0.023127 0.000000 0.000000 -0.000000 0.017057 0.000000 0.000000 -0.000000 0.008630 0.000000 0.000000 0.000000 Osipiuk, J. Nocek, B. Gu, M. Kwon, K. Anderson, W.F. Joachimiak, A. Center for Structural Genomics of Infectious Diseases (CSGID) http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.000 90.000 90.000 43.239 58.626 115.874 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 S C N 76 N C N 77 N O N 78 N C N 79 N C N 80 N C N 81 N O N 82 N N N 83 N O N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N N N 95 S C N 96 N C N 97 N O N 98 N C N 99 N C N 100 N C N 101 N O N 102 N O N 103 N O N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N N N 114 N C N 115 N C N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N N N 124 S C N 125 N C N 126 N O N 127 N C Y 128 N C Y 129 N N Y 130 N C Y 131 N C Y 132 N N N 133 N O N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N O N 145 N H N 146 N H N 147 N N N 148 S C N 149 N C N 150 N O N 151 S C N 152 N C N 153 N C N 154 N C N 155 N O N 156 N H N 157 N H N 158 N H N 159 N H N 160 N H N 161 N H N 162 N H N 163 N H N 164 N H N 165 N H N 166 N H N 167 N H N 168 N H N 169 N N N 170 S C N 171 N C N 172 N O N 173 N C N 174 N C N 175 N C N 176 N C N 177 N O N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N N N 192 S C N 193 N C N 194 N O N 195 N C N 196 N C N 197 N C N 198 N C N 199 N N N 200 N O N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N N N 217 S C N 218 N C N 219 N O N 220 N C N 221 N C N 222 N S N 223 N C N 224 N O N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N N N 237 S C N 238 N C N 239 N O N 240 N C Y 241 N C Y 242 N C Y 243 N C Y 244 N C Y 245 N C Y 246 N C N 247 N O N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N N N 260 S C N 261 N C N 262 N O N 263 N C N 264 N C N 265 N C N 266 N O N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 N H N 275 N H N 276 N N N 277 S C N 278 N C N 279 N O N 280 N C N 281 N O N 282 N O N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N N N 291 S C N 292 N C N 293 N O N 294 R C N 295 N O N 296 N C N 297 N O N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N H N 306 N H N 307 N N N 308 S C N 309 N C N 310 N O N 311 N C Y 312 N C Y 313 N C Y 314 N C Y 315 N C Y 316 N C Y 317 N C N 318 N O N 319 N O N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 N H N 326 N H N 327 N H N 328 N H N 329 N H N 330 N H N 331 N N N 332 S C N 333 N C N 334 N O N 335 N C N 336 N C N 337 N C N 338 N O N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N doub N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N doub N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N doub N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N doub N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N doub N 123 N sing N 124 N sing N 125 N sing N 126 N sing Y 127 N sing Y 128 N doub Y 129 N doub N 130 N sing Y 131 N sing N 132 N sing Y 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N doub N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N doub N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N doub N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N doub N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N doub N 231 N sing N 232 N sing N 233 N sing N 234 N sing Y 235 N doub Y 236 N sing Y 237 N sing N 238 N sing Y 239 N doub N 240 N sing Y 241 N doub N 242 N sing Y 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N doub N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N doub N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N doub N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N doub N 300 N sing N 301 N sing N 302 N sing N 303 N sing Y 304 N doub Y 305 N sing Y 306 N sing N 307 N sing Y 308 N doub N 309 N sing Y 310 N doub N 311 N sing Y 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N doub N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing To be Published 0353 30S ribosomal protein S15 from Campylobacter jejuni 10.2210/pdb4iyl/pdb pdb_00004iyl 100 1 CCD 2010-08-25 ADSC QUANTUM 315r double crystal monochromator SINGLE WAVELENGTH M x-ray 1 0.9792 1.0 19-ID APS 0.9792 SYNCHROTRON APS BEAMLINE 19-ID 10519.337 30S ribosomal protein S15 1 man polymer 18.015 water 4 nat water no no SNAMALDSAKKAEIVAKFAKKPGDTGSTEVQVALLTARIAELTEHLKIYKKDFSSRLGLLKLVGQRKRLLSYLKRKDYNS YSKLITELNLRDK SNAMALDSAKKAEIVAKFAKKPGDTGSTEVQVALLTARIAELTEHLKIYKKDFSSRLGLLKLVGQRKRLLSYLKRKDYNS YSKLITELNLRDK A CSGID-IDP90515 polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n NCTC 11168 sample Cj0884, rpsO 192222 Campylobacter jejuni subsp. jejuni 469008 Escherichia coli BL21(DE3) plasmid pMCSG7 1 3.49 64.76 VAPOR DIFFUSION, SITTING DROP 7.1 0.49 M sodium phosphate, 0.91 M di-potassium phosphate, pH 7.1, VAPOR DIFFUSION, SITTING DROP, temperature 289K 289 Center for Structural Genomics of Infectious Diseases CSGID NIAID, National Institute of Allergy and Infectious Diseases software chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model struct_ref_seq_dif repository Initial release Refinement description Data collection Database references Refinement description 1 0 2013-02-06 1 1 2017-11-15 1 2 2023-09-20 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_ref_seq_dif.details 2013-02-06 SPRSDE Y RCSB Y RCSB 2013-01-28 REL REL HOH water 2Y0Y PDB ENTRY 2Y0Y PDB experimental model HOH 1 2 HOH HOH 101 A HOH 12 2 HOH HOH 102 A HOH 13 2 HOH HOH 103 A HOH 30 2 HOH HOH 104 A n 1 -2 A n 2 -1 A n 3 0 A n 4 1 A n 5 2 A LEU 3 n 6 LEU 3 A ASP 4 n 7 ASP 4 A SER 5 n 8 SER 5 A ALA 6 n 9 ALA 6 A LYS 7 n 10 LYS 7 A LYS 8 n 11 LYS 8 A ALA 9 n 12 ALA 9 A GLU 10 n 13 GLU 10 A ILE 11 n 14 ILE 11 A VAL 12 n 15 VAL 12 A ALA 13 n 16 ALA 13 A LYS 14 n 17 LYS 14 A PHE 15 n 18 PHE 15 A ALA 16 n 19 ALA 16 A LYS 17 n 20 LYS 17 A LYS 18 n 21 LYS 18 A PRO 19 n 22 PRO 19 A GLY 20 n 23 GLY 20 A ASP 21 n 24 ASP 21 A THR 22 n 25 THR 22 A GLY 23 n 26 GLY 23 A SER 24 n 27 SER 24 A THR 25 n 28 THR 25 A GLU 26 n 29 GLU 26 A VAL 27 n 30 VAL 27 A GLN 28 n 31 GLN 28 A VAL 29 n 32 VAL 29 A ALA 30 n 33 ALA 30 A LEU 31 n 34 LEU 31 A LEU 32 n 35 LEU 32 A THR 33 n 36 THR 33 A ALA 34 n 37 ALA 34 A ARG 35 n 38 ARG 35 A ILE 36 n 39 ILE 36 A ALA 37 n 40 ALA 37 A GLU 38 n 41 GLU 38 A LEU 39 n 42 LEU 39 A THR 40 n 43 THR 40 A GLU 41 n 44 GLU 41 A HIS 42 n 45 HIS 42 A LEU 43 n 46 LEU 43 A LYS 44 n 47 LYS 44 A ILE 45 n 48 ILE 45 A TYR 46 n 49 TYR 46 A LYS 47 n 50 LYS 47 A LYS 48 n 51 LYS 48 A ASP 49 n 52 ASP 49 A PHE 50 n 53 PHE 50 A SER 51 n 54 SER 51 A SER 52 n 55 SER 52 A ARG 53 n 56 ARG 53 A LEU 54 n 57 LEU 54 A GLY 55 n 58 GLY 55 A LEU 56 n 59 LEU 56 A LEU 57 n 60 LEU 57 A LYS 58 n 61 LYS 58 A LEU 59 n 62 LEU 59 A VAL 60 n 63 VAL 60 A GLY 61 n 64 GLY 61 A GLN 62 n 65 GLN 62 A ARG 63 n 66 ARG 63 A LYS 64 n 67 LYS 64 A ARG 65 n 68 ARG 65 A LEU 66 n 69 LEU 66 A LEU 67 n 70 LEU 67 A SER 68 n 71 SER 68 A TYR 69 n 72 TYR 69 A LEU 70 n 73 LEU 70 A LYS 71 n 74 LYS 71 A ARG 72 n 75 ARG 72 A LYS 73 n 76 LYS 73 A ASP 74 n 77 ASP 74 A TYR 75 n 78 TYR 75 A ASN 76 n 79 ASN 76 A SER 77 n 80 SER 77 A TYR 78 n 81 TYR 78 A SER 79 n 82 SER 79 A LYS 80 n 83 LYS 80 A LEU 81 n 84 LEU 81 A ILE 82 n 85 ILE 82 A THR 83 n 86 THR 83 A GLU 84 n 87 GLU 84 A LEU 85 n 88 LEU 85 A ASN 86 n 89 ASN 86 A LEU 87 n 90 LEU 87 A n 91 88 A n 92 89 A n 93 90 A author_defined_assembly 1 monomeric software_defined_assembly PISA 2 dimeric software_defined_assembly PISA 4 tetrameric 3230 -33 11650 8540 -76 21220 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 3_656 -x+1,y,-z+1 crystal symmetry operation 43.2390000000 0.0000000000 115.8740000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 2_655 -x+1,-y,z crystal symmetry operation 43.2390000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 4_556 x,-y,-z+1 crystal symmetry operation 0.0000000000 0.0000000000 115.8740000000 1 A SER -2 A SER 1 1 Y 1 A ASN -1 A ASN 2 1 Y 1 A ALA 0 A ALA 3 1 Y 1 A MET 1 A MET 4 1 Y 1 A ALA 2 A ALA 5 1 Y 1 A ARG 88 A ARG 91 1 Y 1 A ASP 89 A ASP 92 1 Y 1 A LYS 90 A LYS 93 1 Y 151.270 81.4788 45.600 1.6400 0.0000 0.0000 -5.4800 0.0000 3.8400 0.9420 0.9290 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : REFINED INDIVIDUALLY 0.2809 0.2458 0.2474 0.2474 2.3600 32.2700 278 5992 5992 4.6000 94.3300 1.000 1.000 9.5750 0.1970 RANDOM 1 THROUGHOUT 0.000 0 MOLECULAR REPLACEMENT 0.2870 0.2370 0.8000 0.8000 1.2000 PDB ENTRY 2Y0Y MAXIMUM LIKELIHOOD MASK 2.3600 32.2700 4 682 0 0 678 0.012 0.019 685 0.001 0.020 725 1.611 2.016 915 0.771 3.000 1672 6.362 5.000 84 34.974 23.200 25 20.520 15.000 148 11.195 15.000 5 0.070 0.200 109 0.005 0.020 726 0.001 0.020 141 0.3730 0.3580 2.4230 15 351 366 366 20 79.3900 68.7 2.36 32.3 4IYL 5992 5992 0 0 0.098 1.390 1 10.200 3.600 95.200 0.587 2.380 2.420 2.02 265 0.951 1 2.500 88.300 0.605 2.420 2.470 290 1.091 1 2.700 95.400 0.612 2.470 2.510 303 1.013 1 2.800 97.400 0.619 2.510 2.560 301 0.957 1 3.100 95.600 0.475 2.560 2.620 291 1.111 1 3.200 98.600 0.435 2.620 2.680 301 1.107 1 3.400 99.000 0.442 2.680 2.750 311 1.041 1 3.700 96.000 0.387 2.750 2.820 305 1.264 1 3.700 99.700 0.319 2.820 2.900 295 1.160 1 4.100 95.500 0.300 2.900 3.000 306 1.261 1 4.000 99.700 0.219 3.000 3.110 308 1.399 1 4.000 95.700 0.199 3.110 3.230 294 1.372 1 4.100 98.700 0.154 3.230 3.380 304 1.554 1 4.000 95.300 0.117 3.380 3.550 304 1.709 1 4.000 98.700 0.085 3.550 3.780 302 1.643 1 4.000 95.600 0.078 3.780 4.070 312 1.693 1 3.900 95.700 0.062 4.070 4.480 304 1.529 1 3.700 95.600 0.067 4.480 5.130 302 1.800 1 3.500 95.900 0.078 5.130 6.460 308 1.783 1 3.600 93.100 0.068 6.460 50.000 286 1.805 1 3.100 78.400 data reduction Zbyszek Otwinowski hkl@hkl-xray.com http://www.hkl-xray.com/ DENZO package data scaling Zbyszek Otwinowski hkl@hkl-xray.com http://www.hkl-xray.com/ SCALEPACK package refinement Garib N. Murshudov garib@ysbl.york.ac.uk Fortran_77 http://www.ccp4.ac.uk/dist/html/refmac5.html REFMAC program 5.7.0029 data extraction PDB deposit@deposit.rcsb.org April 22, 2011 C++ http://sw-tools.pdb.org/apps/PDB_EXTRACT/ PDB_EXTRACT package 3.11 data collection SBC-Collect data reduction HKL-3000 data scaling HKL-3000 phasing MOLREP phasing HKL-3000 30S ribosomal protein S15 from Campylobacter jejuni 1 N N 2 N N biological unit is the same as asymmetric unit, based on ribosome structure A ASP 4 A ASP 7 HELX_P A ALA 16 A ALA 19 1 1 13 A SER 24 A SER 27 HELX_P A SER 52 A SER 55 1 2 29 A GLY 55 A GLY 58 HELX_P A ASP 74 A ASP 77 1 3 20 A ASP 74 A ASP 77 HELX_P A LEU 85 A LEU 88 1 4 12 RIBOSOMAL PROTEIN structural genomics, Center for Structural Genomics of Infectious Diseases, CSGID, rRNA binding, translation, NIAID, National Institute of Allergy and Infectious Diseases, RIBOSOMAL PROTEIN RS15_CAMJE UNP 1 1 Q0PA13 MALDSAKKAEIVAKFAKKPGDTGSTEVQVALLTARIAELTEHLKIYKKDFSSRLGLLKLVGQRKRLLSYLKRKDYNSYSK LITELNLRDK 1 90 4IYL 1 90 Q0PA13 A 1 4 93 1 expression tag SER -2 4IYL A Q0PA13 UNP 1 1 expression tag ASN -1 4IYL A Q0PA13 UNP 2 1 expression tag ALA 0 4IYL A Q0PA13 UNP 3 23 I 2 2 2