data_4IZR # _entry.id 4IZR # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.280 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4IZR NDB NA2242 RCSB RCSB077414 WWPDB D_1000077414 # _pdbx_database_PDB_obs_spr.id OBSLTE _pdbx_database_PDB_obs_spr.date 2017-02-15 _pdbx_database_PDB_obs_spr.pdb_id 5LFS _pdbx_database_PDB_obs_spr.replace_pdb_id 4IZR _pdbx_database_PDB_obs_spr.details ? # _pdbx_database_status.status_code OBS _pdbx_database_status.entry_id 4IZR _pdbx_database_status.recvd_initial_deposition_date 2013-01-30 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf OBS _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Hall, J.P.' 1 'Cardin, C.J.' 2 # _citation.id primary _citation.title 'The effect of halogen substitution on the binding of polypyridyl ruthenium complexes to DNA' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Hall, J.P.' 1 primary 'Lincoln, P.' 2 primary 'Cardin, D.J.' 3 primary 'Cardin, C.J.' 4 # _cell.entry_id 4IZR _cell.length_a 66.887 _cell.length_b 66.887 _cell.length_c 36.019 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4IZR _symmetry.space_group_name_H-M 'P 64 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 181 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*(5BT)P*GP*GP*C)-3') ; 1190.734 1 ? ? ? ? 2 polymer syn ;DNA (5'-D(*GP*CP*CP*G)-3') ; 1191.818 1 ? ? ? ? 3 non-polymer syn 'Lambda-[Ru(bpy)2dppz]2+' 695.737 1 ? ? ? ? 4 non-polymer syn 'POTASSIUM ION' 39.098 2 ? ? ? ? 5 water nat water 18.015 32 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no yes '(5BT)(DG)(DG)(DC)' XGGC A ? 2 polydeoxyribonucleotide no no '(DG)(DC)(DC)(DG)' GCCG B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 5BT n 1 2 DG n 1 3 DG n 1 4 DC n 2 1 DG n 2 2 DC n 2 3 DC n 2 4 DG n # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample ? ? 'synthetic construct' ? 32630 'DNA Purchased from ATDBio' 2 1 sample ? ? 'synthetic construct' ? 32630 'DNA Purchased from ATDBio' # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_align_begin _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_db_isoform 1 PDB 4IZR 4IZR 1 ? XCCG ? 2 PDB 4IZR 4IZR 2 ? GCCG ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4IZR A 1 ? 4 ? 4IZR 1 ? 4 ? 1 4 2 2 4IZR B 1 ? 4 ? 4IZR 1 ? 4 ? 1 4 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 5BT non-polymer . "5-bromo-2'-deoxycytidine" "5-bromo-2'-doxy-D-cytidine" 'C9 H12 Br N3 O4' 306.113 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 HOH non-polymer . WATER ? 'H2 O' 18.015 K non-polymer . 'POTASSIUM ION' ? 'K 1' 39.098 RLB non-polymer . 'Lambda-[Ru(bpy)2dppz]2+' ? 'C38 H26 N8 Ru' 695.737 # _exptl.entry_id 4IZR _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 4.88 _exptl_crystal.density_percent_sol 74.80 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7 _exptl_crystal_grow.pdbx_details ;1ul 2mM DNA (single stranded), 1uL 4mM Lambda-[Ru(bpy)2(dppz)]2+, 6uL of 10% 2-methyl-2,4-pentanediol, 40mM sodium cacodylate, 12mM spermine, 80mM KCl, 20mM BaCl2. Equilibrated against 1ml 2-methyl-2,4-pentanediol, pH 7, VAPOR DIFFUSION, SITTING DROP, temperature 298K ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector PIXEL _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.pdbx_collection_date 2012-10-13 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si(111) dual crystal' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.7712 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'DIAMOND BEAMLINE I02' _diffrn_source.pdbx_synchrotron_site Diamond _diffrn_source.pdbx_synchrotron_beamline I02 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.7712 # _reflns.entry_id 4IZR _reflns.observed_criterion_sigma_I 2 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 28.96 _reflns.d_resolution_high 1.88 _reflns.number_obs 4179 _reflns.number_all 4179 _reflns.percent_possible_obs 99.6 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.88 _reflns_shell.d_res_low 1.93 _reflns_shell.percent_possible_all 94.9 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 4IZR _refine.ls_number_reflns_obs 3684 _refine.ls_number_reflns_all 3684 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 28.96 _refine.ls_d_res_high 1.88 _refine.ls_percent_reflns_obs 92.22 _refine.ls_R_factor_obs 0.20013 _refine.ls_R_factor_all 0.20310 _refine.ls_R_factor_R_work 0.20013 _refine.ls_R_factor_R_free 0.26216 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.6 _refine.ls_number_reflns_R_free 179 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.953 _refine.correlation_coeff_Fo_to_Fc_free 0.819 _refine.B_iso_mean 29.997 _refine.aniso_B[1][1] -2.65 _refine.aniso_B[2][2] -2.65 _refine.aniso_B[3][3] 8.60 _refine.aniso_B[1][2] -2.65 _refine.aniso_B[1][3] -0.00 _refine.aniso_B[2][3] -0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.117 _refine.pdbx_overall_ESU_R_Free 0.131 _refine.overall_SU_ML 0.089 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 3.072 _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 159 _refine_hist.pdbx_number_atoms_ligand 49 _refine_hist.number_atoms_solvent 32 _refine_hist.number_atoms_total 240 _refine_hist.d_res_high 1.88 _refine_hist.d_res_low 28.96 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 0.023 0.014 ? 235 ? 'X-RAY DIFFRACTION' r_bond_other_d 0.004 0.020 ? 119 ? 'X-RAY DIFFRACTION' r_angle_refined_deg 3.287 1.761 ? 367 ? 'X-RAY DIFFRACTION' r_angle_other_deg 2.793 3.000 ? 272 ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg ? ? ? ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg ? ? ? ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg ? ? ? ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg ? ? ? ? ? 'X-RAY DIFFRACTION' r_chiral_restr 0.592 0.200 ? 26 ? 'X-RAY DIFFRACTION' r_gen_planes_refined 0.023 0.020 ? 152 ? 'X-RAY DIFFRACTION' r_gen_planes_other 0.002 0.020 ? 68 ? 'X-RAY DIFFRACTION' r_nbd_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbd_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbtor_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbtor_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_xyhbond_nbd_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_xyhbond_nbd_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_metal_ion_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_metal_ion_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_vdw_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_vdw_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_hbond_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_hbond_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_metal_ion_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_metal_ion_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_mcbond_it ? ? ? ? ? 'X-RAY DIFFRACTION' r_mcbond_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_mcangle_it ? ? ? ? ? 'X-RAY DIFFRACTION' r_scbond_it ? ? ? ? ? 'X-RAY DIFFRACTION' r_scangle_it ? ? ? ? ? 'X-RAY DIFFRACTION' r_rigid_bond_restr ? ? ? ? ? 'X-RAY DIFFRACTION' r_sphericity_free ? ? ? ? ? 'X-RAY DIFFRACTION' r_sphericity_bonded ? ? ? ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.880 _refine_ls_shell.d_res_low 1.929 _refine_ls_shell.number_reflns_R_work 148 _refine_ls_shell.R_factor_R_work 0.291 _refine_ls_shell.percent_reflns_obs 50.66 _refine_ls_shell.R_factor_R_free 0.230 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 5 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 4IZR _struct.title 'Lambda-[Ru(bpy)2(dppz)]2+ with a short substituted DNA sequence' _struct.pdbx_descriptor ;5'-D(*(5BT)P*GP*GP*C)-3'/(5'-D(*GP*CP*CP*G)-3') complex ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4IZR _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'Porous, B-DNA, ruthenium, Lambda-Ru(bpy)2(dppz)]2+, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 5 ? G N N 5 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc1 metalc ? ? B DG 1 O6 ? ? ? 1_555 E K . K ? ? B DG 1 B K 101 1_555 ? ? ? ? ? ? ? 2.843 ? metalc2 metalc ? ? E K . K ? ? ? 1_555 F HOH . O ? ? B K 101 A HOH 216 1_555 ? ? ? ? ? ? ? 3.069 ? metalc3 metalc ? ? D K . K ? ? ? 1_555 F HOH . O ? ? A K 102 A HOH 205 1_555 ? ? ? ? ? ? ? 3.139 ? metalc4 metalc ? ? D K . K ? ? ? 1_555 F HOH . O ? ? A K 102 A HOH 209 1_555 ? ? ? ? ? ? ? 3.220 ? covale1 covale ? ? A 5BT 1 "O3'" ? ? ? 1_555 A DG 2 P ? ? A 5BT 1 A DG 2 1_555 ? ? ? ? ? ? ? 1.585 ? hydrog1 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 3 N3 ? ? A DG 2 B DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog2 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 3 O2 ? ? A DG 2 B DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog3 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 3 N4 ? ? A DG 2 B DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog4 hydrog ? ? A DG 3 N1 ? ? ? 1_555 B DC 2 N3 ? ? A DG 3 B DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog5 hydrog ? ? A DG 3 N2 ? ? ? 1_555 B DC 2 O2 ? ? A DG 3 B DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog6 hydrog ? ? A DG 3 O6 ? ? ? 1_555 B DC 2 N4 ? ? A DG 3 B DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog7 hydrog ? ? A DC 4 N3 ? ? ? 1_555 B DG 1 N1 ? ? A DC 4 B DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog8 hydrog ? ? A DC 4 N4 ? ? ? 1_555 B DG 1 O6 ? ? A DC 4 B DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog9 hydrog ? ? A DC 4 O2 ? ? ? 1_555 B DG 1 N2 ? ? A DC 4 B DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? covale ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 8 'BINDING SITE FOR RESIDUE RLB A 101' AC2 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE K B 101' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 8 5BT A 1 ? 5BT A 1 . ? 4_455 ? 2 AC1 8 5BT A 1 ? 5BT A 1 . ? 1_555 ? 3 AC1 8 DG A 2 ? DG A 2 . ? 1_555 ? 4 AC1 8 DG A 3 ? DG A 3 . ? 1_555 ? 5 AC1 8 DG A 3 ? DG A 3 . ? 11_455 ? 6 AC1 8 HOH F . ? HOH A 202 . ? 1_555 ? 7 AC1 8 DC B 3 ? DC B 3 . ? 1_555 ? 8 AC1 8 DG B 4 ? DG B 4 . ? 1_555 ? 9 AC2 2 HOH F . ? HOH A 216 . ? 1_555 ? 10 AC2 2 DG B 1 ? DG B 1 . ? 1_555 ? # _database_PDB_matrix.entry_id 4IZR _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4IZR _atom_sites.fract_transf_matrix[1][1] 0.014951 _atom_sites.fract_transf_matrix[1][2] 0.008632 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017263 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.027763 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol BR C K N O P RU # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_alt_id _atom_site.label_comp_id _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.label_seq_id _atom_site.pdbx_PDB_ins_code _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_seq_id _atom_site.auth_comp_id _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 . 5BT A 1 1 ? -29.404 0.429 8.285 1.00 30.23 ? 1 5BT A N1 1 HETATM 2 C C2 . 5BT A 1 1 ? -30.726 0.865 8.338 1.00 27.56 ? 1 5BT A C2 1 HETATM 3 O O2 . 5BT A 1 1 ? -31.345 1.063 7.278 1.00 29.92 ? 1 5BT A O2 1 HETATM 4 N N3 . 5BT A 1 1 ? -31.336 1.089 9.537 1.00 31.18 ? 1 5BT A N3 1 HETATM 5 C C4 . 5BT A 1 1 ? -30.700 0.882 10.717 1.00 28.80 ? 1 5BT A C4 1 HETATM 6 N N4 . 5BT A 1 1 ? -31.375 1.109 11.875 1.00 32.41 ? 1 5BT A N4 1 HETATM 7 C C5 . 5BT A 1 1 ? -29.305 0.427 10.682 1.00 32.47 ? 1 5BT A C5 1 HETATM 8 BR BR5 . 5BT A 1 1 ? -28.242 0.096 12.247 1.00 40.70 ? 1 5BT A BR5 1 HETATM 9 C C6 . 5BT A 1 1 ? -28.718 0.222 9.422 1.00 30.94 ? 1 5BT A C6 1 HETATM 10 C "C1'" . 5BT A 1 1 ? -28.779 0.183 6.968 1.00 30.03 ? 1 5BT A "C1'" 1 HETATM 11 C "C2'" . 5BT A 1 1 ? -28.386 1.454 6.218 1.00 29.16 ? 1 5BT A "C2'" 1 HETATM 12 C "C3'" . 5BT A 1 1 ? -27.024 1.116 5.664 1.00 30.93 ? 1 5BT A "C3'" 1 HETATM 13 O "O3'" . 5BT A 1 1 ? -27.223 0.602 4.357 1.00 30.60 ? 1 5BT A "O3'" 1 HETATM 14 C "C4'" . 5BT A 1 1 ? -26.457 -0.006 6.524 1.00 33.86 ? 1 5BT A "C4'" 1 HETATM 15 O "O4'" . 5BT A 1 1 ? -27.585 -0.548 7.226 1.00 30.94 ? 1 5BT A "O4'" 1 HETATM 16 C "C5'" . 5BT A 1 1 ? -25.319 0.402 7.459 1.00 37.45 ? 1 5BT A "C5'" 1 HETATM 17 O "O5'" . 5BT A 1 1 ? -25.869 0.800 8.685 1.00 38.52 ? 1 5BT A "O5'" 1 ATOM 18 P P . DG A 1 2 ? -26.031 0.534 3.314 1.00 33.82 ? 2 DG A P 1 ATOM 19 O OP1 . DG A 1 2 ? -26.447 -0.354 2.209 1.00 33.22 ? 2 DG A OP1 1 ATOM 20 O OP2 . DG A 1 2 ? -24.755 0.405 4.058 1.00 32.55 ? 2 DG A OP2 1 ATOM 21 O "O5'" . DG A 1 2 ? -26.030 1.975 2.634 1.00 35.54 ? 2 DG A "O5'" 1 ATOM 22 C "C5'" . DG A 1 2 ? -27.152 2.452 1.890 1.00 33.26 ? 2 DG A "C5'" 1 ATOM 23 C "C4'" . DG A 1 2 ? -27.124 3.965 1.864 1.00 31.30 ? 2 DG A "C4'" 1 ATOM 24 O "O4'" . DG A 1 2 ? -27.409 4.496 3.180 1.00 31.73 ? 2 DG A "O4'" 1 ATOM 25 C "C3'" . DG A 1 2 ? -25.786 4.578 1.456 1.00 31.91 ? 2 DG A "C3'" 1 ATOM 26 O "O3'" . DG A 1 2 ? -26.115 5.699 0.642 1.00 33.30 ? 2 DG A "O3'" 1 ATOM 27 C "C2'" . DG A 1 2 ? -25.180 5.038 2.770 1.00 31.61 ? 2 DG A "C2'" 1 ATOM 28 C "C1'" . DG A 1 2 ? -26.434 5.481 3.492 1.00 30.98 ? 2 DG A "C1'" 1 ATOM 29 N N9 . DG A 1 2 ? -26.341 5.574 4.941 1.00 28.66 ? 2 DG A N9 1 ATOM 30 C C8 . DG A 1 2 ? -25.379 5.021 5.750 1.00 30.46 ? 2 DG A C8 1 ATOM 31 N N7 . DG A 1 2 ? -25.595 5.234 7.021 1.00 28.01 ? 2 DG A N7 1 ATOM 32 C C5 . DG A 1 2 ? -26.771 5.969 7.053 1.00 29.32 ? 2 DG A C5 1 ATOM 33 C C6 . DG A 1 2 ? -27.492 6.502 8.153 1.00 27.09 ? 2 DG A C6 1 ATOM 34 O O6 . DG A 1 2 ? -27.213 6.445 9.362 1.00 32.90 ? 2 DG A O6 1 ATOM 35 N N1 . DG A 1 2 ? -28.632 7.178 7.737 1.00 27.15 ? 2 DG A N1 1 ATOM 36 C C2 . DG A 1 2 ? -29.052 7.297 6.430 1.00 25.11 ? 2 DG A C2 1 ATOM 37 N N2 . DG A 1 2 ? -30.198 7.971 6.232 1.00 24.13 ? 2 DG A N2 1 ATOM 38 N N3 . DG A 1 2 ? -28.374 6.831 5.395 1.00 24.74 ? 2 DG A N3 1 ATOM 39 C C4 . DG A 1 2 ? -27.260 6.165 5.778 1.00 26.77 ? 2 DG A C4 1 ATOM 40 P P . DG A 1 3 ? -25.264 6.031 -0.635 1.00 35.96 ? 3 DG A P 1 ATOM 41 O OP1 . DG A 1 3 ? -25.195 4.845 -1.463 1.00 40.14 ? 3 DG A OP1 1 ATOM 42 O OP2 . DG A 1 3 ? -23.999 6.605 -0.147 1.00 38.16 ? 3 DG A OP2 1 ATOM 43 O "O5'" . DG A 1 3 ? -26.163 7.136 -1.326 1.00 32.50 ? 3 DG A "O5'" 1 ATOM 44 C "C5'" . DG A 1 3 ? -27.566 6.939 -1.540 1.00 29.79 ? 3 DG A "C5'" 1 ATOM 45 C "C4'" . DG A 1 3 ? -28.324 8.210 -1.238 1.00 29.49 ? 3 DG A "C4'" 1 ATOM 46 O "O4'" . DG A 1 3 ? -28.379 8.429 0.190 1.00 27.49 ? 3 DG A "O4'" 1 ATOM 47 C "C3'" . DG A 1 3 ? -27.727 9.485 -1.836 1.00 28.34 ? 3 DG A "C3'" 1 ATOM 48 O "O3'" . DG A 1 3 ? -28.807 10.211 -2.388 1.00 27.86 ? 3 DG A "O3'" 1 ATOM 49 C "C2'" . DG A 1 3 ? -27.018 10.135 -0.658 1.00 26.77 ? 3 DG A "C2'" 1 ATOM 50 C "C1'" . DG A 1 3 ? -27.843 9.699 0.537 1.00 29.35 ? 3 DG A "C1'" 1 ATOM 51 N N9 . DG A 1 3 ? -27.104 9.533 1.784 1.00 25.72 ? 3 DG A N9 1 ATOM 52 C C8 . DG A 1 3 ? -25.872 8.944 1.948 1.00 26.88 ? 3 DG A C8 1 ATOM 53 N N7 . DG A 1 3 ? -25.480 8.917 3.196 1.00 26.52 ? 3 DG A N7 1 ATOM 54 C C5 . DG A 1 3 ? -26.528 9.494 3.898 1.00 26.31 ? 3 DG A C5 1 ATOM 55 C C6 . DG A 1 3 ? -26.700 9.686 5.293 1.00 27.11 ? 3 DG A C6 1 ATOM 56 O O6 . DG A 1 3 ? -25.946 9.351 6.212 1.00 27.54 ? 3 DG A O6 1 ATOM 57 N N1 . DG A 1 3 ? -27.915 10.293 5.580 1.00 25.52 ? 3 DG A N1 1 ATOM 58 C C2 . DG A 1 3 ? -28.854 10.658 4.651 1.00 24.12 ? 3 DG A C2 1 ATOM 59 N N2 . DG A 1 3 ? -29.955 11.225 5.131 1.00 22.76 ? 3 DG A N2 1 ATOM 60 N N3 . DG A 1 3 ? -28.724 10.457 3.346 1.00 24.41 ? 3 DG A N3 1 ATOM 61 C C4 . DG A 1 3 ? -27.553 9.850 3.047 1.00 26.37 ? 3 DG A C4 1 ATOM 62 P P . DC A 1 4 ? -28.595 11.650 -3.026 1.00 26.47 ? 4 DC A P 1 ATOM 63 O OP1 . DC A 1 4 ? -29.756 11.929 -3.905 1.00 27.47 ? 4 DC A OP1 1 ATOM 64 O OP2 . DC A 1 4 ? -27.199 11.756 -3.420 1.00 27.14 ? 4 DC A OP2 1 ATOM 65 O "O5'" . DC A 1 4 ? -28.756 12.650 -1.786 1.00 27.58 ? 4 DC A "O5'" 1 ATOM 66 C "C5'" . DC A 1 4 ? -30.057 12.901 -1.242 1.00 27.51 ? 4 DC A "C5'" 1 ATOM 67 C "C4'" . DC A 1 4 ? -29.977 13.733 0.023 1.00 28.31 ? 4 DC A "C4'" 1 ATOM 68 O "O4'" . DC A 1 4 ? -29.248 13.008 1.030 1.00 28.82 ? 4 DC A "O4'" 1 ATOM 69 C "C3'" . DC A 1 4 ? -29.218 15.045 -0.124 1.00 29.07 ? 4 DC A "C3'" 1 ATOM 70 O "O3'" . DC A 1 4 ? -30.058 16.080 -0.624 1.00 30.97 ? 4 DC A "O3'" 1 ATOM 71 C "C2'" . DC A 1 4 ? -28.690 15.315 1.277 1.00 31.56 ? 4 DC A "C2'" 1 ATOM 72 C "C1'" . DC A 1 4 ? -28.758 13.957 1.979 1.00 28.61 ? 4 DC A "C1'" 1 ATOM 73 N N1 . DC A 1 4 ? -27.487 13.448 2.524 1.00 28.88 ? 4 DC A N1 1 ATOM 74 C C2 . DC A 1 4 ? -27.271 13.554 3.897 1.00 26.23 ? 4 DC A C2 1 ATOM 75 O O2 . DC A 1 4 ? -28.149 14.080 4.600 1.00 27.08 ? 4 DC A O2 1 ATOM 76 N N3 . DC A 1 4 ? -26.132 13.053 4.428 1.00 26.94 ? 4 DC A N3 1 ATOM 77 C C4 . DC A 1 4 ? -25.201 12.525 3.631 1.00 26.70 ? 4 DC A C4 1 ATOM 78 N N4 . DC A 1 4 ? -24.093 12.051 4.195 1.00 29.02 ? 4 DC A N4 1 ATOM 79 C C5 . DC A 1 4 ? -25.380 12.436 2.223 1.00 26.56 ? 4 DC A C5 1 ATOM 80 C C6 . DC A 1 4 ? -26.527 12.906 1.714 1.00 29.35 ? 4 DC A C6 1 ATOM 81 O "O5'" . DG B 2 1 ? -23.218 15.270 14.106 1.00 41.05 ? 1 DG B "O5'" 1 ATOM 82 C "C5'" . DG B 2 1 ? -24.155 14.357 14.681 1.00 38.58 ? 1 DG B "C5'" 1 ATOM 83 C "C4'" . DG B 2 1 ? -25.547 14.792 14.303 1.00 37.73 ? 1 DG B "C4'" 1 ATOM 84 O "O4'" . DG B 2 1 ? -25.630 14.905 12.862 1.00 37.86 ? 1 DG B "O4'" 1 ATOM 85 C "C3'" . DG B 2 1 ? -26.646 13.810 14.675 1.00 36.78 ? 1 DG B "C3'" 1 ATOM 86 O "O3'" . DG B 2 1 ? -27.835 14.603 14.790 1.00 36.79 ? 1 DG B "O3'" 1 ATOM 87 C "C2'" . DG B 2 1 ? -26.612 12.845 13.502 1.00 38.87 ? 1 DG B "C2'" 1 ATOM 88 C "C1'" . DG B 2 1 ? -26.340 13.778 12.321 1.00 37.00 ? 1 DG B "C1'" 1 ATOM 89 N N9 . DG B 2 1 ? -25.546 13.212 11.225 1.00 34.15 ? 1 DG B N9 1 ATOM 90 C C8 . DG B 2 1 ? -24.372 12.503 11.325 1.00 31.15 ? 1 DG B C8 1 ATOM 91 N N7 . DG B 2 1 ? -23.909 12.115 10.169 1.00 32.66 ? 1 DG B N7 1 ATOM 92 C C5 . DG B 2 1 ? -24.840 12.581 9.250 1.00 28.91 ? 1 DG B C5 1 ATOM 93 C C6 . DG B 2 1 ? -24.871 12.470 7.831 1.00 28.59 ? 1 DG B C6 1 ATOM 94 O O6 . DG B 2 1 ? -24.047 11.934 7.082 1.00 31.13 ? 1 DG B O6 1 ATOM 95 N N1 . DG B 2 1 ? -25.985 13.102 7.292 1.00 26.65 ? 1 DG B N1 1 ATOM 96 C C2 . DG B 2 1 ? -26.955 13.745 8.016 1.00 27.58 ? 1 DG B C2 1 ATOM 97 N N2 . DG B 2 1 ? -27.971 14.269 7.314 1.00 26.56 ? 1 DG B N2 1 ATOM 98 N N3 . DG B 2 1 ? -26.939 13.857 9.337 1.00 32.08 ? 1 DG B N3 1 ATOM 99 C C4 . DG B 2 1 ? -25.859 13.253 9.884 1.00 29.91 ? 1 DG B C4 1 ATOM 100 P P . DC B 2 2 ? -29.193 13.945 15.184 1.00 38.80 ? 2 DC B P 1 ATOM 101 O OP1 . DC B 2 2 ? -30.017 14.914 15.951 1.00 36.24 ? 2 DC B OP1 1 ATOM 102 O OP2 . DC B 2 2 ? -28.883 12.599 15.643 1.00 36.60 ? 2 DC B OP2 1 ATOM 103 O "O5'" . DC B 2 2 ? -29.966 13.823 13.791 1.00 34.26 ? 2 DC B "O5'" 1 ATOM 104 C "C5'" . DC B 2 2 ? -30.536 14.960 13.137 1.00 31.09 ? 2 DC B "C5'" 1 ATOM 105 C "C4'" . DC B 2 2 ? -31.275 14.494 11.905 1.00 30.35 ? 2 DC B "C4'" 1 ATOM 106 O "O4'" . DC B 2 2 ? -30.343 13.807 11.051 1.00 31.84 ? 2 DC B "O4'" 1 ATOM 107 C "C3'" . DC B 2 2 ? -32.392 13.496 12.201 1.00 29.33 ? 2 DC B "C3'" 1 ATOM 108 O "O3'" . DC B 2 2 ? -33.551 14.060 11.590 1.00 30.63 ? 2 DC B "O3'" 1 ATOM 109 C "C2'" . DC B 2 2 ? -31.880 12.180 11.631 1.00 31.08 ? 2 DC B "C2'" 1 ATOM 110 C "C1'" . DC B 2 2 ? -30.948 12.641 10.532 1.00 30.37 ? 2 DC B "C1'" 1 ATOM 111 N N1 . DC B 2 2 ? -29.856 11.746 10.169 1.00 29.07 ? 2 DC B N1 1 ATOM 112 C C2 . DC B 2 2 ? -29.645 11.398 8.822 1.00 27.71 ? 2 DC B C2 1 ATOM 113 O O2 . DC B 2 2 ? -30.482 11.746 7.962 1.00 27.85 ? 2 DC B O2 1 ATOM 114 N N3 . DC B 2 2 ? -28.549 10.680 8.498 1.00 27.43 ? 2 DC B N3 1 ATOM 115 C C4 . DC B 2 2 ? -27.692 10.305 9.449 1.00 27.02 ? 2 DC B C4 1 ATOM 116 N N4 . DC B 2 2 ? -26.633 9.593 9.087 1.00 26.78 ? 2 DC B N4 1 ATOM 117 C C5 . DC B 2 2 ? -27.877 10.660 10.818 1.00 28.50 ? 2 DC B C5 1 ATOM 118 C C6 . DC B 2 2 ? -28.941 11.400 11.122 1.00 27.38 ? 2 DC B C6 1 ATOM 119 P P . DC B 2 3 ? -34.961 13.664 12.032 1.00 34.74 ? 3 DC B P 1 ATOM 120 O OP1 . DC B 2 3 ? -35.905 14.650 11.479 1.00 35.35 ? 3 DC B OP1 1 ATOM 121 O OP2 . DC B 2 3 ? -34.916 13.429 13.493 1.00 32.31 ? 3 DC B OP2 1 ATOM 122 O "O5'" . DC B 2 3 ? -35.166 12.244 11.342 1.00 34.89 ? 3 DC B "O5'" 1 ATOM 123 C "C5'" . DC B 2 3 ? -35.448 12.134 9.936 1.00 32.81 ? 3 DC B "C5'" 1 ATOM 124 C "C4'" . DC B 2 3 ? -35.323 10.686 9.544 1.00 30.93 ? 3 DC B "C4'" 1 ATOM 125 O "O4'" . DC B 2 3 ? -33.937 10.279 9.657 1.00 28.76 ? 3 DC B "O4'" 1 ATOM 126 C "C3'" . DC B 2 3 ? -36.119 9.736 10.445 1.00 33.03 ? 3 DC B "C3'" 1 ATOM 127 O "O3'" . DC B 2 3 ? -36.934 8.888 9.639 1.00 35.56 ? 3 DC B "O3'" 1 ATOM 128 C "C2'" . DC B 2 3 ? -35.045 8.961 11.179 1.00 31.15 ? 3 DC B "C2'" 1 ATOM 129 C "C1'" . DC B 2 3 ? -33.950 8.958 10.126 1.00 31.31 ? 3 DC B "C1'" 1 ATOM 130 N N1 . DC B 2 3 ? -32.586 8.594 10.553 1.00 29.53 ? 3 DC B N1 1 ATOM 131 C C2 . DC B 2 3 ? -31.648 8.206 9.588 1.00 29.37 ? 3 DC B C2 1 ATOM 132 O O2 . DC B 2 3 ? -31.967 8.225 8.381 1.00 28.29 ? 3 DC B O2 1 ATOM 133 N N3 . DC B 2 3 ? -30.406 7.867 9.982 1.00 29.40 ? 3 DC B N3 1 ATOM 134 C C4 . DC B 2 3 ? -30.089 7.875 11.276 1.00 26.36 ? 3 DC B C4 1 ATOM 135 N N4 . DC B 2 3 ? -28.874 7.473 11.613 1.00 24.42 ? 3 DC B N4 1 ATOM 136 C C5 . DC B 2 3 ? -31.031 8.229 12.280 1.00 29.69 ? 3 DC B C5 1 ATOM 137 C C6 . DC B 2 3 ? -32.256 8.579 11.880 1.00 31.15 ? 3 DC B C6 1 ATOM 138 P P . DG B 2 4 ? -38.466 9.190 9.432 1.00 43.15 ? 4 DG B P 1 ATOM 139 O OP1 . DG B 2 4 ? -38.607 10.206 8.354 1.00 42.31 ? 4 DG B OP1 1 ATOM 140 O OP2 . DG B 2 4 ? -39.070 9.420 10.760 1.00 38.63 ? 4 DG B OP2 1 ATOM 141 O "O5'" . DG B 2 4 ? -39.012 7.823 8.812 1.00 35.24 ? 4 DG B "O5'" 1 ATOM 142 C "C5'" . DG B 2 4 ? -39.297 6.676 9.611 1.00 32.16 ? 4 DG B "C5'" 1 ATOM 143 C "C4'" . DG B 2 4 ? -39.799 5.572 8.712 1.00 29.52 ? 4 DG B "C4'" 1 ATOM 144 O "O4'" . DG B 2 4 ? -38.646 4.846 8.238 1.00 30.41 ? 4 DG B "O4'" 1 ATOM 145 C "C3'" . DG B 2 4 ? -40.709 4.552 9.401 1.00 29.42 ? 4 DG B "C3'" 1 ATOM 146 O "O3'" . DG B 2 4 ? -42.035 4.804 8.972 1.00 32.14 ? 4 DG B "O3'" 1 ATOM 147 C "C2'" . DG B 2 4 ? -40.221 3.202 8.898 1.00 29.61 ? 4 DG B "C2'" 1 ATOM 148 C "C1'" . DG B 2 4 ? -38.759 3.455 8.542 1.00 29.04 ? 4 DG B "C1'" 1 ATOM 149 N N9 . DG B 2 4 ? -37.784 3.150 9.577 1.00 31.75 ? 4 DG B N9 1 ATOM 150 C C8 . DG B 2 4 ? -37.953 3.273 10.937 1.00 30.97 ? 4 DG B C8 1 ATOM 151 N N7 . DG B 2 4 ? -36.881 2.968 11.616 1.00 30.85 ? 4 DG B N7 1 ATOM 152 C C5 . DG B 2 4 ? -35.945 2.629 10.648 1.00 30.75 ? 4 DG B C5 1 ATOM 153 C C6 . DG B 2 4 ? -34.603 2.192 10.781 1.00 28.13 ? 4 DG B C6 1 ATOM 154 O O6 . DG B 2 4 ? -33.937 2.036 11.812 1.00 28.96 ? 4 DG B O6 1 ATOM 155 N N1 . DG B 2 4 ? -34.016 1.961 9.540 1.00 28.99 ? 4 DG B N1 1 ATOM 156 C C2 . DG B 2 4 ? -34.638 2.132 8.327 1.00 26.86 ? 4 DG B C2 1 ATOM 157 N N2 . DG B 2 4 ? -33.906 1.842 7.248 1.00 29.10 ? 4 DG B N2 1 ATOM 158 N N3 . DG B 2 4 ? -35.904 2.489 8.190 1.00 27.16 ? 4 DG B N3 1 ATOM 159 C C4 . DG B 2 4 ? -36.491 2.730 9.383 1.00 30.51 ? 4 DG B C4 1 HETATM 160 RU RU1 . RLB C 3 . ? -35.098 6.325 4.976 1.00 26.31 ? 101 RLB A RU1 1 HETATM 161 N N7 . RLB C 3 . ? -35.203 6.680 3.044 1.00 25.68 ? 101 RLB A N7 1 HETATM 162 C C29 . RLB C 3 . ? -35.584 5.893 2.019 1.00 28.52 ? 101 RLB A C29 1 HETATM 163 C C30 . RLB C 3 . ? -35.555 6.374 0.686 1.00 26.33 ? 101 RLB A C30 1 HETATM 164 C C31 . RLB C 3 . ? -35.175 7.700 0.384 1.00 25.61 ? 101 RLB A C31 1 HETATM 165 C C32 . RLB C 3 . ? -34.730 8.519 1.423 1.00 25.28 ? 101 RLB A C32 1 HETATM 166 C C33 . RLB C 3 . ? -34.777 7.996 2.752 1.00 25.68 ? 101 RLB A C33 1 HETATM 167 C C34 . RLB C 3 . ? -34.333 8.713 3.915 1.00 27.65 ? 101 RLB A C34 1 HETATM 168 N N8 . RLB C 3 . ? -34.337 8.038 5.126 1.00 26.94 ? 101 RLB A N8 1 HETATM 169 C C38 . RLB C 3 . ? -33.974 8.807 6.203 1.00 26.36 ? 101 RLB A C38 1 HETATM 170 C C37 . RLB C 3 . ? -33.527 10.124 6.124 1.00 27.50 ? 101 RLB A C37 1 HETATM 171 C C36 . RLB C 3 . ? -33.481 10.788 4.904 1.00 24.91 ? 101 RLB A C36 1 HETATM 172 C C35 . RLB C 3 . ? -33.918 10.046 3.807 1.00 27.98 ? 101 RLB A C35 1 HETATM 173 N N6 . RLB C 3 . ? -36.781 7.037 5.092 1.00 26.72 ? 101 RLB A N6 1 HETATM 174 C C28 . RLB C 3 . ? -37.349 8.345 5.068 1.00 29.68 ? 101 RLB A C28 1 HETATM 175 C C27 . RLB C 3 . ? -38.735 8.513 5.215 1.00 31.44 ? 101 RLB A C27 1 HETATM 176 C C26 . RLB C 3 . ? -39.647 7.468 5.178 1.00 30.50 ? 101 RLB A C26 1 HETATM 177 C C25 . RLB C 3 . ? -39.172 6.191 5.046 1.00 29.52 ? 101 RLB A C25 1 HETATM 178 C C24 . RLB C 3 . ? -37.778 6.012 4.978 1.00 28.53 ? 101 RLB A C24 1 HETATM 179 C C23 . RLB C 3 . ? -37.243 4.653 4.850 1.00 29.74 ? 101 RLB A C23 1 HETATM 180 N N5 . RLB C 3 . ? -35.901 4.617 4.779 1.00 28.32 ? 101 RLB A N5 1 HETATM 181 C C19 . RLB C 3 . ? -35.382 3.375 4.472 1.00 27.37 ? 101 RLB A C19 1 HETATM 182 C C20 . RLB C 3 . ? -36.168 2.208 4.385 1.00 26.37 ? 101 RLB A C20 1 HETATM 183 C C21 . RLB C 3 . ? -37.548 2.296 4.486 1.00 26.62 ? 101 RLB A C21 1 HETATM 184 C C22 . RLB C 3 . ? -38.094 3.538 4.711 1.00 30.31 ? 101 RLB A C22 1 HETATM 185 C C10 . RLB C 3 . ? -30.132 4.130 12.006 1.00 33.70 ? 101 RLB A C10 1 HETATM 186 C C11 . RLB C 3 . ? -30.436 4.280 10.628 1.00 30.39 ? 101 RLB A C11 1 HETATM 187 N N4 . RLB C 3 . ? -31.662 4.708 10.260 1.00 31.88 ? 101 RLB A N4 1 HETATM 188 C C12 . RLB C 3 . ? -32.016 4.860 8.960 1.00 27.05 ? 101 RLB A C12 1 HETATM 189 C C1 . RLB C 3 . ? -33.285 5.330 8.634 1.00 25.59 ? 101 RLB A C1 1 HETATM 190 C C13 . RLB C 3 . ? -34.263 5.573 9.724 1.00 25.73 ? 101 RLB A C13 1 HETATM 191 C C14 . RLB C 3 . ? -35.634 5.998 9.280 1.00 23.69 ? 101 RLB A C14 1 HETATM 192 C C15 . RLB C 3 . ? -35.860 6.197 7.759 1.00 25.34 ? 101 RLB A C15 1 HETATM 193 N N1 . RLB C 3 . ? -34.947 5.996 6.895 1.00 26.59 ? 101 RLB A N1 1 HETATM 194 C C2 . RLB C 3 . ? -33.710 5.547 7.312 1.00 26.41 ? 101 RLB A C2 1 HETATM 195 C C3 . RLB C 3 . ? -32.811 5.361 6.265 1.00 27.80 ? 101 RLB A C3 1 HETATM 196 C C9 . RLB C 3 . ? -28.866 3.705 12.387 1.00 31.01 ? 101 RLB A C9 1 HETATM 197 C C8 . RLB C 3 . ? -27.917 3.441 11.422 1.00 35.98 ? 101 RLB A C8 1 HETATM 198 C C7 . RLB C 3 . ? -28.231 3.604 10.066 1.00 32.60 ? 101 RLB A C7 1 HETATM 199 C C6 . RLB C 3 . ? -29.487 4.024 9.646 1.00 29.60 ? 101 RLB A C6 1 HETATM 200 N N3 . RLB C 3 . ? -29.834 4.173 8.304 1.00 29.18 ? 101 RLB A N3 1 HETATM 201 C C5 . RLB C 3 . ? -31.093 4.610 7.942 1.00 27.11 ? 101 RLB A C5 1 HETATM 202 C C4 . RLB C 3 . ? -31.538 4.830 6.598 1.00 28.27 ? 101 RLB A C4 1 HETATM 203 C C18 . RLB C 3 . ? -30.664 4.570 5.548 1.00 28.24 ? 101 RLB A C18 1 HETATM 204 C C17 . RLB C 3 . ? -31.128 4.809 4.241 1.00 27.72 ? 101 RLB A C17 1 HETATM 205 C C16 . RLB C 3 . ? -32.382 5.361 3.928 1.00 26.07 ? 101 RLB A C16 1 HETATM 206 N N2 . RLB C 3 . ? -33.411 5.559 4.911 1.00 26.11 ? 101 RLB A N2 1 HETATM 207 K K . K D 4 . ? -33.443 11.890 0.000 0.50 32.81 ? 102 K A K 1 HETATM 208 K K . K E 4 . ? -21.621 10.958 8.198 1.00 56.70 ? 101 K B K 1 HETATM 209 O O . HOH F 5 . ? -25.290 5.987 11.095 1.00 37.66 ? 201 HOH A O 1 HETATM 210 O O . HOH F 5 . ? -31.430 8.169 3.411 1.00 24.57 ? 202 HOH A O 1 HETATM 211 O O . HOH F 5 . ? -29.383 6.700 2.178 1.00 29.17 ? 203 HOH A O 1 HETATM 212 O O . HOH F 5 . ? -30.094 11.453 -6.486 1.00 31.43 ? 204 HOH A O 1 HETATM 213 O O . HOH F 5 . ? -33.200 13.884 2.412 1.00 27.18 ? 205 HOH A O 1 HETATM 214 O O . HOH F 5 . ? -37.549 3.346 1.097 1.00 30.06 ? 206 HOH A O 1 HETATM 215 O O . HOH F 5 . ? -23.115 2.543 4.614 1.00 36.17 ? 207 HOH A O 1 HETATM 216 O O . HOH F 5 . ? -24.868 0.000 0.000 0.50 34.36 ? 208 HOH A O 1 HETATM 217 O O . HOH F 5 . ? -31.228 10.636 1.973 1.00 31.48 ? 209 HOH A O 1 HETATM 218 O O . HOH F 5 . ? -30.654 1.385 2.660 1.00 30.82 ? 210 HOH A O 1 HETATM 219 O O . HOH F 5 . ? -22.972 2.042 0.071 1.00 36.33 ? 211 HOH A O 1 HETATM 220 O O . HOH F 5 . ? -29.037 -0.457 1.303 1.00 27.84 ? 212 HOH A O 1 HETATM 221 O O . HOH F 5 . ? -31.362 13.960 4.524 1.00 32.41 ? 213 HOH A O 1 HETATM 222 O O . HOH F 5 . ? -26.831 3.220 -1.660 1.00 40.84 ? 214 HOH A O 1 HETATM 223 O O . HOH F 5 . ? -22.761 3.357 -1.986 1.00 39.86 ? 215 HOH A O 1 HETATM 224 O O . HOH F 5 . ? -23.307 8.635 7.111 1.00 41.92 ? 216 HOH A O 1 HETATM 225 O O . HOH F 5 . ? -31.428 13.847 -4.386 1.00 33.13 ? 217 HOH A O 1 HETATM 226 O O . HOH F 5 . ? -30.634 3.813 1.155 1.00 41.73 ? 218 HOH A O 1 HETATM 227 O O . HOH F 5 . ? -22.075 10.965 2.486 1.00 42.60 ? 219 HOH A O 1 HETATM 228 O O . HOH G 5 . ? -32.055 13.596 7.023 1.00 28.62 ? 201 HOH B O 1 HETATM 229 O O . HOH G 5 . ? -34.452 -1.014 4.715 1.00 31.07 ? 202 HOH B O 1 HETATM 230 O O . HOH G 5 . ? -30.405 15.752 8.682 1.00 37.21 ? 203 HOH B O 1 HETATM 231 O O . HOH G 5 . ? -31.893 18.669 18.149 1.00 56.76 ? 204 HOH B O 1 HETATM 232 O O . HOH G 5 . ? -24.822 8.770 11.079 1.00 33.08 ? 205 HOH B O 1 HETATM 233 O O . HOH G 5 . ? -21.334 14.480 12.387 1.00 48.46 ? 206 HOH B O 1 HETATM 234 O O . HOH G 5 . ? -29.136 17.957 15.330 1.00 37.67 ? 207 HOH B O 1 HETATM 235 O O . HOH G 5 . ? -25.583 16.109 17.474 1.00 47.01 ? 208 HOH B O 1 HETATM 236 O O . HOH G 5 . ? -29.735 10.491 14.635 1.00 43.50 ? 209 HOH B O 1 HETATM 237 O O . HOH G 5 . ? -30.103 17.000 20.240 1.00 50.75 ? 210 HOH B O 1 HETATM 238 O O . HOH G 5 . ? -34.886 13.456 6.933 1.00 34.24 ? 211 HOH B O 1 HETATM 239 O O . HOH G 5 . ? -29.061 17.628 7.351 1.00 40.01 ? 212 HOH B O 1 HETATM 240 O O . HOH G 5 . ? -36.720 2.826 14.349 1.00 45.40 ? 213 HOH B O 1 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 5BT 1 1 1 5BT 5BT A . n A 1 2 DG 2 2 2 DG DG A . n A 1 3 DG 3 3 3 DG DG A . n A 1 4 DC 4 4 4 DC DC A . n B 2 1 DG 1 1 1 DG DG B . n B 2 2 DC 2 2 2 DC DC B . n B 2 3 DC 3 3 3 DC DC B . n B 2 4 DG 4 4 4 DG DG B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 RLB 1 101 2 RLB R1Z A . D 4 K 1 102 1 K K A . E 4 K 1 101 2 K K B . F 5 HOH 1 201 1 HOH HOH A . F 5 HOH 2 202 2 HOH HOH A . F 5 HOH 3 203 3 HOH HOH A . F 5 HOH 4 204 6 HOH HOH A . F 5 HOH 5 205 7 HOH HOH A . F 5 HOH 6 206 9 HOH HOH A . F 5 HOH 7 207 11 HOH HOH A . F 5 HOH 8 208 208 HOH HOH A . F 5 HOH 9 209 13 HOH HOH A . F 5 HOH 10 210 15 HOH HOH A . F 5 HOH 11 211 21 HOH HOH A . F 5 HOH 12 212 23 HOH HOH A . F 5 HOH 13 213 24 HOH HOH A . F 5 HOH 14 214 25 HOH HOH A . F 5 HOH 15 215 29 HOH HOH A . F 5 HOH 16 216 30 HOH HOH A . F 5 HOH 17 217 31 HOH HOH A . F 5 HOH 18 218 32 HOH HOH A . F 5 HOH 19 219 33 HOH HOH A . G 5 HOH 1 201 5 HOH HOH B . G 5 HOH 2 202 8 HOH HOH B . G 5 HOH 3 203 10 HOH HOH B . G 5 HOH 4 204 14 HOH HOH B . G 5 HOH 5 205 16 HOH HOH B . G 5 HOH 6 206 17 HOH HOH B . G 5 HOH 7 207 18 HOH HOH B . G 5 HOH 8 208 19 HOH HOH B . G 5 HOH 9 209 20 HOH HOH B . G 5 HOH 10 210 22 HOH HOH B . G 5 HOH 11 211 26 HOH HOH B . G 5 HOH 12 212 27 HOH HOH B . G 5 HOH 13 213 28 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 930 ? 1 MORE -5 ? 1 'SSA (A^2)' 2010 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A K 102 ? D K . 2 1 A HOH 208 ? F HOH . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O6 ? B DG 1 ? B DG 1 ? 1_555 K ? E K . ? B K 101 ? 1_555 O ? F HOH . ? A HOH 216 ? 1_555 69.6 ? 2 O ? F HOH . ? A HOH 205 ? 1_555 K ? D K . ? A K 102 ? 1_555 O ? F HOH . ? A HOH 209 ? 1_555 73.9 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-12-24 2 'Structure model' 1 1 2017-02-15 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description 1 1 'Structure model' repository 'Initial release' ? 2 2 'Structure model' repository Obsolete ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group Other # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal GDA 'data collection' . ? 1 ShelxC/D/E 'model building' . ? 2 REFMAC refinement 5.7.0029 ? 3 XDS 'data reduction' . ? 4 Aimless 'data scaling' . ? 5 ShelxC/D/E phasing . ? 6 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 "O3'" _pdbx_validate_rmsd_bond.auth_asym_id_1 B _pdbx_validate_rmsd_bond.auth_comp_id_1 DC _pdbx_validate_rmsd_bond.auth_seq_id_1 2 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 P _pdbx_validate_rmsd_bond.auth_asym_id_2 B _pdbx_validate_rmsd_bond.auth_comp_id_2 DC _pdbx_validate_rmsd_bond.auth_seq_id_2 3 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.530 _pdbx_validate_rmsd_bond.bond_target_value 1.607 _pdbx_validate_rmsd_bond.bond_deviation -0.077 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.012 _pdbx_validate_rmsd_bond.linker_flag Y # _ndb_struct_conf_na.entry_id 4IZR _ndb_struct_conf_na.feature 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 2 1_555 B DC 3 1_555 -0.380 -0.112 -0.011 -11.149 8.932 1.389 1 A_DG2:DC3_B A 2 ? B 3 ? 19 1 1 A DG 3 1_555 B DC 2 1_555 -0.130 -0.045 0.454 5.476 -4.313 -2.077 2 A_DG3:DC2_B A 3 ? B 2 ? 19 1 1 A DC 4 1_555 B DG 1 1_555 0.253 -0.176 0.287 -3.236 -5.211 0.120 3 A_DC4:DG1_B A 4 ? B 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 2 1_555 B DC 3 1_555 A DG 3 1_555 B DC 2 1_555 -1.549 1.361 3.114 -4.908 1.275 30.703 2.295 1.952 3.367 2.388 9.191 31.109 1 AA_DG2DG3:DC2DC3_BB A 2 ? B 3 ? A 3 ? B 2 ? 1 A DG 3 1_555 B DC 2 1_555 A DC 4 1_555 B DG 1 1_555 0.645 -0.411 3.525 1.388 -0.079 36.830 -0.638 -0.817 3.547 -0.126 -2.196 36.856 2 AA_DG3DC4:DG1DC2_BB A 3 ? B 2 ? A 4 ? B 1 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'Lambda-[Ru(bpy)2dppz]2+' RLB 4 'POTASSIUM ION' K 5 water HOH #