0.011036
0.006372
0.000000
0.000000
0.012743
0.000000
0.000000
0.000000
0.006733
0.00000
0.00000
0.00000
Tamjar, J.
Popov, A.N.
Malinina, L.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
18
90.00
90.00
120.00
90.611
90.611
148.521
C10 H14 N5 O7 P
347.221
y
ADENOSINE-5'-MONOPHOSPHATE
RNA linking
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C9 H14 N3 O8 P
323.197
y
CYTIDINE-5'-MONOPHOSPHATE
RNA linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C10 H14 N5 O8 P
363.221
y
GUANOSINE-5'-MONOPHOSPHATE
RNA linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
O4 S -2
96.063
SULFATE ION
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C9 H13 N2 O9 P
324.181
y
URIDINE-5'-MONOPHOSPHATE
RNA linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
O
N
2
N
P
N
3
N
O
N
4
N
O
N
5
N
O
N
6
N
C
N
7
R
C
N
8
N
O
N
9
S
C
N
10
N
O
N
11
R
C
N
12
N
O
N
13
R
C
Y
14
N
N
Y
15
N
C
Y
16
N
N
Y
17
N
C
Y
18
N
C
N
19
N
N
Y
20
N
N
Y
21
N
C
Y
22
N
N
Y
23
N
C
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
N
N
39
S
C
N
40
N
C
N
41
N
O
N
42
N
C
N
43
N
O
N
44
N
H
N
45
N
H
N
46
N
H
N
47
N
H
N
48
N
H
N
49
N
H
N
50
N
H
N
51
N
N
N
52
S
C
N
53
N
C
N
54
N
O
N
55
N
C
N
56
N
C
N
57
N
C
N
58
N
N
N
59
N
C
N
60
N
N
N
61
N
N
N
62
N
O
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
N
N
79
S
C
N
80
N
C
N
81
N
O
N
82
N
C
N
83
N
C
N
84
N
O
N
85
N
N
N
86
N
O
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
N
N
96
S
C
N
97
N
C
N
98
N
O
N
99
N
C
N
100
N
C
N
101
N
O
N
102
N
O
N
103
N
O
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
O
N
112
N
P
N
113
N
O
N
114
N
O
N
115
N
O
N
116
N
C
N
117
R
C
N
118
N
O
N
119
S
C
N
120
N
O
N
121
R
C
N
122
N
O
N
123
R
C
N
124
N
N
N
125
N
C
N
126
N
O
N
127
N
N
N
128
N
C
N
129
N
N
N
130
N
C
N
131
N
C
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
N
N
147
R
C
N
148
N
C
N
149
N
O
N
150
N
C
N
151
N
S
N
152
N
O
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
O
N
161
N
P
N
162
N
O
N
163
N
O
N
164
N
O
N
165
N
C
N
166
R
C
N
167
N
O
N
168
S
C
N
169
N
O
N
170
R
C
N
171
N
O
N
172
R
C
Y
173
N
N
Y
174
N
C
Y
175
N
N
Y
176
N
C
N
177
N
C
N
178
N
O
N
179
N
N
N
180
N
C
N
181
N
N
N
182
N
N
Y
183
N
C
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
N
N
199
S
C
N
200
N
C
N
201
N
O
N
202
N
C
N
203
N
C
N
204
N
C
N
205
N
O
N
206
N
N
N
207
N
O
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
N
N
219
S
C
N
220
N
C
N
221
N
O
N
222
N
C
N
223
N
C
N
224
N
C
N
225
N
O
N
226
N
O
N
227
N
O
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
N
N
238
N
C
N
239
N
C
N
240
N
O
N
241
N
O
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
N
N
248
S
C
N
249
N
C
N
250
N
O
N
251
N
C
Y
252
N
C
Y
253
N
N
Y
254
N
C
Y
255
N
C
Y
256
N
N
N
257
N
O
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
O
N
269
N
H
N
270
N
H
N
271
N
N
N
272
S
C
N
273
N
C
N
274
N
O
N
275
S
C
N
276
N
C
N
277
N
C
N
278
N
C
N
279
N
O
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
N
N
294
S
C
N
295
N
C
N
296
N
O
N
297
N
C
N
298
N
C
N
299
N
C
N
300
N
C
N
301
N
O
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
N
N
316
S
C
N
317
N
C
N
318
N
O
N
319
N
C
N
320
N
C
N
321
N
C
N
322
N
C
N
323
N
N
N
324
N
O
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
N
N
341
S
C
N
342
N
C
N
343
N
O
N
344
N
C
N
345
N
C
N
346
N
S
N
347
N
C
N
348
N
O
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
N
N
361
S
C
N
362
N
C
N
363
N
O
N
364
N
C
Y
365
N
C
Y
366
N
C
Y
367
N
C
Y
368
N
C
Y
369
N
C
Y
370
N
C
N
371
N
O
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
N
N
384
S
C
N
385
N
C
N
386
N
O
N
387
N
C
N
388
N
C
N
389
N
C
N
390
N
O
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
N
N
401
S
C
N
402
N
C
N
403
N
O
N
404
N
C
N
405
N
O
N
406
N
O
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
S
N
415
N
O
N
416
N
O
N
417
N
O
N
418
N
O
N
419
N
N
N
420
S
C
N
421
N
C
N
422
N
O
N
423
R
C
N
424
N
O
N
425
N
C
N
426
N
O
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
N
N
437
S
C
N
438
N
C
N
439
N
O
N
440
N
C
Y
441
N
C
Y
442
N
C
Y
443
N
C
Y
444
N
N
Y
445
N
C
Y
446
N
C
Y
447
N
C
Y
448
N
C
Y
449
N
C
N
450
N
O
N
451
N
H
N
452
N
H
N
453
N
H
N
454
N
H
N
455
N
H
N
456
N
H
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
H
N
462
N
H
N
463
N
N
N
464
S
C
N
465
N
C
N
466
N
O
N
467
N
C
Y
468
N
C
Y
469
N
C
Y
470
N
C
Y
471
N
C
Y
472
N
C
Y
473
N
C
N
474
N
O
N
475
N
O
N
476
N
H
N
477
N
H
N
478
N
H
N
479
N
H
N
480
N
H
N
481
N
H
N
482
N
H
N
483
N
H
N
484
N
H
N
485
N
H
N
486
N
H
N
487
N
O
N
488
N
P
N
489
N
O
N
490
N
O
N
491
N
O
N
492
N
C
N
493
R
C
N
494
N
O
N
495
S
C
N
496
N
O
N
497
R
C
N
498
N
O
N
499
R
C
N
500
N
N
N
501
N
C
N
502
N
O
N
503
N
N
N
504
N
C
N
505
N
O
N
506
N
C
N
507
N
C
N
508
N
H
N
509
N
H
N
510
N
H
N
511
N
H
N
512
N
H
N
513
N
H
N
514
N
H
N
515
N
H
N
516
N
H
N
517
N
H
N
518
N
H
N
519
N
H
N
520
N
H
N
521
N
N
N
522
S
C
N
523
N
C
N
524
N
O
N
525
N
C
N
526
N
C
N
527
N
C
N
528
N
O
N
529
N
H
N
530
N
H
N
531
N
H
N
532
N
H
N
533
N
H
N
534
N
H
N
535
N
H
N
536
N
H
N
537
N
H
N
538
N
H
N
539
N
H
N
1
N
sing
N
2
N
sing
N
3
N
doub
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
Y
25
N
sing
Y
26
N
sing
Y
27
N
doub
N
28
N
sing
Y
29
N
sing
Y
30
N
sing
Y
31
N
doub
N
32
N
sing
Y
33
N
doub
N
34
N
sing
N
35
N
sing
Y
36
N
sing
Y
37
N
doub
N
38
N
sing
Y
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
doub
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
doub
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
doub
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
doub
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
doub
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
doub
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
doub
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
doub
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
doub
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
doub
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
doub
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
Y
182
N
sing
Y
183
N
sing
Y
184
N
doub
N
185
N
sing
Y
186
N
sing
N
187
N
sing
Y
188
N
doub
N
189
N
doub
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
doub
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
doub
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
doub
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
doub
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
doub
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
doub
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
doub
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
Y
255
N
sing
Y
256
N
doub
Y
257
N
doub
N
258
N
sing
Y
259
N
sing
N
260
N
sing
Y
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
doub
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
doub
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
doub
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
doub
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
doub
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
Y
363
N
doub
Y
364
N
sing
Y
365
N
sing
N
366
N
sing
Y
367
N
doub
N
368
N
sing
Y
369
N
doub
N
370
N
sing
Y
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
doub
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
doub
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
doub
N
406
N
doub
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
doub
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
doub
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
Y
436
N
doub
Y
437
N
sing
Y
438
N
sing
N
439
N
sing
Y
440
N
doub
Y
441
N
sing
Y
442
N
sing
N
443
N
sing
Y
444
N
sing
Y
445
N
doub
N
446
N
sing
Y
447
N
doub
N
448
N
sing
Y
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
doub
N
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
sing
Y
464
N
doub
Y
465
N
sing
Y
466
N
sing
N
467
N
sing
Y
468
N
doub
N
469
N
sing
Y
470
N
doub
N
471
N
sing
Y
472
N
sing
N
473
N
sing
N
474
N
sing
N
475
N
sing
N
476
N
sing
N
477
N
sing
N
478
N
sing
N
479
N
doub
N
480
N
sing
N
481
N
sing
N
482
N
sing
N
483
N
sing
N
484
N
sing
N
485
N
sing
N
486
N
sing
N
487
N
sing
N
488
N
sing
N
489
N
sing
N
490
N
sing
N
491
N
sing
N
492
N
sing
N
493
N
sing
N
494
N
sing
N
495
N
sing
N
496
N
sing
N
497
N
sing
N
498
N
sing
N
499
N
sing
N
500
N
sing
N
501
N
sing
N
502
N
sing
N
503
N
doub
N
504
N
sing
N
505
N
sing
N
506
N
sing
N
507
N
doub
N
508
N
sing
N
509
N
doub
N
510
N
sing
N
511
N
sing
N
512
N
sing
N
513
N
sing
N
514
N
sing
N
515
N
sing
N
516
N
sing
N
517
N
sing
N
518
N
doub
N
519
N
sing
N
520
N
sing
N
521
N
sing
N
522
N
sing
N
523
N
sing
N
524
N
sing
N
525
N
sing
N
526
N
sing
N
527
N
sing
N
528
N
sing
N
529
N
sing
To be Published
0353
Procrustean bed of RNA silencing suppression
10.2210/pdb4j39/pdb
pdb_00004j39
100
1
CCD
2011-11-22
ADSC QUANTUM 315r
Si(111)
SINGLE WAVELENGTH
M
x-ray
1
0.9724
1.0
ID23-1
ESRF
0.9724
SYNCHROTRON
ESRF BEAMLINE ID23-1
14513.208
RNA silencing suppressor p19
UNP residues 27-149
1
man
polymer
siRNA p(CAG)3C(CUG)3
6068.665
5'-R(P*CP*AP*GP*CP*AP*GP*CP*AP*GP*CP*CP*UP*GP*CP*UP*GP*CP*UP*G)-3'
1
syn
polymer
96.063
SULFATE ION
4
syn
non-polymer
18.015
water
151
nat
water
19 kDa symptom severity modulator
no
no
GSHMTSPFKLPDESPSWTEWRLHNDETNSNQDNPLGFKESWGFGKVVFKRYLRYDRTEASLHRVLGSWTGDSVNYAASRF
FGFDQIGCTYSIRFRGVSITVSGGSRTLQHLCEMAIRSKQELLQLAP
GSHMTSPFKLPDESPSWTEWRLHNDETNSNQDNPLGFKESWGFGKVVFKRYLRYDRTEASLHRVLGSWTGDSVNYAASRF
FGFDQIGCTYSIRFRGVSITVSGGSRTLQHLCEMAIRSKQELLQLAP
A
polypeptide(L)
no
no
CAGCAGCAGCCUGCUGCUG
CAGCAGCAGCCUGCUGCUG
B
polyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
TBSV
sample
ORF4
12145
Tomato bushy stunt virus
562
Escherichia coli
1
2.89
57.44
VAPOR DIFFUSION, HANGING DROP
6
1.3 mM ammonium sulfate, 0.1 M MES, pH 6, VAPOR DIFFUSION, HANGING DROP, temperature 291K
291
1.961
1
19
B
1
B
19
-3.726
B_C1:G19_B
1
-9.524
0.020
-0.238
-0.129
-1.304
1
20
B
2
B
18
3.200
B_A2:U18_B
2
-8.789
0.084
0.000
-0.129
-2.484
1
19
B
3
B
17
1.714
B_G3:C17_B
3
-9.341
-0.680
-0.018
-0.144
-2.711
1
19
B
4
B
16
0.860
B_C4:G16_B
4
-10.632
0.452
-0.032
-0.283
-1.445
1
20
B
5
B
15
8.186
B_A5:U15_B
5
-16.730
0.046
0.178
0.143
-4.618
1
19
B
6
B
14
3.080
B_G6:C14_B
6
-13.655
-0.375
-0.203
-0.152
-6.326
1
19
B
7
B
13
0.799
B_C7:G13_B
7
-11.030
0.271
0.114
-0.091
-4.639
1
20
B
8
B
12
1.724
B_A8:U12_B
8
-9.349
0.296
0.221
-0.105
-1.055
1
19
B
9
B
11
-0.210
B_G9:C11_B
9
-11.886
-0.135
0.116
-0.208
1.055
1
19
B
11
B
9
-0.210
B_C11:G9_B
10
-11.886
0.135
0.116
-0.208
4.639
1
20
B
12
B
8
1.724
B_U12:A8_B
11
-9.349
-0.296
0.221
-0.105
6.326
1
19
B
13
B
7
0.799
B_G13:C7_B
12
-11.030
-0.271
0.114
-0.091
4.618
1
19
B
14
B
6
3.080
B_C14:G6_B
13
-13.656
0.375
-0.203
-0.152
1.445
1
20
B
15
B
5
8.186
B_U15:A5_B
14
-16.730
-0.046
0.178
0.143
2.711
1
19
B
16
B
4
0.860
B_G16:C4_B
15
-10.632
-0.452
-0.032
-0.283
2.484
1
19
B
17
B
3
1.714
B_C17:G3_B
16
-9.341
0.680
-0.018
-0.144
1.304
1
20
B
18
B
2
3.200
B_U18:A2_B
17
-8.789
-0.084
0.000
-0.129
-1.961
1
19
B
19
B
1
-3.726
B_G19:C1_B
18
-9.524
-0.020
-0.238
-0.129
2.624
32.964
B
B
1
2
18.127
B
B
19
18
3.325
10.116
0.427
-1.678
BB_C1A2:U18G19_BB
1
-2.770
4.964
31.295
-4.566
-1.193
2.784
26.890
B
B
2
3
13.500
B
B
18
17
3.288
6.223
-0.121
-1.842
BB_A2G3:C17U18_BB
2
-0.334
0.724
26.170
-5.466
0.180
3.133
35.314
B
B
3
4
4.762
B
B
17
16
3.307
2.886
-0.079
-2.042
BB_G3C4:G16C17_BB
3
0.693
-1.143
35.193
-3.787
0.230
2.118
26.312
B
B
4
5
23.807
B
B
16
15
3.104
10.540
0.333
-1.887
BB_C4A5:U15G16_BB
4
1.088
-2.458
24.119
-6.505
-0.488
2.729
32.073
B
B
5
6
18.411
B
B
15
14
3.354
10.010
-0.353
-1.495
BB_A5G6:C14U15_BB
5
0.818
-1.505
30.499
-4.425
0.779
3.001
32.859
B
B
6
7
10.571
B
B
14
13
3.341
5.949
0.426
-1.640
BB_G6C7:G13C14_BB
6
0.089
-0.158
32.331
-3.895
-0.738
2.543
31.619
B
B
7
8
16.312
B
B
13
12
3.077
8.758
0.547
-1.700
BB_C7A8:U12G13_BB
7
3.620
-6.741
30.200
-4.546
-0.414
2.580
26.836
B
B
8
9
16.168
B
B
12
11
3.142
7.377
0.695
-1.902
BB_A8G9:C11U12_BB
8
4.362
-9.561
25.454
-5.807
-0.486
5.971
70.531
B
B
9
11
7.060
B
B
11
9
6.322
8.138
0.000
-3.170
BB_G9C11:G9C11_BB
9
0.000
0.000
70.120
-3.282
0.000
2.580
26.836
B
B
11
12
16.168
B
B
9
8
3.142
7.377
-0.695
-1.902
BB_C11U12:A8G9_BB
10
-4.362
9.561
25.454
-5.807
0.486
2.543
31.619
B
B
12
13
16.312
B
B
8
7
3.077
8.758
-0.547
-1.700
BB_U12G13:C7A8_BB
11
-3.620
6.741
30.200
-4.546
0.414
3.001
32.859
B
B
13
14
10.571
B
B
7
6
3.341
5.949
-0.426
-1.640
BB_G13C14:G6C7_BB
12
-0.089
0.158
32.331
-3.895
0.738
2.729
32.073
B
B
14
15
18.411
B
B
6
5
3.354
10.010
0.353
-1.495
BB_C14U15:A5G6_BB
13
-0.818
1.505
30.499
-4.425
-0.779
2.118
26.312
B
B
15
16
23.807
B
B
5
4
3.104
10.540
-0.333
-1.887
BB_U15G16:C4A5_BB
14
-1.088
2.458
24.119
-6.505
0.488
3.133
35.314
B
B
16
17
4.762
B
B
4
3
3.307
2.886
0.079
-2.042
BB_G16C17:G3C4_BB
15
-0.693
1.143
35.193
-3.787
-0.230
2.784
26.890
B
B
17
18
13.500
B
B
3
2
3.288
6.223
0.121
-1.842
BB_C17U18:A2G3_BB
16
0.334
-0.724
26.170
-5.466
-0.180
2.624
32.964
B
B
18
19
18.127
B
B
2
1
3.325
10.116
-0.427
-1.678
BB_U18G19:C1A2_BB
17
2.770
-4.964
31.295
-4.566
1.193
citation_author
chem_comp_atom
chem_comp_bond
database_2
struct_ref_seq_dif
struct_site
repository
Initial release
Database references
Data collection
Database references
Derived calculations
1
0
2014-02-05
1
1
2018-01-24
1
2
2024-02-28
_citation_author.name
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
siRNA comprising CUG/CGG repeats
siRNA comprising CUG/CUG repeats
Complex of p19 with 19mer RNA
RCSB
Y
RCSB
2013-02-05
REL
REL
SO4
SULFATE ION
HOH
water
SO4
1
3
SO4
SO4
201
A
SO4
2
3
SO4
SO4
202
A
SO4
3
3
SO4
SO4
203
A
SO4
4
3
SO4
SO4
204
A
HOH
1
4
HOH
HOH
301
A
HOH
2
4
HOH
HOH
302
A
HOH
3
4
HOH
HOH
303
A
HOH
4
4
HOH
HOH
304
A
HOH
5
4
HOH
HOH
305
A
HOH
6
4
HOH
HOH
306
A
HOH
7
4
HOH
HOH
307
A
HOH
8
4
HOH
HOH
308
A
HOH
9
4
HOH
HOH
309
A
HOH
10
4
HOH
HOH
310
A
HOH
11
4
HOH
HOH
311
A
HOH
12
4
HOH
HOH
312
A
HOH
13
4
HOH
HOH
313
A
HOH
14
4
HOH
HOH
314
A
HOH
15
4
HOH
HOH
315
A
HOH
16
4
HOH
HOH
316
A
HOH
17
4
HOH
HOH
317
A
HOH
18
4
HOH
HOH
318
A
HOH
19
4
HOH
HOH
319
A
HOH
20
4
HOH
HOH
320
A
HOH
21
4
HOH
HOH
321
A
HOH
22
4
HOH
HOH
322
A
HOH
23
4
HOH
HOH
323
A
HOH
24
4
HOH
HOH
324
A
HOH
25
4
HOH
HOH
325
A
HOH
26
4
HOH
HOH
326
A
HOH
27
4
HOH
HOH
327
A
HOH
28
4
HOH
HOH
328
A
HOH
29
4
HOH
HOH
329
A
HOH
30
4
HOH
HOH
330
A
HOH
31
4
HOH
HOH
331
A
HOH
32
4
HOH
HOH
332
A
HOH
33
4
HOH
HOH
333
A
HOH
34
4
HOH
HOH
334
A
HOH
35
4
HOH
HOH
335
A
HOH
36
4
HOH
HOH
336
A
HOH
37
4
HOH
HOH
337
A
HOH
38
4
HOH
HOH
338
A
HOH
39
4
HOH
HOH
339
A
HOH
40
4
HOH
HOH
340
A
HOH
41
4
HOH
HOH
341
A
HOH
42
4
HOH
HOH
342
A
HOH
43
4
HOH
HOH
343
A
HOH
44
4
HOH
HOH
344
A
HOH
45
4
HOH
HOH
345
A
HOH
46
4
HOH
HOH
346
A
HOH
47
4
HOH
HOH
347
A
HOH
48
4
HOH
HOH
348
A
HOH
49
4
HOH
HOH
349
A
HOH
50
4
HOH
HOH
350
A
HOH
51
4
HOH
HOH
351
A
HOH
52
4
HOH
HOH
352
A
HOH
53
4
HOH
HOH
353
A
HOH
54
4
HOH
HOH
354
A
HOH
55
4
HOH
HOH
355
A
HOH
56
4
HOH
HOH
356
A
HOH
57
4
HOH
HOH
357
A
HOH
58
4
HOH
HOH
358
A
HOH
59
4
HOH
HOH
359
A
HOH
60
4
HOH
HOH
360
A
HOH
61
4
HOH
HOH
361
A
HOH
62
4
HOH
HOH
362
A
HOH
63
4
HOH
HOH
363
A
HOH
64
4
HOH
HOH
364
A
HOH
65
4
HOH
HOH
365
A
HOH
66
4
HOH
HOH
366
A
HOH
67
4
HOH
HOH
367
A
HOH
68
4
HOH
HOH
368
A
HOH
69
4
HOH
HOH
369
A
HOH
70
4
HOH
HOH
370
A
HOH
71
4
HOH
HOH
371
A
HOH
72
4
HOH
HOH
372
A
HOH
73
4
HOH
HOH
373
A
HOH
74
4
HOH
HOH
374
A
HOH
75
4
HOH
HOH
375
A
HOH
76
4
HOH
HOH
376
A
HOH
77
4
HOH
HOH
377
A
HOH
78
4
HOH
HOH
378
A
HOH
79
4
HOH
HOH
379
A
HOH
80
4
HOH
HOH
380
A
HOH
81
4
HOH
HOH
381
A
HOH
82
4
HOH
HOH
382
A
HOH
83
4
HOH
HOH
383
A
HOH
84
4
HOH
HOH
384
A
HOH
85
4
HOH
HOH
385
A
HOH
86
4
HOH
HOH
386
A
HOH
87
4
HOH
HOH
387
A
HOH
88
4
HOH
HOH
388
A
HOH
89
4
HOH
HOH
389
A
HOH
90
4
HOH
HOH
390
A
HOH
91
4
HOH
HOH
391
A
HOH
92
4
HOH
HOH
392
A
HOH
93
4
HOH
HOH
393
A
HOH
94
4
HOH
HOH
394
A
HOH
95
4
HOH
HOH
395
A
HOH
96
4
HOH
HOH
396
A
HOH
97
4
HOH
HOH
397
A
HOH
98
4
HOH
HOH
398
A
HOH
99
4
HOH
HOH
399
A
HOH
100
4
HOH
HOH
400
A
HOH
101
4
HOH
HOH
401
A
HOH
102
4
HOH
HOH
402
A
HOH
103
4
HOH
HOH
403
A
HOH
104
4
HOH
HOH
404
A
HOH
105
4
HOH
HOH
405
A
HOH
106
4
HOH
HOH
406
A
HOH
107
4
HOH
HOH
407
A
HOH
111
4
HOH
HOH
408
A
HOH
112
4
HOH
HOH
409
A
HOH
113
4
HOH
HOH
410
A
HOH
114
4
HOH
HOH
411
A
HOH
115
4
HOH
HOH
412
A
HOH
116
4
HOH
HOH
413
A
HOH
122
4
HOH
HOH
414
A
HOH
132
4
HOH
HOH
415
A
HOH
147
4
HOH
HOH
416
A
HOH
152
4
HOH
HOH
417
A
HOH
108
4
HOH
HOH
101
B
HOH
109
4
HOH
HOH
102
B
HOH
110
4
HOH
HOH
103
B
HOH
117
4
HOH
HOH
104
B
HOH
118
4
HOH
HOH
105
B
HOH
119
4
HOH
HOH
106
B
HOH
120
4
HOH
HOH
107
B
HOH
121
4
HOH
HOH
108
B
HOH
123
4
HOH
HOH
109
B
HOH
124
4
HOH
HOH
110
B
HOH
125
4
HOH
HOH
111
B
HOH
126
4
HOH
HOH
112
B
HOH
127
4
HOH
HOH
113
B
HOH
128
4
HOH
HOH
114
B
HOH
129
4
HOH
HOH
115
B
HOH
130
4
HOH
HOH
116
B
HOH
131
4
HOH
HOH
117
B
HOH
133
4
HOH
HOH
118
B
HOH
134
4
HOH
HOH
119
B
HOH
136
4
HOH
HOH
120
B
HOH
137
4
HOH
HOH
121
B
HOH
138
4
HOH
HOH
122
B
HOH
139
4
HOH
HOH
123
B
HOH
140
4
HOH
HOH
124
B
HOH
141
4
HOH
HOH
125
B
HOH
142
4
HOH
HOH
126
B
HOH
143
4
HOH
HOH
127
B
HOH
144
4
HOH
HOH
128
B
HOH
145
4
HOH
HOH
129
B
HOH
146
4
HOH
HOH
130
B
HOH
148
4
HOH
HOH
131
B
HOH
149
4
HOH
HOH
132
B
HOH
150
4
HOH
HOH
133
B
HOH
151
4
HOH
HOH
134
B
n
1
1
A
n
2
2
A
n
3
3
A
MET
4
n
4
MET
4
A
THR
5
n
5
THR
5
A
SER
6
n
6
SER
6
A
PRO
7
n
7
PRO
7
A
PHE
8
n
8
PHE
8
A
LYS
9
n
9
LYS
9
A
LEU
10
n
10
LEU
10
A
PRO
11
n
11
PRO
11
A
ASP
12
n
12
ASP
12
A
GLU
13
n
13
GLU
13
A
SER
14
n
14
SER
14
A
PRO
15
n
15
PRO
15
A
SER
16
n
16
SER
16
A
TRP
17
n
17
TRP
17
A
THR
18
n
18
THR
18
A
GLU
19
n
19
GLU
19
A
TRP
20
n
20
TRP
20
A
ARG
21
n
21
ARG
21
A
LEU
22
n
22
LEU
22
A
HIS
23
n
23
HIS
23
A
ASN
24
n
24
ASN
24
A
ASP
25
n
25
ASP
25
A
GLU
26
n
26
GLU
26
A
THR
27
n
27
THR
27
A
n
28
28
A
n
29
29
A
ASN
30
n
30
ASN
30
A
GLN
31
n
31
GLN
31
A
ASP
32
n
32
ASP
32
A
ASN
33
n
33
ASN
33
A
PRO
34
n
34
PRO
34
A
LEU
35
n
35
LEU
35
A
GLY
36
n
36
GLY
36
A
PHE
37
n
37
PHE
37
A
LYS
38
n
38
LYS
38
A
GLU
39
n
39
GLU
39
A
SER
40
n
40
SER
40
A
TRP
41
n
41
TRP
41
A
GLY
42
n
42
GLY
42
A
PHE
43
n
43
PHE
43
A
GLY
44
n
44
GLY
44
A
LYS
45
n
45
LYS
45
A
VAL
46
n
46
VAL
46
A
VAL
47
n
47
VAL
47
A
PHE
48
n
48
PHE
48
A
LYS
49
n
49
LYS
49
A
ARG
50
n
50
ARG
50
A
TYR
51
n
51
TYR
51
A
LEU
52
n
52
LEU
52
A
ARG
53
n
53
ARG
53
A
TYR
54
n
54
TYR
54
A
ASP
55
n
55
ASP
55
A
ARG
56
n
56
ARG
56
A
THR
57
n
57
THR
57
A
GLU
58
n
58
GLU
58
A
ALA
59
n
59
ALA
59
A
SER
60
n
60
SER
60
A
LEU
61
n
61
LEU
61
A
HIS
62
n
62
HIS
62
A
ARG
63
n
63
ARG
63
A
VAL
64
n
64
VAL
64
A
LEU
65
n
65
LEU
65
A
GLY
66
n
66
GLY
66
A
SER
67
n
67
SER
67
A
TRP
68
n
68
TRP
68
A
THR
69
n
69
THR
69
A
GLY
70
n
70
GLY
70
A
ASP
71
n
71
ASP
71
A
SER
72
n
72
SER
72
A
VAL
73
n
73
VAL
73
A
ASN
74
n
74
ASN
74
A
TYR
75
n
75
TYR
75
A
ALA
76
n
76
ALA
76
A
ALA
77
n
77
ALA
77
A
SER
78
n
78
SER
78
A
ARG
79
n
79
ARG
79
A
PHE
80
n
80
PHE
80
A
PHE
81
n
81
PHE
81
A
GLY
82
n
82
GLY
82
A
PHE
83
n
83
PHE
83
A
ASP
84
n
84
ASP
84
A
GLN
85
n
85
GLN
85
A
ILE
86
n
86
ILE
86
A
GLY
87
n
87
GLY
87
A
CYS
88
n
88
CYS
88
A
THR
89
n
89
THR
89
A
TYR
90
n
90
TYR
90
A
SER
91
n
91
SER
91
A
ILE
92
n
92
ILE
92
A
ARG
93
n
93
ARG
93
A
PHE
94
n
94
PHE
94
A
ARG
95
n
95
ARG
95
A
GLY
96
n
96
GLY
96
A
VAL
97
n
97
VAL
97
A
SER
98
n
98
SER
98
A
ILE
99
n
99
ILE
99
A
THR
100
n
100
THR
100
A
VAL
101
n
101
VAL
101
A
SER
102
n
102
SER
102
A
GLY
103
n
103
GLY
103
A
GLY
104
n
104
GLY
104
A
SER
105
n
105
SER
105
A
ARG
106
n
106
ARG
106
A
THR
107
n
107
THR
107
A
LEU
108
n
108
LEU
108
A
GLN
109
n
109
GLN
109
A
HIS
110
n
110
HIS
110
A
LEU
111
n
111
LEU
111
A
CYS
112
n
112
CYS
112
A
GLU
113
n
113
GLU
113
A
MET
114
n
114
MET
114
A
ALA
115
n
115
ALA
115
A
ILE
116
n
116
ILE
116
A
ARG
117
n
117
ARG
117
A
SER
118
n
118
SER
118
A
LYS
119
n
119
LYS
119
A
GLN
120
n
120
GLN
120
A
GLU
121
n
121
GLU
121
A
LEU
122
n
122
LEU
122
A
LEU
123
n
123
LEU
123
A
GLN
124
n
124
GLN
124
A
LEU
125
n
125
LEU
125
A
ALA
126
n
126
ALA
126
A
PRO
127
n
127
PRO
127
A
C
1
n
1
C
1
B
A
2
n
2
A
2
B
G
3
n
3
G
3
B
C
4
n
4
C
4
B
A
5
n
5
A
5
B
G
6
n
6
G
6
B
C
7
n
7
C
7
B
A
8
n
8
A
8
B
G
9
n
9
G
9
B
C
10
n
10
C
10
B
C
11
n
11
C
11
B
U
12
n
12
U
12
B
G
13
n
13
G
13
B
C
14
n
14
C
14
B
U
15
n
15
U
15
B
G
16
n
16
G
16
B
C
17
n
17
C
17
B
U
18
n
18
U
18
B
G
19
n
19
G
19
B
author_and_software_defined_assembly
PISA
4
tetrameric
8510
-153
17040
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-0.5000000000
0.8660254038
0.0000000000
0.8660254038
0.5000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
4_555
y,x,-z
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
A
O
ARG
50
A
O
ARG
50
A
N
GLU
39
A
N
GLU
39
A
N
GLY
42
A
N
GLY
42
A
O
THR
89
A
O
THR
89
A
N
TYR
90
A
N
TYR
90
A
O
VAL
101
A
O
VAL
101
1
A
HOH
322
G
HOH
1
A
HOH
365
G
HOH
1
A
GLY
1
A
GLY
1
1
Y
1
A
SER
2
A
SER
2
1
Y
1
A
HIS
3
A
HIS
3
1
Y
1
A
ASN
28
A
ASN
28
1
Y
1
A
SER
29
A
SER
29
1
Y
1
A
A
NE2
O
GLN
HOH
120
402
2.10
A
1
7.39
1.20
123.30
130.69
A
A
A
OE1
CD
OE2
GLU
GLU
GLU
39
39
39
N
1
11.92
1.70
111.00
122.92
A
A
A
CB
CG
CD1
LEU
LEU
LEU
65
65
65
N
1
12.32
1.60
110.90
123.22
A
A
A
CG1
CB
CG2
VAL
VAL
VAL
97
97
97
N
1
4.50
0.50
120.30
124.80
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
117
117
117
N
1
-8.68
0.90
105.70
97.02
B
B
B
O5'
P
OP2
C
C
C
1
1
1
B
B
B
N
1
-3.66
0.50
110.60
106.94
B
B
B
C2
N3
C4
A
A
A
2
2
2
N
1
-3.11
0.50
103.90
100.79
B
B
B
C5
N7
C8
A
A
A
2
2
2
N
1
3.14
0.50
128.60
131.74
B
B
B
N3
C4
C5
G
G
G
3
3
3
N
1
3.63
0.60
118.90
122.53
B
B
B
N1
C2
O2
C
C
C
4
4
4
N
1
5.45
0.70
108.50
113.95
B
B
B
O4'
C1'
N9
A
A
A
8
8
8
N
1
4.52
0.70
108.50
113.02
B
B
B
O4'
C1'
N1
C
C
C
10
10
10
N
1
10.08
1.50
119.60
129.68
B
B
B
OP1
P
OP2
C
C
C
11
11
11
N
1
-6.08
0.90
105.70
99.62
B
B
B
O5'
P
OP2
C
C
C
11
11
11
N
1
3.85
0.60
127.00
130.85
B
B
B
C2
N3
C4
U
U
U
12
12
12
N
1
4.86
0.70
108.50
113.36
B
B
B
O4'
C1'
N1
U
U
U
18
18
18
N
1
A
A
CE1
CZ
TYR
TYR
90
90
0.091
0.013
1.381
1.472
N
1
A
A
CB
SG
CYS
CYS
112
112
0.102
0.017
1.818
1.920
N
1
B
B
P
OP3
C
C
1
1
-0.121
0.012
1.607
1.486
A
A
N
1
B
B
P
OP3
C
C
1
1
-0.131
0.012
1.607
1.476
B
B
N
1
B
B
O5'
C5'
G
G
9
9
-0.054
0.009
1.420
1.366
N
1
B
B
N3
C4
G
G
13
13
0.072
0.007
1.350
1.422
N
1
B
B
C2
N3
U
U
18
18
0.043
0.007
1.373
1.416
N
36.088
2.77
1.39
0.00
2.77
0.00
-4.16
0.972
0.959
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.20695
0.18048
0.18175
1.70
15.00
1255
24226
4.9
98.59
1.000
0.330
2.286
0.074
RANDOM
1
THROUGHOUT
MOLECULAR REPLACEMENT
0.094
0.093
0.80
0.80
1.40
MAXIMUM LIKELIHOOD
BABINET MODEL WITH MASK
1.70
15.00
151
1566
20
405
990
0.028
0.021
1521
0.001
0.020
903
2.479
2.306
2154
2.595
3.000
2205
5.963
5.000
120
33.427
22.407
54
14.347
15.000
181
13.373
15.000
11
0.218
0.200
244
0.012
0.020
1350
0.001
0.020
284
0.188
0.200
79
0.149
0.200
29
0.389
0.200
73
0.189
0.200
31
1.810
1.500
607
0.535
1.500
248
3.003
2.000
982
3.261
3.000
914
4.543
4.500
1172
0.270
0.295
1.748
101
1604
20
90.98
1.7
20.0
4J39
25529
0.075
1
13.3
4.8
99.1
refinement
Garib N. Murshudov
garib@ysbl.york.ac.uk
Fortran_77
http://www.ccp4.ac.uk/dist/html/refmac5.html
REFMAC
program
5.2.0019
data extraction
PDB
deposit@deposit.rcsb.org
April 22, 2011
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.11
data collection
ADSC
Quantum
data reduction
HKL-2000
data scaling
HKL-2000
phasing
CNS
Crystal structure of p19 in complex with double-helical 19mer RNA p(CAG)3C(CUG)3
1
N
N
2
N
N
3
N
N
3
N
N
3
N
N
3
N
N
4
N
N
4
N
N
THE BIOLOGICAL UNIT IS A P19 HOMODIMER BOUND TO DOUBLE-STRANDED RNA.
A
SER
16
A
SER
16
HELX_P
A
THR
27
A
THR
27
1
1
12
A
THR
57
A
THR
57
HELX_P
A
GLY
66
A
GLY
66
1
2
10
A
THR
69
A
THR
69
HELX_P
A
ARG
79
A
ARG
79
1
3
11
A
THR
107
A
THR
107
HELX_P
A
LEU
125
A
LEU
125
1
4
19
hydrog
WATSON-CRICK
B
C
1
B
N3
C
1
1_555
B
G
19
B
N1
G
19
4_555
hydrog
WATSON-CRICK
B
C
1
B
N4
C
1
1_555
B
G
19
B
O6
G
19
4_555
hydrog
WATSON-CRICK
B
C
1
B
O2
C
1
1_555
B
G
19
B
N2
G
19
4_555
hydrog
WATSON-CRICK
B
A
2
B
N1
A
2
1_555
B
U
18
B
N3
U
18
4_555
hydrog
WATSON-CRICK
B
A
2
B
N6
A
2
1_555
B
U
18
B
O4
U
18
4_555
hydrog
WATSON-CRICK
B
G
3
B
N1
G
3
1_555
B
C
17
B
N3
C
17
4_555
hydrog
WATSON-CRICK
B
G
3
B
N2
G
3
1_555
B
C
17
B
O2
C
17
4_555
hydrog
WATSON-CRICK
B
G
3
B
O6
G
3
1_555
B
C
17
B
N4
C
17
4_555
hydrog
WATSON-CRICK
B
C
4
B
N3
C
4
1_555
B
G
16
B
N1
G
16
4_555
hydrog
WATSON-CRICK
B
C
4
B
N4
C
4
1_555
B
G
16
B
O6
G
16
4_555
hydrog
WATSON-CRICK
B
C
4
B
O2
C
4
1_555
B
G
16
B
N2
G
16
4_555
hydrog
WATSON-CRICK
B
A
5
B
N1
A
5
1_555
B
U
15
B
N3
U
15
4_555
hydrog
WATSON-CRICK
B
A
5
B
N6
A
5
1_555
B
U
15
B
O4
U
15
4_555
hydrog
WATSON-CRICK
B
G
6
B
N1
G
6
1_555
B
C
14
B
N3
C
14
4_555
hydrog
WATSON-CRICK
B
G
6
B
N2
G
6
1_555
B
C
14
B
O2
C
14
4_555
hydrog
WATSON-CRICK
B
G
6
B
O6
G
6
1_555
B
C
14
B
N4
C
14
4_555
hydrog
WATSON-CRICK
B
C
7
B
N3
C
7
1_555
B
G
13
B
N1
G
13
4_555
hydrog
WATSON-CRICK
B
C
7
B
N4
C
7
1_555
B
G
13
B
O6
G
13
4_555
hydrog
WATSON-CRICK
B
C
7
B
O2
C
7
1_555
B
G
13
B
N2
G
13
4_555
hydrog
WATSON-CRICK
B
A
8
B
N1
A
8
1_555
B
U
12
B
N3
U
12
4_555
hydrog
WATSON-CRICK
B
A
8
B
N6
A
8
1_555
B
U
12
B
O4
U
12
4_555
hydrog
WATSON-CRICK
B
G
9
B
N1
G
9
1_555
B
C
11
B
N3
C
11
4_555
hydrog
WATSON-CRICK
B
G
9
B
N2
G
9
1_555
B
C
11
B
O2
C
11
4_555
hydrog
WATSON-CRICK
B
G
9
B
O6
G
9
1_555
B
C
11
B
N4
C
11
4_555
hydrog
WATSON-CRICK
B
C
11
B
N3
C
11
1_555
B
G
9
B
N1
G
9
4_555
hydrog
WATSON-CRICK
B
C
11
B
N4
C
11
1_555
B
G
9
B
O6
G
9
4_555
hydrog
WATSON-CRICK
B
C
11
B
O2
C
11
1_555
B
G
9
B
N2
G
9
4_555
hydrog
WATSON-CRICK
B
U
12
B
N3
U
12
1_555
B
A
8
B
N1
A
8
4_555
hydrog
WATSON-CRICK
B
U
12
B
O4
U
12
1_555
B
A
8
B
N6
A
8
4_555
hydrog
WATSON-CRICK
B
G
13
B
N1
G
13
1_555
B
C
7
B
N3
C
7
4_555
hydrog
WATSON-CRICK
B
G
13
B
N2
G
13
1_555
B
C
7
B
O2
C
7
4_555
hydrog
WATSON-CRICK
B
G
13
B
O6
G
13
1_555
B
C
7
B
N4
C
7
4_555
hydrog
WATSON-CRICK
B
C
14
B
N3
C
14
1_555
B
G
6
B
N1
G
6
4_555
hydrog
WATSON-CRICK
B
C
14
B
N4
C
14
1_555
B
G
6
B
O6
G
6
4_555
hydrog
WATSON-CRICK
B
C
14
B
O2
C
14
1_555
B
G
6
B
N2
G
6
4_555
hydrog
WATSON-CRICK
B
U
15
B
N3
U
15
1_555
B
A
5
B
N1
A
5
4_555
hydrog
WATSON-CRICK
B
U
15
B
O4
U
15
1_555
B
A
5
B
N6
A
5
4_555
hydrog
WATSON-CRICK
B
G
16
B
N1
G
16
1_555
B
C
4
B
N3
C
4
4_555
hydrog
WATSON-CRICK
B
G
16
B
N2
G
16
1_555
B
C
4
B
O2
C
4
4_555
hydrog
WATSON-CRICK
B
G
16
B
O6
G
16
1_555
B
C
4
B
N4
C
4
4_555
hydrog
WATSON-CRICK
B
C
17
B
N3
C
17
1_555
B
G
3
B
N1
G
3
4_555
hydrog
WATSON-CRICK
B
C
17
B
N4
C
17
1_555
B
G
3
B
O6
G
3
4_555
hydrog
WATSON-CRICK
B
C
17
B
O2
C
17
1_555
B
G
3
B
N2
G
3
4_555
hydrog
WATSON-CRICK
B
U
18
B
N3
U
18
1_555
B
A
2
B
N1
A
2
4_555
hydrog
WATSON-CRICK
B
U
18
B
O4
U
18
1_555
B
A
2
B
N6
A
2
4_555
hydrog
WATSON-CRICK
B
G
19
B
N1
G
19
1_555
B
C
1
B
N3
C
1
4_555
hydrog
WATSON-CRICK
B
G
19
B
N2
G
19
1_555
B
C
1
B
O2
C
1
4_555
hydrog
WATSON-CRICK
B
G
19
B
O6
G
19
1_555
B
C
1
B
N4
C
1
4_555
RNA BINDING PROTEIN/RNA
RNA silencing suppression, trinucleotide repeats, dimer, RNA BINDING PROTEIN-RNA complex
P19_TBSVK
UNP
1
27
P69517
TSPFKLPDESPSWTEWRLHNDETNSNQDNPLGFKESWGFGKVVFKRYLRYDRTEASLHRVLGSWTGDSVNYAASRFFGFD
QIGCTYSIRFRGVSITVSGGSRTLQHLCEMAIRSKQELLQLAP
4J39
PDB
2
1
4J39
CAGCAGCAGCCUGCUGCUG
27
149
4J39
5
127
P69517
A
1
5
127
1
19
4J39
1
19
4J39
B
2
1
19
1
expression tag
GLY
1
4J39
A
P69517
UNP
1
1
expression tag
SER
2
4J39
A
P69517
UNP
2
1
expression tag
HIS
3
4J39
A
P69517
UNP
3
1
expression tag
MET
4
4J39
A
P69517
UNP
4
4
anti-parallel
anti-parallel
anti-parallel
A
VAL
46
A
VAL
46
A
ARG
53
A
ARG
53
A
GLY
36
A
GLY
36
A
PHE
43
A
PHE
43
A
GLY
87
A
GLY
87
A
PHE
94
A
PHE
94
A
VAL
97
A
VAL
97
A
GLY
104
A
GLY
104
BINDING SITE FOR RESIDUE SO4 A 201
A
SO4
201
Software
5
BINDING SITE FOR RESIDUE SO4 A 202
A
SO4
202
Software
5
BINDING SITE FOR RESIDUE SO4 A 203
A
SO4
203
Software
3
BINDING SITE FOR RESIDUE SO4 A 204
A
SO4
204
Software
5
A
SER
6
A
SER
6
5
1_555
A
PHE
48
A
PHE
48
5
1_555
A
ARG
50
A
ARG
50
5
1_555
A
HOH
315
G
HOH
5
1_555
A
HOH
341
G
HOH
5
1_555
A
SER
16
A
SER
16
5
1_555
A
THR
18
A
THR
18
5
1_555
A
HIS
62
A
HIS
62
5
12_555
A
HOH
303
G
HOH
5
1_555
A
HOH
316
G
HOH
5
1_555
A
THR
69
A
THR
69
3
1_555
A
GLY
70
A
GLY
70
3
1_555
A
ILE
116
A
ILE
116
3
1_555
A
GLN
31
A
GLN
31
5
1_555
A
ARG
93
A
ARG
93
5
1_555
A
ARG
95
A
ARG
95
5
1_555
A
GLY
96
A
GLY
96
5
1_555
A
HOH
357
G
HOH
5
1_555
155
H 3 2