0.017764
0.000000
0.004459
0.000000
0.014520
0.000000
0.000000
0.000000
0.013247
0.00000
0.00000
0.00000
Jost, M.
Ryan, K.S.
Turo, K.E.
Drennan, C.L.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
104.09
90.00
56.295
68.869
77.829
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
O4 S -2
96.063
SULFATE ION
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Zn 2
65.409
ZINC ION
non-polymer
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
S
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
N
N
251
S
C
N
252
N
C
N
253
N
O
N
254
N
C
Y
255
N
C
Y
256
N
C
Y
257
N
C
Y
258
N
C
Y
259
N
C
Y
260
N
C
N
261
N
O
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
N
N
274
S
C
N
275
N
C
N
276
N
O
N
277
N
C
N
278
N
C
N
279
N
C
N
280
N
O
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
N
N
291
S
C
N
292
N
C
N
293
N
O
N
294
N
C
N
295
N
O
N
296
N
O
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
S
N
305
N
O
N
306
N
O
N
307
N
O
N
308
N
O
N
309
N
N
N
310
S
C
N
311
N
C
N
312
N
O
N
313
R
C
N
314
N
O
N
315
N
C
N
316
N
O
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
N
N
327
S
C
N
328
N
C
N
329
N
O
N
330
N
C
Y
331
N
C
Y
332
N
C
Y
333
N
C
Y
334
N
N
Y
335
N
C
Y
336
N
C
Y
337
N
C
Y
338
N
C
Y
339
N
C
N
340
N
O
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
N
N
354
S
C
N
355
N
C
N
356
N
O
N
357
N
C
Y
358
N
C
Y
359
N
C
Y
360
N
C
Y
361
N
C
Y
362
N
C
Y
363
N
C
N
364
N
O
N
365
N
O
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
N
N
378
S
C
N
379
N
C
N
380
N
O
N
381
N
C
N
382
N
C
N
383
N
C
N
384
N
O
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
ZN
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
Y
248
N
doub
Y
249
N
sing
Y
250
N
sing
N
251
N
sing
Y
252
N
doub
N
253
N
sing
Y
254
N
doub
N
255
N
sing
Y
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
doub
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
doub
N
291
N
doub
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
doub
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
doub
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
Y
321
N
doub
Y
322
N
sing
Y
323
N
sing
N
324
N
sing
Y
325
N
doub
Y
326
N
sing
Y
327
N
sing
N
328
N
sing
Y
329
N
sing
Y
330
N
doub
N
331
N
sing
Y
332
N
doub
N
333
N
sing
Y
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
doub
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
Y
349
N
doub
Y
350
N
sing
Y
351
N
sing
N
352
N
sing
Y
353
N
doub
N
354
N
sing
Y
355
N
doub
N
356
N
sing
Y
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
doub
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
US
Biochemistry
BICHAW
0033
0006-2960
52
1788
1801
10.1021/bi301600z
24449932
Metal binding properties of Escherichia coli YjiA, a member of the metal homeostasis-associated COG0523 family of GTPases.
2013
10.2210/pdb4ixm/pdb
pdb_00004ixm
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2007-07-21
MARMOSAIC 325 mm CCD
Si(111) Double crystal monochromator
SINGLE WAVELENGTH
M
x-ray
1
1.1808
1.0
BL9-2
SSRL
1.1808
SYNCHROTRON
SSRL BEAMLINE BL9-2
35696.609
Uncharacterized GTP-binding protein YjiA
2
man
polymer
65.409
ZINC ION
5
syn
non-polymer
96.063
SULFATE ION
2
syn
non-polymer
18.015
water
43
nat
water
no
no
MNPIAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDL
LDNLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYADRILLTKT
DVAGEAEKLHERLARINARAPVYTVTHGDIDLGLLFNTNGFMLEENVVSTKPRFHFIADKQNDISSIVVELDYPVDISEV
SRVMENLLLESADKLLRYKGMLWIDGEPNRLLFQGVQRLYSADWDRPWGDEKPHSTMVFIGIQLPEEEIRAAFAGLRK
MNPIAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDL
LDNLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYADRILLTKT
DVAGEAEKLHERLARINARAPVYTVTHGDIDLGLLFNTNGFMLEENVVSTKPRFHFIADKQNDISSIVVELDYPVDISEV
SRVMENLLLESADKLLRYKGMLWIDGEPNRLLFQGVQRLYSADWDRPWGDEKPHSTMVFIGIQLPEEEIRAAFAGLRK
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
K-12
sample
b4352, JW5790, yjiA
83333
Escherichia coli
469008
Escherichia coli
BL21(DE3)
plasmid
pET24b
1
2.05
39.99
VAPOR DIFFUSION, HANGING DROP
6.9
1.5 uL of 13.2 mg/mL YjiA in 0.1 M NaCl, 25 mM HEPES, pH 7.6, mixed with 0.3 uL 0.1 M CaCl2 and 1.5 uL 1.55 M ammonium sulfate, 0.1 M , VAPOR DIFFUSION, HANGING DROP, temperature 298K
298
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
pdbx_struct_conn_angle
struct_conn
struct_site
repository
Initial release
Database references
Database references
Database references
Database references
Database references
Database references
Data collection
Database references
Derived calculations
Refinement description
1
0
2013-02-27
1
1
2013-03-20
1
2
2013-06-12
1
3
2013-07-03
1
4
2013-07-24
1
5
2014-01-01
1
6
2014-03-05
1
7
2023-09-20
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_asym_id
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr2_auth_asym_id
_pdbx_struct_conn_angle.ptnr2_auth_seq_id
_pdbx_struct_conn_angle.ptnr2_label_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
RCSB
2013-01-26
REL
REL
ZN
ZINC ION
SO4
SULFATE ION
HOH
water
1NIJ
PDB ENTRY 1NIJ
PDB
experimental model
ZN
4
2
ZN
ZN
401
A
ZN
1
2
ZN
ZN
402
A
ZN
2
2
ZN
ZN
403
A
ZN
3
2
ZN
ZN
404
A
SO4
1
3
SO4
SO4
405
A
ZN
5
2
ZN
ZN
401
B
SO4
2
3
SO4
SO4
402
B
HOH
1
4
HOH
HOH
501
A
HOH
3
4
HOH
HOH
502
A
HOH
9
4
HOH
HOH
503
A
HOH
10
4
HOH
HOH
504
A
HOH
11
4
HOH
HOH
505
A
HOH
13
4
HOH
HOH
506
A
HOH
14
4
HOH
HOH
507
A
HOH
17
4
HOH
HOH
508
A
HOH
19
4
HOH
HOH
509
A
HOH
21
4
HOH
HOH
510
A
HOH
25
4
HOH
HOH
511
A
HOH
26
4
HOH
HOH
512
A
HOH
27
4
HOH
HOH
513
A
HOH
28
4
HOH
HOH
514
A
HOH
29
4
HOH
HOH
515
A
HOH
30
4
HOH
HOH
516
A
HOH
32
4
HOH
HOH
517
A
HOH
34
4
HOH
HOH
518
A
HOH
35
4
HOH
HOH
519
A
HOH
37
4
HOH
HOH
520
A
HOH
38
4
HOH
HOH
521
A
HOH
40
4
HOH
HOH
522
A
HOH
41
4
HOH
HOH
523
A
HOH
42
4
HOH
HOH
524
A
HOH
43
4
HOH
HOH
525
A
HOH
2
4
HOH
HOH
501
B
HOH
4
4
HOH
HOH
502
B
HOH
5
4
HOH
HOH
503
B
HOH
6
4
HOH
HOH
504
B
HOH
7
4
HOH
HOH
505
B
HOH
8
4
HOH
HOH
506
B
HOH
12
4
HOH
HOH
507
B
HOH
15
4
HOH
HOH
508
B
HOH
16
4
HOH
HOH
509
B
HOH
18
4
HOH
HOH
510
B
HOH
20
4
HOH
HOH
511
B
HOH
22
4
HOH
HOH
512
B
HOH
23
4
HOH
HOH
513
B
HOH
24
4
HOH
HOH
514
B
HOH
31
4
HOH
HOH
515
B
HOH
33
4
HOH
HOH
516
B
HOH
36
4
HOH
HOH
517
B
HOH
39
4
HOH
HOH
518
B
MET
1
n
1
MET
1
A
ASN
2
n
2
ASN
2
A
PRO
3
n
3
PRO
3
A
ILE
4
n
4
ILE
4
A
ALA
5
n
5
ALA
5
A
VAL
6
n
6
VAL
6
A
THR
7
n
7
THR
7
A
LEU
8
n
8
LEU
8
A
LEU
9
n
9
LEU
9
A
THR
10
n
10
THR
10
A
GLY
11
n
11
GLY
11
A
PHE
12
n
12
PHE
12
A
LEU
13
n
13
LEU
13
A
GLY
14
n
14
GLY
14
A
ALA
15
n
15
ALA
15
A
GLY
16
n
16
GLY
16
A
LYS
17
n
17
LYS
17
A
THR
18
n
18
THR
18
A
THR
19
n
19
THR
19
A
LEU
20
n
20
LEU
20
A
LEU
21
n
21
LEU
21
A
ARG
22
n
22
ARG
22
A
HIS
23
n
23
HIS
23
A
ILE
24
n
24
ILE
24
A
LEU
25
n
25
LEU
25
A
ASN
26
n
26
ASN
26
A
GLU
27
n
27
GLU
27
A
GLN
28
n
28
GLN
28
A
HIS
29
n
29
HIS
29
A
GLY
30
n
30
GLY
30
A
TYR
31
n
31
TYR
31
A
LYS
32
n
32
LYS
32
A
ILE
33
n
33
ILE
33
A
ALA
34
n
34
ALA
34
A
VAL
35
n
35
VAL
35
A
ILE
36
n
36
ILE
36
A
GLU
37
n
37
GLU
37
A
ASN
38
n
38
ASN
38
A
GLU
39
n
39
GLU
39
A
PHE
40
n
40
PHE
40
A
GLY
41
n
41
GLY
41
A
GLU
42
n
42
GLU
42
A
VAL
43
n
43
VAL
43
A
SER
44
n
44
SER
44
A
VAL
45
n
45
VAL
45
A
ASP
46
n
46
ASP
46
A
ASP
47
n
47
ASP
47
A
GLN
48
n
48
GLN
48
A
LEU
49
n
49
LEU
49
A
ILE
50
n
50
ILE
50
A
GLY
51
n
51
GLY
51
A
ASP
52
n
52
ASP
52
A
ARG
53
n
53
ARG
53
A
ALA
54
n
54
ALA
54
A
THR
55
n
55
THR
55
A
GLN
56
n
56
GLN
56
A
ILE
57
n
57
ILE
57
A
LYS
58
n
58
LYS
58
A
THR
59
n
59
THR
59
A
LEU
60
n
60
LEU
60
A
THR
61
n
61
THR
61
A
ASN
62
n
62
ASN
62
A
GLY
63
n
63
GLY
63
A
CYS
64
n
64
CYS
64
A
ILE
65
n
65
ILE
65
A
CYS
66
n
66
CYS
66
A
CYS
67
n
67
CYS
67
A
SER
68
n
68
SER
68
A
ARG
69
n
69
ARG
69
A
SER
70
n
70
SER
70
A
ASN
71
n
71
ASN
71
A
GLU
72
n
72
GLU
72
A
LEU
73
n
73
LEU
73
A
GLU
74
n
74
GLU
74
A
ASP
75
n
75
ASP
75
A
ALA
76
n
76
ALA
76
A
LEU
77
n
77
LEU
77
A
LEU
78
n
78
LEU
78
A
ASP
79
n
79
ASP
79
A
LEU
80
n
80
LEU
80
A
LEU
81
n
81
LEU
81
A
ASP
82
n
82
ASP
82
A
ASN
83
n
83
ASN
83
A
LEU
84
n
84
LEU
84
A
ASP
85
n
85
ASP
85
A
LYS
86
n
86
LYS
86
A
GLY
87
n
87
GLY
87
A
ASN
88
n
88
ASN
88
A
ILE
89
n
89
ILE
89
A
GLN
90
n
90
GLN
90
A
PHE
91
n
91
PHE
91
A
ASP
92
n
92
ASP
92
A
ARG
93
n
93
ARG
93
A
LEU
94
n
94
LEU
94
A
VAL
95
n
95
VAL
95
A
ILE
96
n
96
ILE
96
A
GLU
97
n
97
GLU
97
A
CYS
98
n
98
CYS
98
A
THR
99
n
99
THR
99
A
GLY
100
n
100
GLY
100
A
MET
101
n
101
MET
101
A
ALA
102
n
102
ALA
102
A
ASP
103
n
103
ASP
103
A
PRO
104
n
104
PRO
104
A
GLY
105
n
105
GLY
105
A
PRO
106
n
106
PRO
106
A
ILE
107
n
107
ILE
107
A
ILE
108
n
108
ILE
108
A
GLN
109
n
109
GLN
109
A
THR
110
n
110
THR
110
A
PHE
111
n
111
PHE
111
A
PHE
112
n
112
PHE
112
A
SER
113
n
113
SER
113
A
HIS
114
n
114
HIS
114
A
GLU
115
n
115
GLU
115
A
VAL
116
n
116
VAL
116
A
LEU
117
n
117
LEU
117
A
CYS
118
n
118
CYS
118
A
GLN
119
n
119
GLN
119
A
ARG
120
n
120
ARG
120
A
TYR
121
n
121
TYR
121
A
LEU
122
n
122
LEU
122
A
LEU
123
n
123
LEU
123
A
ASP
124
n
124
ASP
124
A
GLY
125
n
125
GLY
125
A
VAL
126
n
126
VAL
126
A
ILE
127
n
127
ILE
127
A
ALA
128
n
128
ALA
128
A
LEU
129
n
129
LEU
129
A
VAL
130
n
130
VAL
130
A
ASP
131
n
131
ASP
131
A
ALA
132
n
132
ALA
132
A
VAL
133
n
133
VAL
133
A
HIS
134
n
134
HIS
134
A
ALA
135
n
135
ALA
135
A
ASP
136
n
136
ASP
136
A
GLU
137
n
137
GLU
137
A
GLN
138
n
138
GLN
138
A
MET
139
n
139
MET
139
A
ASN
140
n
140
ASN
140
A
GLN
141
n
141
GLN
141
A
PHE
142
n
142
PHE
142
A
THR
143
n
143
THR
143
A
ILE
144
n
144
ILE
144
A
ALA
145
n
145
ALA
145
A
GLN
146
n
146
GLN
146
A
SER
147
n
147
SER
147
A
GLN
148
n
148
GLN
148
A
VAL
149
n
149
VAL
149
A
GLY
150
n
150
GLY
150
A
TYR
151
n
151
TYR
151
A
ALA
152
n
152
ALA
152
A
ASP
153
n
153
ASP
153
A
ARG
154
n
154
ARG
154
A
ILE
155
n
155
ILE
155
A
LEU
156
n
156
LEU
156
A
LEU
157
n
157
LEU
157
A
THR
158
n
158
THR
158
A
LYS
159
n
159
LYS
159
A
THR
160
n
160
THR
160
A
ASP
161
n
161
ASP
161
A
VAL
162
n
162
VAL
162
A
ALA
163
n
163
ALA
163
A
GLY
164
n
164
GLY
164
A
GLU
165
n
165
GLU
165
A
ALA
166
n
166
ALA
166
A
GLU
167
n
167
GLU
167
A
LYS
168
n
168
LYS
168
A
LEU
169
n
169
LEU
169
A
HIS
170
n
170
HIS
170
A
GLU
171
n
171
GLU
171
A
ARG
172
n
172
ARG
172
A
LEU
173
n
173
LEU
173
A
ALA
174
n
174
ALA
174
A
ARG
175
n
175
ARG
175
A
ILE
176
n
176
ILE
176
A
ASN
177
n
177
ASN
177
A
ALA
178
n
178
ALA
178
A
ARG
179
n
179
ARG
179
A
ALA
180
n
180
ALA
180
A
PRO
181
n
181
PRO
181
A
VAL
182
n
182
VAL
182
A
TYR
183
n
183
TYR
183
A
THR
184
n
184
THR
184
A
VAL
185
n
185
VAL
185
A
THR
186
n
186
THR
186
A
HIS
187
n
187
HIS
187
A
GLY
188
n
188
GLY
188
A
ASP
189
n
189
ASP
189
A
ILE
190
n
190
ILE
190
A
ASP
191
n
191
ASP
191
A
LEU
192
n
192
LEU
192
A
GLY
193
n
193
GLY
193
A
LEU
194
n
194
LEU
194
A
LEU
195
n
195
LEU
195
A
PHE
196
n
196
PHE
196
A
ASN
197
n
197
ASN
197
A
THR
198
n
198
THR
198
A
ASN
199
n
199
ASN
199
A
GLY
200
n
200
GLY
200
A
PHE
201
n
201
PHE
201
A
MET
202
n
202
MET
202
A
LEU
203
n
203
LEU
203
A
GLU
204
n
204
GLU
204
A
GLU
205
n
205
GLU
205
A
ASN
206
n
206
ASN
206
A
VAL
207
n
207
VAL
207
A
VAL
208
n
208
VAL
208
A
SER
209
n
209
SER
209
A
THR
210
n
210
THR
210
A
LYS
211
n
211
LYS
211
A
PRO
212
n
212
PRO
212
A
ARG
213
n
213
ARG
213
A
PHE
214
n
214
PHE
214
A
HIS
215
n
215
HIS
215
A
PHE
216
n
216
PHE
216
A
ILE
217
n
217
ILE
217
A
ALA
218
n
218
ALA
218
A
ASP
219
n
219
ASP
219
A
LYS
220
n
220
LYS
220
A
GLN
221
n
221
GLN
221
A
ASN
222
n
222
ASN
222
A
ASP
223
n
223
ASP
223
A
ILE
224
n
224
ILE
224
A
SER
225
n
225
SER
225
A
SER
226
n
226
SER
226
A
ILE
227
n
227
ILE
227
A
VAL
228
n
228
VAL
228
A
VAL
229
n
229
VAL
229
A
GLU
230
n
230
GLU
230
A
LEU
231
n
231
LEU
231
A
ASP
232
n
232
ASP
232
A
TYR
233
n
233
TYR
233
A
PRO
234
n
234
PRO
234
A
VAL
235
n
235
VAL
235
A
ASP
236
n
236
ASP
236
A
ILE
237
n
237
ILE
237
A
SER
238
n
238
SER
238
A
GLU
239
n
239
GLU
239
A
VAL
240
n
240
VAL
240
A
SER
241
n
241
SER
241
A
ARG
242
n
242
ARG
242
A
VAL
243
n
243
VAL
243
A
MET
244
n
244
MET
244
A
GLU
245
n
245
GLU
245
A
ASN
246
n
246
ASN
246
A
LEU
247
n
247
LEU
247
A
LEU
248
n
248
LEU
248
A
LEU
249
n
249
LEU
249
A
GLU
250
n
250
GLU
250
A
SER
251
n
251
SER
251
A
ALA
252
n
252
ALA
252
A
ASP
253
n
253
ASP
253
A
LYS
254
n
254
LYS
254
A
LEU
255
n
255
LEU
255
A
LEU
256
n
256
LEU
256
A
ARG
257
n
257
ARG
257
A
TYR
258
n
258
TYR
258
A
LYS
259
n
259
LYS
259
A
GLY
260
n
260
GLY
260
A
MET
261
n
261
MET
261
A
LEU
262
n
262
LEU
262
A
TRP
263
n
263
TRP
263
A
ILE
264
n
264
ILE
264
A
ASP
265
n
265
ASP
265
A
GLY
266
n
266
GLY
266
A
GLU
267
n
267
GLU
267
A
PRO
268
n
268
PRO
268
A
ASN
269
n
269
ASN
269
A
ARG
270
n
270
ARG
270
A
LEU
271
n
271
LEU
271
A
LEU
272
n
272
LEU
272
A
PHE
273
n
273
PHE
273
A
GLN
274
n
274
GLN
274
A
GLY
275
n
275
GLY
275
A
VAL
276
n
276
VAL
276
A
GLN
277
n
277
GLN
277
A
ARG
278
n
278
ARG
278
A
LEU
279
n
279
LEU
279
A
TYR
280
n
280
TYR
280
A
SER
281
n
281
SER
281
A
ALA
282
n
282
ALA
282
A
ASP
283
n
283
ASP
283
A
TRP
284
n
284
TRP
284
A
ASP
285
n
285
ASP
285
A
ARG
286
n
286
ARG
286
A
PRO
287
n
287
PRO
287
A
TRP
288
n
288
TRP
288
A
GLY
289
n
289
GLY
289
A
ASP
290
n
290
ASP
290
A
GLU
291
n
291
GLU
291
A
LYS
292
n
292
LYS
292
A
PRO
293
n
293
PRO
293
A
HIS
294
n
294
HIS
294
A
SER
295
n
295
SER
295
A
THR
296
n
296
THR
296
A
MET
297
n
297
MET
297
A
VAL
298
n
298
VAL
298
A
PHE
299
n
299
PHE
299
A
ILE
300
n
300
ILE
300
A
GLY
301
n
301
GLY
301
A
ILE
302
n
302
ILE
302
A
GLN
303
n
303
GLN
303
A
LEU
304
n
304
LEU
304
A
PRO
305
n
305
PRO
305
A
GLU
306
n
306
GLU
306
A
GLU
307
n
307
GLU
307
A
GLU
308
n
308
GLU
308
A
ILE
309
n
309
ILE
309
A
ARG
310
n
310
ARG
310
A
ALA
311
n
311
ALA
311
A
ALA
312
n
312
ALA
312
A
PHE
313
n
313
PHE
313
A
ALA
314
n
314
ALA
314
A
GLY
315
n
315
GLY
315
A
LEU
316
n
316
LEU
316
A
ARG
317
n
317
ARG
317
A
LYS
318
n
318
LYS
318
A
n
1
1
B
ASN
2
n
2
ASN
2
B
PRO
3
n
3
PRO
3
B
ILE
4
n
4
ILE
4
B
ALA
5
n
5
ALA
5
B
VAL
6
n
6
VAL
6
B
THR
7
n
7
THR
7
B
LEU
8
n
8
LEU
8
B
LEU
9
n
9
LEU
9
B
THR
10
n
10
THR
10
B
GLY
11
n
11
GLY
11
B
PHE
12
n
12
PHE
12
B
LEU
13
n
13
LEU
13
B
GLY
14
n
14
GLY
14
B
ALA
15
n
15
ALA
15
B
GLY
16
n
16
GLY
16
B
LYS
17
n
17
LYS
17
B
THR
18
n
18
THR
18
B
THR
19
n
19
THR
19
B
LEU
20
n
20
LEU
20
B
LEU
21
n
21
LEU
21
B
ARG
22
n
22
ARG
22
B
HIS
23
n
23
HIS
23
B
ILE
24
n
24
ILE
24
B
LEU
25
n
25
LEU
25
B
ASN
26
n
26
ASN
26
B
GLU
27
n
27
GLU
27
B
GLN
28
n
28
GLN
28
B
HIS
29
n
29
HIS
29
B
GLY
30
n
30
GLY
30
B
TYR
31
n
31
TYR
31
B
LYS
32
n
32
LYS
32
B
ILE
33
n
33
ILE
33
B
ALA
34
n
34
ALA
34
B
VAL
35
n
35
VAL
35
B
ILE
36
n
36
ILE
36
B
GLU
37
n
37
GLU
37
B
ASN
38
n
38
ASN
38
B
GLU
39
n
39
GLU
39
B
PHE
40
n
40
PHE
40
B
GLY
41
n
41
GLY
41
B
GLU
42
n
42
GLU
42
B
VAL
43
n
43
VAL
43
B
SER
44
n
44
SER
44
B
VAL
45
n
45
VAL
45
B
ASP
46
n
46
ASP
46
B
ASP
47
n
47
ASP
47
B
GLN
48
n
48
GLN
48
B
LEU
49
n
49
LEU
49
B
ILE
50
n
50
ILE
50
B
GLY
51
n
51
GLY
51
B
ASP
52
n
52
ASP
52
B
ARG
53
n
53
ARG
53
B
ALA
54
n
54
ALA
54
B
THR
55
n
55
THR
55
B
GLN
56
n
56
GLN
56
B
ILE
57
n
57
ILE
57
B
LYS
58
n
58
LYS
58
B
THR
59
n
59
THR
59
B
LEU
60
n
60
LEU
60
B
THR
61
n
61
THR
61
B
ASN
62
n
62
ASN
62
B
GLY
63
n
63
GLY
63
B
CYS
64
n
64
CYS
64
B
ILE
65
n
65
ILE
65
B
CYS
66
n
66
CYS
66
B
CYS
67
n
67
CYS
67
B
SER
68
n
68
SER
68
B
ARG
69
n
69
ARG
69
B
SER
70
n
70
SER
70
B
ASN
71
n
71
ASN
71
B
GLU
72
n
72
GLU
72
B
LEU
73
n
73
LEU
73
B
GLU
74
n
74
GLU
74
B
ASP
75
n
75
ASP
75
B
ALA
76
n
76
ALA
76
B
LEU
77
n
77
LEU
77
B
LEU
78
n
78
LEU
78
B
ASP
79
n
79
ASP
79
B
LEU
80
n
80
LEU
80
B
LEU
81
n
81
LEU
81
B
ASP
82
n
82
ASP
82
B
ASN
83
n
83
ASN
83
B
LEU
84
n
84
LEU
84
B
ASP
85
n
85
ASP
85
B
LYS
86
n
86
LYS
86
B
GLY
87
n
87
GLY
87
B
ASN
88
n
88
ASN
88
B
ILE
89
n
89
ILE
89
B
GLN
90
n
90
GLN
90
B
PHE
91
n
91
PHE
91
B
ASP
92
n
92
ASP
92
B
ARG
93
n
93
ARG
93
B
LEU
94
n
94
LEU
94
B
VAL
95
n
95
VAL
95
B
ILE
96
n
96
ILE
96
B
GLU
97
n
97
GLU
97
B
CYS
98
n
98
CYS
98
B
THR
99
n
99
THR
99
B
GLY
100
n
100
GLY
100
B
MET
101
n
101
MET
101
B
ALA
102
n
102
ALA
102
B
ASP
103
n
103
ASP
103
B
PRO
104
n
104
PRO
104
B
GLY
105
n
105
GLY
105
B
PRO
106
n
106
PRO
106
B
ILE
107
n
107
ILE
107
B
ILE
108
n
108
ILE
108
B
GLN
109
n
109
GLN
109
B
THR
110
n
110
THR
110
B
PHE
111
n
111
PHE
111
B
PHE
112
n
112
PHE
112
B
SER
113
n
113
SER
113
B
HIS
114
n
114
HIS
114
B
GLU
115
n
115
GLU
115
B
VAL
116
n
116
VAL
116
B
LEU
117
n
117
LEU
117
B
CYS
118
n
118
CYS
118
B
GLN
119
n
119
GLN
119
B
ARG
120
n
120
ARG
120
B
TYR
121
n
121
TYR
121
B
LEU
122
n
122
LEU
122
B
LEU
123
n
123
LEU
123
B
ASP
124
n
124
ASP
124
B
GLY
125
n
125
GLY
125
B
VAL
126
n
126
VAL
126
B
ILE
127
n
127
ILE
127
B
ALA
128
n
128
ALA
128
B
LEU
129
n
129
LEU
129
B
VAL
130
n
130
VAL
130
B
ASP
131
n
131
ASP
131
B
ALA
132
n
132
ALA
132
B
VAL
133
n
133
VAL
133
B
HIS
134
n
134
HIS
134
B
ALA
135
n
135
ALA
135
B
ASP
136
n
136
ASP
136
B
GLU
137
n
137
GLU
137
B
GLN
138
n
138
GLN
138
B
MET
139
n
139
MET
139
B
ASN
140
n
140
ASN
140
B
GLN
141
n
141
GLN
141
B
PHE
142
n
142
PHE
142
B
THR
143
n
143
THR
143
B
ILE
144
n
144
ILE
144
B
ALA
145
n
145
ALA
145
B
GLN
146
n
146
GLN
146
B
SER
147
n
147
SER
147
B
GLN
148
n
148
GLN
148
B
VAL
149
n
149
VAL
149
B
GLY
150
n
150
GLY
150
B
TYR
151
n
151
TYR
151
B
ALA
152
n
152
ALA
152
B
ASP
153
n
153
ASP
153
B
ARG
154
n
154
ARG
154
B
ILE
155
n
155
ILE
155
B
LEU
156
n
156
LEU
156
B
LEU
157
n
157
LEU
157
B
THR
158
n
158
THR
158
B
LYS
159
n
159
LYS
159
B
THR
160
n
160
THR
160
B
ASP
161
n
161
ASP
161
B
VAL
162
n
162
VAL
162
B
ALA
163
n
163
ALA
163
B
GLY
164
n
164
GLY
164
B
GLU
165
n
165
GLU
165
B
ALA
166
n
166
ALA
166
B
GLU
167
n
167
GLU
167
B
LYS
168
n
168
LYS
168
B
LEU
169
n
169
LEU
169
B
HIS
170
n
170
HIS
170
B
GLU
171
n
171
GLU
171
B
ARG
172
n
172
ARG
172
B
LEU
173
n
173
LEU
173
B
ALA
174
n
174
ALA
174
B
ARG
175
n
175
ARG
175
B
ILE
176
n
176
ILE
176
B
ASN
177
n
177
ASN
177
B
ALA
178
n
178
ALA
178
B
ARG
179
n
179
ARG
179
B
ALA
180
n
180
ALA
180
B
PRO
181
n
181
PRO
181
B
VAL
182
n
182
VAL
182
B
TYR
183
n
183
TYR
183
B
THR
184
n
184
THR
184
B
VAL
185
n
185
VAL
185
B
THR
186
n
186
THR
186
B
HIS
187
n
187
HIS
187
B
GLY
188
n
188
GLY
188
B
ASP
189
n
189
ASP
189
B
ILE
190
n
190
ILE
190
B
ASP
191
n
191
ASP
191
B
LEU
192
n
192
LEU
192
B
GLY
193
n
193
GLY
193
B
LEU
194
n
194
LEU
194
B
LEU
195
n
195
LEU
195
B
PHE
196
n
196
PHE
196
B
ASN
197
n
197
ASN
197
B
THR
198
n
198
THR
198
B
ASN
199
n
199
ASN
199
B
GLY
200
n
200
GLY
200
B
PHE
201
n
201
PHE
201
B
MET
202
n
202
MET
202
B
LEU
203
n
203
LEU
203
B
GLU
204
n
204
GLU
204
B
GLU
205
n
205
GLU
205
B
ASN
206
n
206
ASN
206
B
VAL
207
n
207
VAL
207
B
VAL
208
n
208
VAL
208
B
SER
209
n
209
SER
209
B
THR
210
n
210
THR
210
B
LYS
211
n
211
LYS
211
B
PRO
212
n
212
PRO
212
B
ARG
213
n
213
ARG
213
B
PHE
214
n
214
PHE
214
B
HIS
215
n
215
HIS
215
B
PHE
216
n
216
PHE
216
B
ILE
217
n
217
ILE
217
B
ALA
218
n
218
ALA
218
B
ASP
219
n
219
ASP
219
B
LYS
220
n
220
LYS
220
B
GLN
221
n
221
GLN
221
B
ASN
222
n
222
ASN
222
B
ASP
223
n
223
ASP
223
B
ILE
224
n
224
ILE
224
B
SER
225
n
225
SER
225
B
SER
226
n
226
SER
226
B
ILE
227
n
227
ILE
227
B
VAL
228
n
228
VAL
228
B
VAL
229
n
229
VAL
229
B
GLU
230
n
230
GLU
230
B
LEU
231
n
231
LEU
231
B
ASP
232
n
232
ASP
232
B
TYR
233
n
233
TYR
233
B
PRO
234
n
234
PRO
234
B
VAL
235
n
235
VAL
235
B
ASP
236
n
236
ASP
236
B
ILE
237
n
237
ILE
237
B
SER
238
n
238
SER
238
B
GLU
239
n
239
GLU
239
B
VAL
240
n
240
VAL
240
B
SER
241
n
241
SER
241
B
ARG
242
n
242
ARG
242
B
VAL
243
n
243
VAL
243
B
MET
244
n
244
MET
244
B
GLU
245
n
245
GLU
245
B
ASN
246
n
246
ASN
246
B
LEU
247
n
247
LEU
247
B
LEU
248
n
248
LEU
248
B
LEU
249
n
249
LEU
249
B
GLU
250
n
250
GLU
250
B
SER
251
n
251
SER
251
B
ALA
252
n
252
ALA
252
B
ASP
253
n
253
ASP
253
B
LYS
254
n
254
LYS
254
B
LEU
255
n
255
LEU
255
B
LEU
256
n
256
LEU
256
B
ARG
257
n
257
ARG
257
B
TYR
258
n
258
TYR
258
B
LYS
259
n
259
LYS
259
B
GLY
260
n
260
GLY
260
B
MET
261
n
261
MET
261
B
LEU
262
n
262
LEU
262
B
TRP
263
n
263
TRP
263
B
ILE
264
n
264
ILE
264
B
ASP
265
n
265
ASP
265
B
GLY
266
n
266
GLY
266
B
GLU
267
n
267
GLU
267
B
PRO
268
n
268
PRO
268
B
ASN
269
n
269
ASN
269
B
ARG
270
n
270
ARG
270
B
LEU
271
n
271
LEU
271
B
LEU
272
n
272
LEU
272
B
PHE
273
n
273
PHE
273
B
GLN
274
n
274
GLN
274
B
GLY
275
n
275
GLY
275
B
VAL
276
n
276
VAL
276
B
GLN
277
n
277
GLN
277
B
ARG
278
n
278
ARG
278
B
LEU
279
n
279
LEU
279
B
TYR
280
n
280
TYR
280
B
SER
281
n
281
SER
281
B
ALA
282
n
282
ALA
282
B
ASP
283
n
283
ASP
283
B
TRP
284
n
284
TRP
284
B
ASP
285
n
285
ASP
285
B
ARG
286
n
286
ARG
286
B
PRO
287
n
287
PRO
287
B
TRP
288
n
288
TRP
288
B
GLY
289
n
289
GLY
289
B
ASP
290
n
290
ASP
290
B
GLU
291
n
291
GLU
291
B
LYS
292
n
292
LYS
292
B
PRO
293
n
293
PRO
293
B
HIS
294
n
294
HIS
294
B
SER
295
n
295
SER
295
B
THR
296
n
296
THR
296
B
MET
297
n
297
MET
297
B
VAL
298
n
298
VAL
298
B
PHE
299
n
299
PHE
299
B
ILE
300
n
300
ILE
300
B
GLY
301
n
301
GLY
301
B
ILE
302
n
302
ILE
302
B
GLN
303
n
303
GLN
303
B
LEU
304
n
304
LEU
304
B
PRO
305
n
305
PRO
305
B
GLU
306
n
306
GLU
306
B
GLU
307
n
307
GLU
307
B
GLU
308
n
308
GLU
308
B
ILE
309
n
309
ILE
309
B
ARG
310
n
310
ARG
310
B
ALA
311
n
311
ALA
311
B
ALA
312
n
312
ALA
312
B
PHE
313
n
313
PHE
313
B
ALA
314
n
314
ALA
314
B
GLY
315
n
315
GLY
315
B
LEU
316
n
316
LEU
316
B
ARG
317
n
317
ARG
317
B
LYS
318
n
318
LYS
318
B
4.5381
-0.0797
0.0975
4.9885
-1.0961
7.1765
-0.0526
-0.7947
-0.3977
0.4164
0.0349
0.0629
0.5118
-0.4562
-0.0023
0.5622
-0.0422
-0.0585
0.6050
0.0624
0.5662
refined
23.1311
7.2908
28.3948
X-RAY DIFFRACTION
2.3068
-0.3440
0.3019
2.1133
0.4019
3.8992
-0.0113
0.0367
0.1854
-0.1652
0.0340
0.0133
-0.0010
-0.2514
-0.0293
0.3799
0.0014
-0.0184
0.3353
0.0282
0.4908
refined
23.3408
21.9747
6.1057
X-RAY DIFFRACTION
4.2042
0.6877
-1.4905
3.5619
0.9026
5.9511
-0.1004
0.4130
-0.2666
-0.1313
-0.0165
-0.0332
0.3694
0.3517
0.1277
0.5149
0.0738
-0.0585
0.5265
-0.0382
0.5225
refined
50.7374
6.2702
9.5549
X-RAY DIFFRACTION
1.6559
0.5899
-0.0477
2.4144
0.6900
6.2327
-0.0270
0.0213
0.1528
0.3967
0.0340
-0.0252
0.3123
0.2385
-0.0156
0.4449
-0.0084
-0.0370
0.4215
-0.0117
0.5222
refined
51.3599
21.4206
31.5234
X-RAY DIFFRACTION
X-RAY DIFFRACTION
1
(chain 'A' and resseq 1:123)
X-RAY DIFFRACTION
2
(chain 'A' and resseq 124:318)
X-RAY DIFFRACTION
3
(chain 'B' and resseq 2:123)
X-RAY DIFFRACTION
4
(chain 'B' and resseq 124:318)
software_defined_assembly
PISA
2
dimeric
software_defined_assembly
PISA
2
dimeric
2990
-178
27410
3400
-173
26910
A
GLU
37
A
OE1
GLU
37
1_555
A
ZN
401
C
ZN
ZN
1_555
A
GLU
42
A
OE2
GLU
42
1_555
112.4
A
GLU
37
A
OE1
GLU
37
1_555
A
ZN
401
C
ZN
ZN
1_555
A
CYS
66
A
SG
CYS
66
1_555
107.3
A
GLU
42
A
OE2
GLU
42
1_555
A
ZN
401
C
ZN
ZN
1_555
A
CYS
66
A
SG
CYS
66
1_555
98.7
A
GLU
74
A
OE1
GLU
74
1_555
A
ZN
402
D
ZN
ZN
1_555
A
GLU
74
A
OE2
GLU
74
1_555
53.4
A
GLU
74
A
OE1
GLU
74
1_555
A
ZN
402
D
ZN
ZN
1_555
A
HIS
114
A
NE2
HIS
114
1_555
103.7
A
GLU
74
A
OE2
GLU
74
1_555
A
ZN
402
D
ZN
ZN
1_555
A
HIS
114
A
NE2
HIS
114
1_555
86.6
A
GLU
74
A
OE1
GLU
74
1_555
A
ZN
402
D
ZN
ZN
1_555
B
GLU
74
B
OE1
GLU
74
1_555
104.8
A
GLU
74
A
OE2
GLU
74
1_555
A
ZN
402
D
ZN
ZN
1_555
B
GLU
74
B
OE1
GLU
74
1_555
138.3
A
HIS
114
A
NE2
HIS
114
1_555
A
ZN
402
D
ZN
ZN
1_555
B
GLU
74
B
OE1
GLU
74
1_555
135.2
A
GLU
74
A
OE1
GLU
74
1_555
A
ZN
402
D
ZN
ZN
1_555
B
GLU
74
B
OE2
GLU
74
1_555
136.8
A
GLU
74
A
OE2
GLU
74
1_555
A
ZN
402
D
ZN
ZN
1_555
B
GLU
74
B
OE2
GLU
74
1_555
166.4
A
HIS
114
A
NE2
HIS
114
1_555
A
ZN
402
D
ZN
ZN
1_555
B
GLU
74
B
OE2
GLU
74
1_555
81.9
B
GLU
74
B
OE1
GLU
74
1_555
A
ZN
402
D
ZN
ZN
1_555
B
GLU
74
B
OE2
GLU
74
1_555
53.7
A
GLU
74
A
OE1
GLU
74
1_555
A
ZN
402
D
ZN
ZN
1_555
B
HIS
114
B
NE2
HIS
114
1_555
143.0
A
GLU
74
A
OE2
GLU
74
1_555
A
ZN
402
D
ZN
ZN
1_555
B
HIS
114
B
NE2
HIS
114
1_555
103.2
A
HIS
114
A
NE2
HIS
114
1_555
A
ZN
402
D
ZN
ZN
1_555
B
HIS
114
B
NE2
HIS
114
1_555
102.5
B
GLU
74
B
OE1
GLU
74
1_555
A
ZN
402
D
ZN
ZN
1_555
B
HIS
114
B
NE2
HIS
114
1_555
72.8
B
GLU
74
B
OE2
GLU
74
1_555
A
ZN
402
D
ZN
ZN
1_555
B
HIS
114
B
NE2
HIS
114
1_555
72.5
B
GLU
37
B
OE1
GLU
37
1_555
B
ZN
401
H
ZN
ZN
1_555
B
GLU
42
B
OE2
GLU
42
1_555
115.8
B
GLU
37
B
OE1
GLU
37
1_555
B
ZN
401
H
ZN
ZN
1_555
B
CYS
66
B
SG
CYS
66
1_555
108.8
B
GLU
42
B
OE2
GLU
42
1_555
B
ZN
401
H
ZN
ZN
1_555
B
CYS
66
B
SG
CYS
66
1_555
98.8
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_455
x-1,y,z
crystal symmetry operation
-56.2950000000
0.0000000000
0.0000000000
A
N
LEU
49
A
N
LEU
49
A
O
ILE
57
A
O
ILE
57
A
N
LYS
58
A
N
LYS
58
A
O
CYS
66
A
O
CYS
66
A
O
CYS
67
A
O
CYS
67
A
N
VAL
35
A
N
VAL
35
A
N
ALA
34
A
N
ALA
34
A
O
ARG
93
A
O
ARG
93
A
O
LEU
94
A
O
LEU
94
A
N
THR
7
A
N
THR
7
A
N
LEU
8
A
N
LEU
8
A
O
ILE
127
A
O
ILE
127
A
N
VAL
130
A
N
VAL
130
A
O
THR
158
A
O
THR
158
A
N
ILE
155
A
N
ILE
155
A
O
TYR
183
A
O
TYR
183
A
N
VAL
229
A
N
VAL
229
A
O
MET
297
A
O
MET
297
A
O
VAL
298
A
O
VAL
298
A
N
LYS
259
A
N
LYS
259
A
N
LEU
262
A
N
LEU
262
A
O
LEU
271
A
O
LEU
271
A
N
VAL
276
A
N
VAL
276
A
O
LEU
279
A
O
LEU
279
B
N
LEU
49
B
N
LEU
49
B
O
ILE
57
B
O
ILE
57
B
N
LYS
58
B
N
LYS
58
B
O
CYS
66
B
O
CYS
66
B
O
CYS
67
B
O
CYS
67
B
N
VAL
35
B
N
VAL
35
B
N
ILE
36
B
N
ILE
36
B
O
GLU
97
B
O
GLU
97
B
O
LEU
94
B
O
LEU
94
B
N
THR
7
B
N
THR
7
B
N
VAL
6
B
N
VAL
6
B
O
ASP
124
B
O
ASP
124
B
N
VAL
130
B
N
VAL
130
B
O
LEU
156
B
O
LEU
156
B
N
LEU
157
B
N
LEU
157
B
O
TYR
183
B
O
TYR
183
B
N
LEU
231
B
N
LEU
231
B
O
SER
295
B
O
SER
295
B
O
VAL
298
B
O
VAL
298
B
N
LYS
259
B
N
LYS
259
B
N
LEU
262
B
N
LEU
262
B
O
LEU
271
B
O
LEU
271
B
N
VAL
276
B
N
VAL
276
B
O
LEU
279
B
O
LEU
279
1
A
CG
LEU
13
A
CG
LEU
13
1
Y
1
A
CD1
LEU
13
A
CD1
LEU
13
1
Y
1
A
CD2
LEU
13
A
CD2
LEU
13
1
Y
1
A
CG
GLN
28
A
CG
GLN
28
1
Y
1
A
CD
GLN
28
A
CD
GLN
28
1
Y
1
A
OE1
GLN
28
A
OE1
GLN
28
1
Y
1
A
NE2
GLN
28
A
NE2
GLN
28
1
Y
1
A
CE
LYS
32
A
CE
LYS
32
1
Y
1
A
NZ
LYS
32
A
NZ
LYS
32
1
Y
1
A
CG
GLU
39
A
CG
GLU
39
1
Y
1
A
CD
GLU
39
A
CD
GLU
39
1
Y
1
A
OE1
GLU
39
A
OE1
GLU
39
1
Y
1
A
OE2
GLU
39
A
OE2
GLU
39
1
Y
1
A
CG1
VAL
43
A
CG1
VAL
43
1
Y
1
A
CG2
VAL
43
A
CG2
VAL
43
1
Y
1
A
CE
LYS
86
A
CE
LYS
86
1
Y
1
A
NZ
LYS
86
A
NZ
LYS
86
1
Y
1
A
CG
GLU
115
A
CG
GLU
115
1
Y
1
A
CD
GLU
115
A
CD
GLU
115
1
Y
1
A
OE1
GLU
115
A
OE1
GLU
115
1
Y
1
A
OE2
GLU
115
A
OE2
GLU
115
1
Y
1
A
CG
GLU
137
A
CG
GLU
137
1
Y
1
A
CD
GLU
137
A
CD
GLU
137
1
Y
1
A
OE1
GLU
137
A
OE1
GLU
137
1
Y
1
A
OE2
GLU
137
A
OE2
GLU
137
1
Y
1
A
CG
GLN
141
A
CG
GLN
141
1
Y
1
A
CD
GLN
141
A
CD
GLN
141
1
Y
1
A
OE1
GLN
141
A
OE1
GLN
141
1
Y
1
A
NE2
GLN
141
A
NE2
GLN
141
1
Y
1
A
CG1
VAL
162
A
CG1
VAL
162
1
Y
1
A
CG2
VAL
162
A
CG2
VAL
162
1
Y
1
A
CG
GLU
165
A
CG
GLU
165
1
Y
1
A
CD
GLU
165
A
CD
GLU
165
1
Y
1
A
OE1
GLU
165
A
OE1
GLU
165
1
Y
1
A
OE2
GLU
165
A
OE2
GLU
165
1
Y
1
A
CG
LYS
168
A
CG
LYS
168
1
Y
1
A
CD
LYS
168
A
CD
LYS
168
1
Y
1
A
CE
LYS
168
A
CE
LYS
168
1
Y
1
A
NZ
LYS
168
A
NZ
LYS
168
1
Y
1
A
CG
ARG
213
A
CG
ARG
213
1
Y
1
A
CD
ARG
213
A
CD
ARG
213
1
Y
1
A
NE
ARG
213
A
NE
ARG
213
1
Y
1
A
CZ
ARG
213
A
CZ
ARG
213
1
Y
1
A
NH1
ARG
213
A
NH1
ARG
213
1
Y
1
A
NH2
ARG
213
A
NH2
ARG
213
1
Y
1
A
CG
PHE
214
A
CG
PHE
214
1
Y
1
A
CD1
PHE
214
A
CD1
PHE
214
1
Y
1
A
CD2
PHE
214
A
CD2
PHE
214
1
Y
1
A
CE1
PHE
214
A
CE1
PHE
214
1
Y
1
A
CE2
PHE
214
A
CE2
PHE
214
1
Y
1
A
CZ
PHE
214
A
CZ
PHE
214
1
Y
1
A
CG
PHE
216
A
CG
PHE
216
1
Y
1
A
CD1
PHE
216
A
CD1
PHE
216
1
Y
1
A
CD2
PHE
216
A
CD2
PHE
216
1
Y
1
A
CE1
PHE
216
A
CE1
PHE
216
1
Y
1
A
CE2
PHE
216
A
CE2
PHE
216
1
Y
1
A
CZ
PHE
216
A
CZ
PHE
216
1
Y
1
A
CG
ASP
219
A
CG
ASP
219
1
Y
1
A
OD1
ASP
219
A
OD1
ASP
219
1
Y
1
A
OD2
ASP
219
A
OD2
ASP
219
1
Y
1
A
CD
LYS
220
A
CD
LYS
220
1
Y
1
A
CE
LYS
220
A
CE
LYS
220
1
Y
1
A
NZ
LYS
220
A
NZ
LYS
220
1
Y
1
A
CG
ARG
242
A
CG
ARG
242
1
Y
1
A
CD
ARG
242
A
CD
ARG
242
1
Y
1
A
NE
ARG
242
A
NE
ARG
242
1
Y
1
A
CZ
ARG
242
A
CZ
ARG
242
1
Y
1
A
NH1
ARG
242
A
NH1
ARG
242
1
Y
1
A
NH2
ARG
242
A
NH2
ARG
242
1
Y
1
A
CG
ASP
290
A
CG
ASP
290
1
Y
1
A
OD1
ASP
290
A
OD1
ASP
290
1
Y
1
A
OD2
ASP
290
A
OD2
ASP
290
1
Y
1
A
CD
GLU
291
A
CD
GLU
291
1
Y
1
A
OE1
GLU
291
A
OE1
GLU
291
1
Y
1
A
OE2
GLU
291
A
OE2
GLU
291
1
Y
1
A
CD
LYS
292
A
CD
LYS
292
1
Y
1
A
CE
LYS
292
A
CE
LYS
292
1
Y
1
A
NZ
LYS
292
A
NZ
LYS
292
1
Y
1
A
CG
LYS
318
A
CG
LYS
318
1
Y
1
A
CD
LYS
318
A
CD
LYS
318
1
Y
1
A
CE
LYS
318
A
CE
LYS
318
1
Y
1
A
NZ
LYS
318
A
NZ
LYS
318
1
Y
1
B
CG
LEU
13
B
CG
LEU
13
1
Y
1
B
CD1
LEU
13
B
CD1
LEU
13
1
Y
1
B
CD2
LEU
13
B
CD2
LEU
13
1
Y
1
B
CG
LYS
32
B
CG
LYS
32
1
Y
1
B
CD
LYS
32
B
CD
LYS
32
1
Y
1
B
CE
LYS
32
B
CE
LYS
32
1
Y
1
B
NZ
LYS
32
B
NZ
LYS
32
1
Y
1
B
CG
GLU
39
B
CG
GLU
39
1
Y
1
B
CD
GLU
39
B
CD
GLU
39
1
Y
1
B
OE1
GLU
39
B
OE1
GLU
39
1
Y
1
B
OE2
GLU
39
B
OE2
GLU
39
1
Y
1
B
CG1
VAL
43
B
CG1
VAL
43
1
Y
1
B
CG2
VAL
43
B
CG2
VAL
43
1
Y
1
B
CG
ASP
47
B
CG
ASP
47
1
Y
1
B
OD1
ASP
47
B
OD1
ASP
47
1
Y
1
B
OD2
ASP
47
B
OD2
ASP
47
1
Y
1
B
CD
GLN
90
B
CD
GLN
90
1
Y
1
B
OE1
GLN
90
B
OE1
GLN
90
1
Y
1
B
NE2
GLN
90
B
NE2
GLN
90
1
Y
1
B
CG
GLU
115
B
CG
GLU
115
1
Y
1
B
CD
GLU
115
B
CD
GLU
115
1
Y
1
B
OE1
GLU
115
B
OE1
GLU
115
1
Y
1
B
OE2
GLU
115
B
OE2
GLU
115
1
Y
1
B
CG
GLU
137
B
CG
GLU
137
1
Y
1
B
CD
GLU
137
B
CD
GLU
137
1
Y
1
B
OE1
GLU
137
B
OE1
GLU
137
1
Y
1
B
OE2
GLU
137
B
OE2
GLU
137
1
Y
1
B
CG
ASP
161
B
CG
ASP
161
1
Y
1
B
OD1
ASP
161
B
OD1
ASP
161
1
Y
1
B
OD2
ASP
161
B
OD2
ASP
161
1
Y
1
B
CG
GLU
165
B
CG
GLU
165
1
Y
1
B
CD
GLU
165
B
CD
GLU
165
1
Y
1
B
OE1
GLU
165
B
OE1
GLU
165
1
Y
1
B
OE2
GLU
165
B
OE2
GLU
165
1
Y
1
B
CD
LYS
168
B
CD
LYS
168
1
Y
1
B
CE
LYS
168
B
CE
LYS
168
1
Y
1
B
NZ
LYS
168
B
NZ
LYS
168
1
Y
1
B
CG
HIS
170
B
CG
HIS
170
1
Y
1
B
ND1
HIS
170
B
ND1
HIS
170
1
Y
1
B
CD2
HIS
170
B
CD2
HIS
170
1
Y
1
B
CE1
HIS
170
B
CE1
HIS
170
1
Y
1
B
NE2
HIS
170
B
NE2
HIS
170
1
Y
1
B
CG
GLU
171
B
CG
GLU
171
1
Y
1
B
CD
GLU
171
B
CD
GLU
171
1
Y
1
B
OE1
GLU
171
B
OE1
GLU
171
1
Y
1
B
OE2
GLU
171
B
OE2
GLU
171
1
Y
1
B
CG
ASN
206
B
CG
ASN
206
1
Y
1
B
OD1
ASN
206
B
OD1
ASN
206
1
Y
1
B
ND2
ASN
206
B
ND2
ASN
206
1
Y
1
B
CG
LYS
211
B
CG
LYS
211
1
Y
1
B
CD
LYS
211
B
CD
LYS
211
1
Y
1
B
CE
LYS
211
B
CE
LYS
211
1
Y
1
B
NZ
LYS
211
B
NZ
LYS
211
1
Y
1
B
CG
ARG
213
B
CG
ARG
213
1
Y
1
B
CD
ARG
213
B
CD
ARG
213
1
Y
1
B
NE
ARG
213
B
NE
ARG
213
1
Y
1
B
CZ
ARG
213
B
CZ
ARG
213
1
Y
1
B
NH1
ARG
213
B
NH1
ARG
213
1
Y
1
B
NH2
ARG
213
B
NH2
ARG
213
1
Y
1
B
CG
PHE
214
B
CG
PHE
214
1
Y
1
B
CD1
PHE
214
B
CD1
PHE
214
1
Y
1
B
CD2
PHE
214
B
CD2
PHE
214
1
Y
1
B
CE1
PHE
214
B
CE1
PHE
214
1
Y
1
B
CE2
PHE
214
B
CE2
PHE
214
1
Y
1
B
CZ
PHE
214
B
CZ
PHE
214
1
Y
1
B
CG
PHE
216
B
CG
PHE
216
1
Y
1
B
CD1
PHE
216
B
CD1
PHE
216
1
Y
1
B
CD2
PHE
216
B
CD2
PHE
216
1
Y
1
B
CE1
PHE
216
B
CE1
PHE
216
1
Y
1
B
CE2
PHE
216
B
CE2
PHE
216
1
Y
1
B
CZ
PHE
216
B
CZ
PHE
216
1
Y
1
B
CG1
ILE
217
B
CG1
ILE
217
1
Y
1
B
CG2
ILE
217
B
CG2
ILE
217
1
Y
1
B
CD1
ILE
217
B
CD1
ILE
217
1
Y
1
B
CG
ASP
219
B
CG
ASP
219
1
Y
1
B
OD1
ASP
219
B
OD1
ASP
219
1
Y
1
B
OD2
ASP
219
B
OD2
ASP
219
1
Y
1
B
CD
LYS
220
B
CD
LYS
220
1
Y
1
B
CE
LYS
220
B
CE
LYS
220
1
Y
1
B
NZ
LYS
220
B
NZ
LYS
220
1
Y
1
B
CG
GLU
239
B
CG
GLU
239
1
Y
1
B
CD
GLU
239
B
CD
GLU
239
1
Y
1
B
OE1
GLU
239
B
OE1
GLU
239
1
Y
1
B
OE2
GLU
239
B
OE2
GLU
239
1
Y
1
B
CG
ARG
242
B
CG
ARG
242
1
Y
1
B
CD
ARG
242
B
CD
ARG
242
1
Y
1
B
NE
ARG
242
B
NE
ARG
242
1
Y
1
B
CZ
ARG
242
B
CZ
ARG
242
1
Y
1
B
NH1
ARG
242
B
NH1
ARG
242
1
Y
1
B
NH2
ARG
242
B
NH2
ARG
242
1
Y
1
B
CG
ASP
290
B
CG
ASP
290
1
Y
1
B
OD1
ASP
290
B
OD1
ASP
290
1
Y
1
B
OD2
ASP
290
B
OD2
ASP
290
1
Y
1
B
CG
GLU
291
B
CG
GLU
291
1
Y
1
B
CD
GLU
291
B
CD
GLU
291
1
Y
1
B
OE1
GLU
291
B
OE1
GLU
291
1
Y
1
B
OE2
GLU
291
B
OE2
GLU
291
1
Y
1
B
CE
LYS
292
B
CE
LYS
292
1
Y
1
B
NZ
LYS
292
B
NZ
LYS
292
1
Y
1
B
CG
LYS
318
B
CG
LYS
318
1
Y
1
B
CD
LYS
318
B
CD
LYS
318
1
Y
1
B
CE
LYS
318
B
CE
LYS
318
1
Y
1
B
NZ
LYS
318
B
NZ
LYS
318
1
Y
1
B
MET
1
B
MET
1
1
Y
1
A
ASN
26
-107.72
-60.38
1
A
GLU
39
-97.50
-139.50
1
A
PHE
40
-159.19
81.67
1
A
SER
70
-90.58
-158.75
1
A
GLU
165
-68.63
77.65
1
A
ALA
166
-94.81
43.88
1
A
GLN
277
54.19
-117.79
1
A
ASP
285
-150.69
-145.61
1
B
LEU
13
-58.89
101.65
1
B
GLU
39
-97.40
-139.30
1
B
SER
44
-151.93
81.53
1
B
ASP
46
-75.96
-71.95
1
B
SER
70
-90.81
-159.02
1
B
ASP
124
-90.86
-66.51
1
B
GLU
165
-60.13
94.11
1
B
GLN
277
54.11
-117.83
1
B
ASP
285
-150.67
-143.79
71.69
pseudo-translational symmetry. anomalous differences used in refinement.
0.2623
0.2199
0.2221
2.570
29.126
940
35283
35283
5.13
97.46
0.35
random
1
Isotropic with TLS
THROUGHOUT
1.36
MOLECULAR REPLACEMENT
30.67
1.00
1.20
PDB ENTRY 1NIJ
ML
FLAT BULK SOLVENT MODEL
2.570
29.126
43
4879
15
0
4821
0.002
4922
0.560
6684
9.790
1752
0.039
789
0.002
874
0.3748
0.3142
2.6395
176
2619
100.00
0.3002
0.2796
2.7171
152
2614
100.00
0.3238
0.2689
2.8047
128
2674
100.00
0.3134
0.2748
2.9049
103
2639
100.00
0.2971
0.2626
3.0211
129
2670
100.00
0.3299
0.2630
3.1584
124
2659
100.00
0.3111
0.2456
3.3247
138
2613
100.00
0.2219
0.2329
3.5327
155
2638
100.00
0.3045
0.2437
3.8049
106
1836
70.00
0.2608
0.2008
4.1868
158
2603
100.00
0.2252
0.1606
4.7903
129
2656
100.00
0.2280
0.1966
6.0265
175
2619
100.00
0.2220
0.1956
29.1280
131
2544
97.00
2.57
30.0
4IXM
35529
35529
-3
0.079
1
18.3
3.8
97.0
2.57
2.61
3.3
1535
0.412
1
3.6
84.6
data collection
Blu-Ice
phasing
PHASER
refinement
PHENIX
(phenix.refine: 1.8.1_1168)
data reduction
HKL-2000
data scaling
SCALEPACK
Crystal structure of Zn(II)-bound YjiA GTPase from E. coli
1
N
N
1
N
N
2
N
N
2
N
N
2
N
N
2
N
N
3
N
N
2
N
N
3
N
N
4
N
N
4
N
N
CRYSTAL STRUCTURE LIKELY CONTAINS A DIMER, BUT ZN(II)-BOUND PROTEIN OLIGOMERIZES IN SOLUTION, AS INDICATED BY SIZE EXCLUSION CHROMATOGRAPHY
A
GLY
14
A
GLY
14
HELX_P
A
ASN
26
A
ASN
26
1
1
13
A
GLU
72
A
GLU
72
HELX_P
A
LYS
86
A
LYS
86
1
2
15
A
ASP
103
A
ASP
103
HELX_P
A
PHE
111
A
PHE
111
1
3
9
A
HIS
114
A
HIS
114
HELX_P
A
ARG
120
A
ARG
120
1
4
7
A
HIS
134
A
HIS
134
HELX_P
A
PHE
142
A
PHE
142
1
5
9
A
PHE
142
A
PHE
142
HELX_P
A
TYR
151
A
TYR
151
1
6
10
A
LYS
159
A
LYS
159
HELX_P
A
GLY
164
A
GLY
164
1
7
6
A
ALA
166
A
ALA
166
HELX_P
A
ASN
177
A
ASN
177
1
8
12
A
ASP
191
A
ASP
191
HELX_P
A
PHE
196
A
PHE
196
5
9
6
A
ILE
217
A
ILE
217
HELX_P
A
GLN
221
A
GLN
221
5
10
5
A
ASP
236
A
ASP
236
HELX_P
A
SER
251
A
SER
251
1
11
16
A
PRO
305
A
PRO
305
HELX_P
A
GLY
315
A
GLY
315
1
12
11
B
ALA
15
B
ALA
15
HELX_P
B
GLU
27
B
GLU
27
1
13
13
B
GLU
72
B
GLU
72
HELX_P
B
LYS
86
B
LYS
86
1
14
15
B
ASP
103
B
ASP
103
HELX_P
B
PHE
111
B
PHE
111
1
15
9
B
HIS
114
B
HIS
114
HELX_P
B
ARG
120
B
ARG
120
1
16
7
B
HIS
134
B
HIS
134
HELX_P
B
PHE
142
B
PHE
142
1
17
9
B
PHE
142
B
PHE
142
HELX_P
B
TYR
151
B
TYR
151
1
18
10
B
LYS
159
B
LYS
159
HELX_P
B
GLY
164
B
GLY
164
1
19
6
B
ALA
166
B
ALA
166
HELX_P
B
ASN
177
B
ASN
177
1
20
12
B
ASP
191
B
ASP
191
HELX_P
B
PHE
196
B
PHE
196
5
21
6
B
ASP
236
B
ASP
236
HELX_P
B
SER
251
B
SER
251
1
22
16
B
PRO
305
B
PRO
305
HELX_P
B
GLY
315
B
GLY
315
1
23
11
metalc
2.131
A
GLU
37
A
OE1
GLU
37
1_555
A
ZN
401
C
ZN
ZN
1_555
metalc
2.129
A
GLU
42
A
OE2
GLU
42
1_555
A
ZN
401
C
ZN
ZN
1_555
metalc
2.320
A
CYS
66
A
SG
CYS
66
1_555
A
ZN
401
C
ZN
ZN
1_555
metalc
2.123
A
GLU
74
A
OE1
GLU
74
1_555
A
ZN
402
D
ZN
ZN
1_555
metalc
2.650
A
GLU
74
A
OE2
GLU
74
1_555
A
ZN
402
D
ZN
ZN
1_555
metalc
2.154
A
HIS
114
A
NE2
HIS
114
1_555
A
ZN
402
D
ZN
ZN
1_555
metalc
2.179
A
HIS
170
A
ND1
HIS
170
1_555
A
ZN
403
E
ZN
ZN
1_555
metalc
2.150
A
HIS
187
A
NE2
HIS
187
1_555
A
ZN
404
F
ZN
ZN
1_555
metalc
2.181
A
ZN
402
D
ZN
ZN
1_555
B
GLU
74
B
OE1
GLU
74
1_555
metalc
2.602
A
ZN
402
D
ZN
ZN
1_555
B
GLU
74
B
OE2
GLU
74
1_555
metalc
2.081
A
ZN
402
D
ZN
ZN
1_555
B
HIS
114
B
NE2
HIS
114
1_555
metalc
2.097
B
GLU
37
B
OE1
GLU
37
1_555
B
ZN
401
H
ZN
ZN
1_555
metalc
2.101
B
GLU
42
B
OE2
GLU
42
1_555
B
ZN
401
H
ZN
ZN
1_555
metalc
2.335
B
CYS
66
B
SG
CYS
66
1_555
B
ZN
401
H
ZN
ZN
1_555
HYDROLASE
P-loop GTPase, G-protein, metal homeostasis, HYDROLASE
YJIA_ECOLI
UNP
1
1
P24203
MNPIAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDL
LDNLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYADRILLTKT
DVAGEAEKLHERLARINARAPVYTVTHGDIDLGLLFNTNGFMLEENVVSTKPRFHFIADKQNDISSIVVELDYPVDISEV
SRVMENLLLESADKLLRYKGMLWIDGEPNRLLFQGVQRLYSADWDRPWGDEKPHSTMVFIGIQLPEEEIRAAFAGLRK
1
318
4IXM
1
318
P24203
A
1
1
318
1
318
4IXM
1
318
P24203
B
1
1
318
9
5
9
5
anti-parallel
anti-parallel
parallel
parallel
parallel
parallel
parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
parallel
parallel
parallel
parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
VAL
45
A
VAL
45
A
ILE
50
A
ILE
50
A
GLN
56
A
GLN
56
A
LEU
60
A
LEU
60
A
ILE
65
A
ILE
65
A
CYS
67
A
CYS
67
A
ILE
33
A
ILE
33
A
ILE
36
A
ILE
36
A
ARG
93
A
ARG
93
A
THR
99
A
THR
99
A
ILE
4
A
ILE
4
A
GLY
11
A
GLY
11
A
TYR
121
A
TYR
121
A
ASP
131
A
ASP
131
A
ARG
154
A
ARG
154
A
THR
158
A
THR
158
A
VAL
182
A
VAL
182
A
THR
184
A
THR
184
A
ILE
224
A
ILE
224
A
LEU
231
A
LEU
231
A
SER
295
A
SER
295
A
ILE
302
A
ILE
302
A
LEU
255
A
LEU
255
A
LEU
262
A
LEU
262
A
ASN
269
A
ASN
269
A
VAL
276
A
VAL
276
A
LEU
279
A
LEU
279
A
PRO
287
A
PRO
287
B
VAL
45
B
VAL
45
B
ILE
50
B
ILE
50
B
GLN
56
B
GLN
56
B
LEU
60
B
LEU
60
B
ILE
65
B
ILE
65
B
CYS
67
B
CYS
67
B
ILE
33
B
ILE
33
B
ILE
36
B
ILE
36
B
ARG
93
B
ARG
93
B
THR
99
B
THR
99
B
ILE
4
B
ILE
4
B
GLY
11
B
GLY
11
B
TYR
121
B
TYR
121
B
ASP
131
B
ASP
131
B
ARG
154
B
ARG
154
B
THR
158
B
THR
158
B
VAL
182
B
VAL
182
B
THR
184
B
THR
184
B
ILE
224
B
ILE
224
B
LEU
231
B
LEU
231
B
SER
295
B
SER
295
B
ILE
302
B
ILE
302
B
LEU
255
B
LEU
255
B
LEU
262
B
LEU
262
B
ASN
269
B
ASN
269
B
VAL
276
B
VAL
276
B
LEU
279
B
LEU
279
B
PRO
287
B
PRO
287
BINDING SITE FOR RESIDUE ZN A 401
A
ZN
401
Software
4
BINDING SITE FOR RESIDUE ZN A 402
A
ZN
402
Software
4
BINDING SITE FOR RESIDUE ZN A 403
A
ZN
403
Software
3
BINDING SITE FOR RESIDUE ZN A 404
A
ZN
404
Software
2
BINDING SITE FOR RESIDUE SO4 A 405
A
SO4
405
Software
4
BINDING SITE FOR RESIDUE ZN B 401
B
ZN
401
Software
4
BINDING SITE FOR RESIDUE SO4 B 402
B
SO4
402
Software
3
A
GLU
37
A
GLU
37
4
1_555
A
GLU
39
A
GLU
39
4
1_555
A
GLU
42
A
GLU
42
4
1_555
A
CYS
66
A
CYS
66
4
1_555
A
GLU
74
A
GLU
74
4
1_555
A
HIS
114
A
HIS
114
4
1_555
B
GLU
74
B
GLU
74
4
1_555
B
HIS
114
B
HIS
114
4
1_555
A
GLU
167
A
GLU
167
3
1_555
A
HIS
170
A
HIS
170
3
1_555
B
HIS
187
B
HIS
187
3
1_455
A
HIS
187
A
HIS
187
2
1_555
B
GLU
167
B
GLU
167
2
1_455
A
SER
113
A
SER
113
4
1_555
A
HIS
114
A
HIS
114
4
1_555
A
GLU
115
A
GLU
115
4
1_555
A
HOH
511
J
HOH
4
1_555
B
GLU
37
B
GLU
37
4
1_555
B
GLU
39
B
GLU
39
4
1_555
B
GLU
42
B
GLU
42
4
1_555
B
CYS
66
B
CYS
66
4
1_555
B
SER
113
B
SER
113
3
1_555
B
HIS
114
B
HIS
114
3
1_555
B
GLU
115
B
GLU
115
3
1_555
4
P 1 21 1