0.023317 0.000000 0.000000 0.000000 0.014780 0.000000 0.000000 0.000000 0.014887 0.00000 0.00000 0.00000 Graves, B.J. Lukacs, C.M. Kammlott, R.U. Crowther, R. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 42.887 67.657 67.173 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C30 H30 Cl2 N4 O4 581.490 4-({(4S,5R)-4,5-bis(4-chlorophenyl)-2-[4-methoxy-2-(propan-2-yloxy)phenyl]-4,5-dihydro-1H-imidazol-1-yl}carbonyl)piperazin-2-one Nutlin 3a non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking O4 S -2 96.063 SULFATE ION non-polymer C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C Y 142 N C Y 143 N N Y 144 N C Y 145 N C Y 146 N N N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N O N 159 N H N 160 N H N 161 N N N 162 S C N 163 N C N 164 N O N 165 S C N 166 N C N 167 N C N 168 N C N 169 N O N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N N N 184 S C N 185 N C N 186 N O N 187 N C N 188 N C N 189 N C N 190 N C N 191 N O N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N N N 206 S C N 207 N C N 208 N O N 209 N C N 210 N C N 211 N C N 212 N C N 213 N N N 214 N O N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N N N 231 S C N 232 N C N 233 N O N 234 N C N 235 N C N 236 N S N 237 N C N 238 N O N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N O N 251 N C N 252 N N N 253 N C N 254 N C N 255 N O N 256 N N N 257 N C N 258 N C N 259 N N N 260 N C Y 261 N C Y 262 N C Y 263 N C Y 264 N C N 265 N O N 266 N C N 267 N C N 268 N C Y 269 N C Y 270 N C N 271 N O N 272 N C N 273 R C Y 274 N C Y 275 N C Y 276 N C Y 277 N C N 278 N CL Y 279 N C Y 280 N C N 281 S C N 282 N N Y 283 N C Y 284 N C Y 285 N C Y 286 N C N 287 N CL Y 288 N C Y 289 N C N 290 N H N 291 N H N 292 N H N 293 N H N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N H N 306 N H N 307 N H N 308 N H N 309 N H N 310 N H N 311 N H N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N N N 321 S C N 322 N C N 323 N O N 324 N C Y 325 N C Y 326 N C Y 327 N C Y 328 N C Y 329 N C Y 330 N C N 331 N O N 332 N H N 333 N H N 334 N H N 335 N H N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N N N 344 S C N 345 N C N 346 N O N 347 N C N 348 N C N 349 N C N 350 N O N 351 N H N 352 N H N 353 N H N 354 N H N 355 N H N 356 N H N 357 N H N 358 N H N 359 N H N 360 N N N 361 S C N 362 N C N 363 N O N 364 N C N 365 N O N 366 N O N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N H N 374 N S N 375 N O N 376 N O N 377 N O N 378 N O N 379 N N N 380 S C N 381 N C N 382 N O N 383 R C N 384 N O N 385 N C N 386 N O N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 392 N H N 393 N H N 394 N H N 395 N H N 396 N N N 397 S C N 398 N C N 399 N O N 400 N C Y 401 N C Y 402 N C Y 403 N C Y 404 N C Y 405 N C Y 406 N C N 407 N O N 408 N O N 409 N H N 410 N H N 411 N H N 412 N H N 413 N H N 414 N H N 415 N H N 416 N H N 417 N H N 418 N H N 419 N H N 420 N N N 421 S C N 422 N C N 423 N O N 424 N C N 425 N C N 426 N C N 427 N O N 428 N H N 429 N H N 430 N H N 431 N H N 432 N H N 433 N H N 434 N H N 435 N H N 436 N H N 437 N H N 438 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N doub N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N doub N 238 N sing N 239 N sing N 240 N sing N 241 N doub N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing Y 250 N doub Y 251 N sing N 252 N sing N 253 N sing Y 254 N sing Y 255 N doub Y 256 N sing N 257 N sing N 258 N doub N 259 N sing Y 260 N doub N 261 N sing Y 262 N sing N 263 N sing Y 264 N doub Y 265 N doub Y 266 N sing N 267 N sing N 268 N sing N 269 N sing Y 270 N doub Y 271 N sing Y 272 N sing Y 273 N doub Y 274 N sing N 275 N sing N 276 N sing Y 277 N doub Y 278 N doub Y 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N doub N 318 N sing N 319 N sing N 320 N sing N 321 N sing Y 322 N doub Y 323 N sing Y 324 N sing N 325 N sing Y 326 N doub N 327 N sing Y 328 N doub N 329 N sing Y 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N doub N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N doub N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N doub N 365 N doub N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N doub N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N doub N 391 N sing N 392 N sing N 393 N sing N 394 N sing Y 395 N doub Y 396 N sing Y 397 N sing N 398 N sing Y 399 N doub N 400 N sing Y 401 N doub N 402 N sing Y 403 N sing N 404 N sing N 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N sing N 410 N sing N 411 N sing N 412 N sing N 413 N sing N 414 N doub N 415 N sing N 416 N sing N 417 N sing N 418 N sing N 419 N sing N 420 N sing N 421 N sing N 422 N sing N 423 N sing N 424 N sing N 425 N sing US ACS Med Chem Lett 1948-5875 4 466 469 10.1021/ml4000657 24900694 Discovery of RG7112: A Small-Molecule MDM2 Inhibitor in Clinical Development. 2013 US Cancer Res. CNREA8 0400 0008-5472 73 2587 2597 10.1158/0008-5472.CAN-12-2807 23400593 MDM2 Small-Molecule Antagonist RG7112 Activates p53 Signaling and Regresses Human Tumors in Preclinical Cancer Models. 2013 US Science SCIEAS 0038 0036-8075 303 844 848 10.1126/science.1092472 14704432 In vivo activation of the p53 pathway by small-molecule antagonists of MDM2. 2004 10.2210/pdb4j3e/pdb pdb_00004j3e 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD 2004-04-19 ADSC QUANTUM 4 SINGLE WAVELENGTH M x-ray 1 1.0000 1.0 X8C NSLS 1.0000 SYNCHROTRON NSLS BEAMLINE X8C 9962.615 E3 ubiquitin-protein ligase Mdm2 6.3.2.- N-terminal domain (UNP residues 21-105) I50L, P92H, L95I 1 man polymer 581.490 4-({(4S,5R)-4,5-bis(4-chlorophenyl)-2-[4-methoxy-2-(propan-2-yloxy)phenyl]-4,5-dihydro-1H-imidazol-1-yl}carbonyl)piperazin-2-one 1 syn non-polymer 96.063 SULFATE ION 1 syn non-polymer 18.015 water 128 nat water Double minute 2 protein, Xdm2, p53-binding protein Mdm2 no no MEKLVQPTPLLLSLLKSAGAQKETFTMKEVLYHLGQYIMAKQLYDEKQQHIVHCSNDPLGELFGVQEFSVKEHRRIYAMI SRNLVS MEKLVQPTPLLLSLLKSAGAQKETFTMKEVLYHLGQYIMAKQLYDEKQQHIVHCSNDPLGELFGVQEFSVKEHRRIYAMI SRNLVS A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n clawed frog,common platanna,platanna sample mdm2 8355 Xenopus laevis 511693 Escherichia coli BL21 PLASMID PUBS 520 1 2.45 49.70 VAPOR DIFFUSION, HANGING DROP 6.0 100 mM ADA, pH 6, 50% SATURATED AMMONIUM SULFATE, 5% PEG200, 5 mM DTT RESERVOIR MIXED IN EQUAL VOLUME WITH THE PROTEIN AT 10 mg/mL, VAPOR DIFFUSION, HANGING DROP, temperature 278K 278 chem_comp_atom chem_comp_bond database_2 struct_ref_seq_dif struct_site repository Initial release Database references Data collection Database references Derived calculations 1 0 2013-04-24 1 1 2014-10-08 1 2 2024-02-28 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id SAME PROTEIN COMPLEXED WITH RO5045337 HUMAN MDM2 COMPLEXED WITH NUTLIN-2 RCSB Y RCSB 2013-02-05 REL REL NUT 4-({(4S,5R)-4,5-bis(4-chlorophenyl)-2-[4-methoxy-2-(propan-2-yloxy)phenyl]-4,5-dihydro-1H-imidazol-1-yl}carbonyl)piperazin-2-one SO4 SULFATE ION HOH water LIG 1 2 NUT NUT 201 A SO4 201 3 SO4 SO4 202 A HOH 1 4 HOH HOH 301 A HOH 2 4 HOH HOH 302 A HOH 3 4 HOH HOH 303 A HOH 4 4 HOH HOH 304 A HOH 5 4 HOH HOH 305 A HOH 6 4 HOH HOH 306 A HOH 7 4 HOH HOH 307 A HOH 8 4 HOH HOH 308 A HOH 9 4 HOH HOH 309 A HOH 10 4 HOH HOH 310 A HOH 11 4 HOH HOH 311 A HOH 12 4 HOH HOH 312 A HOH 13 4 HOH HOH 313 A HOH 14 4 HOH HOH 314 A HOH 15 4 HOH HOH 315 A HOH 16 4 HOH HOH 316 A HOH 17 4 HOH HOH 317 A HOH 18 4 HOH HOH 318 A HOH 19 4 HOH HOH 319 A HOH 20 4 HOH HOH 320 A HOH 21 4 HOH HOH 321 A HOH 22 4 HOH HOH 322 A HOH 23 4 HOH HOH 323 A HOH 24 4 HOH HOH 324 A HOH 25 4 HOH HOH 325 A HOH 26 4 HOH HOH 326 A HOH 27 4 HOH HOH 327 A HOH 28 4 HOH HOH 328 A HOH 29 4 HOH HOH 329 A HOH 30 4 HOH HOH 330 A HOH 31 4 HOH HOH 331 A HOH 32 4 HOH HOH 332 A HOH 33 4 HOH HOH 333 A HOH 34 4 HOH HOH 334 A HOH 35 4 HOH HOH 335 A HOH 36 4 HOH HOH 336 A HOH 37 4 HOH HOH 337 A HOH 38 4 HOH HOH 338 A HOH 39 4 HOH HOH 339 A HOH 40 4 HOH HOH 340 A HOH 41 4 HOH HOH 341 A HOH 42 4 HOH HOH 342 A HOH 43 4 HOH HOH 343 A HOH 44 4 HOH HOH 344 A HOH 45 4 HOH HOH 345 A HOH 46 4 HOH HOH 346 A HOH 47 4 HOH HOH 347 A HOH 48 4 HOH HOH 348 A HOH 49 4 HOH HOH 349 A HOH 50 4 HOH HOH 350 A HOH 51 4 HOH HOH 351 A HOH 52 4 HOH HOH 352 A HOH 53 4 HOH HOH 353 A HOH 54 4 HOH HOH 354 A HOH 55 4 HOH HOH 355 A HOH 56 4 HOH HOH 356 A HOH 57 4 HOH HOH 357 A HOH 58 4 HOH HOH 358 A HOH 59 4 HOH HOH 359 A HOH 60 4 HOH HOH 360 A HOH 61 4 HOH HOH 361 A HOH 62 4 HOH HOH 362 A HOH 63 4 HOH HOH 363 A HOH 64 4 HOH HOH 364 A HOH 65 4 HOH HOH 365 A HOH 66 4 HOH HOH 366 A HOH 67 4 HOH HOH 367 A HOH 68 4 HOH HOH 368 A HOH 69 4 HOH HOH 369 A HOH 70 4 HOH HOH 370 A HOH 71 4 HOH HOH 371 A HOH 72 4 HOH HOH 372 A HOH 73 4 HOH HOH 373 A HOH 74 4 HOH HOH 374 A HOH 75 4 HOH HOH 375 A HOH 76 4 HOH HOH 376 A HOH 77 4 HOH HOH 377 A HOH 78 4 HOH HOH 378 A HOH 79 4 HOH HOH 379 A HOH 80 4 HOH HOH 380 A HOH 81 4 HOH HOH 381 A HOH 82 4 HOH HOH 382 A HOH 83 4 HOH HOH 383 A HOH 84 4 HOH HOH 384 A HOH 85 4 HOH HOH 385 A HOH 86 4 HOH HOH 386 A HOH 87 4 HOH HOH 387 A HOH 88 4 HOH HOH 388 A HOH 89 4 HOH HOH 389 A HOH 90 4 HOH HOH 390 A HOH 91 4 HOH HOH 391 A HOH 92 4 HOH HOH 392 A HOH 93 4 HOH HOH 393 A HOH 94 4 HOH HOH 394 A HOH 95 4 HOH HOH 395 A HOH 96 4 HOH HOH 396 A HOH 97 4 HOH HOH 397 A HOH 98 4 HOH HOH 398 A HOH 99 4 HOH HOH 399 A HOH 100 4 HOH HOH 400 A HOH 101 4 HOH HOH 401 A HOH 102 4 HOH HOH 402 A HOH 103 4 HOH HOH 403 A HOH 104 4 HOH HOH 404 A HOH 105 4 HOH HOH 405 A HOH 106 4 HOH HOH 406 A HOH 107 4 HOH HOH 407 A HOH 108 4 HOH HOH 408 A HOH 109 4 HOH HOH 409 A HOH 110 4 HOH HOH 410 A HOH 111 4 HOH HOH 411 A HOH 112 4 HOH HOH 412 A HOH 113 4 HOH HOH 413 A HOH 114 4 HOH HOH 414 A HOH 115 4 HOH HOH 415 A HOH 116 4 HOH HOH 416 A HOH 117 4 HOH HOH 417 A HOH 118 4 HOH HOH 418 A HOH 119 4 HOH HOH 419 A HOH 120 4 HOH HOH 420 A HOH 121 4 HOH HOH 421 A HOH 122 4 HOH HOH 422 A HOH 123 4 HOH HOH 423 A HOH 124 4 HOH HOH 424 A HOH 125 4 HOH HOH 425 A HOH 126 4 HOH HOH 426 A HOH 127 4 HOH HOH 427 A HOH 128 4 HOH HOH 428 A MET 20 n 1 MET 20 A GLU 21 n 2 GLU 21 A LYS 22 n 3 LYS 22 A LEU 23 n 4 LEU 23 A VAL 24 n 5 VAL 24 A GLN 25 n 6 GLN 25 A PRO 26 n 7 PRO 26 A THR 27 n 8 THR 27 A PRO 28 n 9 PRO 28 A LEU 29 n 10 LEU 29 A LEU 30 n 11 LEU 30 A LEU 31 n 12 LEU 31 A SER 32 n 13 SER 32 A LEU 33 n 14 LEU 33 A LEU 34 n 15 LEU 34 A LYS 35 n 16 LYS 35 A SER 36 n 17 SER 36 A ALA 37 n 18 ALA 37 A GLY 38 n 19 GLY 38 A ALA 39 n 20 ALA 39 A GLN 40 n 21 GLN 40 A LYS 41 n 22 LYS 41 A GLU 42 n 23 GLU 42 A THR 43 n 24 THR 43 A PHE 44 n 25 PHE 44 A THR 45 n 26 THR 45 A MET 46 n 27 MET 46 A LYS 47 n 28 LYS 47 A GLU 48 n 29 GLU 48 A VAL 49 n 30 VAL 49 A LEU 50 n 31 LEU 50 A TYR 51 n 32 TYR 51 A HIS 52 n 33 HIS 52 A LEU 53 n 34 LEU 53 A GLY 54 n 35 GLY 54 A GLN 55 n 36 GLN 55 A TYR 56 n 37 TYR 56 A ILE 57 n 38 ILE 57 A MET 58 n 39 MET 58 A ALA 59 n 40 ALA 59 A LYS 60 n 41 LYS 60 A GLN 61 n 42 GLN 61 A LEU 62 n 43 LEU 62 A TYR 63 n 44 TYR 63 A ASP 64 n 45 ASP 64 A GLU 65 n 46 GLU 65 A LYS 66 n 47 LYS 66 A GLN 67 n 48 GLN 67 A GLN 68 n 49 GLN 68 A HIS 69 n 50 HIS 69 A ILE 70 n 51 ILE 70 A VAL 71 n 52 VAL 71 A HIS 72 n 53 HIS 72 A CYS 73 n 54 CYS 73 A SER 74 n 55 SER 74 A ASN 75 n 56 ASN 75 A ASP 76 n 57 ASP 76 A PRO 77 n 58 PRO 77 A LEU 78 n 59 LEU 78 A GLY 79 n 60 GLY 79 A GLU 80 n 61 GLU 80 A LEU 81 n 62 LEU 81 A PHE 82 n 63 PHE 82 A GLY 83 n 64 GLY 83 A VAL 84 n 65 VAL 84 A GLN 85 n 66 GLN 85 A GLU 86 n 67 GLU 86 A PHE 87 n 68 PHE 87 A SER 88 n 69 SER 88 A VAL 89 n 70 VAL 89 A LYS 90 n 71 LYS 90 A GLU 91 n 72 GLU 91 A HIS 92 n 73 HIS 92 A ARG 93 n 74 ARG 93 A ARG 94 n 75 ARG 94 A ILE 95 n 76 ILE 95 A TYR 96 n 77 TYR 96 A ALA 97 n 78 ALA 97 A MET 98 n 79 MET 98 A ILE 99 n 80 ILE 99 A SER 100 n 81 SER 100 A ARG 101 n 82 ARG 101 A ASN 102 n 83 ASN 102 A LEU 103 n 84 LEU 103 A VAL 104 n 85 VAL 104 A SER 105 n 86 SER 105 A 0.196 0.194 0.012 0.239 384 5.1 author_and_software_defined_assembly PISA 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N VAL 71 A N VAL 52 A O PHE 87 A O PHE 68 1 A HOH 423 D HOH protein_rep.para protein.top water_rep.param water.top ion.param ion.top RO4435385.prx RO4435385.tpx 14.6 -0.59 0.00 0.00 -0.39 0.00 0.98 0.239 0.012 0.194 0.196 1.91 24.63 384 7488 7488 5.1 95.6 RANDOM 1199476.88 0.000000 1 RESTRAINED THROUGHOUT 0.0 MOLECULAR REPLACEMENT Engh & Huber FLAT MODEL 46.8571 0.355977 0.26 0.20 5.00 0.13 0.05 1.91 24.63 128 871 45 0 698 0.004 1.1 20.9 1.13 1.40 1.50 2.16 2.00 2.24 2.00 3.20 2.50 1 NONE 1 X-RAY DIFFRACTION 0.238 0.170 2.00 48 785 0.243 0.192 2.10 54 901 0.293 0.206 2.23 42 904 0.226 0.196 2.41 48 894 0.233 0.189 2.65 48 910 0.293 0.206 3.03 46 900 0.224 0.187 3.82 48 906 0.214 0.196 50 50 985 904 6.1 10.1 1.91 50. 4J3E 7488 0.000 0.039 1 46.1 3.8 95.3 0.064 1.91 1.98 29.8 1 2.9 85.9 0.030 4.11 50 53.8 1 3.9 89.8 0.034 3.27 4.11 54.2 1 4.0 94.7 0.036 2.85 3.27 53.0 1 4.0 96.2 0.039 2.59 2.85 50.4 1 4.0 97.2 0.045 2.41 2.59 50.6 1 4.0 97.4 0.051 2.26 2.41 47.8 1 4.0 97.8 0.056 2.15 2.26 45.7 1 4.0 97.9 0.059 2.06 2.15 42.3 1 3.9 98.6 0.060 1.98 2.06 37.9 1 3.6 98.2 data collection HKL-2000 phasing MOLREP refinement CNX 2005 data reduction HKL-2000 data scaling HKL-2000 The 1.9A crystal structure of humanized Xenopus Mdm2 with nutlin-3a 1 N N 2 N N 3 N N 4 N N A THR 27 A THR 8 HELX_P A ALA 37 A ALA 18 1 1 11 A THR 45 A THR 26 HELX_P A GLN 61 A GLN 42 1 2 17 A PRO 77 A PRO 58 HELX_P A GLY 83 A GLY 64 1 3 7 A GLU 91 A GLU 72 HELX_P A ARG 101 A ARG 82 1 4 11 LIGASE/ANTAGONIST Mdm2, protein-protein interaction, imidazoline, ligase-antagonist complex, E3 ubiquitin ligase, p53, nucleus MDM2_XENLA UNP 1 21 P56273 EKLVQPTPLLLSLLKSAGAQKETFTMKEVIYHLGQYIMAKQLYDEKQQHIVHCSNDPLGELFGVQEFSVKEPRRLYAMIS RNLVS 21 105 4J3E 21 105 P56273 A 1 2 86 1 initiating methionine MET 20 4J3E A P56273 UNP 1 1 ILE engineered mutation LEU 50 4J3E A P56273 UNP 50 31 1 PRO engineered mutation HIS 92 4J3E A P56273 UNP 92 73 1 LEU engineered mutation ILE 95 4J3E A P56273 UNP 95 76 2 anti-parallel A ILE 70 A ILE 51 A HIS 72 A HIS 53 A GLU 86 A GLU 67 A SER 88 A SER 69 BINDING SITE FOR RESIDUE NUT A 201 A NUT 201 Software 14 BINDING SITE FOR RESIDUE SO4 A 202 A SO4 202 Software 10 A LEU 50 A LEU 31 14 1_555 A LEU 53 A LEU 34 14 1_555 A GLY 54 A GLY 35 14 1_555 A GLN 55 A GLN 36 14 1_555 A GLN 55 A GLN 36 14 4_566 A ILE 57 A ILE 38 14 1_555 A MET 58 A MET 39 14 1_555 A VAL 89 A VAL 70 14 1_555 A HIS 92 A HIS 73 14 1_555 A ILE 95 A ILE 76 14 1_555 A TYR 96 A TYR 77 14 1_555 A HOH 306 D HOH 14 1_555 A HOH 308 D HOH 14 1_555 A HOH 347 D HOH 14 1_555 A MET 20 A MET 1 10 8_456 A ASN 75 A ASN 56 10 8_556 A GLU 91 A GLU 72 10 1_555 A HIS 92 A HIS 73 10 1_555 A ARG 93 A ARG 74 10 1_555 A ARG 94 A ARG 75 10 1_555 A HOH 311 D HOH 10 8_556 A HOH 335 D HOH 10 1_555 A HOH 341 D HOH 10 1_555 A HOH 388 D HOH 10 1_555 20 C 2 2 21