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B FACTORS. ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U FACTORS. 2. CHLORIDE IONS MODELED ARE PRESENT IN CRYSTALLIZATION BUFFER. 3. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 4. THE MAD PHASES WERE USED AS RESTRAINTS DURING REFINEMENT. 5. NCS RESTRAINTS WERE APPLIED USING BUSTER'S LSSR RESTRAINT REPRESENTATION (-AUTONCS).
0.2121
0.2005
0.2011
2.3000
43.128
1016
20056
5.0700
99.5800
1.000
0.370
RANDOM
1
THROUGHOUT
0.000
MAD
0.357
2.3000
43.128
133
2445
2
0
2310
1208
SINUSOIDAL
2.000
63
HARMONIC
2.000
354
HARMONIC
5.000
2422
HARMONIC
20.000
334
SEMIHARMONIC
5.000
2964
SEMIHARMONIC
4.000
0.010
2422
HARMONIC
2.000
1.050
3292
HARMONIC
2.000
2.180
2.670
0.2442
0.1995
0.2015
2.4200
132
2747
2879
10
4.5800
99.5800
47.537
2.30
43.128
4IVE
20106
-3.000
0.097
1
12.030
99.500
0.756
2.300
2.380
2.4
12727
1919
1
97.800
0.575
2.380
2.480
3.4
16104
2117
1
100.000
0.421
2.480
2.590
4.5
14903
1960
1
100.000
0.304
2.590
2.730
6.1
15557
2043
1
100.000
0.213
2.730
2.900
8.3
15261
2001
1
100.000
0.143
2.900
3.120
11.9
14880
1962
1
100.000
0.107
3.120
3.430
15.5
14875
1996
1
100.000
0.090
3.430
3.930
19.0
12657
2004
1
98.000
0.063
3.930
4.930
23.6
13918
1987
1
99.800
0.053
4.930
43.128
25.0
15126
2103
1
99.700
model building
D.C. & J.S. Richardson lab
molprobity@kinemage.biochem.duke.edu
http://kinemage.biochem.duke.edu/molprobity/
MolProbity
package
3beta29
data extraction
PDB
deposit@deposit.rcsb.org
June 10, 2010
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.10
phasing
George M. Sheldrick
gsheldr@shelx.uni-ac.gwdg.de
Fortran_77
http://shelx.uni-ac.gwdg.de/SHELX/
SHELX
package
phasing
Eric de La Fortelle
sharp-develop@globalphasing.com
http://www.globalphasing.com/sharp/
SHARP
package
data scaling
Wolfgang Kabsch
http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html
XSCALE
package
March 15, 2012
refinement
Gerard Bricogne
buster-develop@GlobalPhasing.com
http://www.globalphasing.com/buster/
BUSTER-TNT
program
2.10.0
data reduction
XDS
phasing
SHELXD
refinement
BUSTER
2.10.0
Crystal structure of a polyadenylate-binding protein 3 (PABPC3) from Homo sapiens at 2.30 A resolution
1
N
N
1
N
N
1
N
N
1
N
N
2
N
N
2
N
N
3
N
N
3
N
N
3
N
N
3
N
N
A
THR
541
A
THR
8
HELX_P
A
SER
547
A
SER
14
1
1
7
A
PRO
549
A
PRO
16
HELX_P
A
HIS
569
A
HIS
36
1
2
21
A
LEU
572
A
LEU
39
HELX_P
A
LEU
581
A
LEU
48
1
3
10
A
ASP
584
A
ASP
51
HELX_P
A
GLU
593
A
GLU
60
1
4
10
A
SER
594
A
SER
61
HELX_P
A
GLN
610
A
GLN
77
1
5
17
B
THR
541
B
THR
8
HELX_P
B
ALA
548
B
ALA
15
1
6
8
B
PRO
549
B
PRO
16
HELX_P
B
GLN
551
B
GLN
18
5
7
3
B
LYS
552
B
LYS
19
HELX_P
B
HIS
569
B
HIS
36
1
8
18
B
LEU
572
B
LEU
39
HELX_P
B
LEU
581
B
LEU
48
1
9
10
B
ASP
584
B
ASP
51
HELX_P
B
SER
594
B
SER
61
1
10
11
B
SER
594
B
SER
61
HELX_P
B
GLN
610
B
GLN
77
1
11
17
C
THR
541
C
THR
8
HELX_P
C
SER
547
C
SER
14
1
12
7
C
PRO
549
C
PRO
16
HELX_P
C
HIS
569
C
HIS
36
1
13
21
C
LEU
572
C
LEU
39
HELX_P
C
LEU
581
C
LEU
48
1
14
10
C
ASP
584
C
ASP
51
HELX_P
C
LEU
592
C
LEU
59
1
15
9
C
SER
594
C
SER
61
HELX_P
C
GLN
610
C
GLN
77
1
16
17
D
THR
541
D
THR
8
HELX_P
D
ALA
548
D
ALA
15
1
17
8
D
PRO
549
D
PRO
16
HELX_P
D
GLN
551
D
GLN
18
5
18
3
D
LYS
552
D
LYS
19
HELX_P
D
ALA
567
D
ALA
34
1
19
16
D
LEU
572
D
LEU
39
HELX_P
D
LEU
581
D
LEU
48
1
20
10
D
ASP
584
D
ASP
51
HELX_P
D
SER
594
D
SER
61
1
21
11
D
SER
594
D
SER
61
HELX_P
D
GLN
610
D
GLN
77
1
22
17
covale
1.351
both
A
GLN
555
A
C
GLN
22
1_555
A
MSE
556
A
N
MSE
23
1_555
covale
1.330
both
A
MSE
556
A
C
MSE
23
1_555
A
LEU
557
A
N
LEU
24
1_555
covale
1.364
both
A
ALA
567
A
C
ALA
34
1_555
A
MSE
568
A
N
MSE
35
1_555
covale
1.337
both
A
MSE
568
A
C
MSE
35
1_555
A
HIS
569
A
N
HIS
36
1_555
covale
1.353
both
A
GLY
578
A
C
GLY
45
1_555
A
MSE
579
A
N
MSE
46
1_555
covale
1.346
both
A
MSE
579
A
C
MSE
46
1_555
A
LEU
580
A
N
LEU
47
1_555
covale
1.350
both
A
TYR
590
A
C
TYR
57
1_555
A
MSE
591
A
N
MSE
58
1_555
covale
1.354
both
A
MSE
591
A
C
MSE
58
1_555
A
LEU
592
A
N
LEU
59
1_555
covale
1.348
both
B
GLN
555
B
C
GLN
22
1_555
B
MSE
556
B
N
MSE
23
1_555
covale
1.338
both
B
MSE
556
B
C
MSE
23
1_555
B
LEU
557
B
N
LEU
24
1_555
covale
1.351
both
B
ALA
567
B
C
ALA
34
1_555
B
MSE
568
B
N
MSE
35
1_555
covale
1.353
both
B
MSE
568
B
C
MSE
35
1_555
B
HIS
569
B
N
HIS
36
1_555
covale
1.355
both
B
GLY
578
B
C
GLY
45
1_555
B
MSE
579
B
N
MSE
46
1_555
covale
1.355
both
B
MSE
579
B
C
MSE
46
1_555
B
LEU
580
B
N
LEU
47
1_555
covale
1.345
both
B
TYR
590
B
C
TYR
57
1_555
B
MSE
591
B
N
MSE
58
1_555
covale
1.347
both
B
MSE
591
B
C
MSE
58
1_555
B
LEU
592
B
N
LEU
59
1_555
covale
1.351
both
C
GLN
555
C
C
GLN
22
1_555
C
MSE
556
C
N
MSE
23
1_555
covale
1.329
both
C
MSE
556
C
C
MSE
23
1_555
C
LEU
557
C
N
LEU
24
1_555
covale
1.341
both
C
ALA
567
C
C
ALA
34
1_555
C
MSE
568
C
N
MSE
35
1_555
covale
1.347
both
C
MSE
568
C
C
MSE
35
1_555
C
HIS
569
C
N
HIS
36
1_555
covale
1.337
both
C
GLY
578
C
C
GLY
45
1_555
C
MSE
579
C
N
MSE
46
1_555
covale
1.362
both
C
MSE
579
C
C
MSE
46
1_555
C
LEU
580
C
N
LEU
47
1_555
covale
1.351
both
C
TYR
590
C
C
TYR
57
1_555
C
MSE
591
C
N
MSE
58
1_555
covale
1.343
both
C
MSE
591
C
C
MSE
58
1_555
C
LEU
592
C
N
LEU
59
1_555
covale
1.348
both
D
GLN
555
D
C
GLN
22
1_555
D
MSE
556
D
N
MSE
23
1_555
covale
1.339
both
D
MSE
556
D
C
MSE
23
1_555
D
LEU
557
D
N
LEU
24
1_555
covale
1.333
both
D
ALA
567
D
C
ALA
34
1_555
D
MSE
568
D
N
MSE
35
1_555
covale
1.351
both
D
MSE
568
D
C
MSE
35
1_555
D
HIS
569
D
N
HIS
36
1_555
covale
1.335
both
D
GLY
578
D
C
GLY
45
1_555
D
MSE
579
D
N
MSE
46
1_555
covale
1.358
both
D
MSE
579
D
C
MSE
46
1_555
D
LEU
580
D
N
LEU
47
1_555
covale
1.352
both
D
TYR
590
D
C
TYR
57
1_555
D
MSE
591
D
N
MSE
58
1_555
covale
1.352
both
D
MSE
591
D
C
MSE
58
1_555
D
LEU
592
D
N
LEU
59
1_555
RNA BINDING PROTEIN
PABP unique domain, PF00658 family, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-BIOLOGY, RNA-BINDING PROTEIN, RNA BINDING PROTEIN, Partnership for T-Cell Biology, TCELL
PABP3_HUMAN
UNP
1
535
Q9H361
QGQETLTASRLASAPPQKQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLYMLESPESLRSKVDEAVAVLQAHQA
KEATQKAVNSATGVPTV
535
631
4IVE
535
631
Q9H361
A
1
2
98
535
631
4IVE
535
631
Q9H361
B
1
2
98
535
631
4IVE
535
631
Q9H361
C
1
2
98
535
631
4IVE
535
631
Q9H361
D
1
2
98
1
expression tag
GLY
0
4IVE
A
Q9H361
UNP
1
2
expression tag
GLY
0
4IVE
B
Q9H361
UNP
1
3
expression tag
GLY
0
4IVE
C
Q9H361
UNP
1
4
expression tag
GLY
0
4IVE
D
Q9H361
UNP
1
BINDING SITE FOR RESIDUE CL A 701
A
CL
701
Software
2
BINDING SITE FOR RESIDUE CL C 701
C
CL
701
Software
3
A
HIS
569
A
HIS
36
2
1_555
A
THR
571
A
THR
38
2
1_555
C
HIS
569
C
HIS
36
3
1_555
C
PRO
570
C
PRO
37
3
1_555
C
THR
571
C
THR
38
3
1_555
78
P 43