0.011792
0.006808
0.000000
0.000000
0.013616
0.000000
0.000000
0.000000
0.016297
0.00000
0.00000
0.00000
Joint Center for Structural Genomics (JCSG)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
6
90.000
90.000
120.000
84.802
84.802
61.362
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Cl -1
35.453
CHLORIDE ION
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C2 H6 O2
62.068
1,2-ETHANEDIOL
ETHYLENE GLYCOL
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 Se
196.106
n
SELENOMETHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
To be published
0353
Crystal structure of a hypothetical protein (BACUNI_04699) from Bacteroides uniformis ATCC 8492 at 2.00 A resolution
10.2210/pdb4iyk/pdb
pdb_00004iyk
100
1
KOHZU: Double Crystal Si(111)
CCD
2012-11-21
ADSC QUANTUM 315
Double Crystal Si(111)
MAD
M
x-ray
1
0.918401
1.0
0.979369
1.0
0.979152
1.0
8.2.2
ALS
0.918401,0.979369,0.979152
SYNCHROTRON
ALS BEAMLINE 8.2.2
25121.566
Uncharacterized protein
UNP residues 15-238
1
man
polymer
35.453
CHLORIDE ION
2
syn
non-polymer
62.068
1,2-ETHANEDIOL
6
syn
non-polymer
18.015
water
241
nat
water
no
yes
GLTSCEIDNYEGPDASIHGSILDEQTGELVGSD(MSE)ENGNAIKVREHGFTNATDQTWYITNTGEYRNN(MSE)VFAAT
YDVRFENGNFYPFEVKDFVVKSGDNVYDFKVIPYIRVKSPKVEKNGNVITATFSLEAGKQEVKLKEIQLFAFSD(MSE)W
VGNNVKLTLNGGTDKQVFSPSTAINSADIYTLSIDLGQNADVLKYSKNYYFRIGALADVSGVGTVRHNYAPVVVIKL
GLTSCEIDNYEGPDASIHGSILDEQTGELVGSDMENGNAIKVREHGFTNATDQTWYITNTGEYRNNMVFAATYDVRFENG
NFYPFEVKDFVVKSGDNVYDFKVIPYIRVKSPKVEKNGNVITATFSLEAGKQEVKLKEIQLFAFSDMWVGNNVKLTLNGG
TDKQVFSPSTAINSADIYTLSIDLGQNADVLKYSKNYYFRIGALADVSGVGTVRHNYAPVVVIKL
A
JCSG-417960
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
8492
411479
Bacteroides uniformis
562
Escherichia coli
PB1
Plasmid
SpeedET
1
2.54
51.49
VAPOR DIFFUSION, SITTING DROP
7.0
1.00M lithium chloride, 20.00% polyethylene glycol 6000, 0.1M HEPES pH 7.0, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 293K
293
Joint Center for Structural Genomics
JCSG
PSI:Biology
software
database_2
struct_conn
struct_ref_seq_dif
struct_site
repository
Initial release
Structure summary
Refinement description
Database references
Derived calculations
1
0
2013-02-20
1
1
2014-12-24
1
2
2017-11-15
1
3
2023-02-01
_software.classification
_software.name
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.pdbx_leaving_atom_flag
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Y
RCSB
Y
RCSB
2013-01-28
REL
REL
CL
CHLORIDE ION
EDO
1,2-ETHANEDIOL
HOH
water
THIS CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY RESIDUES 15-238 OF THE TARGET SEQUENCE.
CL
300
2
CL
CL
300
A
CL
301
2
CL
CL
301
A
EDO
302
3
EDO
EDO
302
A
EDO
303
3
EDO
EDO
303
A
EDO
304
3
EDO
EDO
304
A
EDO
305
3
EDO
EDO
305
A
EDO
306
3
EDO
EDO
306
A
EDO
307
3
EDO
EDO
307
A
HOH
308
4
HOH
HOH
401
A
HOH
309
4
HOH
HOH
402
A
HOH
310
4
HOH
HOH
403
A
HOH
311
4
HOH
HOH
404
A
HOH
312
4
HOH
HOH
405
A
HOH
313
4
HOH
HOH
406
A
HOH
314
4
HOH
HOH
407
A
HOH
315
4
HOH
HOH
408
A
HOH
316
4
HOH
HOH
409
A
HOH
317
4
HOH
HOH
410
A
HOH
318
4
HOH
HOH
411
A
HOH
319
4
HOH
HOH
412
A
HOH
320
4
HOH
HOH
413
A
HOH
321
4
HOH
HOH
414
A
HOH
322
4
HOH
HOH
415
A
HOH
323
4
HOH
HOH
416
A
HOH
324
4
HOH
HOH
417
A
HOH
325
4
HOH
HOH
418
A
HOH
326
4
HOH
HOH
419
A
HOH
327
4
HOH
HOH
420
A
HOH
328
4
HOH
HOH
421
A
HOH
329
4
HOH
HOH
422
A
HOH
330
4
HOH
HOH
423
A
HOH
331
4
HOH
HOH
424
A
HOH
332
4
HOH
HOH
425
A
HOH
333
4
HOH
HOH
426
A
HOH
334
4
HOH
HOH
427
A
HOH
335
4
HOH
HOH
428
A
HOH
336
4
HOH
HOH
429
A
HOH
337
4
HOH
HOH
430
A
HOH
338
4
HOH
HOH
431
A
HOH
339
4
HOH
HOH
432
A
HOH
340
4
HOH
HOH
433
A
HOH
341
4
HOH
HOH
434
A
HOH
342
4
HOH
HOH
435
A
HOH
343
4
HOH
HOH
436
A
HOH
344
4
HOH
HOH
437
A
HOH
345
4
HOH
HOH
438
A
HOH
346
4
HOH
HOH
439
A
HOH
347
4
HOH
HOH
440
A
HOH
348
4
HOH
HOH
441
A
HOH
349
4
HOH
HOH
442
A
HOH
350
4
HOH
HOH
443
A
HOH
351
4
HOH
HOH
444
A
HOH
352
4
HOH
HOH
445
A
HOH
353
4
HOH
HOH
446
A
HOH
354
4
HOH
HOH
447
A
HOH
355
4
HOH
HOH
448
A
HOH
356
4
HOH
HOH
449
A
HOH
357
4
HOH
HOH
450
A
HOH
358
4
HOH
HOH
451
A
HOH
359
4
HOH
HOH
452
A
HOH
360
4
HOH
HOH
453
A
HOH
361
4
HOH
HOH
454
A
HOH
362
4
HOH
HOH
455
A
HOH
363
4
HOH
HOH
456
A
HOH
364
4
HOH
HOH
457
A
HOH
365
4
HOH
HOH
458
A
HOH
366
4
HOH
HOH
459
A
HOH
367
4
HOH
HOH
460
A
HOH
368
4
HOH
HOH
461
A
HOH
369
4
HOH
HOH
462
A
HOH
370
4
HOH
HOH
463
A
HOH
371
4
HOH
HOH
464
A
HOH
372
4
HOH
HOH
465
A
HOH
373
4
HOH
HOH
466
A
HOH
374
4
HOH
HOH
467
A
HOH
375
4
HOH
HOH
468
A
HOH
376
4
HOH
HOH
469
A
HOH
377
4
HOH
HOH
470
A
HOH
378
4
HOH
HOH
471
A
HOH
379
4
HOH
HOH
472
A
HOH
380
4
HOH
HOH
473
A
HOH
381
4
HOH
HOH
474
A
HOH
382
4
HOH
HOH
475
A
HOH
383
4
HOH
HOH
476
A
HOH
384
4
HOH
HOH
477
A
HOH
385
4
HOH
HOH
478
A
HOH
386
4
HOH
HOH
479
A
HOH
387
4
HOH
HOH
480
A
HOH
388
4
HOH
HOH
481
A
HOH
389
4
HOH
HOH
482
A
HOH
390
4
HOH
HOH
483
A
HOH
391
4
HOH
HOH
484
A
HOH
392
4
HOH
HOH
485
A
HOH
393
4
HOH
HOH
486
A
HOH
394
4
HOH
HOH
487
A
HOH
395
4
HOH
HOH
488
A
HOH
396
4
HOH
HOH
489
A
HOH
397
4
HOH
HOH
490
A
HOH
398
4
HOH
HOH
491
A
HOH
399
4
HOH
HOH
492
A
HOH
400
4
HOH
HOH
493
A
HOH
401
4
HOH
HOH
494
A
HOH
402
4
HOH
HOH
495
A
HOH
403
4
HOH
HOH
496
A
HOH
404
4
HOH
HOH
497
A
HOH
405
4
HOH
HOH
498
A
HOH
406
4
HOH
HOH
499
A
HOH
407
4
HOH
HOH
500
A
HOH
408
4
HOH
HOH
501
A
HOH
409
4
HOH
HOH
502
A
HOH
410
4
HOH
HOH
503
A
HOH
411
4
HOH
HOH
504
A
HOH
412
4
HOH
HOH
505
A
HOH
413
4
HOH
HOH
506
A
HOH
414
4
HOH
HOH
507
A
HOH
415
4
HOH
HOH
508
A
HOH
416
4
HOH
HOH
509
A
HOH
417
4
HOH
HOH
510
A
HOH
418
4
HOH
HOH
511
A
HOH
419
4
HOH
HOH
512
A
HOH
420
4
HOH
HOH
513
A
HOH
421
4
HOH
HOH
514
A
HOH
422
4
HOH
HOH
515
A
HOH
423
4
HOH
HOH
516
A
HOH
424
4
HOH
HOH
517
A
HOH
425
4
HOH
HOH
518
A
HOH
426
4
HOH
HOH
519
A
HOH
427
4
HOH
HOH
520
A
HOH
428
4
HOH
HOH
521
A
HOH
429
4
HOH
HOH
522
A
HOH
430
4
HOH
HOH
523
A
HOH
431
4
HOH
HOH
524
A
HOH
432
4
HOH
HOH
525
A
HOH
433
4
HOH
HOH
526
A
HOH
434
4
HOH
HOH
527
A
HOH
435
4
HOH
HOH
528
A
HOH
436
4
HOH
HOH
529
A
HOH
437
4
HOH
HOH
530
A
HOH
438
4
HOH
HOH
531
A
HOH
439
4
HOH
HOH
532
A
HOH
440
4
HOH
HOH
533
A
HOH
441
4
HOH
HOH
534
A
HOH
442
4
HOH
HOH
535
A
HOH
443
4
HOH
HOH
536
A
HOH
444
4
HOH
HOH
537
A
HOH
445
4
HOH
HOH
538
A
HOH
446
4
HOH
HOH
539
A
HOH
447
4
HOH
HOH
540
A
HOH
448
4
HOH
HOH
541
A
HOH
449
4
HOH
HOH
542
A
HOH
450
4
HOH
HOH
543
A
HOH
451
4
HOH
HOH
544
A
HOH
452
4
HOH
HOH
545
A
HOH
453
4
HOH
HOH
546
A
HOH
454
4
HOH
HOH
547
A
HOH
455
4
HOH
HOH
548
A
HOH
456
4
HOH
HOH
549
A
HOH
457
4
HOH
HOH
550
A
HOH
458
4
HOH
HOH
551
A
HOH
459
4
HOH
HOH
552
A
HOH
460
4
HOH
HOH
553
A
HOH
461
4
HOH
HOH
554
A
HOH
462
4
HOH
HOH
555
A
HOH
463
4
HOH
HOH
556
A
HOH
464
4
HOH
HOH
557
A
HOH
465
4
HOH
HOH
558
A
HOH
466
4
HOH
HOH
559
A
HOH
467
4
HOH
HOH
560
A
HOH
468
4
HOH
HOH
561
A
HOH
469
4
HOH
HOH
562
A
HOH
470
4
HOH
HOH
563
A
HOH
471
4
HOH
HOH
564
A
HOH
472
4
HOH
HOH
565
A
HOH
473
4
HOH
HOH
566
A
HOH
474
4
HOH
HOH
567
A
HOH
475
4
HOH
HOH
568
A
HOH
476
4
HOH
HOH
569
A
HOH
477
4
HOH
HOH
570
A
HOH
478
4
HOH
HOH
571
A
HOH
479
4
HOH
HOH
572
A
HOH
480
4
HOH
HOH
573
A
HOH
481
4
HOH
HOH
574
A
HOH
482
4
HOH
HOH
575
A
HOH
483
4
HOH
HOH
576
A
HOH
484
4
HOH
HOH
577
A
HOH
485
4
HOH
HOH
578
A
HOH
486
4
HOH
HOH
579
A
HOH
487
4
HOH
HOH
580
A
HOH
488
4
HOH
HOH
581
A
HOH
489
4
HOH
HOH
582
A
HOH
490
4
HOH
HOH
583
A
HOH
491
4
HOH
HOH
584
A
HOH
492
4
HOH
HOH
585
A
HOH
493
4
HOH
HOH
586
A
HOH
494
4
HOH
HOH
587
A
HOH
495
4
HOH
HOH
588
A
HOH
496
4
HOH
HOH
589
A
HOH
497
4
HOH
HOH
590
A
HOH
498
4
HOH
HOH
591
A
HOH
499
4
HOH
HOH
592
A
HOH
500
4
HOH
HOH
593
A
HOH
501
4
HOH
HOH
594
A
HOH
502
4
HOH
HOH
595
A
HOH
503
4
HOH
HOH
596
A
HOH
504
4
HOH
HOH
597
A
HOH
505
4
HOH
HOH
598
A
HOH
506
4
HOH
HOH
599
A
HOH
507
4
HOH
HOH
600
A
HOH
508
4
HOH
HOH
601
A
HOH
509
4
HOH
HOH
602
A
HOH
510
4
HOH
HOH
603
A
HOH
511
4
HOH
HOH
604
A
HOH
512
4
HOH
HOH
605
A
HOH
513
4
HOH
HOH
606
A
HOH
514
4
HOH
HOH
607
A
HOH
515
4
HOH
HOH
608
A
HOH
516
4
HOH
HOH
609
A
HOH
517
4
HOH
HOH
610
A
HOH
518
4
HOH
HOH
611
A
HOH
519
4
HOH
HOH
612
A
HOH
520
4
HOH
HOH
613
A
HOH
521
4
HOH
HOH
614
A
HOH
522
4
HOH
HOH
615
A
HOH
523
4
HOH
HOH
616
A
HOH
524
4
HOH
HOH
617
A
HOH
525
4
HOH
HOH
618
A
HOH
526
4
HOH
HOH
619
A
HOH
527
4
HOH
HOH
620
A
HOH
528
4
HOH
HOH
621
A
HOH
529
4
HOH
HOH
622
A
HOH
530
4
HOH
HOH
623
A
HOH
531
4
HOH
HOH
624
A
HOH
532
4
HOH
HOH
625
A
HOH
533
4
HOH
HOH
626
A
HOH
534
4
HOH
HOH
627
A
HOH
535
4
HOH
HOH
628
A
HOH
536
4
HOH
HOH
629
A
HOH
537
4
HOH
HOH
630
A
HOH
538
4
HOH
HOH
631
A
HOH
539
4
HOH
HOH
632
A
HOH
540
4
HOH
HOH
633
A
HOH
541
4
HOH
HOH
634
A
HOH
542
4
HOH
HOH
635
A
HOH
543
4
HOH
HOH
636
A
HOH
544
4
HOH
HOH
637
A
HOH
545
4
HOH
HOH
638
A
HOH
546
4
HOH
HOH
639
A
HOH
547
4
HOH
HOH
640
A
HOH
548
4
HOH
HOH
641
A
n
1
0
A
n
2
15
A
n
3
16
A
n
4
17
A
n
5
18
A
n
6
19
A
n
7
20
A
n
8
21
A
n
9
22
A
n
10
23
A
n
11
24
A
GLY
25
n
12
GLY
25
A
PRO
26
n
13
PRO
26
A
ASP
27
n
14
ASP
27
A
ALA
28
n
15
ALA
28
A
SER
29
n
16
SER
29
A
ILE
30
n
17
ILE
30
A
HIS
31
n
18
HIS
31
A
GLY
32
n
19
GLY
32
A
SER
33
n
20
SER
33
A
ILE
34
n
21
ILE
34
A
LEU
35
n
22
LEU
35
A
ASP
36
n
23
ASP
36
A
GLU
37
n
24
GLU
37
A
GLN
38
n
25
GLN
38
A
THR
39
n
26
THR
39
A
GLY
40
n
27
GLY
40
A
GLU
41
n
28
GLU
41
A
LEU
42
n
29
LEU
42
A
VAL
43
n
30
VAL
43
A
GLY
44
n
31
GLY
44
A
SER
45
n
32
SER
45
A
ASP
46
n
33
ASP
46
A
MSE
47
n
34
MSE
47
A
GLU
48
n
35
GLU
48
A
ASN
49
n
36
ASN
49
A
GLY
50
n
37
GLY
50
A
ASN
51
n
38
ASN
51
A
ALA
52
n
39
ALA
52
A
ILE
53
n
40
ILE
53
A
LYS
54
n
41
LYS
54
A
VAL
55
n
42
VAL
55
A
ARG
56
n
43
ARG
56
A
GLU
57
n
44
GLU
57
A
HIS
58
n
45
HIS
58
A
GLY
59
n
46
GLY
59
A
n
47
60
A
n
48
61
A
n
49
62
A
n
50
63
A
THR
64
n
51
THR
64
A
ASP
65
n
52
ASP
65
A
GLN
66
n
53
GLN
66
A
THR
67
n
54
THR
67
A
TRP
68
n
55
TRP
68
A
TYR
69
n
56
TYR
69
A
ILE
70
n
57
ILE
70
A
THR
71
n
58
THR
71
A
ASN
72
n
59
ASN
72
A
THR
73
n
60
THR
73
A
GLY
74
n
61
GLY
74
A
GLU
75
n
62
GLU
75
A
TYR
76
n
63
TYR
76
A
ARG
77
n
64
ARG
77
A
ASN
78
n
65
ASN
78
A
ASN
79
n
66
ASN
79
A
MSE
80
n
67
MSE
80
A
VAL
81
n
68
VAL
81
A
PHE
82
n
69
PHE
82
A
ALA
83
n
70
ALA
83
A
ALA
84
n
71
ALA
84
A
THR
85
n
72
THR
85
A
TYR
86
n
73
TYR
86
A
ASP
87
n
74
ASP
87
A
VAL
88
n
75
VAL
88
A
ARG
89
n
76
ARG
89
A
PHE
90
n
77
PHE
90
A
GLU
91
n
78
GLU
91
A
ASN
92
n
79
ASN
92
A
GLY
93
n
80
GLY
93
A
ASN
94
n
81
ASN
94
A
PHE
95
n
82
PHE
95
A
TYR
96
n
83
TYR
96
A
PRO
97
n
84
PRO
97
A
PHE
98
n
85
PHE
98
A
GLU
99
n
86
GLU
99
A
VAL
100
n
87
VAL
100
A
LYS
101
n
88
LYS
101
A
ASP
102
n
89
ASP
102
A
PHE
103
n
90
PHE
103
A
VAL
104
n
91
VAL
104
A
VAL
105
n
92
VAL
105
A
LYS
106
n
93
LYS
106
A
SER
107
n
94
SER
107
A
GLY
108
n
95
GLY
108
A
ASP
109
n
96
ASP
109
A
ASN
110
n
97
ASN
110
A
VAL
111
n
98
VAL
111
A
TYR
112
n
99
TYR
112
A
ASP
113
n
100
ASP
113
A
PHE
114
n
101
PHE
114
A
LYS
115
n
102
LYS
115
A
VAL
116
n
103
VAL
116
A
ILE
117
n
104
ILE
117
A
PRO
118
n
105
PRO
118
A
TYR
119
n
106
TYR
119
A
ILE
120
n
107
ILE
120
A
ARG
121
n
108
ARG
121
A
VAL
122
n
109
VAL
122
A
LYS
123
n
110
LYS
123
A
SER
124
n
111
SER
124
A
PRO
125
n
112
PRO
125
A
LYS
126
n
113
LYS
126
A
VAL
127
n
114
VAL
127
A
GLU
128
n
115
GLU
128
A
LYS
129
n
116
LYS
129
A
ASN
130
n
117
ASN
130
A
GLY
131
n
118
GLY
131
A
ASN
132
n
119
ASN
132
A
VAL
133
n
120
VAL
133
A
ILE
134
n
121
ILE
134
A
THR
135
n
122
THR
135
A
ALA
136
n
123
ALA
136
A
THR
137
n
124
THR
137
A
PHE
138
n
125
PHE
138
A
SER
139
n
126
SER
139
A
LEU
140
n
127
LEU
140
A
GLU
141
n
128
GLU
141
A
ALA
142
n
129
ALA
142
A
GLY
143
n
130
GLY
143
A
LYS
144
n
131
LYS
144
A
GLN
145
n
132
GLN
145
A
GLU
146
n
133
GLU
146
A
VAL
147
n
134
VAL
147
A
LYS
148
n
135
LYS
148
A
LEU
149
n
136
LEU
149
A
LYS
150
n
137
LYS
150
A
GLU
151
n
138
GLU
151
A
ILE
152
n
139
ILE
152
A
GLN
153
n
140
GLN
153
A
LEU
154
n
141
LEU
154
A
PHE
155
n
142
PHE
155
A
ALA
156
n
143
ALA
156
A
PHE
157
n
144
PHE
157
A
SER
158
n
145
SER
158
A
ASP
159
n
146
ASP
159
A
MSE
160
n
147
MSE
160
A
TRP
161
n
148
TRP
161
A
VAL
162
n
149
VAL
162
A
GLY
163
n
150
GLY
163
A
ASN
164
n
151
ASN
164
A
ASN
165
n
152
ASN
165
A
VAL
166
n
153
VAL
166
A
LYS
167
n
154
LYS
167
A
LEU
168
n
155
LEU
168
A
THR
169
n
156
THR
169
A
LEU
170
n
157
LEU
170
A
ASN
171
n
158
ASN
171
A
GLY
172
n
159
GLY
172
A
GLY
173
n
160
GLY
173
A
THR
174
n
161
THR
174
A
ASP
175
n
162
ASP
175
A
LYS
176
n
163
LYS
176
A
GLN
177
n
164
GLN
177
A
VAL
178
n
165
VAL
178
A
PHE
179
n
166
PHE
179
A
SER
180
n
167
SER
180
A
PRO
181
n
168
PRO
181
A
SER
182
n
169
SER
182
A
THR
183
n
170
THR
183
A
ALA
184
n
171
ALA
184
A
ILE
185
n
172
ILE
185
A
ASN
186
n
173
ASN
186
A
SER
187
n
174
SER
187
A
ALA
188
n
175
ALA
188
A
ASP
189
n
176
ASP
189
A
ILE
190
n
177
ILE
190
A
TYR
191
n
178
TYR
191
A
THR
192
n
179
THR
192
A
LEU
193
n
180
LEU
193
A
SER
194
n
181
SER
194
A
ILE
195
n
182
ILE
195
A
ASP
196
n
183
ASP
196
A
LEU
197
n
184
LEU
197
A
GLY
198
n
185
GLY
198
A
GLN
199
n
186
GLN
199
A
ASN
200
n
187
ASN
200
A
ALA
201
n
188
ALA
201
A
ASP
202
n
189
ASP
202
A
VAL
203
n
190
VAL
203
A
LEU
204
n
191
LEU
204
A
LYS
205
n
192
LYS
205
A
TYR
206
n
193
TYR
206
A
SER
207
n
194
SER
207
A
LYS
208
n
195
LYS
208
A
ASN
209
n
196
ASN
209
A
TYR
210
n
197
TYR
210
A
TYR
211
n
198
TYR
211
A
PHE
212
n
199
PHE
212
A
ARG
213
n
200
ARG
213
A
ILE
214
n
201
ILE
214
A
GLY
215
n
202
GLY
215
A
ALA
216
n
203
ALA
216
A
LEU
217
n
204
LEU
217
A
ALA
218
n
205
ALA
218
A
ASP
219
n
206
ASP
219
A
VAL
220
n
207
VAL
220
A
SER
221
n
208
SER
221
A
GLY
222
n
209
GLY
222
A
VAL
223
n
210
VAL
223
A
GLY
224
n
211
GLY
224
A
THR
225
n
212
THR
225
A
VAL
226
n
213
VAL
226
A
ARG
227
n
214
ARG
227
A
HIS
228
n
215
HIS
228
A
ASN
229
n
216
ASN
229
A
TYR
230
n
217
TYR
230
A
ALA
231
n
218
ALA
231
A
PRO
232
n
219
PRO
232
A
VAL
233
n
220
VAL
233
A
VAL
234
n
221
VAL
234
A
VAL
235
n
222
VAL
235
A
ILE
236
n
223
ILE
236
A
LYS
237
n
224
LYS
237
A
LEU
238
n
225
LEU
238
A
3.0947
0.5034
0.4162
0.5762
0.4398
1.6726
-0.0429
-0.5755
-0.0438
-0.0046
0.0287
-0.0382
-0.1287
-0.4381
0.0143
-0.1576
0.0916
0.0452
0.0928
0.0180
-0.1456
refined
22.6843
35.2450
26.9267
X-RAY DIFFRACTION
A
25
A
238
X-RAY DIFFRACTION
1
{ A|25 - A|238 }
author_and_software_defined_assembly
PISA
1
monomeric
A
MSE
47
SELENOMETHIONINE
A
MSE
34
MET
A
MSE
80
SELENOMETHIONINE
A
MSE
67
MET
A
MSE
160
SELENOMETHIONINE
A
MSE
147
MET
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
ASN
78
A
O
ASN
65
A
N
ILE
30
A
N
ILE
17
A
N
SER
29
A
N
SER
16
A
O
GLY
108
A
O
GLY
95
A
O
ASN
78
A
O
ASN
65
A
N
ILE
30
A
N
ILE
17
A
N
LEU
35
A
N
LEU
22
A
O
PHE
114
A
O
PHE
101
A
O
TRP
68
A
O
TRP
55
A
N
ILE
53
A
N
ILE
40
A
N
LYS
54
A
N
LYS
41
A
O
ARG
89
A
O
ARG
76
A
N
TYR
86
A
N
TYR
73
A
O
PHE
103
A
O
PHE
90
A
N
LYS
123
A
N
LYS
110
A
O
SER
139
A
O
SER
126
A
N
PHE
138
A
N
PHE
125
A
O
TYR
191
A
O
TYR
178
A
O
THR
183
A
O
THR
170
A
N
LEU
149
A
N
LEU
136
A
N
GLN
153
A
N
GLN
140
A
O
GLY
215
A
O
GLY
202
A
N
ALA
216
A
N
ALA
203
A
O
ASN
229
A
O
ASN
216
A
O
THR
183
A
O
THR
170
A
N
LEU
149
A
N
LEU
136
A
N
GLN
153
A
N
GLN
140
A
O
GLY
215
A
O
GLY
202
A
N
TYR
210
A
N
TYR
197
A
O
ILE
236
A
O
ILE
223
1
A
GLY
0
A
GLY
1
1
Y
1
A
LEU
15
A
LEU
2
1
Y
1
A
THR
16
A
THR
3
1
Y
1
A
SER
17
A
SER
4
1
Y
1
A
CYS
18
A
CYS
5
1
Y
1
A
GLU
19
A
GLU
6
1
Y
1
A
ILE
20
A
ILE
7
1
Y
1
A
ASP
21
A
ASP
8
1
Y
1
A
ASN
22
A
ASN
9
1
Y
1
A
TYR
23
A
TYR
10
1
Y
1
A
GLU
24
A
GLU
11
1
Y
1
A
PHE
60
A
PHE
47
1
Y
1
A
THR
61
A
THR
48
1
Y
1
A
ASN
62
A
ASN
49
1
Y
1
A
ALA
63
A
ALA
50
1
Y
1
A
SER
45
-151.07
-158.39
1
A
SER
207
76.85
-1.89
133.920
42.1207
18.310
-4.6191
0.0000
0.0000
-4.6191
0.0000
9.2382
0.9480
0.9331
1.A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 2.ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B FACTORS. 3.ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U FACTORS. 4.CHLORIDE (CL) AND 1,2-ETHANEDIOL (EDO) FROM THE CRYSTALLIZATION AND CRYOPROTECTANT SOLUTION ARE MODELED.
0.2070
0.1735
0.1752
2.0000
28.310
864
17006
5.0800
99.4700
1.000
0.150
RANDOM
1
THROUGHOUT
0.000
MAD
0.310
2.0000
28.310
241
1914
26
0
1647
806
SINUSOIDAL
2.000
53
HARMONIC
2.000
252
HARMONIC
5.000
1738
HARMONIC
20.000
224
SEMIHARMONIC
5.000
2059
SEMIHARMONIC
4.000
0.010
1738
HARMONIC
2.000
1.090
2351
HARMONIC
2.000
3.830
2.770
0.2276
0.2129
0.2137
2.1200
150
2531
2681
9
5.5900
99.4700
31.372
2.00
28.310
4IYK
17020
-3.000
0.049
1
15.220
98.000
0.440
2.000
2.070
2.2
7641
3040
1
92.000
0.335
2.070
2.150
3.2
9317
3178
1
98.500
0.241
2.150
2.250
4.3
9723
3326
1
98.500
0.184
2.250
2.370
5.7
9874
3382
1
98.400
0.132
2.370
2.520
7.8
9657
3302
1
98.900
0.098
2.520
2.710
10.6
9439
3232
1
98.600
0.061
2.710
2.990
16.6
9901
3401
1
98.900
0.035
2.990
3.420
26.9
9487
3277
1
98.700
0.027
3.420
4.300
34.4
9402
3286
1
99.200
0.022
4.300
28.310
39.1
9559
3334
1
98.500
model building
D.C. & J.S. Richardson lab
molprobity@kinemage.biochem.duke.edu
http://kinemage.biochem.duke.edu/molprobity/
MolProbity
package
3beta29
data extraction
PDB
deposit@deposit.rcsb.org
June 10, 2010
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.10
phasing
George M. Sheldrick
gsheldr@shelx.uni-ac.gwdg.de
Fortran_77
http://shelx.uni-ac.gwdg.de/SHELX/
SHELX
package
phasing
Eric de La Fortelle
sharp-develop@globalphasing.com
http://www.globalphasing.com/sharp/
SHARP
package
data scaling
Wolfgang Kabsch
http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html
XSCALE
package
March 15, 2012
refinement
Gerard Bricogne
buster-develop@GlobalPhasing.com
http://www.globalphasing.com/buster/
BUSTER-TNT
program
data reduction
XDS
phasing
SHELXD
phasing
autoSHARP
refinement
BUSTER
2.10.0
Crystal structure of a putative carbohydrate binding protein (BACUNI_04699) from Bacteroides uniformis ATCC 8492 at 2.00 A resolution
1
N
N
2
N
N
2
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
4
N
N
A
GLY
198
A
GLY
185
HELX_P
A
ALA
201
A
ALA
188
5
1
4
covale
1.355
both
A
ASP
46
A
C
ASP
33
1_555
A
MSE
47
A
N
MSE
34
1_555
covale
1.334
both
A
MSE
47
A
C
MSE
34
1_555
A
GLU
48
A
N
GLU
35
1_555
covale
1.342
both
A
ASN
79
A
C
ASN
66
1_555
A
MSE
80
A
N
MSE
67
1_555
covale
1.336
both
A
MSE
80
A
C
MSE
67
1_555
A
VAL
81
A
N
VAL
68
1_555
covale
1.351
both
A
ASP
159
A
C
ASP
146
1_555
A
MSE
160
A
N
MSE
147
1_555
covale
1.347
both
A
MSE
160
A
C
MSE
147
1_555
A
TRP
161
A
N
TRP
148
1_555
STRUCTURAL GENOMICS, UNKNOWN FUNCTION
PF12866 family protein, DUF3823, putative carbohydrate binding protein, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-BIOLOGY, UNKNOWN FUNCTION
A
SER
180
A
SER
167
1
A
PRO
181
A
PRO
168
0.66
A7VAR7_BACUN
UNP
1
15
A7VAR7
LTSCEIDNYEGPDASIHGSILDEQTGELVGSDMENGNAIKVREHGFTNATDQTWYITNTGEYRNNMVFAATYDVRFENGN
FYPFEVKDFVVKSGDNVYDFKVIPYIRVKSPKVEKNGNVITATFSLEAGKQEVKLKEIQLFAFSDMWVGNNVKLTLNGGT
DKQVFSPSTAINSADIYTLSIDLGQNADVLKYSKNYYFRIGALADVSGVGTVRHNYAPVVVIKL
15
238
4IYK
15
238
A7VAR7
A
1
2
225
1
expression tag
GLY
0
4IYK
A
A7VAR7
UNP
1
3
3
4
3
4
4
anti-parallel
parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
GLU
75
A
GLU
62
A
VAL
81
A
VAL
68
A
ALA
28
A
ALA
15
A
ASP
36
A
ASP
23
A
GLY
108
A
GLY
95
A
VAL
111
A
VAL
98
A
GLU
75
A
GLU
62
A
VAL
81
A
VAL
68
A
ALA
28
A
ALA
15
A
ASP
36
A
ASP
23
A
PHE
114
A
PHE
101
A
VAL
116
A
VAL
103
A
GLN
66
A
GLN
53
A
TRP
68
A
TRP
55
A
ILE
53
A
ILE
40
A
GLU
57
A
GLU
44
A
ALA
84
A
ALA
71
A
PHE
90
A
PHE
77
A
PHE
98
A
PHE
85
A
VAL
105
A
VAL
92
A
ILE
120
A
ILE
107
A
ASN
130
A
ASN
117
A
VAL
133
A
VAL
120
A
ALA
142
A
ALA
129
A
TYR
191
A
TYR
178
A
ASP
196
A
ASP
183
A
LYS
176
A
LYS
163
A
ALA
184
A
ALA
171
A
LYS
148
A
LYS
135
A
PHE
157
A
PHE
144
A
ASN
209
A
ASN
196
A
ASP
219
A
ASP
206
A
ASN
229
A
ASN
216
A
TYR
230
A
TYR
217
A
LYS
176
A
LYS
163
A
ALA
184
A
ALA
171
A
LYS
148
A
LYS
135
A
PHE
157
A
PHE
144
A
ASN
209
A
ASN
196
A
ASP
219
A
ASP
206
A
VAL
234
A
VAL
221
A
LYS
237
A
LYS
224
BINDING SITE FOR RESIDUE CL A 300
A
CL
300
Software
1
BINDING SITE FOR RESIDUE CL A 301
A
CL
301
Software
1
BINDING SITE FOR RESIDUE EDO A 302
A
EDO
302
Software
2
BINDING SITE FOR RESIDUE EDO A 303
A
EDO
303
Software
4
BINDING SITE FOR RESIDUE EDO A 304
A
EDO
304
Software
2
BINDING SITE FOR RESIDUE EDO A 305
A
EDO
305
Software
6
BINDING SITE FOR RESIDUE EDO A 306
A
EDO
306
Software
4
BINDING SITE FOR RESIDUE EDO A 307
A
EDO
307
Software
2
A
ASN
209
A
ASN
196
1
1_555
A
GLN
145
A
GLN
132
1
1_555
A
TYR
112
A
TYR
99
2
1_555
A
ASP
113
A
ASP
100
2
1_555
A
ASN
164
A
ASN
151
4
1_555
A
VAL
226
A
VAL
213
4
1_555
A
ARG
227
A
ARG
214
4
1_555
A
HOH
446
J
HOH
4
1_555
A
VAL
178
A
VAL
165
2
1_555
A
SER
180
A
SER
167
2
1_555
A
LYS
144
A
LYS
131
6
1_555
A
GLU
146
A
GLU
133
6
1_555
A
TYR
211
A
TYR
198
6
4_665
A
VAL
235
A
VAL
222
6
4_665
A
HOH
562
J
HOH
6
4_665
A
HOH
596
J
HOH
6
1_555
A
ARG
77
A
ARG
64
4
1_555
A
ASN
79
A
ASN
66
4
1_555
A
ASP
109
A
ASP
96
4
1_555
A
PRO
181
A
PRO
168
4
4_664
A
TYR
112
A
TYR
99
2
1_555
A
LYS
115
A
LYS
102
2
1_555
173
P 63