0.024917
0.000000
0.000000
0.000000
0.015677
0.000000
0.000000
0.000000
0.008894
0.00000
0.00000
0.00000
Soisson, S.M.
Northrup, A.
Rickert, K.
Patel, S.
Allison, T.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.000
90.000
90.000
40.134
63.789
112.435
C29 H28 N6 O3 S
540.636
1-{5-oxo-3-[1-(piperidin-4-yl)-1H-pyrazol-4-yl]-5H-benzo[4,5]cyclohepta[1,2-b]pyridin-7-yl}-N-(pyridin-2-ylmethyl)methanesulfonamide
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C7 H13 N O3 S
191.248
N-ACETYLMETHIONINE
non-polymer
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C9 H12 N O6 P
261.168
n
O-PHOSPHOTYROSINE
PHOSPHONOTYROSINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
J.Med.Chem.
JMCMAR
0151
0022-2623
56
2294
2310
10.1021/jm301619u
23379595
Discovery of 1-[3-(1-methyl-1H-pyrazol-4-yl)-5-oxo-5H-benzo[4,5]cyclohepta[1,2-b]pyridin-7-yl]-N-(pyridin-2-ylmethyl)methanesulfonamide (MK-8033): A Specific c-Met/Ron dual kinase inhibitor with preferential affinity for the activated state of c-Met.
2013
100
1
CCD
2009-01-12
ADSC QUANTUM 210
SINGLE WAVELENGTH
M
x-ray
1
1.0
1.0
17-ID
APS
1.0
SYNCHROTRON
APS BEAMLINE 17-ID
35010.309
Hepatocyte growth factor receptor
2.7.10.1
UNP residues 1048-1348
1
man
polymer
540.636
1-{5-oxo-3-[1-(piperidin-4-yl)-1H-pyrazol-4-yl]-5H-benzo[4,5]cyclohepta[1,2-b]pyridin-7-yl}-N-(pyridin-2-ylmethyl)methanesulfonamide
1
syn
non-polymer
18.015
water
106
nat
water
HGF receptor, HGF/SF receptor, Proto-oncogene c-Met, Scatter factor receptor, SF receptor, Tyrosine-protein kinase Met
no
yes
(AME)QNTVHIDLSALNPELVQAVQHVVIGPSSLIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVS
QFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKYLASKKFVH
RDLAARNCMLDEKFTVKVADFGLARDMYDKE(PTR)(PTR)SVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLW
ELMTRGAPPYPDVNTFDITVYLLQGRRLLQPEYCPDPLYEVMLKCWHPKAEMRPSFSELVSRISAIFSTFIGEHHHHH
XQNTVHIDLSALNPELVQAVQHVVIGPSSLIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLT
EGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKYLASKKFVHRDLA
ARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPD
VNTFDITVYLLQGRRLLQPEYCPDPLYEVMLKCWHPKAEMRPSFSELVSRISAIFSTFIGEHHHHH
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
sample
MET
9606
Homo sapiens
1
2.06
40.16
VAPOR DIFFUSION, HANGING DROP
7
15.6 mg/ml protein mixed in 1:1 ratio with reservoir containing 150 mM malic acid, 20% PEG3350, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
293
software
repository
Initial release
Refinement description
1
0
2013-12-11
1
1
2017-11-15
_software.classification
_software.contact_author
_software.contact_author_email
_software.date
_software.language
_software.location
_software.name
_software.type
_software.version
Structure of dually phosphorylated c-MET receptor kinase in complex with an MK-2461 analog
RCSB
Y
RCSB
2013-01-23
REL
REL
1JC
1-{5-oxo-3-[1-(piperidin-4-yl)-1H-pyrazol-4-yl]-5H-benzo[4,5]cyclohepta[1,2-b]pyridin-7-yl}-N-(pyridin-2-ylmethyl)methanesulfonamide
HOH
water
461
1
2
1JC
1JC
1401
A
HOH
1
3
HOH
HOH
1501
A
HOH
2
3
HOH
HOH
1502
A
HOH
3
3
HOH
HOH
1503
A
HOH
4
3
HOH
HOH
1504
A
HOH
5
3
HOH
HOH
1505
A
HOH
6
3
HOH
HOH
1506
A
HOH
7
3
HOH
HOH
1507
A
HOH
8
3
HOH
HOH
1508
A
HOH
9
3
HOH
HOH
1509
A
HOH
10
3
HOH
HOH
1510
A
HOH
11
3
HOH
HOH
1511
A
HOH
12
3
HOH
HOH
1512
A
HOH
13
3
HOH
HOH
1513
A
HOH
14
3
HOH
HOH
1514
A
HOH
15
3
HOH
HOH
1515
A
HOH
16
3
HOH
HOH
1516
A
HOH
17
3
HOH
HOH
1517
A
HOH
18
3
HOH
HOH
1518
A
HOH
19
3
HOH
HOH
1519
A
HOH
20
3
HOH
HOH
1520
A
HOH
21
3
HOH
HOH
1521
A
HOH
22
3
HOH
HOH
1522
A
HOH
23
3
HOH
HOH
1523
A
HOH
24
3
HOH
HOH
1524
A
HOH
25
3
HOH
HOH
1525
A
HOH
26
3
HOH
HOH
1526
A
HOH
27
3
HOH
HOH
1527
A
HOH
28
3
HOH
HOH
1528
A
HOH
29
3
HOH
HOH
1529
A
HOH
30
3
HOH
HOH
1530
A
HOH
31
3
HOH
HOH
1531
A
HOH
32
3
HOH
HOH
1532
A
HOH
33
3
HOH
HOH
1533
A
HOH
34
3
HOH
HOH
1534
A
HOH
35
3
HOH
HOH
1535
A
HOH
36
3
HOH
HOH
1536
A
HOH
37
3
HOH
HOH
1537
A
HOH
38
3
HOH
HOH
1538
A
HOH
39
3
HOH
HOH
1539
A
HOH
40
3
HOH
HOH
1540
A
HOH
41
3
HOH
HOH
1541
A
HOH
42
3
HOH
HOH
1542
A
HOH
43
3
HOH
HOH
1543
A
HOH
44
3
HOH
HOH
1544
A
HOH
45
3
HOH
HOH
1545
A
HOH
46
3
HOH
HOH
1546
A
HOH
47
3
HOH
HOH
1547
A
HOH
48
3
HOH
HOH
1548
A
HOH
49
3
HOH
HOH
1549
A
HOH
50
3
HOH
HOH
1550
A
HOH
51
3
HOH
HOH
1551
A
HOH
52
3
HOH
HOH
1552
A
HOH
53
3
HOH
HOH
1553
A
HOH
54
3
HOH
HOH
1554
A
HOH
55
3
HOH
HOH
1555
A
HOH
56
3
HOH
HOH
1556
A
HOH
57
3
HOH
HOH
1557
A
HOH
58
3
HOH
HOH
1558
A
HOH
59
3
HOH
HOH
1559
A
HOH
60
3
HOH
HOH
1560
A
HOH
61
3
HOH
HOH
1561
A
HOH
62
3
HOH
HOH
1562
A
HOH
63
3
HOH
HOH
1563
A
HOH
64
3
HOH
HOH
1564
A
HOH
65
3
HOH
HOH
1565
A
HOH
66
3
HOH
HOH
1566
A
HOH
67
3
HOH
HOH
1567
A
HOH
68
3
HOH
HOH
1568
A
HOH
69
3
HOH
HOH
1569
A
HOH
70
3
HOH
HOH
1570
A
HOH
71
3
HOH
HOH
1571
A
HOH
72
3
HOH
HOH
1572
A
HOH
73
3
HOH
HOH
1573
A
HOH
74
3
HOH
HOH
1574
A
HOH
75
3
HOH
HOH
1575
A
HOH
76
3
HOH
HOH
1576
A
HOH
77
3
HOH
HOH
1577
A
HOH
78
3
HOH
HOH
1578
A
HOH
79
3
HOH
HOH
1579
A
HOH
80
3
HOH
HOH
1580
A
HOH
81
3
HOH
HOH
1581
A
HOH
82
3
HOH
HOH
1582
A
HOH
83
3
HOH
HOH
1583
A
HOH
84
3
HOH
HOH
1584
A
HOH
85
3
HOH
HOH
1585
A
HOH
86
3
HOH
HOH
1586
A
HOH
87
3
HOH
HOH
1587
A
HOH
88
3
HOH
HOH
1588
A
HOH
89
3
HOH
HOH
1589
A
HOH
90
3
HOH
HOH
1590
A
HOH
91
3
HOH
HOH
1591
A
HOH
92
3
HOH
HOH
1592
A
HOH
93
3
HOH
HOH
1593
A
HOH
94
3
HOH
HOH
1594
A
HOH
95
3
HOH
HOH
1595
A
HOH
96
3
HOH
HOH
1596
A
HOH
97
3
HOH
HOH
1597
A
HOH
98
3
HOH
HOH
1598
A
HOH
99
3
HOH
HOH
1599
A
HOH
100
3
HOH
HOH
1600
A
HOH
101
3
HOH
HOH
1601
A
HOH
102
3
HOH
HOH
1602
A
HOH
103
3
HOH
HOH
1603
A
HOH
104
3
HOH
HOH
1604
A
HOH
105
3
HOH
HOH
1605
A
HOH
106
3
HOH
HOH
1606
A
AME
1047
n
1
AME
1047
A
GLN
1048
n
2
GLN
1048
A
ASN
1049
n
3
ASN
1049
A
THR
1050
n
4
THR
1050
A
VAL
1051
n
5
VAL
1051
A
HIS
1052
n
6
HIS
1052
A
ILE
1053
n
7
ILE
1053
A
ASP
1054
n
8
ASP
1054
A
LEU
1055
n
9
LEU
1055
A
SER
1056
n
10
SER
1056
A
ALA
1057
n
11
ALA
1057
A
LEU
1058
n
12
LEU
1058
A
ASN
1059
n
13
ASN
1059
A
PRO
1060
n
14
PRO
1060
A
GLU
1061
n
15
GLU
1061
A
LEU
1062
n
16
LEU
1062
A
VAL
1063
n
17
VAL
1063
A
GLN
1064
n
18
GLN
1064
A
ALA
1065
n
19
ALA
1065
A
VAL
1066
n
20
VAL
1066
A
GLN
1067
n
21
GLN
1067
A
HIS
1068
n
22
HIS
1068
A
VAL
1069
n
23
VAL
1069
A
VAL
1070
n
24
VAL
1070
A
ILE
1071
n
25
ILE
1071
A
GLY
1072
n
26
GLY
1072
A
PRO
1073
n
27
PRO
1073
A
SER
1074
n
28
SER
1074
A
SER
1075
n
29
SER
1075
A
LEU
1076
n
30
LEU
1076
A
ILE
1077
n
31
ILE
1077
A
VAL
1078
n
32
VAL
1078
A
HIS
1079
n
33
HIS
1079
A
PHE
1080
n
34
PHE
1080
A
ASN
1081
n
35
ASN
1081
A
GLU
1082
n
36
GLU
1082
A
VAL
1083
n
37
VAL
1083
A
ILE
1084
n
38
ILE
1084
A
GLY
1085
n
39
GLY
1085
A
ARG
1086
n
40
ARG
1086
A
GLY
1087
n
41
GLY
1087
A
HIS
1088
n
42
HIS
1088
A
PHE
1089
n
43
PHE
1089
A
GLY
1090
n
44
GLY
1090
A
CYS
1091
n
45
CYS
1091
A
VAL
1092
n
46
VAL
1092
A
TYR
1093
n
47
TYR
1093
A
HIS
1094
n
48
HIS
1094
A
GLY
1095
n
49
GLY
1095
A
THR
1096
n
50
THR
1096
A
LEU
1097
n
51
LEU
1097
A
LEU
1098
n
52
LEU
1098
A
ASP
1099
n
53
ASP
1099
A
ASN
1100
n
54
ASN
1100
A
ASP
1101
n
55
ASP
1101
A
GLY
1102
n
56
GLY
1102
A
LYS
1103
n
57
LYS
1103
A
LYS
1104
n
58
LYS
1104
A
ILE
1105
n
59
ILE
1105
A
HIS
1106
n
60
HIS
1106
A
CYS
1107
n
61
CYS
1107
A
ALA
1108
n
62
ALA
1108
A
VAL
1109
n
63
VAL
1109
A
LYS
1110
n
64
LYS
1110
A
SER
1111
n
65
SER
1111
A
LEU
1112
n
66
LEU
1112
A
ASN
1113
n
67
ASN
1113
A
ARG
1114
n
68
ARG
1114
A
ILE
1115
n
69
ILE
1115
A
THR
1116
n
70
THR
1116
A
ASP
1117
n
71
ASP
1117
A
ILE
1118
n
72
ILE
1118
A
GLY
1119
n
73
GLY
1119
A
GLU
1120
n
74
GLU
1120
A
VAL
1121
n
75
VAL
1121
A
SER
1122
n
76
SER
1122
A
GLN
1123
n
77
GLN
1123
A
PHE
1124
n
78
PHE
1124
A
LEU
1125
n
79
LEU
1125
A
THR
1126
n
80
THR
1126
A
GLU
1127
n
81
GLU
1127
A
GLY
1128
n
82
GLY
1128
A
ILE
1129
n
83
ILE
1129
A
ILE
1130
n
84
ILE
1130
A
MET
1131
n
85
MET
1131
A
LYS
1132
n
86
LYS
1132
A
ASP
1133
n
87
ASP
1133
A
PHE
1134
n
88
PHE
1134
A
SER
1135
n
89
SER
1135
A
HIS
1136
n
90
HIS
1136
A
PRO
1137
n
91
PRO
1137
A
ASN
1138
n
92
ASN
1138
A
VAL
1139
n
93
VAL
1139
A
LEU
1140
n
94
LEU
1140
A
SER
1141
n
95
SER
1141
A
LEU
1142
n
96
LEU
1142
A
LEU
1143
n
97
LEU
1143
A
GLY
1144
n
98
GLY
1144
A
ILE
1145
n
99
ILE
1145
A
CYS
1146
n
100
CYS
1146
A
LEU
1147
n
101
LEU
1147
A
ARG
1148
n
102
ARG
1148
A
SER
1149
n
103
SER
1149
A
GLU
1150
n
104
GLU
1150
A
GLY
1151
n
105
GLY
1151
A
SER
1152
n
106
SER
1152
A
PRO
1153
n
107
PRO
1153
A
LEU
1154
n
108
LEU
1154
A
VAL
1155
n
109
VAL
1155
A
VAL
1156
n
110
VAL
1156
A
LEU
1157
n
111
LEU
1157
A
PRO
1158
n
112
PRO
1158
A
TYR
1159
n
113
TYR
1159
A
MET
1160
n
114
MET
1160
A
LYS
1161
n
115
LYS
1161
A
HIS
1162
n
116
HIS
1162
A
GLY
1163
n
117
GLY
1163
A
ASP
1164
n
118
ASP
1164
A
LEU
1165
n
119
LEU
1165
A
ARG
1166
n
120
ARG
1166
A
ASN
1167
n
121
ASN
1167
A
PHE
1168
n
122
PHE
1168
A
ILE
1169
n
123
ILE
1169
A
ARG
1170
n
124
ARG
1170
A
ASN
1171
n
125
ASN
1171
A
GLU
1172
n
126
GLU
1172
A
THR
1173
n
127
THR
1173
A
HIS
1174
n
128
HIS
1174
A
ASN
1175
n
129
ASN
1175
A
PRO
1176
n
130
PRO
1176
A
THR
1177
n
131
THR
1177
A
VAL
1178
n
132
VAL
1178
A
LYS
1179
n
133
LYS
1179
A
ASP
1180
n
134
ASP
1180
A
LEU
1181
n
135
LEU
1181
A
ILE
1182
n
136
ILE
1182
A
GLY
1183
n
137
GLY
1183
A
PHE
1184
n
138
PHE
1184
A
GLY
1185
n
139
GLY
1185
A
LEU
1186
n
140
LEU
1186
A
GLN
1187
n
141
GLN
1187
A
VAL
1188
n
142
VAL
1188
A
ALA
1189
n
143
ALA
1189
A
LYS
1190
n
144
LYS
1190
A
GLY
1191
n
145
GLY
1191
A
MET
1192
n
146
MET
1192
A
LYS
1193
n
147
LYS
1193
A
TYR
1194
n
148
TYR
1194
A
LEU
1195
n
149
LEU
1195
A
ALA
1196
n
150
ALA
1196
A
SER
1197
n
151
SER
1197
A
LYS
1198
n
152
LYS
1198
A
LYS
1199
n
153
LYS
1199
A
PHE
1200
n
154
PHE
1200
A
VAL
1201
n
155
VAL
1201
A
HIS
1202
n
156
HIS
1202
A
ARG
1203
n
157
ARG
1203
A
ASP
1204
n
158
ASP
1204
A
LEU
1205
n
159
LEU
1205
A
ALA
1206
n
160
ALA
1206
A
ALA
1207
n
161
ALA
1207
A
ARG
1208
n
162
ARG
1208
A
ASN
1209
n
163
ASN
1209
A
CYS
1210
n
164
CYS
1210
A
MET
1211
n
165
MET
1211
A
LEU
1212
n
166
LEU
1212
A
ASP
1213
n
167
ASP
1213
A
GLU
1214
n
168
GLU
1214
A
LYS
1215
n
169
LYS
1215
A
PHE
1216
n
170
PHE
1216
A
THR
1217
n
171
THR
1217
A
VAL
1218
n
172
VAL
1218
A
LYS
1219
n
173
LYS
1219
A
VAL
1220
n
174
VAL
1220
A
ALA
1221
n
175
ALA
1221
A
ASP
1222
n
176
ASP
1222
A
PHE
1223
n
177
PHE
1223
A
GLY
1224
n
178
GLY
1224
A
LEU
1225
n
179
LEU
1225
A
ALA
1226
n
180
ALA
1226
A
ARG
1227
n
181
ARG
1227
A
ASP
1228
n
182
ASP
1228
A
MET
1229
n
183
MET
1229
A
TYR
1230
n
184
TYR
1230
A
ASP
1231
n
185
ASP
1231
A
LYS
1232
n
186
LYS
1232
A
GLU
1233
n
187
GLU
1233
A
PTR
1234
n
188
PTR
1234
A
PTR
1235
n
189
PTR
1235
A
SER
1236
n
190
SER
1236
A
VAL
1237
n
191
VAL
1237
A
HIS
1238
n
192
HIS
1238
A
ASN
1239
n
193
ASN
1239
A
n
194
1240
A
n
195
1241
A
n
196
1242
A
n
197
1243
A
LYS
1244
n
198
LYS
1244
A
LEU
1245
n
199
LEU
1245
A
PRO
1246
n
200
PRO
1246
A
VAL
1247
n
201
VAL
1247
A
LYS
1248
n
202
LYS
1248
A
TRP
1249
n
203
TRP
1249
A
MET
1250
n
204
MET
1250
A
ALA
1251
n
205
ALA
1251
A
LEU
1252
n
206
LEU
1252
A
GLU
1253
n
207
GLU
1253
A
SER
1254
n
208
SER
1254
A
LEU
1255
n
209
LEU
1255
A
GLN
1256
n
210
GLN
1256
A
THR
1257
n
211
THR
1257
A
GLN
1258
n
212
GLN
1258
A
LYS
1259
n
213
LYS
1259
A
PHE
1260
n
214
PHE
1260
A
THR
1261
n
215
THR
1261
A
THR
1262
n
216
THR
1262
A
LYS
1263
n
217
LYS
1263
A
SER
1264
n
218
SER
1264
A
ASP
1265
n
219
ASP
1265
A
VAL
1266
n
220
VAL
1266
A
TRP
1267
n
221
TRP
1267
A
SER
1268
n
222
SER
1268
A
PHE
1269
n
223
PHE
1269
A
GLY
1270
n
224
GLY
1270
A
VAL
1271
n
225
VAL
1271
A
LEU
1272
n
226
LEU
1272
A
LEU
1273
n
227
LEU
1273
A
TRP
1274
n
228
TRP
1274
A
GLU
1275
n
229
GLU
1275
A
LEU
1276
n
230
LEU
1276
A
MET
1277
n
231
MET
1277
A
THR
1278
n
232
THR
1278
A
ARG
1279
n
233
ARG
1279
A
GLY
1280
n
234
GLY
1280
A
ALA
1281
n
235
ALA
1281
A
PRO
1282
n
236
PRO
1282
A
PRO
1283
n
237
PRO
1283
A
TYR
1284
n
238
TYR
1284
A
PRO
1285
n
239
PRO
1285
A
ASP
1286
n
240
ASP
1286
A
VAL
1287
n
241
VAL
1287
A
ASN
1288
n
242
ASN
1288
A
THR
1289
n
243
THR
1289
A
PHE
1290
n
244
PHE
1290
A
ASP
1291
n
245
ASP
1291
A
ILE
1292
n
246
ILE
1292
A
THR
1293
n
247
THR
1293
A
VAL
1294
n
248
VAL
1294
A
TYR
1295
n
249
TYR
1295
A
LEU
1296
n
250
LEU
1296
A
LEU
1297
n
251
LEU
1297
A
GLN
1298
n
252
GLN
1298
A
GLY
1299
n
253
GLY
1299
A
ARG
1300
n
254
ARG
1300
A
ARG
1301
n
255
ARG
1301
A
LEU
1302
n
256
LEU
1302
A
LEU
1303
n
257
LEU
1303
A
GLN
1304
n
258
GLN
1304
A
PRO
1305
n
259
PRO
1305
A
GLU
1306
n
260
GLU
1306
A
TYR
1307
n
261
TYR
1307
A
CYS
1308
n
262
CYS
1308
A
PRO
1309
n
263
PRO
1309
A
ASP
1310
n
264
ASP
1310
A
PRO
1311
n
265
PRO
1311
A
LEU
1312
n
266
LEU
1312
A
TYR
1313
n
267
TYR
1313
A
GLU
1314
n
268
GLU
1314
A
VAL
1315
n
269
VAL
1315
A
MET
1316
n
270
MET
1316
A
LEU
1317
n
271
LEU
1317
A
LYS
1318
n
272
LYS
1318
A
CYS
1319
n
273
CYS
1319
A
TRP
1320
n
274
TRP
1320
A
HIS
1321
n
275
HIS
1321
A
PRO
1322
n
276
PRO
1322
A
LYS
1323
n
277
LYS
1323
A
ALA
1324
n
278
ALA
1324
A
GLU
1325
n
279
GLU
1325
A
MET
1326
n
280
MET
1326
A
ARG
1327
n
281
ARG
1327
A
PRO
1328
n
282
PRO
1328
A
SER
1329
n
283
SER
1329
A
PHE
1330
n
284
PHE
1330
A
SER
1331
n
285
SER
1331
A
GLU
1332
n
286
GLU
1332
A
LEU
1333
n
287
LEU
1333
A
VAL
1334
n
288
VAL
1334
A
SER
1335
n
289
SER
1335
A
ARG
1336
n
290
ARG
1336
A
ILE
1337
n
291
ILE
1337
A
SER
1338
n
292
SER
1338
A
ALA
1339
n
293
ALA
1339
A
ILE
1340
n
294
ILE
1340
A
PHE
1341
n
295
PHE
1341
A
SER
1342
n
296
SER
1342
A
THR
1343
n
297
THR
1343
A
PHE
1344
n
298
PHE
1344
A
ILE
1345
n
299
ILE
1345
A
GLY
1346
n
300
GLY
1346
A
GLU
1347
n
301
GLU
1347
A
HIS
1348
n
302
HIS
1348
A
HIS
1349
n
303
HIS
1349
A
HIS
1350
n
304
HIS
1350
A
HIS
1351
n
305
HIS
1351
A
HIS
1352
n
306
HIS
1352
A
author_and_software_defined_assembly
PISA
1
monomeric
A
PTR
1234
O-PHOSPHOTYROSINE
A
PTR
188
TYR
A
PTR
1235
O-PHOSPHOTYROSINE
A
PTR
189
TYR
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
ILE
1084
A
N
ILE
38
A
O
VAL
1092
A
O
VAL
46
A
N
LEU
1097
A
N
LEU
51
A
O
ILE
1105
A
O
ILE
59
A
N
ALA
1108
A
N
ALA
62
A
O
LEU
1157
A
O
LEU
111
A
O
VAL
1156
A
O
VAL
110
A
N
GLY
1144
A
N
GLY
98
A
N
GLY
1163
A
N
GLY
117
A
O
LEU
1212
A
O
LEU
166
A
N
MET
1211
A
N
MET
165
A
O
LYS
1219
A
O
LYS
173
A
N
VAL
1201
A
N
VAL
155
A
O
ARG
1227
A
O
ARG
181
A
N
PTR
1235
A
N
PTR
189
A
O
PHE
1260
A
O
PHE
214
1
A
LYS
1240
A
LYS
194
1
Y
1
A
THR
1241
A
THR
195
1
Y
1
A
GLY
1242
A
GLY
196
1
Y
1
A
ALA
1243
A
ALA
197
1
Y
1
A
THR
1173
-66.30
-71.17
1
A
ASN
1175
31.84
61.49
1
A
ARG
1203
72.01
-13.84
1
A
TYR
1230
55.89
-107.99
1
A
HIS
1238
-123.61
-57.52
98.370
25.8236
9.540
-1.7988
0.0000
0.0000
-6.0616
0.0000
7.8604
0.9212
0.9068
0.2570
0.2040
0.2066
0.2066
1.9900
25.1700
1019
20043
19939
5.1100
97.3000
1.000
1.000
0.2110
RANDOM
1
THROUGHOUT
0.000
MOLECULAR REPLACEMENT
Engh & Huber
0.243
1.9900
25.1700
106
2577
39
0
2432
849
SINUSOIDAL
2.000
62
HARMONIC
8.000
365
HARMONIC
8.000
2539
HARMONIC
20.000
311
SEMIHARMONIC
5.000
3020
SEMIHARMONIC
4.000
0.010
2539
HARMONIC
2.000
1.110
3445
HARMONIC
2.000
2.360
17.070
0.2871
0.2029
0.2075
2.1000
142
2533
2675
10
5.3100
97.3000
1.99
50.000
4IWD
20327
20043
1
1
0.083
0.983
1
9.400
5.200
98.600
0.407
1.99
2.070
1937
0.997
1
3.700
99.100
0.309
2.070
2.150
1994
1.036
1
4.300
99.300
0.230
2.150
2.250
1988
1.033
1
4.900
99.900
0.200
2.250
2.370
2015
1.019
1
5.100
100.000
0.183
2.370
2.520
1997
0.992
1
5.500
99.700
0.145
2.520
2.710
2011
0.959
1
6.300
99.700
0.109
2.710
2.990
2007
0.952
1
6.600
99.800
0.069
2.990
3.420
2047
0.933
1
6.100
99.900
0.048
3.420
4.310
2018
1.007
1
5.400
97.500
0.044
4.310
50.000
2029
0.945
1
4.300
92.100
data reduction
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
DENZO
package
data scaling
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
SCALEPACK
package
phasing
Alexei Vaguine
alexei@ysbl.york.ac.uk
Fortran_77
http://www.ccp4.ac.uk/dist/html/molrep.html
MOLREP
program
refinement
Gerard Bricogne
buster-develop@GlobalPhasing.com
http://www.globalphasing.com/buster/
BUSTER-TNT
program
BUSTER 2.9.7
data extraction
PDB
deposit@deposit.rcsb.org
April 22, 2011
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.11
data collection
ADSC
Quantum
refinement
BUSTER
2.9.7
Hepatocyte growth factor receptor (E.C.2.7.10.1)
Structure of dually phosphorylated c-MET receptor kinase in complex with an MK-8033 analog
1
N
N
2
N
N
3
N
N
A
AME
1047
A
AME
1
HELX_P
A
VAL
1051
A
VAL
5
5
1
5
A
ASP
1054
A
ASP
8
HELX_P
A
LEU
1058
A
LEU
12
5
2
5
A
ASN
1059
A
ASN
13
HELX_P
A
VAL
1069
A
VAL
23
1
3
11
A
GLY
1072
A
GLY
26
HELX_P
A
SER
1074
A
SER
28
5
4
3
A
ASP
1117
A
ASP
71
HELX_P
A
ILE
1130
A
ILE
84
1
5
14
A
LEU
1165
A
LEU
119
HELX_P
A
ASN
1171
A
ASN
125
1
6
7
A
THR
1177
A
THR
131
HELX_P
A
LYS
1198
A
LYS
152
1
7
22
A
ALA
1206
A
ALA
160
HELX_P
A
ARG
1208
A
ARG
162
5
8
3
A
PRO
1246
A
PRO
200
HELX_P
A
MET
1250
A
MET
204
5
9
5
A
ALA
1251
A
ALA
205
HELX_P
A
GLN
1258
A
GLN
212
1
10
8
A
THR
1261
A
THR
215
HELX_P
A
THR
1278
A
THR
232
1
11
18
A
ASN
1288
A
ASN
242
HELX_P
A
PHE
1290
A
PHE
244
5
12
3
A
ASP
1291
A
ASP
245
HELX_P
A
GLN
1298
A
GLN
252
1
13
8
A
PRO
1309
A
PRO
263
HELX_P
A
TRP
1320
A
TRP
274
1
14
12
A
LYS
1323
A
LYS
277
HELX_P
A
ARG
1327
A
ARG
281
5
15
5
A
SER
1329
A
SER
283
HELX_P
A
PHE
1344
A
PHE
298
1
16
16
covale
1.351
A
AME
1047
A
C
AME
1
1_555
A
GLN
1048
A
N
GLN
2
1_555
covale
1.329
A
GLU
1233
A
C
GLU
187
1_555
A
PTR
1234
A
N
PTR
188
1_555
covale
1.313
A
PTR
1234
A
C
PTR
188
1_555
A
PTR
1235
A
N
PTR
189
1_555
covale
1.347
A
PTR
1235
A
C
PTR
189
1_555
A
SER
1236
A
N
SER
190
1_555
TRANSFERASE/TRANSFERASE INHIBITOR
Protein kinase, tyrosine kinase, TRANSFERASE-TRANSFERASE INHIBITOR complex
MET_HUMAN
UNP
1
1048
P08581
QNTVHIDLSALNPELVQAVQHVVIGPSSLIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTE
GIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKYLASKKFVHRDLAA
RNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDV
NTFDITVYLLQGRRLLQPEYCPDPLYEVMLKCWHPKAEMRPSFSELVSRISAIFSTFIGEH
1048
1348
4IWD
1048
1348
P08581
A
1
2
302
1
EXPRESSION TAG
AME
1047
4IWD
A
P08581
UNP
1
1
EXPRESSION TAG
HIS
1349
4IWD
A
P08581
UNP
303
1
EXPRESSION TAG
HIS
1350
4IWD
A
P08581
UNP
304
1
EXPRESSION TAG
HIS
1351
4IWD
A
P08581
UNP
305
1
EXPRESSION TAG
HIS
1352
4IWD
A
P08581
UNP
306
5
3
2
2
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
LEU
1076
A
LEU
30
A
ARG
1086
A
ARG
40
A
CYS
1091
A
CYS
45
A
LEU
1098
A
LEU
52
A
LYS
1104
A
LYS
58
A
SER
1111
A
SER
65
A
LEU
1154
A
LEU
108
A
PRO
1158
A
PRO
112
A
GLY
1144
A
GLY
98
A
CYS
1146
A
CYS
100
A
GLY
1163
A
GLY
117
A
ASP
1164
A
ASP
118
A
CYS
1210
A
CYS
164
A
LEU
1212
A
LEU
166
A
VAL
1218
A
VAL
172
A
VAL
1220
A
VAL
174
A
PHE
1200
A
PHE
154
A
VAL
1201
A
VAL
155
A
ARG
1227
A
ARG
181
A
ASP
1228
A
ASP
182
A
PTR
1235
A
PTR
189
A
SER
1236
A
SER
190
A
LYS
1259
A
LYS
213
A
PHE
1260
A
PHE
214
BINDING SITE FOR RESIDUE 1JC A 1401
Software
22
A
ILE
1084
A
ILE
38
22
1_555
A
GLY
1085
A
GLY
39
22
1_555
A
ARG
1086
A
ARG
40
22
1_555
A
GLY
1087
A
GLY
41
22
1_555
A
HIS
1088
A
HIS
42
22
1_555
A
VAL
1092
A
VAL
46
22
1_555
A
ALA
1108
A
ALA
62
22
1_555
A
PRO
1158
A
PRO
112
22
1_555
A
TYR
1159
A
TYR
113
22
1_555
A
MET
1160
A
MET
114
22
1_555
A
LYS
1161
A
LYS
115
22
1_555
A
GLY
1163
A
GLY
117
22
1_555
A
ARG
1208
A
ARG
162
22
1_555
A
ASN
1209
A
ASN
163
22
1_555
A
MET
1211
A
MET
165
22
1_555
A
ALA
1221
A
ALA
175
22
1_555
A
ASP
1222
A
ASP
176
22
1_555
A
GLN
1304
A
GLN
258
22
3_544
A
HOH
1510
C
HOH
22
1_555
A
HOH
1528
C
HOH
22
1_555
A
HOH
1560
C
HOH
22
1_555
A
HOH
1585
C
HOH
22
3_544
19
P 21 21 21