0.014838 0.000000 0.000000 0.000000 0.014838 0.000000 0.000000 0.000000 0.009864 0.00000 0.00000 0.00000 Joint Center for Structural Genomics (JCSG) Partnership for T-Cell Biology (TCELL) http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 16 90.000 90.000 90.000 67.395 67.395 101.380 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking Cl -1 35.453 CHLORIDE ION non-polymer C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 Se 196.106 n SELENOMETHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking To be published 0353 Crystal structure of a polyadenylate-binding protein 3 (PABPC3) from Homo sapiens at 2.30 A resolution 10.2210/pdb4ive/pdb pdb_00004ive 100 1 KOHZU: Double Crystal Si(111) CCD 2012-10-17 ADSC QUANTUM 315 Double Crystal Si(111) MAD M x-ray 1 0.979493 1.0 0.918401 1.0 0.979284 1.0 8.2.2 ALS 0.979493,0.918401,0.979284 SYNCHROTRON ALS BEAMLINE 8.2.2 10708.643 Polyadenylate-binding protein 3 PABC domain residues 535-631 4 man polymer 35.453 CHLORIDE ION 2 syn non-polymer 18.015 water 133 nat water PABP-3, Poly(A)-binding protein 3, Testis-specific poly(A)-binding protein no yes GQGQETLTASRLASAPPQKQKQ(MSE)LGERLFPLIQA(MSE)HPTLAGKITG(MSE)LLEIDNSELLY(MSE)LESPES LRSKVDEAVAVLQAHQAKEATQKAVNSATGVPTV GQGQETLTASRLASAPPQKQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLYMLESPESLRSKVDEAVAVLQAHQ AKEATQKAVNSATGVPTV A,B,C,D JCSG-424003 polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human sample BC027617, PABP3, PABPC3, PABPL3 9606 Homo sapiens 562 Escherichia Coli PB1 Plasmid SpeedET 1 2.69 54.23 VAPOR DIFFUSION, SITTING DROP 5.62 26.00% polyethylene glycol 6000, 0.1M MES pH 5.62, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K 277 Joint Center for Structural Genomics JCSG PSI:Biology Partnership for T-Cell Biology TCELL PSI:Biology software database_2 struct_conn struct_ref_seq_dif struct_site repository Initial release Refinement description Database references Derived calculations 1 0 2013-02-06 1 1 2017-11-15 1 2 2023-02-01 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_conn.pdbx_leaving_atom_flag _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id Y RCSB Y RCSB 2013-01-22 REL REL CL CHLORIDE ION HOH water THE CONSTRUCT (535-631) WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. CL 636 2 CL CL 701 A CL 635 2 CL CL 701 C HOH 645 3 HOH HOH 801 A HOH 647 3 HOH HOH 802 A HOH 648 3 HOH HOH 803 A HOH 651 3 HOH HOH 804 A HOH 654 3 HOH HOH 805 A HOH 659 3 HOH HOH 806 A HOH 660 3 HOH HOH 807 A HOH 661 3 HOH HOH 808 A HOH 666 3 HOH HOH 809 A HOH 668 3 HOH HOH 810 A HOH 674 3 HOH HOH 811 A HOH 675 3 HOH HOH 812 A HOH 677 3 HOH HOH 813 A HOH 705 3 HOH HOH 814 A HOH 706 3 HOH HOH 815 A HOH 718 3 HOH HOH 816 A HOH 725 3 HOH HOH 817 A HOH 726 3 HOH HOH 818 A HOH 727 3 HOH HOH 819 A HOH 728 3 HOH HOH 820 A HOH 730 3 HOH HOH 821 A HOH 732 3 HOH HOH 822 A HOH 746 3 HOH HOH 823 A HOH 750 3 HOH HOH 824 A HOH 751 3 HOH HOH 825 A HOH 753 3 HOH HOH 826 A HOH 755 3 HOH HOH 827 A HOH 759 3 HOH HOH 828 A HOH 760 3 HOH HOH 829 A HOH 764 3 HOH HOH 830 A HOH 765 3 HOH HOH 831 A HOH 766 3 HOH HOH 832 A HOH 637 3 HOH HOH 701 B HOH 639 3 HOH HOH 702 B HOH 642 3 HOH HOH 703 B HOH 643 3 HOH HOH 704 B HOH 658 3 HOH HOH 705 B HOH 664 3 HOH HOH 706 B HOH 665 3 HOH HOH 707 B HOH 667 3 HOH HOH 708 B HOH 670 3 HOH HOH 709 B HOH 673 3 HOH HOH 710 B HOH 682 3 HOH HOH 711 B HOH 691 3 HOH HOH 712 B HOH 693 3 HOH HOH 713 B HOH 694 3 HOH HOH 714 B HOH 698 3 HOH HOH 715 B HOH 700 3 HOH HOH 716 B HOH 702 3 HOH HOH 717 B HOH 711 3 HOH HOH 718 B HOH 716 3 HOH HOH 719 B HOH 734 3 HOH HOH 720 B HOH 735 3 HOH HOH 721 B HOH 739 3 HOH HOH 722 B HOH 741 3 HOH HOH 723 B HOH 744 3 HOH HOH 724 B HOH 745 3 HOH HOH 725 B HOH 747 3 HOH HOH 726 B HOH 748 3 HOH HOH 727 B HOH 749 3 HOH HOH 728 B HOH 757 3 HOH HOH 729 B HOH 763 3 HOH HOH 730 B HOH 640 3 HOH HOH 801 C HOH 641 3 HOH HOH 802 C HOH 644 3 HOH HOH 803 C HOH 646 3 HOH HOH 804 C HOH 655 3 HOH HOH 805 C HOH 656 3 HOH HOH 806 C HOH 671 3 HOH HOH 807 C HOH 672 3 HOH HOH 808 C HOH 678 3 HOH HOH 809 C HOH 680 3 HOH HOH 810 C HOH 681 3 HOH HOH 811 C HOH 685 3 HOH HOH 812 C HOH 687 3 HOH HOH 813 C HOH 689 3 HOH HOH 814 C HOH 690 3 HOH HOH 815 C HOH 695 3 HOH HOH 816 C HOH 699 3 HOH HOH 817 C HOH 703 3 HOH HOH 818 C HOH 709 3 HOH HOH 819 C HOH 713 3 HOH HOH 820 C HOH 714 3 HOH HOH 821 C HOH 717 3 HOH HOH 822 C HOH 719 3 HOH HOH 823 C HOH 720 3 HOH HOH 824 C HOH 722 3 HOH HOH 825 C HOH 724 3 HOH HOH 826 C HOH 733 3 HOH HOH 827 C HOH 736 3 HOH HOH 828 C HOH 740 3 HOH HOH 829 C HOH 742 3 HOH HOH 830 C HOH 743 3 HOH HOH 831 C HOH 752 3 HOH HOH 832 C HOH 756 3 HOH HOH 833 C HOH 758 3 HOH HOH 834 C HOH 761 3 HOH HOH 835 C HOH 762 3 HOH HOH 836 C HOH 769 3 HOH HOH 837 C HOH 638 3 HOH HOH 701 D HOH 649 3 HOH HOH 702 D HOH 650 3 HOH HOH 703 D HOH 652 3 HOH HOH 704 D HOH 653 3 HOH HOH 705 D HOH 657 3 HOH HOH 706 D HOH 662 3 HOH HOH 707 D HOH 663 3 HOH HOH 708 D HOH 669 3 HOH HOH 709 D HOH 676 3 HOH HOH 710 D HOH 679 3 HOH HOH 711 D HOH 683 3 HOH HOH 712 D HOH 684 3 HOH HOH 713 D HOH 686 3 HOH HOH 714 D HOH 688 3 HOH HOH 715 D HOH 692 3 HOH HOH 716 D HOH 696 3 HOH HOH 717 D HOH 697 3 HOH HOH 718 D HOH 701 3 HOH HOH 719 D HOH 704 3 HOH HOH 720 D HOH 707 3 HOH HOH 721 D HOH 708 3 HOH HOH 722 D HOH 710 3 HOH HOH 723 D HOH 712 3 HOH HOH 724 D HOH 715 3 HOH HOH 725 D HOH 721 3 HOH HOH 726 D HOH 723 3 HOH HOH 727 D HOH 729 3 HOH HOH 728 D HOH 731 3 HOH HOH 729 D HOH 737 3 HOH HOH 730 D HOH 738 3 HOH HOH 731 D HOH 754 3 HOH HOH 732 D HOH 767 3 HOH HOH 733 D HOH 768 3 HOH HOH 734 D n 1 0 A n 2 535 A n 3 536 A GLN 537 n 4 GLN 537 A GLU 538 n 5 GLU 538 A THR 539 n 6 THR 539 A LEU 540 n 7 LEU 540 A THR 541 n 8 THR 541 A ALA 542 n 9 ALA 542 A SER 543 n 10 SER 543 A ARG 544 n 11 ARG 544 A LEU 545 n 12 LEU 545 A ALA 546 n 13 ALA 546 A SER 547 n 14 SER 547 A ALA 548 n 15 ALA 548 A PRO 549 n 16 PRO 549 A PRO 550 n 17 PRO 550 A GLN 551 n 18 GLN 551 A LYS 552 n 19 LYS 552 A GLN 553 n 20 GLN 553 A LYS 554 n 21 LYS 554 A GLN 555 n 22 GLN 555 A MSE 556 n 23 MSE 556 A LEU 557 n 24 LEU 557 A GLY 558 n 25 GLY 558 A GLU 559 n 26 GLU 559 A ARG 560 n 27 ARG 560 A LEU 561 n 28 LEU 561 A PHE 562 n 29 PHE 562 A PRO 563 n 30 PRO 563 A LEU 564 n 31 LEU 564 A ILE 565 n 32 ILE 565 A GLN 566 n 33 GLN 566 A ALA 567 n 34 ALA 567 A MSE 568 n 35 MSE 568 A HIS 569 n 36 HIS 569 A PRO 570 n 37 PRO 570 A THR 571 n 38 THR 571 A LEU 572 n 39 LEU 572 A ALA 573 n 40 ALA 573 A GLY 574 n 41 GLY 574 A LYS 575 n 42 LYS 575 A ILE 576 n 43 ILE 576 A THR 577 n 44 THR 577 A GLY 578 n 45 GLY 578 A MSE 579 n 46 MSE 579 A LEU 580 n 47 LEU 580 A LEU 581 n 48 LEU 581 A GLU 582 n 49 GLU 582 A ILE 583 n 50 ILE 583 A ASP 584 n 51 ASP 584 A ASN 585 n 52 ASN 585 A SER 586 n 53 SER 586 A GLU 587 n 54 GLU 587 A LEU 588 n 55 LEU 588 A LEU 589 n 56 LEU 589 A TYR 590 n 57 TYR 590 A MSE 591 n 58 MSE 591 A LEU 592 n 59 LEU 592 A GLU 593 n 60 GLU 593 A SER 594 n 61 SER 594 A PRO 595 n 62 PRO 595 A GLU 596 n 63 GLU 596 A SER 597 n 64 SER 597 A LEU 598 n 65 LEU 598 A ARG 599 n 66 ARG 599 A SER 600 n 67 SER 600 A LYS 601 n 68 LYS 601 A VAL 602 n 69 VAL 602 A ASP 603 n 70 ASP 603 A GLU 604 n 71 GLU 604 A ALA 605 n 72 ALA 605 A VAL 606 n 73 VAL 606 A ALA 607 n 74 ALA 607 A VAL 608 n 75 VAL 608 A LEU 609 n 76 LEU 609 A GLN 610 n 77 GLN 610 A ALA 611 n 78 ALA 611 A HIS 612 n 79 HIS 612 A n 80 613 A n 81 614 A n 82 615 A n 83 616 A n 84 617 A n 85 618 A n 86 619 A n 87 620 A n 88 621 A n 89 622 A n 90 623 A n 91 624 A n 92 625 A n 93 626 A n 94 627 A n 95 628 A n 96 629 A n 97 630 A n 98 631 A n 1 0 B n 2 535 B n 3 536 B n 4 537 B GLU 538 n 5 GLU 538 B THR 539 n 6 THR 539 B LEU 540 n 7 LEU 540 B THR 541 n 8 THR 541 B ALA 542 n 9 ALA 542 B SER 543 n 10 SER 543 B ARG 544 n 11 ARG 544 B LEU 545 n 12 LEU 545 B ALA 546 n 13 ALA 546 B SER 547 n 14 SER 547 B ALA 548 n 15 ALA 548 B PRO 549 n 16 PRO 549 B PRO 550 n 17 PRO 550 B GLN 551 n 18 GLN 551 B LYS 552 n 19 LYS 552 B GLN 553 n 20 GLN 553 B LYS 554 n 21 LYS 554 B GLN 555 n 22 GLN 555 B MSE 556 n 23 MSE 556 B LEU 557 n 24 LEU 557 B GLY 558 n 25 GLY 558 B GLU 559 n 26 GLU 559 B ARG 560 n 27 ARG 560 B LEU 561 n 28 LEU 561 B PHE 562 n 29 PHE 562 B PRO 563 n 30 PRO 563 B LEU 564 n 31 LEU 564 B ILE 565 n 32 ILE 565 B GLN 566 n 33 GLN 566 B ALA 567 n 34 ALA 567 B MSE 568 n 35 MSE 568 B HIS 569 n 36 HIS 569 B PRO 570 n 37 PRO 570 B THR 571 n 38 THR 571 B LEU 572 n 39 LEU 572 B ALA 573 n 40 ALA 573 B GLY 574 n 41 GLY 574 B LYS 575 n 42 LYS 575 B ILE 576 n 43 ILE 576 B THR 577 n 44 THR 577 B GLY 578 n 45 GLY 578 B MSE 579 n 46 MSE 579 B LEU 580 n 47 LEU 580 B LEU 581 n 48 LEU 581 B GLU 582 n 49 GLU 582 B ILE 583 n 50 ILE 583 B ASP 584 n 51 ASP 584 B ASN 585 n 52 ASN 585 B SER 586 n 53 SER 586 B GLU 587 n 54 GLU 587 B LEU 588 n 55 LEU 588 B LEU 589 n 56 LEU 589 B TYR 590 n 57 TYR 590 B MSE 591 n 58 MSE 591 B LEU 592 n 59 LEU 592 B GLU 593 n 60 GLU 593 B SER 594 n 61 SER 594 B PRO 595 n 62 PRO 595 B GLU 596 n 63 GLU 596 B SER 597 n 64 SER 597 B LEU 598 n 65 LEU 598 B ARG 599 n 66 ARG 599 B SER 600 n 67 SER 600 B LYS 601 n 68 LYS 601 B VAL 602 n 69 VAL 602 B ASP 603 n 70 ASP 603 B GLU 604 n 71 GLU 604 B ALA 605 n 72 ALA 605 B VAL 606 n 73 VAL 606 B ALA 607 n 74 ALA 607 B VAL 608 n 75 VAL 608 B LEU 609 n 76 LEU 609 B GLN 610 n 77 GLN 610 B ALA 611 n 78 ALA 611 B HIS 612 n 79 HIS 612 B GLN 613 n 80 GLN 613 B ALA 614 n 81 ALA 614 B n 82 615 B n 83 616 B n 84 617 B n 85 618 B n 86 619 B n 87 620 B n 88 621 B n 89 622 B n 90 623 B n 91 624 B n 92 625 B n 93 626 B n 94 627 B n 95 628 B n 96 629 B n 97 630 B n 98 631 B n 1 0 C n 2 535 C n 3 536 C n 4 537 C GLU 538 n 5 GLU 538 C THR 539 n 6 THR 539 C LEU 540 n 7 LEU 540 C THR 541 n 8 THR 541 C ALA 542 n 9 ALA 542 C SER 543 n 10 SER 543 C ARG 544 n 11 ARG 544 C LEU 545 n 12 LEU 545 C ALA 546 n 13 ALA 546 C SER 547 n 14 SER 547 C ALA 548 n 15 ALA 548 C PRO 549 n 16 PRO 549 C PRO 550 n 17 PRO 550 C GLN 551 n 18 GLN 551 C LYS 552 n 19 LYS 552 C GLN 553 n 20 GLN 553 C LYS 554 n 21 LYS 554 C GLN 555 n 22 GLN 555 C MSE 556 n 23 MSE 556 C LEU 557 n 24 LEU 557 C GLY 558 n 25 GLY 558 C GLU 559 n 26 GLU 559 C ARG 560 n 27 ARG 560 C LEU 561 n 28 LEU 561 C PHE 562 n 29 PHE 562 C PRO 563 n 30 PRO 563 C LEU 564 n 31 LEU 564 C ILE 565 n 32 ILE 565 C GLN 566 n 33 GLN 566 C ALA 567 n 34 ALA 567 C MSE 568 n 35 MSE 568 C HIS 569 n 36 HIS 569 C PRO 570 n 37 PRO 570 C THR 571 n 38 THR 571 C LEU 572 n 39 LEU 572 C ALA 573 n 40 ALA 573 C GLY 574 n 41 GLY 574 C LYS 575 n 42 LYS 575 C ILE 576 n 43 ILE 576 C THR 577 n 44 THR 577 C GLY 578 n 45 GLY 578 C MSE 579 n 46 MSE 579 C LEU 580 n 47 LEU 580 C LEU 581 n 48 LEU 581 C GLU 582 n 49 GLU 582 C ILE 583 n 50 ILE 583 C ASP 584 n 51 ASP 584 C ASN 585 n 52 ASN 585 C SER 586 n 53 SER 586 C GLU 587 n 54 GLU 587 C LEU 588 n 55 LEU 588 C LEU 589 n 56 LEU 589 C TYR 590 n 57 TYR 590 C MSE 591 n 58 MSE 591 C LEU 592 n 59 LEU 592 C GLU 593 n 60 GLU 593 C SER 594 n 61 SER 594 C PRO 595 n 62 PRO 595 C GLU 596 n 63 GLU 596 C SER 597 n 64 SER 597 C LEU 598 n 65 LEU 598 C ARG 599 n 66 ARG 599 C SER 600 n 67 SER 600 C LYS 601 n 68 LYS 601 C VAL 602 n 69 VAL 602 C ASP 603 n 70 ASP 603 C GLU 604 n 71 GLU 604 C ALA 605 n 72 ALA 605 C VAL 606 n 73 VAL 606 C ALA 607 n 74 ALA 607 C VAL 608 n 75 VAL 608 C LEU 609 n 76 LEU 609 C GLN 610 n 77 GLN 610 C ALA 611 n 78 ALA 611 C HIS 612 n 79 HIS 612 C GLN 613 n 80 GLN 613 C n 81 614 C n 82 615 C n 83 616 C n 84 617 C n 85 618 C n 86 619 C n 87 620 C n 88 621 C n 89 622 C n 90 623 C n 91 624 C n 92 625 C n 93 626 C n 94 627 C n 95 628 C n 96 629 C n 97 630 C n 98 631 C n 1 0 D n 2 535 D n 3 536 D n 4 537 D GLU 538 n 5 GLU 538 D THR 539 n 6 THR 539 D LEU 540 n 7 LEU 540 D THR 541 n 8 THR 541 D ALA 542 n 9 ALA 542 D SER 543 n 10 SER 543 D ARG 544 n 11 ARG 544 D LEU 545 n 12 LEU 545 D ALA 546 n 13 ALA 546 D SER 547 n 14 SER 547 D ALA 548 n 15 ALA 548 D PRO 549 n 16 PRO 549 D PRO 550 n 17 PRO 550 D GLN 551 n 18 GLN 551 D LYS 552 n 19 LYS 552 D GLN 553 n 20 GLN 553 D LYS 554 n 21 LYS 554 D GLN 555 n 22 GLN 555 D MSE 556 n 23 MSE 556 D LEU 557 n 24 LEU 557 D GLY 558 n 25 GLY 558 D GLU 559 n 26 GLU 559 D ARG 560 n 27 ARG 560 D LEU 561 n 28 LEU 561 D PHE 562 n 29 PHE 562 D PRO 563 n 30 PRO 563 D LEU 564 n 31 LEU 564 D ILE 565 n 32 ILE 565 D GLN 566 n 33 GLN 566 D ALA 567 n 34 ALA 567 D MSE 568 n 35 MSE 568 D HIS 569 n 36 HIS 569 D PRO 570 n 37 PRO 570 D THR 571 n 38 THR 571 D LEU 572 n 39 LEU 572 D ALA 573 n 40 ALA 573 D GLY 574 n 41 GLY 574 D LYS 575 n 42 LYS 575 D ILE 576 n 43 ILE 576 D THR 577 n 44 THR 577 D GLY 578 n 45 GLY 578 D MSE 579 n 46 MSE 579 D LEU 580 n 47 LEU 580 D LEU 581 n 48 LEU 581 D GLU 582 n 49 GLU 582 D ILE 583 n 50 ILE 583 D ASP 584 n 51 ASP 584 D ASN 585 n 52 ASN 585 D SER 586 n 53 SER 586 D GLU 587 n 54 GLU 587 D LEU 588 n 55 LEU 588 D LEU 589 n 56 LEU 589 D TYR 590 n 57 TYR 590 D MSE 591 n 58 MSE 591 D LEU 592 n 59 LEU 592 D GLU 593 n 60 GLU 593 D SER 594 n 61 SER 594 D PRO 595 n 62 PRO 595 D GLU 596 n 63 GLU 596 D SER 597 n 64 SER 597 D LEU 598 n 65 LEU 598 D ARG 599 n 66 ARG 599 D SER 600 n 67 SER 600 D LYS 601 n 68 LYS 601 D VAL 602 n 69 VAL 602 D ASP 603 n 70 ASP 603 D GLU 604 n 71 GLU 604 D ALA 605 n 72 ALA 605 D VAL 606 n 73 VAL 606 D ALA 607 n 74 ALA 607 D VAL 608 n 75 VAL 608 D LEU 609 n 76 LEU 609 D GLN 610 n 77 GLN 610 D ALA 611 n 78 ALA 611 D HIS 612 n 79 HIS 612 D GLN 613 n 80 GLN 613 D n 81 614 D n 82 615 D n 83 616 D n 84 617 D n 85 618 D n 86 619 D n 87 620 D n 88 621 D n 89 622 D n 90 623 D n 91 624 D n 92 625 D n 93 626 D n 94 627 D n 95 628 D n 96 629 D n 97 630 D n 98 631 D 5.2051 -0.5073 -2.9104 2.7463 1.7077 8.3043 -0.1195 0.4790 -0.0245 0.0176 0.0914 0.2472 -0.0230 -0.4441 0.0281 -0.1722 0.0411 0.0436 -0.0079 0.0104 -0.1571 refined 32.5961 5.2067 34.9959 X-RAY DIFFRACTION 4.5334 -0.1746 -1.3191 2.0930 1.3940 8.3155 0.1601 0.5442 0.2683 -0.2480 -0.3809 0.2485 -0.4700 -0.5442 0.2208 -0.2594 0.1520 -0.0471 0.1354 -0.0262 -0.1581 refined 14.0336 10.1033 40.7462 X-RAY DIFFRACTION 4.8886 -2.6500 -0.6239 7.5299 -0.0312 4.2650 -0.0234 -0.0686 -0.5442 0.5297 -0.1305 0.4828 -0.1313 -0.2367 0.1540 -0.1353 0.0207 0.0392 -0.1298 -0.0395 -0.1187 refined 12.4094 14.5409 67.0452 X-RAY DIFFRACTION 1.7851 -0.8429 0.1631 2.7042 -1.7318 8.3155 -0.0432 -0.0238 -0.0661 -0.0481 -0.3216 -0.2696 0.2565 0.5148 0.3648 -0.1614 0.0313 0.0315 -0.0136 0.0475 -0.0624 refined 27.6101 2.7740 61.1619 X-RAY DIFFRACTION A 537 A 612 X-RAY DIFFRACTION 1 {A|537 - 612} B 538 B 614 X-RAY DIFFRACTION 2 {B|538 - 614} C 538 C 613 X-RAY DIFFRACTION 3 {C|538 - 613} D 538 D 613 X-RAY DIFFRACTION 4 {D|538 - 613} author_and_software_defined_assembly PISA 4 tetrameric software_defined_assembly PISA 2 dimeric software_defined_assembly PISA 2 dimeric author_defined_assembly 1 monomeric author_defined_assembly 1 monomeric author_defined_assembly 1 monomeric author_defined_assembly 1 monomeric 5510 -40 14880 1710 -15 8490 1710 -15 8470 A MSE 556 SELENOMETHIONINE A MSE 23 MET A MSE 568 SELENOMETHIONINE A MSE 35 MET A MSE 579 SELENOMETHIONINE A MSE 46 MET A MSE 591 SELENOMETHIONINE A MSE 58 MET B MSE 556 SELENOMETHIONINE B MSE 23 MET B MSE 568 SELENOMETHIONINE B MSE 35 MET B MSE 579 SELENOMETHIONINE B MSE 46 MET B MSE 591 SELENOMETHIONINE B MSE 58 MET C MSE 556 SELENOMETHIONINE C MSE 23 MET C MSE 568 SELENOMETHIONINE C MSE 35 MET C MSE 579 SELENOMETHIONINE C MSE 46 MET C MSE 591 SELENOMETHIONINE C MSE 58 MET D MSE 556 SELENOMETHIONINE D MSE 23 MET D MSE 568 SELENOMETHIONINE D MSE 35 MET D MSE 579 SELENOMETHIONINE D MSE 46 MET D MSE 591 SELENOMETHIONINE D MSE 58 MET 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A CG HIS 612 A CG HIS 79 1 Y 1 A ND1 HIS 612 A ND1 HIS 79 1 Y 1 A CD2 HIS 612 A CD2 HIS 79 1 Y 1 A CE1 HIS 612 A CE1 HIS 79 1 Y 1 A NE2 HIS 612 A NE2 HIS 79 1 Y 1 B CG GLU 538 B CG GLU 5 1 Y 1 B CD GLU 538 B CD GLU 5 1 Y 1 B OE1 GLU 538 B OE1 GLU 5 1 Y 1 B OE2 GLU 538 B OE2 GLU 5 1 Y 1 B CG GLN 613 B CG GLN 80 1 Y 1 B CD GLN 613 B CD GLN 80 1 Y 1 B OE1 GLN 613 B OE1 GLN 80 1 Y 1 B NE2 GLN 613 B NE2 GLN 80 1 Y 1 C CG GLU 538 C CG GLU 5 1 Y 1 C CD GLU 538 C CD GLU 5 1 Y 1 C OE1 GLU 538 C OE1 GLU 5 1 Y 1 C OE2 GLU 538 C OE2 GLU 5 1 Y 1 C CG ARG 544 C CG ARG 11 1 Y 1 C CD ARG 544 C CD ARG 11 1 Y 1 C NE ARG 544 C NE ARG 11 1 Y 1 C CZ ARG 544 C CZ ARG 11 1 Y 1 C NH1 ARG 544 C NH1 ARG 11 1 Y 1 C NH2 ARG 544 C NH2 ARG 11 1 Y 1 C CG GLN 613 C CG GLN 80 1 Y 1 C CD GLN 613 C CD GLN 80 1 Y 1 C OE1 GLN 613 C OE1 GLN 80 1 Y 1 C NE2 GLN 613 C NE2 GLN 80 1 Y 1 D CG GLU 538 D CG GLU 5 1 Y 1 D CD GLU 538 D CD GLU 5 1 Y 1 D OE1 GLU 538 D OE1 GLU 5 1 Y 1 D OE2 GLU 538 D OE2 GLU 5 1 Y 1 D CG GLN 613 D CG GLN 80 1 Y 1 D CD GLN 613 D CD GLN 80 1 Y 1 D OE1 GLN 613 D OE1 GLN 80 1 Y 1 D NE2 GLN 613 D NE2 GLN 80 1 Y 1 A GLY 0 A GLY 1 1 Y 1 A GLN 535 A GLN 2 1 Y 1 A GLY 536 A GLY 3 1 Y 1 A GLN 613 A GLN 80 1 Y 1 A ALA 614 A ALA 81 1 Y 1 A LYS 615 A LYS 82 1 Y 1 A GLU 616 A GLU 83 1 Y 1 A ALA 617 A ALA 84 1 Y 1 A THR 618 A THR 85 1 Y 1 A GLN 619 A GLN 86 1 Y 1 A LYS 620 A LYS 87 1 Y 1 A ALA 621 A ALA 88 1 Y 1 A VAL 622 A VAL 89 1 Y 1 A ASN 623 A ASN 90 1 Y 1 A SER 624 A SER 91 1 Y 1 A ALA 625 A ALA 92 1 Y 1 A THR 626 A THR 93 1 Y 1 A GLY 627 A GLY 94 1 Y 1 A VAL 628 A VAL 95 1 Y 1 A PRO 629 A PRO 96 1 Y 1 A THR 630 A THR 97 1 Y 1 A VAL 631 A VAL 98 1 Y 1 B GLY 0 B GLY 1 1 Y 1 B GLN 535 B GLN 2 1 Y 1 B GLY 536 B GLY 3 1 Y 1 B GLN 537 B GLN 4 1 Y 1 B LYS 615 B LYS 82 1 Y 1 B GLU 616 B GLU 83 1 Y 1 B ALA 617 B ALA 84 1 Y 1 B THR 618 B THR 85 1 Y 1 B GLN 619 B GLN 86 1 Y 1 B LYS 620 B LYS 87 1 Y 1 B ALA 621 B ALA 88 1 Y 1 B VAL 622 B VAL 89 1 Y 1 B ASN 623 B ASN 90 1 Y 1 B SER 624 B SER 91 1 Y 1 B ALA 625 B ALA 92 1 Y 1 B THR 626 B THR 93 1 Y 1 B GLY 627 B GLY 94 1 Y 1 B VAL 628 B VAL 95 1 Y 1 B PRO 629 B PRO 96 1 Y 1 B THR 630 B THR 97 1 Y 1 B VAL 631 B VAL 98 1 Y 1 C GLY 0 C GLY 1 1 Y 1 C GLN 535 C GLN 2 1 Y 1 C GLY 536 C GLY 3 1 Y 1 C GLN 537 C GLN 4 1 Y 1 C ALA 614 C ALA 81 1 Y 1 C LYS 615 C LYS 82 1 Y 1 C GLU 616 C GLU 83 1 Y 1 C ALA 617 C ALA 84 1 Y 1 C THR 618 C THR 85 1 Y 1 C GLN 619 C GLN 86 1 Y 1 C LYS 620 C LYS 87 1 Y 1 C ALA 621 C ALA 88 1 Y 1 C VAL 622 C VAL 89 1 Y 1 C ASN 623 C ASN 90 1 Y 1 C SER 624 C SER 91 1 Y 1 C ALA 625 C ALA 92 1 Y 1 C THR 626 C THR 93 1 Y 1 C GLY 627 C GLY 94 1 Y 1 C VAL 628 C VAL 95 1 Y 1 C PRO 629 C PRO 96 1 Y 1 C THR 630 C THR 97 1 Y 1 C VAL 631 C VAL 98 1 Y 1 D GLY 0 D GLY 1 1 Y 1 D GLN 535 D GLN 2 1 Y 1 D GLY 536 D GLY 3 1 Y 1 D GLN 537 D GLN 4 1 Y 1 D ALA 614 D ALA 81 1 Y 1 D LYS 615 D LYS 82 1 Y 1 D GLU 616 D GLU 83 1 Y 1 D ALA 617 D ALA 84 1 Y 1 D THR 618 D THR 85 1 Y 1 D GLN 619 D GLN 86 1 Y 1 D LYS 620 D LYS 87 1 Y 1 D ALA 621 D ALA 88 1 Y 1 D VAL 622 D VAL 89 1 Y 1 D ASN 623 D ASN 90 1 Y 1 D SER 624 D SER 91 1 Y 1 D ALA 625 D ALA 92 1 Y 1 D THR 626 D THR 93 1 Y 1 D GLY 627 D GLY 94 1 Y 1 D VAL 628 D VAL 95 1 Y 1 D PRO 629 D PRO 96 1 Y 1 D THR 630 D THR 97 1 Y 1 D VAL 631 D VAL 98 1 Y 1 B THR 571 -60.18 -84.96 1 B LEU 572 -98.79 42.72 165.610 56.6623 19.820 -5.0464 0.0000 0.0000 -5.0464 0.0000 10.0927 0.9279 0.9277 1. ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B FACTORS. ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U FACTORS. 2. CHLORIDE IONS MODELED ARE PRESENT IN CRYSTALLIZATION BUFFER. 3. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 4. THE MAD PHASES WERE USED AS RESTRAINTS DURING REFINEMENT. 5. NCS RESTRAINTS WERE APPLIED USING BUSTER'S LSSR RESTRAINT REPRESENTATION (-AUTONCS). 0.2121 0.2005 0.2011 2.3000 43.128 1016 20056 5.0700 99.5800 1.000 0.370 RANDOM 1 THROUGHOUT 0.000 MAD 0.357 2.3000 43.128 133 2445 2 0 2310 1208 SINUSOIDAL 2.000 63 HARMONIC 2.000 354 HARMONIC 5.000 2422 HARMONIC 20.000 334 SEMIHARMONIC 5.000 2964 SEMIHARMONIC 4.000 0.010 2422 HARMONIC 2.000 1.050 3292 HARMONIC 2.000 2.180 2.670 0.2442 0.1995 0.2015 2.4200 132 2747 2879 10 4.5800 99.5800 47.537 2.30 43.128 4IVE 20106 -3.000 0.097 1 12.030 99.500 0.756 2.300 2.380 2.4 12727 1919 1 97.800 0.575 2.380 2.480 3.4 16104 2117 1 100.000 0.421 2.480 2.590 4.5 14903 1960 1 100.000 0.304 2.590 2.730 6.1 15557 2043 1 100.000 0.213 2.730 2.900 8.3 15261 2001 1 100.000 0.143 2.900 3.120 11.9 14880 1962 1 100.000 0.107 3.120 3.430 15.5 14875 1996 1 100.000 0.090 3.430 3.930 19.0 12657 2004 1 98.000 0.063 3.930 4.930 23.6 13918 1987 1 99.800 0.053 4.930 43.128 25.0 15126 2103 1 99.700 model building D.C. & J.S. Richardson lab molprobity@kinemage.biochem.duke.edu http://kinemage.biochem.duke.edu/molprobity/ MolProbity package 3beta29 data extraction PDB deposit@deposit.rcsb.org June 10, 2010 C++ http://sw-tools.pdb.org/apps/PDB_EXTRACT/ PDB_EXTRACT package 3.10 phasing George M. Sheldrick gsheldr@shelx.uni-ac.gwdg.de Fortran_77 http://shelx.uni-ac.gwdg.de/SHELX/ SHELX package phasing Eric de La Fortelle sharp-develop@globalphasing.com http://www.globalphasing.com/sharp/ SHARP package data scaling Wolfgang Kabsch http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html XSCALE package March 15, 2012 refinement Gerard Bricogne buster-develop@GlobalPhasing.com http://www.globalphasing.com/buster/ BUSTER-TNT program 2.10.0 data reduction XDS phasing SHELXD refinement BUSTER 2.10.0 Crystal structure of a polyadenylate-binding protein 3 (PABPC3) from Homo sapiens at 2.30 A resolution 1 N N 1 N N 1 N N 1 N N 2 N N 2 N N 3 N N 3 N N 3 N N 3 N N A THR 541 A THR 8 HELX_P A SER 547 A SER 14 1 1 7 A PRO 549 A PRO 16 HELX_P A HIS 569 A HIS 36 1 2 21 A LEU 572 A LEU 39 HELX_P A LEU 581 A LEU 48 1 3 10 A ASP 584 A ASP 51 HELX_P A GLU 593 A GLU 60 1 4 10 A SER 594 A SER 61 HELX_P A GLN 610 A GLN 77 1 5 17 B THR 541 B THR 8 HELX_P B ALA 548 B ALA 15 1 6 8 B PRO 549 B PRO 16 HELX_P B GLN 551 B GLN 18 5 7 3 B LYS 552 B LYS 19 HELX_P B HIS 569 B HIS 36 1 8 18 B LEU 572 B LEU 39 HELX_P B LEU 581 B LEU 48 1 9 10 B ASP 584 B ASP 51 HELX_P B SER 594 B SER 61 1 10 11 B SER 594 B SER 61 HELX_P B GLN 610 B GLN 77 1 11 17 C THR 541 C THR 8 HELX_P C SER 547 C SER 14 1 12 7 C PRO 549 C PRO 16 HELX_P C HIS 569 C HIS 36 1 13 21 C LEU 572 C LEU 39 HELX_P C LEU 581 C LEU 48 1 14 10 C ASP 584 C ASP 51 HELX_P C LEU 592 C LEU 59 1 15 9 C SER 594 C SER 61 HELX_P C GLN 610 C GLN 77 1 16 17 D THR 541 D THR 8 HELX_P D ALA 548 D ALA 15 1 17 8 D PRO 549 D PRO 16 HELX_P D GLN 551 D GLN 18 5 18 3 D LYS 552 D LYS 19 HELX_P D ALA 567 D ALA 34 1 19 16 D LEU 572 D LEU 39 HELX_P D LEU 581 D LEU 48 1 20 10 D ASP 584 D ASP 51 HELX_P D SER 594 D SER 61 1 21 11 D SER 594 D SER 61 HELX_P D GLN 610 D GLN 77 1 22 17 covale 1.351 both A GLN 555 A C GLN 22 1_555 A MSE 556 A N MSE 23 1_555 covale 1.330 both A MSE 556 A C MSE 23 1_555 A LEU 557 A N LEU 24 1_555 covale 1.364 both A ALA 567 A C ALA 34 1_555 A MSE 568 A N MSE 35 1_555 covale 1.337 both A MSE 568 A C MSE 35 1_555 A HIS 569 A N HIS 36 1_555 covale 1.353 both A GLY 578 A C GLY 45 1_555 A MSE 579 A N MSE 46 1_555 covale 1.346 both A MSE 579 A C MSE 46 1_555 A LEU 580 A N LEU 47 1_555 covale 1.350 both A TYR 590 A C TYR 57 1_555 A MSE 591 A N MSE 58 1_555 covale 1.354 both A MSE 591 A C MSE 58 1_555 A LEU 592 A N LEU 59 1_555 covale 1.348 both B GLN 555 B C GLN 22 1_555 B MSE 556 B N MSE 23 1_555 covale 1.338 both B MSE 556 B C MSE 23 1_555 B LEU 557 B N LEU 24 1_555 covale 1.351 both B ALA 567 B C ALA 34 1_555 B MSE 568 B N MSE 35 1_555 covale 1.353 both B MSE 568 B C MSE 35 1_555 B HIS 569 B N HIS 36 1_555 covale 1.355 both B GLY 578 B C GLY 45 1_555 B MSE 579 B N MSE 46 1_555 covale 1.355 both B MSE 579 B C MSE 46 1_555 B LEU 580 B N LEU 47 1_555 covale 1.345 both B TYR 590 B C TYR 57 1_555 B MSE 591 B N MSE 58 1_555 covale 1.347 both B MSE 591 B C MSE 58 1_555 B LEU 592 B N LEU 59 1_555 covale 1.351 both C GLN 555 C C GLN 22 1_555 C MSE 556 C N MSE 23 1_555 covale 1.329 both C MSE 556 C C MSE 23 1_555 C LEU 557 C N LEU 24 1_555 covale 1.341 both C ALA 567 C C ALA 34 1_555 C MSE 568 C N MSE 35 1_555 covale 1.347 both C MSE 568 C C MSE 35 1_555 C HIS 569 C N HIS 36 1_555 covale 1.337 both C GLY 578 C C GLY 45 1_555 C MSE 579 C N MSE 46 1_555 covale 1.362 both C MSE 579 C C MSE 46 1_555 C LEU 580 C N LEU 47 1_555 covale 1.351 both C TYR 590 C C TYR 57 1_555 C MSE 591 C N MSE 58 1_555 covale 1.343 both C MSE 591 C C MSE 58 1_555 C LEU 592 C N LEU 59 1_555 covale 1.348 both D GLN 555 D C GLN 22 1_555 D MSE 556 D N MSE 23 1_555 covale 1.339 both D MSE 556 D C MSE 23 1_555 D LEU 557 D N LEU 24 1_555 covale 1.333 both D ALA 567 D C ALA 34 1_555 D MSE 568 D N MSE 35 1_555 covale 1.351 both D MSE 568 D C MSE 35 1_555 D HIS 569 D N HIS 36 1_555 covale 1.335 both D GLY 578 D C GLY 45 1_555 D MSE 579 D N MSE 46 1_555 covale 1.358 both D MSE 579 D C MSE 46 1_555 D LEU 580 D N LEU 47 1_555 covale 1.352 both D TYR 590 D C TYR 57 1_555 D MSE 591 D N MSE 58 1_555 covale 1.352 both D MSE 591 D C MSE 58 1_555 D LEU 592 D N LEU 59 1_555 RNA BINDING PROTEIN PABP unique domain, PF00658 family, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-BIOLOGY, RNA-BINDING PROTEIN, RNA BINDING PROTEIN, Partnership for T-Cell Biology, TCELL PABP3_HUMAN UNP 1 535 Q9H361 QGQETLTASRLASAPPQKQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLYMLESPESLRSKVDEAVAVLQAHQA KEATQKAVNSATGVPTV 535 631 4IVE 535 631 Q9H361 A 1 2 98 535 631 4IVE 535 631 Q9H361 B 1 2 98 535 631 4IVE 535 631 Q9H361 C 1 2 98 535 631 4IVE 535 631 Q9H361 D 1 2 98 1 expression tag GLY 0 4IVE A Q9H361 UNP 1 2 expression tag GLY 0 4IVE B Q9H361 UNP 1 3 expression tag GLY 0 4IVE C Q9H361 UNP 1 4 expression tag GLY 0 4IVE D Q9H361 UNP 1 BINDING SITE FOR RESIDUE CL A 701 A CL 701 Software 2 BINDING SITE FOR RESIDUE CL C 701 C CL 701 Software 3 A HIS 569 A HIS 36 2 1_555 A THR 571 A THR 38 2 1_555 C HIS 569 C HIS 36 3 1_555 C PRO 570 C PRO 37 3 1_555 C THR 571 C THR 38 3 1_555 78 P 43