0.020825
0.012023
0.000000
-0.000000
0.024046
0.000000
0.000000
-0.000000
0.004580
0.000000
0.000000
0.000000
Martin, R.N.A.
McGeehan, J.E.
Ball, N.J.
Streeter, S.D.
Thresh, S.-J.
Kneale, G.G.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
12
90.000
90.000
120.000
48.020
48.020
218.350
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
O
N
75
N
P
N
76
N
O
N
77
N
O
N
78
N
O
N
79
N
C
N
80
R
C
N
81
N
O
N
82
S
C
N
83
N
O
N
84
N
C
N
85
R
C
Y
86
N
N
Y
87
N
C
Y
88
N
N
Y
89
N
C
Y
90
N
C
N
91
N
N
Y
92
N
N
Y
93
N
C
Y
94
N
N
Y
95
N
C
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
O
N
111
N
P
N
112
N
O
N
113
N
O
N
114
N
O
N
115
N
C
N
116
R
C
N
117
N
O
N
118
S
C
N
119
N
O
N
120
N
C
N
121
R
C
N
122
N
N
N
123
N
C
N
124
N
O
N
125
N
N
N
126
N
C
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
O
N
145
N
P
N
146
N
O
N
147
N
O
N
148
N
O
N
149
N
C
N
150
R
C
N
151
N
O
N
152
S
C
N
153
N
O
N
154
N
C
N
155
R
C
Y
156
N
N
Y
157
N
C
Y
158
N
N
Y
159
N
C
N
160
N
C
N
161
N
O
N
162
N
N
N
163
N
C
N
164
N
N
N
165
N
N
Y
166
N
C
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
O
N
182
N
P
N
183
N
O
N
184
N
O
N
185
N
O
N
186
N
C
N
187
R
C
N
188
N
O
N
189
S
C
N
190
N
O
N
191
N
C
N
192
R
C
N
193
N
N
N
194
N
C
N
195
N
O
N
196
N
N
N
197
N
C
N
198
N
O
N
199
N
C
N
200
N
C
N
201
N
C
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
N
N
218
S
C
N
219
N
C
N
220
N
O
N
221
N
C
N
222
N
C
N
223
N
C
N
224
N
O
N
225
N
N
N
226
N
O
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
N
N
238
S
C
N
239
N
C
N
240
N
O
N
241
N
C
N
242
N
C
N
243
N
C
N
244
N
O
N
245
N
O
N
246
N
O
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
N
N
257
N
C
N
258
N
C
N
259
N
O
N
260
N
O
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
N
N
267
S
C
N
268
N
C
N
269
N
O
N
270
N
C
Y
271
N
C
Y
272
N
N
Y
273
N
C
Y
274
N
C
Y
275
N
N
N
276
N
O
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
O
N
288
N
H
N
289
N
H
N
290
N
N
N
291
S
C
N
292
N
C
N
293
N
O
N
294
S
C
N
295
N
C
N
296
N
C
N
297
N
C
N
298
N
O
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
N
N
313
S
C
N
314
N
C
N
315
N
O
N
316
N
C
N
317
N
C
N
318
N
C
N
319
N
C
N
320
N
O
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
N
N
335
S
C
N
336
N
C
N
337
N
O
N
338
N
C
N
339
N
C
N
340
N
C
N
341
N
C
N
342
N
N
N
343
N
O
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
N
N
360
S
C
N
361
N
C
N
362
N
O
N
363
N
C
N
364
N
C
N
365
N
S
N
366
N
C
N
367
N
O
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
N
N
380
S
C
N
381
N
C
N
382
N
O
N
383
N
C
Y
384
N
C
Y
385
N
C
Y
386
N
C
Y
387
N
C
Y
388
N
C
Y
389
N
C
N
390
N
O
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
N
N
403
S
C
N
404
N
C
N
405
N
O
N
406
N
C
N
407
N
O
N
408
N
O
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
N
N
417
S
C
N
418
N
C
N
419
N
O
N
420
R
C
N
421
N
O
N
422
N
C
N
423
N
O
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
N
N
434
S
C
N
435
N
C
N
436
N
O
N
437
N
C
Y
438
N
C
Y
439
N
C
Y
440
N
C
Y
441
N
C
Y
442
N
C
Y
443
N
C
N
444
N
O
N
445
N
O
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
H
N
450
N
H
N
451
N
H
N
452
N
H
N
453
N
H
N
454
N
H
N
455
N
H
N
456
N
H
N
457
N
N
N
458
S
C
N
459
N
C
N
460
N
O
N
461
N
C
N
462
N
C
N
463
N
C
N
464
N
O
N
465
N
H
N
466
N
H
N
467
N
H
N
468
N
H
N
469
N
H
N
470
N
H
N
471
N
H
N
472
N
H
N
473
N
H
N
474
N
H
N
475
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
doub
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
Y
93
N
sing
Y
94
N
sing
Y
95
N
doub
N
96
N
sing
Y
97
N
sing
Y
98
N
sing
Y
99
N
doub
N
100
N
sing
Y
101
N
doub
N
102
N
sing
N
103
N
sing
Y
104
N
sing
Y
105
N
doub
N
106
N
sing
Y
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
doub
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
doub
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
doub
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
doub
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
Y
166
N
sing
Y
167
N
sing
Y
168
N
doub
N
169
N
sing
Y
170
N
sing
N
171
N
sing
Y
172
N
doub
N
173
N
doub
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
doub
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
doub
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
doub
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
doub
N
212
N
sing
N
213
N
sing
N
214
N
doub
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
doub
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
doub
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
doub
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
doub
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
doub
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
doub
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
Y
276
N
sing
Y
277
N
doub
Y
278
N
doub
N
279
N
sing
Y
280
N
sing
N
281
N
sing
Y
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
doub
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
doub
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
doub
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
doub
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
doub
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
Y
384
N
doub
Y
385
N
sing
Y
386
N
sing
N
387
N
sing
Y
388
N
doub
N
389
N
sing
Y
390
N
doub
N
391
N
sing
Y
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
doub
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
doub
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
doub
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
Y
436
N
doub
Y
437
N
sing
Y
438
N
sing
N
439
N
sing
Y
440
N
doub
N
441
N
sing
Y
442
N
doub
N
443
N
sing
Y
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
doub
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
sing
N
464
N
sing
N
465
N
sing
N
466
N
sing
DK
Acta Crystallogr.,Sect.F
1744-3091
69
962
966
10.1107/S174430911302126X
23989141
Structural analysis of DNA-protein complexes regulating the restriction-modification system Esp1396I.
2013
UK
Nucleic Acids Res.
NARHAD
0389
0305-1048
40
4158
4167
10.1093/nar/gkr1250
22210861
Recognition of dual symmetry by the controller protein C.Esp1396I based on the structure of the transcriptional activation complex.
2012
UK
Nucleic Acids Res.
NARHAD
0389
0305-1048
40
10532
10542
10.1093/nar/gks718
22941636
The structural basis of differential DNA sequence recognition by restriction-modification controller proteins.
2012
DK
Acta Crystallogr.,Sect.D
ABCRE6
0766
0907-4449
65
900
905
10.1107/S0907444909020514
19690367
Structure of the restriction-modification controller protein C.Esp1396I.
2009
DK
To Be Published
ABCRE6
0766
0907-4449
10.2210/pdb4iwr/pdb
pdb_00004iwr
100
1
CCD
2008-11-06
ADSC QUANTUM 4
Si(111) double crystal monochromator
SINGLE WAVELENGTH
M
x-ray
1
0.933000
1.0
ID14-4
ESRF
0.933000
SYNCHROTRON
ESRF BEAMLINE ID14-4
9521.175
Regulatory protein
4
man
polymer
25 base pair operator (OL)
7718.992
DNA (25-MER)
2
syn
polymer
25 base pair operator (OL) (complimentary strand)
7634.976
DNA (25-MER)
2
syn
polymer
18.015
water
23
nat
water
no
no
GSHMESFLLSKVSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIERNSRNLTIKSLELIMKGLEVSDVVFFEMLIKEILK
HD
GSHMESFLLSKVSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIERNSRNLTIKSLELIMKGLEVSDVVFFEMLIKEILK
HD
A,B,E,F
polypeptide(L)
no
no
(DA)(DT)(DG)(DT)(DG)(DA)(DC)(DT)(DT)(DA)(DT)(DA)(DG)(DT)(DC)(DC)(DG)(DT)(DG)(DT)
(DG)(DA)(DT)(DT)(DA)
ATGTGACTTATAGTCCGTGTGATTA
C,G
polydeoxyribonucleotide
no
no
(DT)(DA)(DA)(DT)(DC)(DA)(DC)(DA)(DC)(DG)(DG)(DA)(DC)(DT)(DA)(DT)(DA)(DA)(DG)(DT)
(DC)(DA)(DC)(DA)(DT)
TAATCACACGGACTATAAGTCACAT
D,H
polydeoxyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
RFL1396
sample
esp1396IC
211595
Enterobacter sp.
469008
Escherichia coli
BL21(DE3)pLysS
Plasmid
pET28
1
2.11
41.78
VAPOR DIFFUSION, HANGING DROP
4
0.1 M PCB buffer, 20 % v/v PEG 1500, 10 mM spermidine , pH 4, VAPOR DIFFUSION, HANGING DROP, temperature 289K
289
-12.514
1
20
C
2
D
24
15.128
C_DT2:DA24_D
1
-16.404
-0.270
0.203
-0.180
-21.076
1
19
C
3
D
23
3.802
C_DG3:DC23_D
2
-7.314
-0.608
-0.132
-0.003
-9.731
1
20
C
4
D
22
-2.491
C_DT4:DA22_D
3
-6.916
-0.365
0.017
-0.076
6.853
1
19
C
5
D
21
6.239
C_DG5:DC21_D
4
-4.767
-0.397
0.102
0.032
10.935
1
20
C
6
D
20
2.594
C_DA6:DT20_D
5
-10.211
0.003
0.248
-0.053
11.751
1
19
C
7
D
19
1.213
C_DC7:DG19_D
6
-12.691
-0.072
0.108
-0.073
11.158
1
20
C
8
D
18
4.670
C_DT8:DA18_D
7
-16.948
0.187
-0.071
-0.114
9.100
1
20
C
9
D
17
-0.451
C_DT9:DA17_D
8
-11.770
-0.392
-0.355
-0.070
-5.820
1
20
C
10
D
16
1.862
C_DA10:DT16_D
9
-5.304
-0.141
-0.276
-0.192
9.273
1
20
C
11
D
15
1.676
C_DT11:DA15_D
10
-2.164
-0.134
-0.208
-0.150
-2.357
1
20
C
12
D
14
4.213
C_DA12:DT14_D
11
-15.593
0.129
0.287
-0.077
-8.125
1
19
C
13
D
13
-6.962
C_DG13:DC13_D
12
-15.678
0.104
0.106
-0.231
-14.920
1
20
C
14
D
12
0.794
C_DT14:DA12_D
13
-9.008
-0.325
0.238
-0.016
-7.158
1
19
C
15
D
11
-2.950
C_DC15:DG11_D
14
-2.807
0.316
-0.016
-0.239
-5.419
1
19
C
16
D
10
3.436
C_DC16:DG10_D
15
-11.572
0.258
0.218
-0.193
-18.298
1
19
C
17
D
9
1.904
C_DG17:DC9_D
16
-17.069
-0.551
-0.400
-0.062
-9.262
1
20
C
18
D
8
3.745
C_DT18:DA8_D
17
-11.152
-0.263
-0.238
0.166
4.987
1
19
C
19
D
7
-2.435
C_DG19:DC7_D
18
2.309
-0.284
0.541
-0.234
3.817
1
20
C
20
D
6
-5.570
C_DT20:DA6_D
19
-5.826
-0.125
-0.094
-0.063
-6.525
1
19
C
21
D
5
10.978
C_DG21:DC5_D
20
-19.933
-0.159
-0.279
0.116
-16.665
1
20
C
22
D
4
-3.602
C_DA22:DT4_D
21
-9.415
1.134
-0.211
0.188
-9.974
1
C
23
D
3
18.257
C_DT23:DA3_D
22
-13.307
0.341
-0.202
0.172
-8.924
1
20
C
24
D
2
-8.122
C_DT24:DA2_D
23
-12.329
-0.519
-0.491
-0.103
-24.373
5
G
1
H
25
47.187
G_DA1:DT25_H
24
-5.191
3.107
-0.268
0.014
-10.656
1
20
G
2
H
24
13.381
G_DT2:DA24_H
25
-16.587
-0.443
0.181
-0.239
-23.974
1
19
G
3
H
23
4.559
G_DG3:DC23_H
26
-7.017
-0.405
-0.376
0.067
-5.066
1
20
G
4
H
22
-3.359
G_DT4:DA22_H
27
-6.377
-0.363
-0.071
-0.030
6.147
1
19
G
5
H
21
7.861
G_DG5:DC21_H
28
-3.910
-0.461
-0.084
0.140
11.450
1
20
G
6
H
20
3.523
G_DA6:DT20_H
29
-11.259
-0.192
0.257
-0.132
10.113
1
19
G
7
H
19
1.558
G_DC7:DG19_H
30
-12.896
0.127
0.161
-0.072
6.821
1
20
G
8
H
18
6.423
G_DT8:DA18_H
31
-14.366
0.191
-0.074
-0.083
13.277
1
20
G
9
H
17
1.574
G_DT9:DA17_H
32
-15.667
-0.029
-0.265
-0.124
-9.745
1
20
G
10
H
16
3.500
G_DA10:DT16_H
33
-6.810
0.013
-0.230
-0.144
7.735
1
20
G
11
H
15
1.819
G_DT11:DA15_H
34
-1.746
-0.157
-0.370
-0.162
-3.848
1
20
G
12
H
14
5.673
G_DA12:DT14_H
35
-16.936
0.108
0.248
0.018
-1.761
1
19
G
13
H
13
-2.647
G_DG13:DC13_H
36
-17.199
-0.032
0.256
-0.178
-14.820
1
20
G
14
H
12
3.359
G_DT14:DA12_H
37
-9.408
-0.040
0.511
0.064
-7.036
1
19
G
15
H
11
-2.345
G_DC15:DG11_H
38
-6.913
0.213
0.028
-0.176
-6.793
1
19
G
16
H
10
5.975
G_DC16:DG10_H
39
-13.276
0.337
0.174
-0.204
-17.928
1
19
G
17
H
9
2.554
G_DG17:DC9_H
40
-15.058
-0.487
-0.344
-0.007
-6.704
1
20
G
18
H
8
4.545
G_DT18:DA8_H
41
-11.232
-0.435
-0.301
0.136
-4.531
1
19
G
19
H
7
0.050
G_DG19:DC7_H
42
-7.070
-0.373
-0.104
-0.322
9.396
1
20
G
20
H
6
-5.936
G_DT20:DA6_H
43
-4.992
0.024
-0.072
0.054
-3.883
1
19
G
21
H
5
9.821
G_DG21:DC5_H
44
-22.180
-0.075
-0.188
0.060
-19.380
1
20
G
22
H
4
-4.858
G_DA22:DT4_H
45
-9.077
1.101
-0.124
0.321
-12.173
1
20
G
23
H
3
0.033
G_DT23:DA3_H
46
-16.105
0.637
0.330
-0.021
-0.868
1
20
G
24
H
2
-21.454
G_DT24:DA2_H
47
-11.552
-1.559
-0.410
-0.312
3.529
38.596
C
C
2
3
-3.250
D
D
24
23
3.527
-2.147
-1.241
0.051
CC_DT2DG3:DC23DA24_DD
1
-0.306
0.463
38.537
0.363
1.838
2.891
25.998
C
C
3
4
13.990
D
D
23
22
3.121
6.234
-0.364
-0.577
CC_DG3DT4:DA22DC23_DD
2
0.351
-0.787
25.249
-2.882
0.899
3.270
35.762
C
C
4
5
5.956
D
D
22
21
3.181
3.647
0.317
1.412
CC_DT4DG5:DC21DA22_DD
3
-2.926
4.778
35.465
1.778
-0.934
3.170
34.053
C
C
5
6
7.419
D
D
21
20
3.254
4.332
0.199
-0.387
CC_DG5DA6:DT20DC21_DD
4
-1.515
2.594
33.751
-1.342
-0.579
2.971
28.139
C
C
6
7
13.472
D
D
20
19
3.259
6.493
0.190
-0.896
CC_DA6DC7:DG19DT20_DD
5
-0.100
0.208
27.394
-3.312
-0.413
3.116
35.695
C
C
7
8
22.208
D
D
19
18
3.468
13.261
-0.725
0.043
CC_DC7DT8:DA18DG19_DD
6
4.984
-8.347
32.847
-1.948
1.942
3.324
36.335
C
C
8
9
-7.540
D
D
18
17
3.349
-4.688
-0.062
-0.044
CC_DT8DT9:DA17DA18_DD
7
1.409
-2.266
36.015
0.600
0.301
3.673
44.773
C
C
9
10
-3.639
D
D
17
16
3.657
-2.768
0.710
0.216
CC_DT9DA10:DT16DA17_DD
8
2.728
-3.586
44.612
0.567
-0.653
3.005
27.980
C
C
10
11
-6.297
D
D
16
15
2.978
-3.038
0.102
-0.463
CC_DA10DT11:DA15DT16_DD
9
-0.989
2.050
27.801
-0.297
-0.425
3.452
47.908
C
C
11
12
-10.404
D
D
15
14
3.571
-8.404
-0.225
0.460
CC_DT11DA12:DT14DA15_DD
10
-3.000
3.714
47.118
1.288
0.019
3.358
33.568
C
C
12
13
11.050
D
D
14
13
3.557
6.345
0.137
-0.727
CC_DA12DG13:DC13DT14_DD
11
-0.975
1.699
32.966
-2.369
-0.408
3.451
32.858
C
C
13
14
-3.252
D
D
13
12
3.396
-1.838
-0.308
-1.258
CC_DG13DT14:DA12DC13_DD
12
0.819
-1.448
32.798
-1.894
0.691
3.187
31.365
C
C
14
15
3.155
D
D
12
11
3.224
1.704
-0.257
-0.186
CC_DT14DC15:DG11DA12_DD
13
1.979
-3.665
31.259
-0.659
0.840
3.246
36.035
C
C
15
16
5.676
D
D
11
10
3.278
3.505
0.497
0.088
CC_DC15DC16:DG10DG11_DD
14
-1.684
2.728
35.831
-0.355
-1.043
2.884
28.141
C
C
16
17
21.994
D
D
10
9
3.541
10.207
1.083
-1.565
CC_DC16DG17:DC9DG10_DD
15
10.146
-21.864
24.247
-5.751
0.290
2.588
32.261
C
C
17
18
21.885
D
D
9
8
3.032
11.888
-0.559
-0.660
CC_DG17DT18:DA8DC9_DD
16
0.183
-0.337
30.044
-3.071
1.036
3.062
36.833
C
C
18
19
0.946
D
D
8
7
3.134
0.594
0.026
-0.245
CC_DT18DG19:DC7DA8_DD
17
-7.592
12.097
36.064
-0.464
-1.028
3.102
31.937
C
C
19
20
11.813
D
D
7
6
3.400
6.440
-0.705
-0.587
CC_DG19DT20:DA6DC7_DD
18
4.103
-7.527
31.034
-2.245
2.032
3.617
32.740
C
C
20
21
21.068
D
D
6
5
3.654
11.619
0.631
0.440
CC_DT20DG21:DC5DA6_DD
19
2.486
-4.509
30.563
-1.529
-0.626
3.490
43.275
C
C
21
22
5.081
D
D
5
4
3.450
3.728
-0.808
-0.389
CC_DG21DA22:DT4DC5_DD
20
-6.988
9.524
42.578
-0.917
0.366
3.085
28.346
C
C
22
23
3.669
D
D
4
3
2.972
1.785
1.172
-0.726
CC_DA22DT23:DA3DT4_DD
21
5.254
-10.797
27.808
-1.868
-1.259
3.227
33.757
C
C
23
24
13.493
D
D
3
2
3.423
7.765
-1.281
-0.141
CC_DT23DT24:DA2DA3_DD
22
1.942
-3.375
32.821
-1.540
2.530
2.912
12.030
G
G
1
2
8.803
H
H
25
24
2.931
1.826
-1.474
-1.407
GG_DA1DT2:DA24DT25_HH
23
-2.311
11.138
11.666
-8.853
4.325
3.701
40.663
G
G
2
3
-2.258
H
H
24
23
3.772
-1.568
-1.145
0.061
GG_DT2DG3:DC23DA24_HH
24
2.263
-3.259
40.574
0.287
1.934
2.695
25.623
G
G
3
4
13.411
H
H
23
22
2.859
5.896
-0.397
-0.421
GG_DG3DT4:DA22DC23_HH
25
-0.371
0.844
24.944
-2.385
0.805
3.512
34.404
G
G
4
5
9.876
H
H
22
21
3.358
5.813
0.379
1.342
GG_DT4DG5:DC21DA22_HH
26
-1.610
2.735
33.886
1.309
-0.906
2.993
32.310
G
G
5
6
8.812
H
H
21
20
3.123
4.874
0.201
-0.338
GG_DG5DA6:DT20DC21_HH
27
-3.946
7.134
31.711
-1.422
-1.022
3.224
31.361
G
G
6
7
7.952
H
H
20
19
3.371
4.285
0.217
-0.877
GG_DA6DC7:DG19DT20_HH
28
-0.086
0.160
31.074
-2.440
-0.418
2.997
35.958
G
G
7
8
25.519
H
H
19
18
3.454
15.236
-0.654
-0.076
GG_DC7DT8:DA18DG19_HH
29
4.822
-8.077
32.317
-2.390
1.777
3.108
38.424
G
G
8
9
-10.412
H
H
18
17
3.167
-6.817
0.015
0.059
GG_DT8DT9:DA17DA18_HH
30
1.698
-2.594
37.800
0.912
0.182
3.912
44.202
G
G
9
10
-2.901
H
H
17
16
3.895
-2.181
0.655
0.255
GG_DT9DA10:DT16DA17_HH
31
2.878
-3.829
44.061
0.582
-0.549
2.961
26.319
G
G
10
11
-7.673
H
H
16
15
2.918
-3.484
0.006
-0.522
GG_DA10DT11:DA15DT16_HH
32
0.311
-0.684
26.090
-0.304
0.062
3.434
48.417
G
G
11
12
-6.552
H
H
15
14
3.510
-5.358
-0.146
0.562
GG_DT11DA12:DT14DA15_HH
33
-3.961
4.843
47.984
1.128
-0.149
3.249
31.851
G
G
12
13
5.349
H
H
14
13
3.350
2.928
0.221
-0.632
GG_DA12DG13:DC13DT14_HH
34
-2.746
5.016
31.603
-1.692
-0.909
3.649
35.182
G
G
13
14
-3.839
H
H
13
12
3.577
-2.319
-0.301
-1.269
GG_DG13DT14:DA12DC13_HH
35
0.292
-0.483
35.107
-1.718
0.546
3.095
29.143
G
G
14
15
6.522
H
H
12
11
3.198
3.269
-0.273
-0.316
GG_DT14DC15:DG11DA12_HH
36
3.243
-6.470
28.785
-1.319
1.227
3.313
36.258
G
G
15
16
6.600
H
H
11
10
3.316
4.099
0.487
0.232
GG_DC15DC16:DG10DG11_HH
37
-0.610
0.983
36.029
-0.212
-0.870
2.889
27.804
G
G
16
17
21.599
H
H
10
9
3.517
10.009
0.970
-1.469
GG_DC16DG17:DC9DG10_HH
38
7.784
-16.797
24.795
-5.552
-0.078
2.641
29.834
G
G
17
18
18.551
H
H
9
8
3.031
9.393
-0.572
-0.711
GG_DG17DT18:DA8DC9_HH
39
1.127
-2.227
28.327
-3.123
1.320
3.392
37.912
G
G
18
19
11.835
H
H
8
7
3.465
7.630
0.004
0.033
GG_DT18DG19:DC7DA8_HH
40
-3.407
5.285
37.012
-0.985
-0.469
2.960
31.504
G
G
19
20
2.708
H
H
7
6
2.930
1.469
-0.809
-0.309
GG_DG19DT20:DA6DC7_HH
41
-2.126
3.921
31.401
-0.817
1.133
3.739
34.856
G
G
20
21
23.523
H
H
6
5
3.838
13.702
0.697
0.372
GG_DT20DG21:DC5DA6_HH
42
3.883
-6.667
31.896
-1.906
-0.447
3.548
41.891
G
G
21
22
7.287
H
H
5
4
3.542
5.169
-0.797
-0.458
GG_DG21DA22:DT4DC5_HH
43
-7.822
11.026
40.874
-1.233
0.218
2.930
27.919
G
G
22
23
3.004
H
H
4
3
3.003
1.448
0.583
-0.916
GG_DA22DT23:DA3DT4_HH
44
-1.033
2.142
27.864
-2.211
-1.432
2.933
33.871
G
G
23
24
-2.631
H
H
3
2
3.046
-1.529
-0.907
-0.221
GG_DT23DT24:DA2DA3_HH
45
3.865
-6.650
33.622
-0.153
2.128
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_ref_seq_dif
repository
Initial release
Data collection
Database references
Refinement description
1
0
2013-09-11
1
1
2023-09-20
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
S52A Mutant free protein
R46A Mutant free protein
R46A Mutant free protein
Native free protein
R35A Mutant free protein
Native DNA bound tetramer
Native DNA bound dimer (OL)
Native DNA bound dimer (OM)
Native free protein (high resolution)
T36A Mutant free protein
Y37F Mutant free protein
Native DNA bound dimer (OR)
Y37A Mutant free protein
Y37F DNA bound dimer (OM)
RCSB
Y
RCSB
2013-01-24
REL
REL
HOH
water
3S8Q
pdb entry 3S8Q
PDB
experimental model
HOH
2
4
HOH
HOH
101
A
HOH
4
4
HOH
HOH
102
A
HOH
17
4
HOH
HOH
103
A
HOH
20
4
HOH
HOH
104
A
HOH
21
4
HOH
HOH
105
A
HOH
6
4
HOH
HOH
101
B
HOH
10
4
HOH
HOH
102
B
HOH
18
4
HOH
HOH
103
B
HOH
19
4
HOH
HOH
104
B
HOH
7
4
HOH
HOH
101
C
HOH
15
4
HOH
HOH
102
C
HOH
16
4
HOH
HOH
103
C
HOH
8
4
HOH
HOH
101
D
HOH
14
4
HOH
HOH
102
D
HOH
22
4
HOH
HOH
103
D
HOH
23
4
HOH
HOH
104
D
HOH
1
4
HOH
HOH
101
E
HOH
3
4
HOH
HOH
102
E
HOH
5
4
HOH
HOH
101
F
HOH
9
4
HOH
HOH
102
F
HOH
13
4
HOH
HOH
103
F
HOH
11
4
HOH
HOH
101
G
HOH
12
4
HOH
HOH
101
H
4.200
4.200
41.590
41.590
Phaser MODE: MR_AUTO
n
1
-2
A
n
2
-1
A
n
3
0
A
n
4
1
A
GLU
2
n
5
GLU
2
A
SER
3
n
6
SER
3
A
PHE
4
n
7
PHE
4
A
LEU
5
n
8
LEU
5
A
LEU
6
n
9
LEU
6
A
SER
7
n
10
SER
7
A
LYS
8
n
11
LYS
8
A
VAL
9
n
12
VAL
9
A
SER
10
n
13
SER
10
A
PHE
11
n
14
PHE
11
A
VAL
12
n
15
VAL
12
A
ILE
13
n
16
ILE
13
A
LYS
14
n
17
LYS
14
A
LYS
15
n
18
LYS
15
A
ILE
16
n
19
ILE
16
A
ARG
17
n
20
ARG
17
A
LEU
18
n
21
LEU
18
A
GLU
19
n
22
GLU
19
A
LYS
20
n
23
LYS
20
A
GLY
21
n
24
GLY
21
A
MET
22
n
25
MET
22
A
THR
23
n
26
THR
23
A
GLN
24
n
27
GLN
24
A
GLU
25
n
28
GLU
25
A
ASP
26
n
29
ASP
26
A
LEU
27
n
30
LEU
27
A
ALA
28
n
31
ALA
28
A
TYR
29
n
32
TYR
29
A
LYS
30
n
33
LYS
30
A
SER
31
n
34
SER
31
A
ASN
32
n
35
ASN
32
A
LEU
33
n
36
LEU
33
A
ASP
34
n
37
ASP
34
A
ARG
35
n
38
ARG
35
A
THR
36
n
39
THR
36
A
TYR
37
n
40
TYR
37
A
ILE
38
n
41
ILE
38
A
SER
39
n
42
SER
39
A
GLY
40
n
43
GLY
40
A
ILE
41
n
44
ILE
41
A
GLU
42
n
45
GLU
42
A
ARG
43
n
46
ARG
43
A
ASN
44
n
47
ASN
44
A
SER
45
n
48
SER
45
A
ARG
46
n
49
ARG
46
A
ASN
47
n
50
ASN
47
A
LEU
48
n
51
LEU
48
A
THR
49
n
52
THR
49
A
ILE
50
n
53
ILE
50
A
LYS
51
n
54
LYS
51
A
SER
52
n
55
SER
52
A
LEU
53
n
56
LEU
53
A
GLU
54
n
57
GLU
54
A
LEU
55
n
58
LEU
55
A
ILE
56
n
59
ILE
56
A
MET
57
n
60
MET
57
A
LYS
58
n
61
LYS
58
A
GLY
59
n
62
GLY
59
A
LEU
60
n
63
LEU
60
A
GLU
61
n
64
GLU
61
A
VAL
62
n
65
VAL
62
A
SER
63
n
66
SER
63
A
ASP
64
n
67
ASP
64
A
VAL
65
n
68
VAL
65
A
VAL
66
n
69
VAL
66
A
PHE
67
n
70
PHE
67
A
PHE
68
n
71
PHE
68
A
GLU
69
n
72
GLU
69
A
MET
70
n
73
MET
70
A
LEU
71
n
74
LEU
71
A
ILE
72
n
75
ILE
72
A
LYS
73
n
76
LYS
73
A
GLU
74
n
77
GLU
74
A
ILE
75
n
78
ILE
75
A
LEU
76
n
79
LEU
76
A
n
80
77
A
n
81
78
A
n
82
79
A
n
1
-2
B
n
2
-1
B
n
3
0
B
n
4
1
B
GLU
2
n
5
GLU
2
B
SER
3
n
6
SER
3
B
PHE
4
n
7
PHE
4
B
LEU
5
n
8
LEU
5
B
LEU
6
n
9
LEU
6
B
SER
7
n
10
SER
7
B
LYS
8
n
11
LYS
8
B
VAL
9
n
12
VAL
9
B
SER
10
n
13
SER
10
B
PHE
11
n
14
PHE
11
B
VAL
12
n
15
VAL
12
B
ILE
13
n
16
ILE
13
B
LYS
14
n
17
LYS
14
B
LYS
15
n
18
LYS
15
B
ILE
16
n
19
ILE
16
B
ARG
17
n
20
ARG
17
B
LEU
18
n
21
LEU
18
B
GLU
19
n
22
GLU
19
B
LYS
20
n
23
LYS
20
B
GLY
21
n
24
GLY
21
B
MET
22
n
25
MET
22
B
THR
23
n
26
THR
23
B
GLN
24
n
27
GLN
24
B
GLU
25
n
28
GLU
25
B
ASP
26
n
29
ASP
26
B
LEU
27
n
30
LEU
27
B
ALA
28
n
31
ALA
28
B
TYR
29
n
32
TYR
29
B
LYS
30
n
33
LYS
30
B
SER
31
n
34
SER
31
B
ASN
32
n
35
ASN
32
B
LEU
33
n
36
LEU
33
B
ASP
34
n
37
ASP
34
B
ARG
35
n
38
ARG
35
B
THR
36
n
39
THR
36
B
TYR
37
n
40
TYR
37
B
ILE
38
n
41
ILE
38
B
SER
39
n
42
SER
39
B
GLY
40
n
43
GLY
40
B
ILE
41
n
44
ILE
41
B
GLU
42
n
45
GLU
42
B
ARG
43
n
46
ARG
43
B
ASN
44
n
47
ASN
44
B
SER
45
n
48
SER
45
B
ARG
46
n
49
ARG
46
B
ASN
47
n
50
ASN
47
B
LEU
48
n
51
LEU
48
B
THR
49
n
52
THR
49
B
ILE
50
n
53
ILE
50
B
LYS
51
n
54
LYS
51
B
SER
52
n
55
SER
52
B
LEU
53
n
56
LEU
53
B
GLU
54
n
57
GLU
54
B
LEU
55
n
58
LEU
55
B
ILE
56
n
59
ILE
56
B
MET
57
n
60
MET
57
B
LYS
58
n
61
LYS
58
B
GLY
59
n
62
GLY
59
B
LEU
60
n
63
LEU
60
B
GLU
61
n
64
GLU
61
B
VAL
62
n
65
VAL
62
B
SER
63
n
66
SER
63
B
ASP
64
n
67
ASP
64
B
VAL
65
n
68
VAL
65
B
VAL
66
n
69
VAL
66
B
PHE
67
n
70
PHE
67
B
PHE
68
n
71
PHE
68
B
GLU
69
n
72
GLU
69
B
MET
70
n
73
MET
70
B
LEU
71
n
74
LEU
71
B
ILE
72
n
75
ILE
72
B
LYS
73
n
76
LYS
73
B
GLU
74
n
77
GLU
74
B
ILE
75
n
78
ILE
75
B
LEU
76
n
79
LEU
76
B
LYS
77
n
80
LYS
77
B
n
81
78
B
n
82
79
B
DA
1
n
1
DA
1
C
DT
2
n
2
DT
2
C
DG
3
n
3
DG
3
C
DT
4
n
4
DT
4
C
DG
5
n
5
DG
5
C
DA
6
n
6
DA
6
C
DC
7
n
7
DC
7
C
DT
8
n
8
DT
8
C
DT
9
n
9
DT
9
C
DA
10
n
10
DA
10
C
DT
11
n
11
DT
11
C
DA
12
n
12
DA
12
C
DG
13
n
13
DG
13
C
DT
14
n
14
DT
14
C
DC
15
n
15
DC
15
C
DC
16
n
16
DC
16
C
DG
17
n
17
DG
17
C
DT
18
n
18
DT
18
C
DG
19
n
19
DG
19
C
DT
20
n
20
DT
20
C
DG
21
n
21
DG
21
C
DA
22
n
22
DA
22
C
DT
23
n
23
DT
23
C
DT
24
n
24
DT
24
C
DA
25
n
25
DA
25
C
DT
1
n
1
DT
1
D
DA
2
n
2
DA
2
D
DA
3
n
3
DA
3
D
DT
4
n
4
DT
4
D
DC
5
n
5
DC
5
D
DA
6
n
6
DA
6
D
DC
7
n
7
DC
7
D
DA
8
n
8
DA
8
D
DC
9
n
9
DC
9
D
DG
10
n
10
DG
10
D
DG
11
n
11
DG
11
D
DA
12
n
12
DA
12
D
DC
13
n
13
DC
13
D
DT
14
n
14
DT
14
D
DA
15
n
15
DA
15
D
DT
16
n
16
DT
16
D
DA
17
n
17
DA
17
D
DA
18
n
18
DA
18
D
DG
19
n
19
DG
19
D
DT
20
n
20
DT
20
D
DC
21
n
21
DC
21
D
DA
22
n
22
DA
22
D
DC
23
n
23
DC
23
D
DA
24
n
24
DA
24
D
DT
25
n
25
DT
25
D
n
1
-2
E
n
2
-1
E
n
3
0
E
n
4
1
E
GLU
2
n
5
GLU
2
E
SER
3
n
6
SER
3
E
PHE
4
n
7
PHE
4
E
LEU
5
n
8
LEU
5
E
LEU
6
n
9
LEU
6
E
SER
7
n
10
SER
7
E
LYS
8
n
11
LYS
8
E
VAL
9
n
12
VAL
9
E
SER
10
n
13
SER
10
E
PHE
11
n
14
PHE
11
E
VAL
12
n
15
VAL
12
E
ILE
13
n
16
ILE
13
E
LYS
14
n
17
LYS
14
E
LYS
15
n
18
LYS
15
E
ILE
16
n
19
ILE
16
E
ARG
17
n
20
ARG
17
E
LEU
18
n
21
LEU
18
E
GLU
19
n
22
GLU
19
E
LYS
20
n
23
LYS
20
E
GLY
21
n
24
GLY
21
E
MET
22
n
25
MET
22
E
THR
23
n
26
THR
23
E
GLN
24
n
27
GLN
24
E
GLU
25
n
28
GLU
25
E
ASP
26
n
29
ASP
26
E
LEU
27
n
30
LEU
27
E
ALA
28
n
31
ALA
28
E
TYR
29
n
32
TYR
29
E
LYS
30
n
33
LYS
30
E
SER
31
n
34
SER
31
E
ASN
32
n
35
ASN
32
E
LEU
33
n
36
LEU
33
E
ASP
34
n
37
ASP
34
E
ARG
35
n
38
ARG
35
E
THR
36
n
39
THR
36
E
TYR
37
n
40
TYR
37
E
ILE
38
n
41
ILE
38
E
SER
39
n
42
SER
39
E
GLY
40
n
43
GLY
40
E
ILE
41
n
44
ILE
41
E
GLU
42
n
45
GLU
42
E
ARG
43
n
46
ARG
43
E
ASN
44
n
47
ASN
44
E
SER
45
n
48
SER
45
E
ARG
46
n
49
ARG
46
E
ASN
47
n
50
ASN
47
E
LEU
48
n
51
LEU
48
E
THR
49
n
52
THR
49
E
ILE
50
n
53
ILE
50
E
LYS
51
n
54
LYS
51
E
SER
52
n
55
SER
52
E
LEU
53
n
56
LEU
53
E
GLU
54
n
57
GLU
54
E
LEU
55
n
58
LEU
55
E
ILE
56
n
59
ILE
56
E
MET
57
n
60
MET
57
E
LYS
58
n
61
LYS
58
E
GLY
59
n
62
GLY
59
E
LEU
60
n
63
LEU
60
E
GLU
61
n
64
GLU
61
E
VAL
62
n
65
VAL
62
E
SER
63
n
66
SER
63
E
ASP
64
n
67
ASP
64
E
VAL
65
n
68
VAL
65
E
VAL
66
n
69
VAL
66
E
PHE
67
n
70
PHE
67
E
PHE
68
n
71
PHE
68
E
GLU
69
n
72
GLU
69
E
MET
70
n
73
MET
70
E
LEU
71
n
74
LEU
71
E
ILE
72
n
75
ILE
72
E
LYS
73
n
76
LYS
73
E
GLU
74
n
77
GLU
74
E
ILE
75
n
78
ILE
75
E
LEU
76
n
79
LEU
76
E
n
80
77
E
n
81
78
E
n
82
79
E
n
1
-2
F
n
2
-1
F
n
3
0
F
n
4
1
F
GLU
2
n
5
GLU
2
F
SER
3
n
6
SER
3
F
PHE
4
n
7
PHE
4
F
LEU
5
n
8
LEU
5
F
LEU
6
n
9
LEU
6
F
SER
7
n
10
SER
7
F
LYS
8
n
11
LYS
8
F
VAL
9
n
12
VAL
9
F
SER
10
n
13
SER
10
F
PHE
11
n
14
PHE
11
F
VAL
12
n
15
VAL
12
F
ILE
13
n
16
ILE
13
F
LYS
14
n
17
LYS
14
F
LYS
15
n
18
LYS
15
F
ILE
16
n
19
ILE
16
F
ARG
17
n
20
ARG
17
F
LEU
18
n
21
LEU
18
F
GLU
19
n
22
GLU
19
F
LYS
20
n
23
LYS
20
F
GLY
21
n
24
GLY
21
F
MET
22
n
25
MET
22
F
THR
23
n
26
THR
23
F
GLN
24
n
27
GLN
24
F
GLU
25
n
28
GLU
25
F
ASP
26
n
29
ASP
26
F
LEU
27
n
30
LEU
27
F
ALA
28
n
31
ALA
28
F
TYR
29
n
32
TYR
29
F
LYS
30
n
33
LYS
30
F
SER
31
n
34
SER
31
F
ASN
32
n
35
ASN
32
F
LEU
33
n
36
LEU
33
F
ASP
34
n
37
ASP
34
F
ARG
35
n
38
ARG
35
F
THR
36
n
39
THR
36
F
TYR
37
n
40
TYR
37
F
ILE
38
n
41
ILE
38
F
SER
39
n
42
SER
39
F
GLY
40
n
43
GLY
40
F
ILE
41
n
44
ILE
41
F
GLU
42
n
45
GLU
42
F
ARG
43
n
46
ARG
43
F
ASN
44
n
47
ASN
44
F
SER
45
n
48
SER
45
F
ARG
46
n
49
ARG
46
F
ASN
47
n
50
ASN
47
F
LEU
48
n
51
LEU
48
F
THR
49
n
52
THR
49
F
ILE
50
n
53
ILE
50
F
LYS
51
n
54
LYS
51
F
SER
52
n
55
SER
52
F
LEU
53
n
56
LEU
53
F
GLU
54
n
57
GLU
54
F
LEU
55
n
58
LEU
55
F
ILE
56
n
59
ILE
56
F
MET
57
n
60
MET
57
F
LYS
58
n
61
LYS
58
F
GLY
59
n
62
GLY
59
F
LEU
60
n
63
LEU
60
F
GLU
61
n
64
GLU
61
F
VAL
62
n
65
VAL
62
F
SER
63
n
66
SER
63
F
ASP
64
n
67
ASP
64
F
VAL
65
n
68
VAL
65
F
VAL
66
n
69
VAL
66
F
PHE
67
n
70
PHE
67
F
PHE
68
n
71
PHE
68
F
GLU
69
n
72
GLU
69
F
MET
70
n
73
MET
70
F
LEU
71
n
74
LEU
71
F
ILE
72
n
75
ILE
72
F
LYS
73
n
76
LYS
73
F
GLU
74
n
77
GLU
74
F
ILE
75
n
78
ILE
75
F
LEU
76
n
79
LEU
76
F
LYS
77
n
80
LYS
77
F
n
81
78
F
n
82
79
F
DA
1
n
1
DA
1
G
DT
2
n
2
DT
2
G
DG
3
n
3
DG
3
G
DT
4
n
4
DT
4
G
DG
5
n
5
DG
5
G
DA
6
n
6
DA
6
G
DC
7
n
7
DC
7
G
DT
8
n
8
DT
8
G
DT
9
n
9
DT
9
G
DA
10
n
10
DA
10
G
DT
11
n
11
DT
11
G
DA
12
n
12
DA
12
G
DG
13
n
13
DG
13
G
DT
14
n
14
DT
14
G
DC
15
n
15
DC
15
G
DC
16
n
16
DC
16
G
DG
17
n
17
DG
17
G
DT
18
n
18
DT
18
G
DG
19
n
19
DG
19
G
DT
20
n
20
DT
20
G
DG
21
n
21
DG
21
G
DA
22
n
22
DA
22
G
DT
23
n
23
DT
23
G
DT
24
n
24
DT
24
G
DA
25
n
25
DA
25
G
DT
1
n
1
DT
1
H
DA
2
n
2
DA
2
H
DA
3
n
3
DA
3
H
DT
4
n
4
DT
4
H
DC
5
n
5
DC
5
H
DA
6
n
6
DA
6
H
DC
7
n
7
DC
7
H
DA
8
n
8
DA
8
H
DC
9
n
9
DC
9
H
DG
10
n
10
DG
10
H
DG
11
n
11
DG
11
H
DA
12
n
12
DA
12
H
DC
13
n
13
DC
13
H
DT
14
n
14
DT
14
H
DA
15
n
15
DA
15
H
DT
16
n
16
DT
16
H
DA
17
n
17
DA
17
H
DA
18
n
18
DA
18
H
DG
19
n
19
DG
19
H
DT
20
n
20
DT
20
H
DC
21
n
21
DC
21
H
DA
22
n
22
DA
22
H
DC
23
n
23
DC
23
H
DA
24
n
24
DA
24
H
DT
25
n
25
DT
25
H
4.9688
0.8298
2.4667
1.7584
0.0350
4.6303
-0.3263
-0.0440
-0.1648
0.2482
0.0059
-0.3237
-0.3841
0.4327
0.3203
0.2173
-0.0957
-0.0536
0.1124
0.0302
0.4980
refined
64.4910
4.9440
-16.3340
X-RAY DIFFRACTION
2.7108
-0.6685
1.8274
1.9125
-1.0387
3.8443
-0.5692
-0.0696
0.1511
0.1419
-0.0032
-0.2387
-0.6086
0.3252
0.5725
0.2133
-0.0863
-0.0395
0.1193
0.0467
0.4832
refined
64.0460
6.3440
-16.6580
X-RAY DIFFRACTION
5.8460
0.4521
2.3424
3.4961
-1.5255
2.8502
-0.0659
0.0464
-0.6496
-0.2915
0.1083
0.0922
0.5957
-0.4923
-0.0424
0.3295
-0.2686
0.0409
0.2325
-0.0646
0.6780
refined
47.0840
-9.0990
-25.3500
X-RAY DIFFRACTION
5.9695
1.8885
0.5696
3.5112
-0.2650
3.3226
-0.0879
-0.2757
-1.0138
0.2155
-0.2140
-0.0711
0.6185
0.5502
0.3019
0.2553
0.0971
0.0914
0.1168
0.1220
0.7334
refined
64.9980
-10.0750
-15.4330
X-RAY DIFFRACTION
2.4481
-1.5377
1.3694
5.4810
-2.2979
5.6791
-0.1017
0.4829
0.2351
0.0531
-0.2889
0.2900
-0.7324
0.1848
0.3906
0.2420
-0.0805
-0.0503
0.1360
0.0289
0.5370
refined
68.0570
2.8950
15.1740
X-RAY DIFFRACTION
3.1721
-1.0798
2.1648
2.3293
-1.4724
5.6882
-0.1729
0.3194
0.3780
0.1411
-0.4873
-0.0697
-0.7291
0.3077
0.6602
0.2267
-0.0919
-0.0515
0.1401
0.0053
0.5030
refined
69.5300
3.1970
15.4750
X-RAY DIFFRACTION
4.2259
-1.0345
1.8862
3.5806
-2.0407
4.8165
0.1848
-0.1133
-0.4552
0.1261
-0.1003
0.4384
1.1397
-0.5073
-0.0846
0.4730
-0.2161
0.0548
0.1003
-0.0137
0.6520
refined
64.5910
-19.2140
24.1850
X-RAY DIFFRACTION
2.1743
-0.6074
0.6052
8.9199
0.8733
6.9822
-0.1402
0.1597
-0.3148
-0.2566
-0.1789
1.0043
-0.1311
-1.2383
0.3191
0.0337
-0.0143
-0.0496
0.2889
-0.1085
0.7201
refined
54.8150
-4.1650
14.2590
X-RAY DIFFRACTION
C
1
C
25
X-RAY DIFFRACTION
1
D
1
D
25
X-RAY DIFFRACTION
2
A
2
A
76
X-RAY DIFFRACTION
3
B
2
B
77
X-RAY DIFFRACTION
4
G
1
G
25
X-RAY DIFFRACTION
5
H
1
H
25
X-RAY DIFFRACTION
6
E
2
E
76
X-RAY DIFFRACTION
7
F
2
F
77
X-RAY DIFFRACTION
8
author_and_software_defined_assembly
PISA
4
tetrameric
author_and_software_defined_assembly
PISA
4
tetrameric
7310
-44
14240
7320
-46
14340
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
GLY
-2
A
GLY
1
1
Y
1
A
SER
-1
A
SER
2
1
Y
1
A
HIS
0
A
HIS
3
1
Y
1
A
MET
1
A
MET
4
1
Y
1
A
LYS
77
A
LYS
80
1
Y
1
A
HIS
78
A
HIS
81
1
Y
1
A
ASP
79
A
ASP
82
1
Y
1
B
GLY
-2
B
GLY
1
1
Y
1
B
SER
-1
B
SER
2
1
Y
1
B
HIS
0
B
HIS
3
1
Y
1
B
MET
1
B
MET
4
1
Y
1
B
HIS
78
B
HIS
81
1
Y
1
B
ASP
79
B
ASP
82
1
Y
1
E
GLY
-2
E
GLY
1
1
Y
1
E
SER
-1
E
SER
2
1
Y
1
E
HIS
0
E
HIS
3
1
Y
1
E
MET
1
E
MET
4
1
Y
1
E
LYS
77
E
LYS
80
1
Y
1
E
HIS
78
E
HIS
81
1
Y
1
E
ASP
79
E
ASP
82
1
Y
1
F
GLY
-2
F
GLY
1
1
Y
1
F
SER
-1
F
SER
2
1
Y
1
F
HIS
0
F
HIS
3
1
Y
1
F
MET
1
F
MET
4
1
Y
1
F
HIS
78
F
HIS
81
1
Y
1
F
ASP
79
F
ASP
82
1
Y
1
-11.56
1.90
110.20
98.64
B
B
B
CB
CA
C
LEU
LEU
LEU
48
48
48
N
1
7.35
1.20
110.70
118.05
C
C
C
O5'
P
OP2
DA
DA
DA
1
1
1
N
1
13.66
2.00
112.30
125.96
D
D
D
C4'
C3'
O3'
DA
DA
DA
18
18
18
N
1
-7.03
1.00
110.10
103.07
D
D
D
C1'
O4'
C4'
DG
DG
DG
19
19
19
N
1
-4.93
0.80
102.40
97.47
G
G
G
C3'
C2'
C1'
DT
DT
DT
11
11
11
N
1
-8.96
0.90
105.70
96.74
H
H
H
O5'
P
OP2
DG
DG
DG
19
19
19
N
1
-6.50
1.00
110.10
103.60
H
H
H
C1'
O4'
C4'
DG
DG
DG
19
19
19
N
1
G
G
O3'
P
DA
DG
12
13
-0.079
0.012
1.607
1.528
Y
1
B
SER
45
66.62
-51.74
1
B
ARG
46
49.45
130.58
1
B
GLU
61
67.05
61.62
1
B
LEU
76
-64.47
57.42
1
F
ASN
32
39.11
53.31
1
F
SER
45
55.13
-37.70
1
F
ARG
46
42.31
127.35
1
F
GLU
61
75.69
63.19
1
F
LEU
76
-82.68
42.42
128.460
67.385
6.390
0.4200
0.4200
-0.0000
0.4200
0.0000
-1.3700
0.9540
0.9140
0.2599
0.1972
0.2002
2.4000
38.8600
1069
21045
21041
5.1000
95.8000
0.2534
0.1912
1.000
0.500
0.7826
26.2220
0.2740
0.7697
0.3069
RANDOM
1
THROUGHOUT
0.000
MOLECULAR REPLACEMENT
0.7700
0.3070
0.8000
0.8000
1.2000
pdb entry 3S8Q
MAXIMUM LIKELIHOOD
MASK
2.4000
38.8600
23
4531
0
2050
2458
0.011
0.015
4780
0.002
0.020
3727
1.522
1.583
6846
1.168
3.000
8686
5.816
5.000
300
36.805
24.455
101
18.365
15.000
557
19.325
15.000
16
0.092
0.200
699
0.008
0.020
3813
0.001
0.020
981
0.3740
0.2920
2.4620
62
1211
1273
20
82.4500
59.528
2.400
38.863
4IWR
21045
-3.000
0.048
1
13.490
95.600
0.542
2.400
2.500
1.460
4391
2134
1
85.400
0.399
2.500
2.600
2.240
4781
2041
1
94.400
0.270
2.600
2.800
3.450
8335
3343
1
97.000
0.183
2.800
3.000
5.240
6816
2536
1
97.200
0.073
3.000
3.400
12.520
10006
3440
1
97.700
0.052
3.400
3.600
20.120
3739
1187
1
97.600
0.047
3.600
3.800
22.790
3113
938
1
97.900
0.047
3.800
4.000
24.700
2917
824
1
97.700
0.038
4.000
5.000
29.060
8372
2238
1
97.700
0.033
5.000
6.000
30.880
4115
1028
1
97.100
0.031
6.000
7.000
30.680
1979
498
1
95.600
0.027
7.000
8.000
35.860
1129
283
1
95.000
0.025
8.000
10.000
37.610
1052
268
1
95.000
0.024
10.000
15.000
36.440
769
203
1
94.900
0.031
15.000
36.080
291
84
1
81.600
data scaling
Wolfgang Kabsch
http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html
XSCALE
package
phasing
Randy J. Read
cimr-phaser@lists.cam.ac.uk
Tue Jul 10 12:42:19 2012 (svn )
http://www-structmed.cimr.cam.ac.uk/phaser/
PHASER
program
2.5.1
refinement
Garib N. Murshudov
garib@ysbl.york.ac.uk
Fortran_77
http://www.ccp4.ac.uk/dist/html/refmac5.html
REFMAC
program
data extraction
PDB
deposit@deposit.rcsb.org
April 22, 2011
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.11
data collection
DNA
C.Esp1396I bound to a 25 base pair operator site
1
N
N
1
N
N
2
N
N
3
N
N
1
N
N
1
N
N
2
N
N
3
N
N
4
N
N
4
N
N
4
N
N
4
N
N
4
N
N
4
N
N
4
N
N
4
N
N
A
SER
3
A
SER
6
HELX_P
A
LYS
20
A
LYS
23
1
1
18
A
THR
23
A
THR
26
HELX_P
A
ASN
32
A
ASN
35
1
2
10
A
ASP
34
A
ASP
37
HELX_P
A
ARG
43
A
ARG
46
1
3
10
A
THR
49
A
THR
52
HELX_P
A
LEU
60
A
LEU
63
1
4
12
A
SER
63
A
SER
66
HELX_P
A
ILE
75
A
ILE
78
1
5
13
B
SER
3
B
SER
6
HELX_P
B
LYS
20
B
LYS
23
1
6
18
B
THR
23
B
THR
26
HELX_P
B
ASN
32
B
ASN
35
1
7
10
B
ASP
34
B
ASP
37
HELX_P
B
SER
45
B
SER
48
1
8
12
B
THR
49
B
THR
52
HELX_P
B
GLU
61
B
GLU
64
1
9
13
B
SER
63
B
SER
66
HELX_P
B
LEU
76
B
LEU
79
1
10
14
E
SER
3
E
SER
6
HELX_P
E
LYS
20
E
LYS
23
1
11
18
E
THR
23
E
THR
26
HELX_P
E
ASN
32
E
ASN
35
1
12
10
E
ASP
34
E
ASP
37
HELX_P
E
ARG
43
E
ARG
46
1
13
10
E
THR
49
E
THR
52
HELX_P
E
LEU
60
E
LEU
63
1
14
12
E
SER
63
E
SER
66
HELX_P
E
ILE
75
E
ILE
78
1
15
13
F
SER
3
F
SER
6
HELX_P
F
LYS
20
F
LYS
23
1
16
18
F
THR
23
F
THR
26
HELX_P
F
SER
31
F
SER
34
1
17
9
F
ASP
34
F
ASP
37
HELX_P
F
SER
45
F
SER
48
1
18
12
F
THR
49
F
THR
52
HELX_P
F
GLU
61
F
GLU
64
1
19
13
F
SER
63
F
SER
66
HELX_P
F
LEU
76
F
LEU
79
1
20
14
hydrog
WATSON-CRICK
C
DT
2
C
N3
DT
2
1_555
D
DA
24
D
N1
DA
24
1_555
hydrog
WATSON-CRICK
C
DT
2
C
O4
DT
2
1_555
D
DA
24
D
N6
DA
24
1_555
hydrog
WATSON-CRICK
C
DG
3
C
N1
DG
3
1_555
D
DC
23
D
N3
DC
23
1_555
hydrog
WATSON-CRICK
C
DG
3
C
N2
DG
3
1_555
D
DC
23
D
O2
DC
23
1_555
hydrog
WATSON-CRICK
C
DG
3
C
O6
DG
3
1_555
D
DC
23
D
N4
DC
23
1_555
hydrog
WATSON-CRICK
C
DT
4
C
N3
DT
4
1_555
D
DA
22
D
N1
DA
22
1_555
hydrog
WATSON-CRICK
C
DT
4
C
O4
DT
4
1_555
D
DA
22
D
N6
DA
22
1_555
hydrog
WATSON-CRICK
C
DG
5
C
N1
DG
5
1_555
D
DC
21
D
N3
DC
21
1_555
hydrog
WATSON-CRICK
C
DG
5
C
N2
DG
5
1_555
D
DC
21
D
O2
DC
21
1_555
hydrog
WATSON-CRICK
C
DG
5
C
O6
DG
5
1_555
D
DC
21
D
N4
DC
21
1_555
hydrog
WATSON-CRICK
C
DA
6
C
N1
DA
6
1_555
D
DT
20
D
N3
DT
20
1_555
hydrog
WATSON-CRICK
C
DA
6
C
N6
DA
6
1_555
D
DT
20
D
O4
DT
20
1_555
hydrog
WATSON-CRICK
C
DC
7
C
N3
DC
7
1_555
D
DG
19
D
N1
DG
19
1_555
hydrog
WATSON-CRICK
C
DC
7
C
N4
DC
7
1_555
D
DG
19
D
O6
DG
19
1_555
hydrog
WATSON-CRICK
C
DC
7
C
O2
DC
7
1_555
D
DG
19
D
N2
DG
19
1_555
hydrog
WATSON-CRICK
C
DT
8
C
N3
DT
8
1_555
D
DA
18
D
N1
DA
18
1_555
hydrog
WATSON-CRICK
C
DT
8
C
O4
DT
8
1_555
D
DA
18
D
N6
DA
18
1_555
hydrog
WATSON-CRICK
C
DT
9
C
N3
DT
9
1_555
D
DA
17
D
N1
DA
17
1_555
hydrog
WATSON-CRICK
C
DT
9
C
O4
DT
9
1_555
D
DA
17
D
N6
DA
17
1_555
hydrog
WATSON-CRICK
C
DA
10
C
N1
DA
10
1_555
D
DT
16
D
N3
DT
16
1_555
hydrog
WATSON-CRICK
C
DA
10
C
N6
DA
10
1_555
D
DT
16
D
O4
DT
16
1_555
hydrog
WATSON-CRICK
C
DT
11
C
N3
DT
11
1_555
D
DA
15
D
N1
DA
15
1_555
hydrog
WATSON-CRICK
C
DT
11
C
O4
DT
11
1_555
D
DA
15
D
N6
DA
15
1_555
hydrog
WATSON-CRICK
C
DA
12
C
N1
DA
12
1_555
D
DT
14
D
N3
DT
14
1_555
hydrog
WATSON-CRICK
C
DA
12
C
N6
DA
12
1_555
D
DT
14
D
O4
DT
14
1_555
hydrog
WATSON-CRICK
C
DG
13
C
N1
DG
13
1_555
D
DC
13
D
N3
DC
13
1_555
hydrog
WATSON-CRICK
C
DG
13
C
N2
DG
13
1_555
D
DC
13
D
O2
DC
13
1_555
hydrog
WATSON-CRICK
C
DG
13
C
O6
DG
13
1_555
D
DC
13
D
N4
DC
13
1_555
hydrog
WATSON-CRICK
C
DT
14
C
N3
DT
14
1_555
D
DA
12
D
N1
DA
12
1_555
hydrog
WATSON-CRICK
C
DT
14
C
O4
DT
14
1_555
D
DA
12
D
N6
DA
12
1_555
hydrog
WATSON-CRICK
C
DC
15
C
N3
DC
15
1_555
D
DG
11
D
N1
DG
11
1_555
hydrog
WATSON-CRICK
C
DC
15
C
N4
DC
15
1_555
D
DG
11
D
O6
DG
11
1_555
hydrog
WATSON-CRICK
C
DC
15
C
O2
DC
15
1_555
D
DG
11
D
N2
DG
11
1_555
hydrog
WATSON-CRICK
C
DC
16
C
N3
DC
16
1_555
D
DG
10
D
N1
DG
10
1_555
hydrog
WATSON-CRICK
C
DC
16
C
N4
DC
16
1_555
D
DG
10
D
O6
DG
10
1_555
hydrog
WATSON-CRICK
C
DC
16
C
O2
DC
16
1_555
D
DG
10
D
N2
DG
10
1_555
hydrog
WATSON-CRICK
C
DG
17
C
N1
DG
17
1_555
D
DC
9
D
N3
DC
9
1_555
hydrog
WATSON-CRICK
C
DG
17
C
N2
DG
17
1_555
D
DC
9
D
O2
DC
9
1_555
hydrog
WATSON-CRICK
C
DG
17
C
O6
DG
17
1_555
D
DC
9
D
N4
DC
9
1_555
hydrog
WATSON-CRICK
C
DT
18
C
N3
DT
18
1_555
D
DA
8
D
N1
DA
8
1_555
hydrog
WATSON-CRICK
C
DT
18
C
O4
DT
18
1_555
D
DA
8
D
N6
DA
8
1_555
hydrog
WATSON-CRICK
C
DG
19
C
N1
DG
19
1_555
D
DC
7
D
N3
DC
7
1_555
hydrog
WATSON-CRICK
C
DG
19
C
N2
DG
19
1_555
D
DC
7
D
O2
DC
7
1_555
hydrog
WATSON-CRICK
C
DG
19
C
O6
DG
19
1_555
D
DC
7
D
N4
DC
7
1_555
hydrog
WATSON-CRICK
C
DT
20
C
N3
DT
20
1_555
D
DA
6
D
N1
DA
6
1_555
hydrog
WATSON-CRICK
C
DT
20
C
O4
DT
20
1_555
D
DA
6
D
N6
DA
6
1_555
hydrog
WATSON-CRICK
C
DG
21
C
N1
DG
21
1_555
D
DC
5
D
N3
DC
5
1_555
hydrog
WATSON-CRICK
C
DG
21
C
N2
DG
21
1_555
D
DC
5
D
O2
DC
5
1_555
hydrog
WATSON-CRICK
C
DG
21
C
O6
DG
21
1_555
D
DC
5
D
N4
DC
5
1_555
hydrog
WATSON-CRICK
C
DA
22
C
N1
DA
22
1_555
D
DT
4
D
N3
DT
4
1_555
hydrog
WATSON-CRICK
C
DA
22
C
N6
DA
22
1_555
D
DT
4
D
O4
DT
4
1_555
hydrog
DT-DA PAIR
C
DT
23
C
N3
DT
23
1_555
D
DA
3
D
N1
DA
3
1_555
hydrog
WATSON-CRICK
C
DT
24
C
N3
DT
24
1_555
D
DA
2
D
N1
DA
2
1_555
hydrog
WATSON-CRICK
C
DT
24
C
O4
DT
24
1_555
D
DA
2
D
N6
DA
2
1_555
hydrog
DA-DT PAIR
G
DA
1
G
N3
DA
1
1_555
H
DT
25
H
N3
DT
25
1_555
hydrog
WATSON-CRICK
G
DT
2
G
N3
DT
2
1_555
H
DA
24
H
N1
DA
24
1_555
hydrog
WATSON-CRICK
G
DT
2
G
O4
DT
2
1_555
H
DA
24
H
N6
DA
24
1_555
hydrog
WATSON-CRICK
G
DG
3
G
N1
DG
3
1_555
H
DC
23
H
N3
DC
23
1_555
hydrog
WATSON-CRICK
G
DG
3
G
N2
DG
3
1_555
H
DC
23
H
O2
DC
23
1_555
hydrog
WATSON-CRICK
G
DG
3
G
O6
DG
3
1_555
H
DC
23
H
N4
DC
23
1_555
hydrog
WATSON-CRICK
G
DT
4
G
N3
DT
4
1_555
H
DA
22
H
N1
DA
22
1_555
hydrog
WATSON-CRICK
G
DT
4
G
O4
DT
4
1_555
H
DA
22
H
N6
DA
22
1_555
hydrog
WATSON-CRICK
G
DG
5
G
N1
DG
5
1_555
H
DC
21
H
N3
DC
21
1_555
hydrog
WATSON-CRICK
G
DG
5
G
N2
DG
5
1_555
H
DC
21
H
O2
DC
21
1_555
hydrog
WATSON-CRICK
G
DG
5
G
O6
DG
5
1_555
H
DC
21
H
N4
DC
21
1_555
hydrog
WATSON-CRICK
G
DA
6
G
N1
DA
6
1_555
H
DT
20
H
N3
DT
20
1_555
hydrog
WATSON-CRICK
G
DA
6
G
N6
DA
6
1_555
H
DT
20
H
O4
DT
20
1_555
hydrog
WATSON-CRICK
G
DC
7
G
N3
DC
7
1_555
H
DG
19
H
N1
DG
19
1_555
hydrog
WATSON-CRICK
G
DC
7
G
N4
DC
7
1_555
H
DG
19
H
O6
DG
19
1_555
hydrog
WATSON-CRICK
G
DC
7
G
O2
DC
7
1_555
H
DG
19
H
N2
DG
19
1_555
hydrog
WATSON-CRICK
G
DT
8
G
N3
DT
8
1_555
H
DA
18
H
N1
DA
18
1_555
hydrog
WATSON-CRICK
G
DT
8
G
O4
DT
8
1_555
H
DA
18
H
N6
DA
18
1_555
hydrog
WATSON-CRICK
G
DT
9
G
N3
DT
9
1_555
H
DA
17
H
N1
DA
17
1_555
hydrog
WATSON-CRICK
G
DT
9
G
O4
DT
9
1_555
H
DA
17
H
N6
DA
17
1_555
hydrog
WATSON-CRICK
G
DA
10
G
N1
DA
10
1_555
H
DT
16
H
N3
DT
16
1_555
hydrog
WATSON-CRICK
G
DA
10
G
N6
DA
10
1_555
H
DT
16
H
O4
DT
16
1_555
hydrog
WATSON-CRICK
G
DT
11
G
N3
DT
11
1_555
H
DA
15
H
N1
DA
15
1_555
hydrog
WATSON-CRICK
G
DT
11
G
O4
DT
11
1_555
H
DA
15
H
N6
DA
15
1_555
hydrog
WATSON-CRICK
G
DA
12
G
N1
DA
12
1_555
H
DT
14
H
N3
DT
14
1_555
hydrog
WATSON-CRICK
G
DA
12
G
N6
DA
12
1_555
H
DT
14
H
O4
DT
14
1_555
hydrog
WATSON-CRICK
G
DG
13
G
N1
DG
13
1_555
H
DC
13
H
N3
DC
13
1_555
hydrog
WATSON-CRICK
G
DG
13
G
N2
DG
13
1_555
H
DC
13
H
O2
DC
13
1_555
hydrog
WATSON-CRICK
G
DG
13
G
O6
DG
13
1_555
H
DC
13
H
N4
DC
13
1_555
hydrog
WATSON-CRICK
G
DT
14
G
N3
DT
14
1_555
H
DA
12
H
N1
DA
12
1_555
hydrog
WATSON-CRICK
G
DT
14
G
O4
DT
14
1_555
H
DA
12
H
N6
DA
12
1_555
hydrog
WATSON-CRICK
G
DC
15
G
N3
DC
15
1_555
H
DG
11
H
N1
DG
11
1_555
hydrog
WATSON-CRICK
G
DC
15
G
N4
DC
15
1_555
H
DG
11
H
O6
DG
11
1_555
hydrog
WATSON-CRICK
G
DC
15
G
O2
DC
15
1_555
H
DG
11
H
N2
DG
11
1_555
hydrog
WATSON-CRICK
G
DC
16
G
N3
DC
16
1_555
H
DG
10
H
N1
DG
10
1_555
hydrog
WATSON-CRICK
G
DC
16
G
N4
DC
16
1_555
H
DG
10
H
O6
DG
10
1_555
hydrog
WATSON-CRICK
G
DC
16
G
O2
DC
16
1_555
H
DG
10
H
N2
DG
10
1_555
hydrog
WATSON-CRICK
G
DG
17
G
N1
DG
17
1_555
H
DC
9
H
N3
DC
9
1_555
hydrog
WATSON-CRICK
G
DG
17
G
N2
DG
17
1_555
H
DC
9
H
O2
DC
9
1_555
hydrog
WATSON-CRICK
G
DG
17
G
O6
DG
17
1_555
H
DC
9
H
N4
DC
9
1_555
hydrog
WATSON-CRICK
G
DT
18
G
N3
DT
18
1_555
H
DA
8
H
N1
DA
8
1_555
hydrog
WATSON-CRICK
G
DT
18
G
O4
DT
18
1_555
H
DA
8
H
N6
DA
8
1_555
hydrog
WATSON-CRICK
G
DG
19
G
N1
DG
19
1_555
H
DC
7
H
N3
DC
7
1_555
hydrog
WATSON-CRICK
G
DG
19
G
N2
DG
19
1_555
H
DC
7
H
O2
DC
7
1_555
hydrog
WATSON-CRICK
G
DG
19
G
O6
DG
19
1_555
H
DC
7
H
N4
DC
7
1_555
hydrog
WATSON-CRICK
G
DT
20
G
N3
DT
20
1_555
H
DA
6
H
N1
DA
6
1_555
hydrog
WATSON-CRICK
G
DT
20
G
O4
DT
20
1_555
H
DA
6
H
N6
DA
6
1_555
hydrog
WATSON-CRICK
G
DG
21
G
N1
DG
21
1_555
H
DC
5
H
N3
DC
5
1_555
hydrog
WATSON-CRICK
G
DG
21
G
N2
DG
21
1_555
H
DC
5
H
O2
DC
5
1_555
hydrog
WATSON-CRICK
G
DG
21
G
O6
DG
21
1_555
H
DC
5
H
N4
DC
5
1_555
hydrog
WATSON-CRICK
G
DA
22
G
N1
DA
22
1_555
H
DT
4
H
N3
DT
4
1_555
hydrog
WATSON-CRICK
G
DA
22
G
N6
DA
22
1_555
H
DT
4
H
O4
DT
4
1_555
hydrog
WATSON-CRICK
G
DT
23
G
N3
DT
23
1_555
H
DA
3
H
N1
DA
3
1_555
hydrog
WATSON-CRICK
G
DT
23
G
O4
DT
23
1_555
H
DA
3
H
N6
DA
3
1_555
hydrog
WATSON-CRICK
G
DT
24
G
N3
DT
24
1_555
H
DA
2
H
N1
DA
2
1_555
hydrog
WATSON-CRICK
G
DT
24
G
O4
DT
24
1_555
H
DA
2
H
N6
DA
2
1_555
TRANSCRIPTION/DNA
Restriction-modification, helix-turn-helix, transcriptional regulation, DNA, TRANSCRIPTION-DNA complex
Q8GGH0_9ENTR
UNP
1
1
Q8GGH0
MESFLLSKVSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIERNSRNLTIKSLELIMKGLEVSDVVFFEMLIKEILKHD
4IWR
PDB
2
4IWR
4IWR
PDB
3
4IWR
1
79
4IWR
1
79
Q8GGH0
A
1
4
82
1
79
4IWR
1
79
Q8GGH0
B
1
4
82
1
79
4IWR
1
79
Q8GGH0
E
1
4
82
1
79
4IWR
1
79
Q8GGH0
F
1
4
82
1
25
4IWR
1
25
4IWR
C
2
1
25
1
25
4IWR
1
25
4IWR
G
2
1
25
1
25
4IWR
1
25
4IWR
D
3
1
25
1
25
4IWR
1
25
4IWR
H
3
1
25
1
expression tag
GLY
-2
4IWR
A
Q8GGH0
UNP
1
1
expression tag
SER
-1
4IWR
A
Q8GGH0
UNP
2
1
expression tag
HIS
0
4IWR
A
Q8GGH0
UNP
3
2
expression tag
GLY
-2
4IWR
B
Q8GGH0
UNP
1
2
expression tag
SER
-1
4IWR
B
Q8GGH0
UNP
2
2
expression tag
HIS
0
4IWR
B
Q8GGH0
UNP
3
3
expression tag
GLY
-2
4IWR
E
Q8GGH0
UNP
1
3
expression tag
SER
-1
4IWR
E
Q8GGH0
UNP
2
3
expression tag
HIS
0
4IWR
E
Q8GGH0
UNP
3
4
expression tag
GLY
-2
4IWR
F
Q8GGH0
UNP
1
4
expression tag
SER
-1
4IWR
F
Q8GGH0
UNP
2
4
expression tag
HIS
0
4IWR
F
Q8GGH0
UNP
3
145
P 32