0.006096
0.000000
0.000000
0.000000
0.006096
0.000000
0.000000
0.000000
0.007390
0.000000
0.000000
0.000000
Siu, K.K.
Sultana, A.
Lee, J.E.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
32
90.000
90.000
90.000
164.046
164.046
135.315
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Zn 2
65.409
ZINC ION
non-polymer
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
N
N
159
S
C
N
160
N
C
N
161
N
O
N
162
S
C
N
163
N
C
N
164
N
C
N
165
N
C
N
166
N
O
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
N
N
181
S
C
N
182
N
C
N
183
N
O
N
184
N
C
N
185
N
C
N
186
N
C
N
187
N
C
N
188
N
O
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
N
N
203
S
C
N
204
N
C
N
205
N
O
N
206
N
C
N
207
N
C
N
208
N
C
N
209
N
C
N
210
N
N
N
211
N
O
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
N
N
228
S
C
N
229
N
C
N
230
N
O
N
231
N
C
N
232
N
C
N
233
N
S
N
234
N
C
N
235
N
O
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
N
N
248
S
C
N
249
N
C
N
250
N
O
N
251
N
C
Y
252
N
C
Y
253
N
C
Y
254
N
C
Y
255
N
C
Y
256
N
C
Y
257
N
C
N
258
N
O
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
N
N
271
S
C
N
272
N
C
N
273
N
O
N
274
N
C
N
275
N
C
N
276
N
C
N
277
N
O
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
N
N
288
S
C
N
289
N
C
N
290
N
O
N
291
N
C
N
292
N
O
N
293
N
O
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
N
N
302
S
C
N
303
N
C
N
304
N
O
N
305
R
C
N
306
N
O
N
307
N
C
N
308
N
O
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
N
N
319
S
C
N
320
N
C
N
321
N
O
N
322
N
C
Y
323
N
C
Y
324
N
C
Y
325
N
C
Y
326
N
N
Y
327
N
C
Y
328
N
C
Y
329
N
C
Y
330
N
C
Y
331
N
C
N
332
N
O
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
N
N
346
S
C
N
347
N
C
N
348
N
O
N
349
N
C
Y
350
N
C
Y
351
N
C
Y
352
N
C
Y
353
N
C
Y
354
N
C
Y
355
N
C
N
356
N
O
N
357
N
O
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
N
N
370
S
C
N
371
N
C
N
372
N
O
N
373
N
C
N
374
N
C
N
375
N
C
N
376
N
O
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
ZN
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
doub
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
doub
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
doub
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
doub
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
doub
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
Y
246
N
doub
Y
247
N
sing
Y
248
N
sing
N
249
N
sing
Y
250
N
doub
N
251
N
sing
Y
252
N
doub
N
253
N
sing
Y
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
doub
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
doub
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
doub
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
doub
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
Y
315
N
doub
Y
316
N
sing
Y
317
N
sing
N
318
N
sing
Y
319
N
doub
Y
320
N
sing
Y
321
N
sing
N
322
N
sing
Y
323
N
sing
Y
324
N
doub
N
325
N
sing
Y
326
N
doub
N
327
N
sing
Y
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
doub
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
Y
343
N
doub
Y
344
N
sing
Y
345
N
sing
N
346
N
sing
Y
347
N
doub
N
348
N
sing
Y
349
N
doub
N
350
N
sing
Y
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
doub
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
UK
Nat Commun
2041-1723
4
2593
2593
10.1038/ncomms3593
24185281
Structural determinants of HIV-1 Vif susceptibility and DNA binding in APOBEC3F.
2013
10.2210/pdb4j4j/pdb
pdb_00004j4j
100
1
CCD
ADSC QUANTUM 315r
rotory beam shutters
SINGLE WAVELENGTH
M
x-ray
1
0.97921
1.0
24-ID-E
APS
0.97921
SYNCHROTRON
APS BEAMLINE 24-ID-E
24919.762
DNA dC->dU-editing enzyme APOBEC-3F
3.5.4.5
UNP residues 218-373
2
man
polymer
65.409
ZINC ION
2
syn
non-polymer
Apolipoprotein B mRNA-editing enzyme catalytic polypeptide-like 3F
no
no
MAHHHHHHVDDDDKMLVPRGSENLYFQGSAMDPPTFTFNFNNEPWVRGRHETYLCFTMEVVKHHSPVSWKRGVFRNQVDP
ETHCHAERCFLSWFCDDILSPNTNYEVTWYTSWSPCPECAGEVAEFLARHSNVNLTIFTARLYYFWDTDYQEGLRSLSQE
GASVEIMGYKDFKYCWENFVYNDDEPFKPWKGLKYNFLFLDSKLQEILE
MAHHHHHHVDDDDKMLVPRGSENLYFQGSAMDPPTFTFNFNNEPWVRGRHETYLCFTMEVVKHHSPVSWKRGVFRNQVDP
ETHCHAERCFLSWFCDDILSPNTNYEVTWYTSWSPCPECAGEVAEFLARHSNVNLTIFTARLYYFWDTDYQEGLRSLSQE
GASVEIMGYKDFKYCWENFVYNDDEPFKPWKGLKYNFLFLDSKLQEILE
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
sample
APOBEC3F
9606
Homo sapiens
562
Escherichia coli
Rosetta 2 (DE3)
plasmid
pET46 Ek/LIC
1
4.57
73.06
VAPOR DIFFUSION, HANGING DROP
9.0
18% (w/v) PEG 8000, 0.1 M CHES pH 9.0, 25% (w/v) glucose, VAPOR DIFFUSION, HANGING DROP, temperature 298K
298
chem_comp_atom
chem_comp_bond
database_2
pdbx_struct_conn_angle
struct_conn
struct_ref_seq_dif
struct_site
repository
Initial release
Database references
Data collection
Database references
Derived calculations
1
0
2013-11-06
1
1
2013-11-20
1
2
2024-02-28
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_label_asym_id
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
RCSB
2013-02-06
REL
REL
ZN
ZINC ION
ZN
2
2
ZN
ZN
401
A
ZN
1
2
ZN
ZN
401
B
n
1
-53
A
n
2
-52
A
n
3
-51
A
n
4
-50
A
n
5
-49
A
n
6
-48
A
n
7
-47
A
n
8
-46
A
n
9
-45
A
n
10
-44
A
n
11
-43
A
n
12
-42
A
n
13
-41
A
n
14
-40
A
n
15
-39
A
n
16
-38
A
n
17
-37
A
n
18
-36
A
n
19
-35
A
n
20
-34
A
n
21
-33
A
n
22
-32
A
n
23
-31
A
n
24
-30
A
n
25
-29
A
n
26
-28
A
GLN
-27
n
27
GLN
-27
A
GLY
-26
n
28
GLY
-26
A
SER
-25
n
29
SER
-25
A
ALA
-24
n
30
ALA
-24
A
MET
-23
n
31
MET
-23
A
ASP
-22
n
32
ASP
-22
A
PRO
-21
n
33
PRO
-21
A
PRO
-20
n
34
PRO
-20
A
THR
-19
n
35
THR
-19
A
PHE
-18
n
36
PHE
-18
A
THR
-17
n
37
THR
-17
A
PHE
-16
n
38
PHE
-16
A
ASN
-15
n
39
ASN
-15
A
PHE
-14
n
40
PHE
-14
A
ASN
-13
n
41
ASN
-13
A
ASN
-12
n
42
ASN
-12
A
GLU
-11
n
43
GLU
-11
A
PRO
-10
n
44
PRO
-10
A
TRP
-9
n
45
TRP
-9
A
VAL
-8
n
46
VAL
-8
A
ALA
-7
n
47
ARG
-7
A
GLY
-6
n
48
GLY
-6
A
ARG
-5
n
49
ARG
-5
A
HIS
-4
n
50
HIS
-4
A
GLU
-3
n
51
GLU
-3
A
THR
-2
n
52
THR
-2
A
TYR
-1
n
53
TYR
-1
A
LEU
218
n
54
LEU
218
A
CYS
219
n
55
CYS
219
A
PHE
220
n
56
PHE
220
A
THR
221
n
57
THR
221
A
MET
222
n
58
MET
222
A
GLU
223
n
59
GLU
223
A
VAL
224
n
60
VAL
224
A
VAL
225
n
61
VAL
225
A
LYS
226
n
62
LYS
226
A
HIS
227
n
63
HIS
227
A
HIS
228
n
64
HIS
228
A
SER
229
n
65
SER
229
A
PRO
230
n
66
PRO
230
A
VAL
231
n
67
VAL
231
A
SER
232
n
68
SER
232
A
TRP
233
n
69
TRP
233
A
LYS
234
n
70
LYS
234
A
ARG
235
n
71
ARG
235
A
GLY
236
n
72
GLY
236
A
VAL
237
n
73
VAL
237
A
PHE
238
n
74
PHE
238
A
ARG
239
n
75
ARG
239
A
ASN
240
n
76
ASN
240
A
GLN
241
n
77
GLN
241
A
VAL
242
n
78
VAL
242
A
ASP
243
n
79
ASP
243
A
PRO
244
n
80
PRO
244
A
GLU
245
n
81
GLU
245
A
THR
246
n
82
THR
246
A
ALA
247
n
83
HIS
247
A
CYS
248
n
84
CYS
248
A
HIS
249
n
85
HIS
249
A
ALA
250
n
86
ALA
250
A
GLU
251
n
87
GLU
251
A
ARG
252
n
88
ARG
252
A
CYS
253
n
89
CYS
253
A
PHE
254
n
90
PHE
254
A
LEU
255
n
91
LEU
255
A
SER
256
n
92
SER
256
A
TRP
257
n
93
TRP
257
A
PHE
258
n
94
PHE
258
A
CYS
259
n
95
CYS
259
A
ASP
260
n
96
ASP
260
A
ASP
261
n
97
ASP
261
A
ILE
262
n
98
ILE
262
A
LEU
263
n
99
LEU
263
A
SER
264
n
100
SER
264
A
PRO
265
n
101
PRO
265
A
ASN
266
n
102
ASN
266
A
THR
267
n
103
THR
267
A
ASN
268
n
104
ASN
268
A
TYR
269
n
105
TYR
269
A
GLU
270
n
106
GLU
270
A
VAL
271
n
107
VAL
271
A
THR
272
n
108
THR
272
A
TRP
273
n
109
TRP
273
A
TYR
274
n
110
TYR
274
A
THR
275
n
111
THR
275
A
SER
276
n
112
SER
276
A
TRP
277
n
113
TRP
277
A
SER
278
n
114
SER
278
A
PRO
279
n
115
PRO
279
A
CYS
280
n
116
CYS
280
A
PRO
281
n
117
PRO
281
A
GLU
282
n
118
GLU
282
A
CYS
283
n
119
CYS
283
A
ALA
284
n
120
ALA
284
A
GLY
285
n
121
GLY
285
A
GLU
286
n
122
GLU
286
A
VAL
287
n
123
VAL
287
A
ALA
288
n
124
ALA
288
A
GLU
289
n
125
GLU
289
A
PHE
290
n
126
PHE
290
A
LEU
291
n
127
LEU
291
A
ALA
292
n
128
ALA
292
A
ARG
293
n
129
ARG
293
A
HIS
294
n
130
HIS
294
A
SER
295
n
131
SER
295
A
ASN
296
n
132
ASN
296
A
VAL
297
n
133
VAL
297
A
ASN
298
n
134
ASN
298
A
LEU
299
n
135
LEU
299
A
THR
300
n
136
THR
300
A
ILE
301
n
137
ILE
301
A
PHE
302
n
138
PHE
302
A
THR
303
n
139
THR
303
A
ALA
304
n
140
ALA
304
A
ARG
305
n
141
ARG
305
A
LEU
306
n
142
LEU
306
A
TYR
307
n
143
TYR
307
A
TYR
308
n
144
TYR
308
A
PHE
309
n
145
PHE
309
A
TRP
310
n
146
TRP
310
A
ASP
311
n
147
ASP
311
A
THR
312
n
148
THR
312
A
ASP
313
n
149
ASP
313
A
TYR
314
n
150
TYR
314
A
GLN
315
n
151
GLN
315
A
GLU
316
n
152
GLU
316
A
GLY
317
n
153
GLY
317
A
LEU
318
n
154
LEU
318
A
ARG
319
n
155
ARG
319
A
SER
320
n
156
SER
320
A
LEU
321
n
157
LEU
321
A
SER
322
n
158
SER
322
A
ALA
323
n
159
GLN
323
A
GLU
324
n
160
GLU
324
A
GLY
325
n
161
GLY
325
A
ALA
326
n
162
ALA
326
A
SER
327
n
163
SER
327
A
VAL
328
n
164
VAL
328
A
GLU
329
n
165
GLU
329
A
ILE
330
n
166
ILE
330
A
MET
331
n
167
MET
331
A
GLY
332
n
168
GLY
332
A
TYR
333
n
169
TYR
333
A
LYS
334
n
170
LYS
334
A
ASP
335
n
171
ASP
335
A
PHE
336
n
172
PHE
336
A
LYS
337
n
173
LYS
337
A
TYR
338
n
174
TYR
338
A
CYS
339
n
175
CYS
339
A
TRP
340
n
176
TRP
340
A
GLU
341
n
177
GLU
341
A
ASN
342
n
178
ASN
342
A
PHE
343
n
179
PHE
343
A
VAL
344
n
180
VAL
344
A
TYR
345
n
181
TYR
345
A
ASN
346
n
182
ASN
346
A
ASP
347
n
183
ASP
347
A
ASP
348
n
184
ASP
348
A
GLU
349
n
185
GLU
349
A
PRO
350
n
186
PRO
350
A
PHE
351
n
187
PHE
351
A
LYS
352
n
188
LYS
352
A
PRO
353
n
189
PRO
353
A
TRP
354
n
190
TRP
354
A
LYS
355
n
191
LYS
355
A
GLY
356
n
192
GLY
356
A
LEU
357
n
193
LEU
357
A
LYS
358
n
194
LYS
358
A
TYR
359
n
195
TYR
359
A
ASN
360
n
196
ASN
360
A
PHE
361
n
197
PHE
361
A
LEU
362
n
198
LEU
362
A
PHE
363
n
199
PHE
363
A
LEU
364
n
200
LEU
364
A
ASP
365
n
201
ASP
365
A
SER
366
n
202
SER
366
A
LYS
367
n
203
LYS
367
A
LEU
368
n
204
LEU
368
A
GLN
369
n
205
GLN
369
A
GLU
370
n
206
GLU
370
A
ILE
371
n
207
ILE
371
A
LEU
372
n
208
LEU
372
A
ALA
373
n
209
GLU
373
A
n
1
-53
B
n
2
-52
B
n
3
-51
B
n
4
-50
B
n
5
-49
B
n
6
-48
B
n
7
-47
B
n
8
-46
B
n
9
-45
B
n
10
-44
B
n
11
-43
B
n
12
-42
B
n
13
-41
B
n
14
-40
B
n
15
-39
B
n
16
-38
B
n
17
-37
B
n
18
-36
B
n
19
-35
B
n
20
-34
B
n
21
-33
B
n
22
-32
B
n
23
-31
B
n
24
-30
B
n
25
-29
B
n
26
-28
B
GLN
-27
n
27
GLN
-27
B
GLY
-26
n
28
GLY
-26
B
SER
-25
n
29
SER
-25
B
ALA
-24
n
30
ALA
-24
B
MET
-23
n
31
MET
-23
B
ASP
-22
n
32
ASP
-22
B
PRO
-21
n
33
PRO
-21
B
PRO
-20
n
34
PRO
-20
B
THR
-19
n
35
THR
-19
B
PHE
-18
n
36
PHE
-18
B
THR
-17
n
37
THR
-17
B
PHE
-16
n
38
PHE
-16
B
ASN
-15
n
39
ASN
-15
B
PHE
-14
n
40
PHE
-14
B
ASN
-13
n
41
ASN
-13
B
ASN
-12
n
42
ASN
-12
B
GLU
-11
n
43
GLU
-11
B
PRO
-10
n
44
PRO
-10
B
TRP
-9
n
45
TRP
-9
B
VAL
-8
n
46
VAL
-8
B
ALA
-7
n
47
ARG
-7
B
GLY
-6
n
48
GLY
-6
B
ARG
-5
n
49
ARG
-5
B
HIS
-4
n
50
HIS
-4
B
GLU
-3
n
51
GLU
-3
B
THR
-2
n
52
THR
-2
B
TYR
-1
n
53
TYR
-1
B
LEU
218
n
54
LEU
218
B
CYS
219
n
55
CYS
219
B
PHE
220
n
56
PHE
220
B
THR
221
n
57
THR
221
B
MET
222
n
58
MET
222
B
GLU
223
n
59
GLU
223
B
VAL
224
n
60
VAL
224
B
VAL
225
n
61
VAL
225
B
LYS
226
n
62
LYS
226
B
HIS
227
n
63
HIS
227
B
HIS
228
n
64
HIS
228
B
SER
229
n
65
SER
229
B
PRO
230
n
66
PRO
230
B
VAL
231
n
67
VAL
231
B
SER
232
n
68
SER
232
B
TRP
233
n
69
TRP
233
B
LYS
234
n
70
LYS
234
B
ARG
235
n
71
ARG
235
B
GLY
236
n
72
GLY
236
B
VAL
237
n
73
VAL
237
B
PHE
238
n
74
PHE
238
B
ARG
239
n
75
ARG
239
B
ASN
240
n
76
ASN
240
B
GLN
241
n
77
GLN
241
B
VAL
242
n
78
VAL
242
B
ASP
243
n
79
ASP
243
B
PRO
244
n
80
PRO
244
B
GLU
245
n
81
GLU
245
B
THR
246
n
82
THR
246
B
ALA
247
n
83
HIS
247
B
CYS
248
n
84
CYS
248
B
HIS
249
n
85
HIS
249
B
ALA
250
n
86
ALA
250
B
GLU
251
n
87
GLU
251
B
ARG
252
n
88
ARG
252
B
CYS
253
n
89
CYS
253
B
PHE
254
n
90
PHE
254
B
LEU
255
n
91
LEU
255
B
SER
256
n
92
SER
256
B
TRP
257
n
93
TRP
257
B
PHE
258
n
94
PHE
258
B
CYS
259
n
95
CYS
259
B
ASP
260
n
96
ASP
260
B
ASP
261
n
97
ASP
261
B
ILE
262
n
98
ILE
262
B
LEU
263
n
99
LEU
263
B
SER
264
n
100
SER
264
B
PRO
265
n
101
PRO
265
B
ASN
266
n
102
ASN
266
B
THR
267
n
103
THR
267
B
ASN
268
n
104
ASN
268
B
TYR
269
n
105
TYR
269
B
GLU
270
n
106
GLU
270
B
VAL
271
n
107
VAL
271
B
THR
272
n
108
THR
272
B
TRP
273
n
109
TRP
273
B
TYR
274
n
110
TYR
274
B
THR
275
n
111
THR
275
B
SER
276
n
112
SER
276
B
TRP
277
n
113
TRP
277
B
SER
278
n
114
SER
278
B
PRO
279
n
115
PRO
279
B
CYS
280
n
116
CYS
280
B
PRO
281
n
117
PRO
281
B
GLU
282
n
118
GLU
282
B
CYS
283
n
119
CYS
283
B
ALA
284
n
120
ALA
284
B
GLY
285
n
121
GLY
285
B
GLU
286
n
122
GLU
286
B
VAL
287
n
123
VAL
287
B
ALA
288
n
124
ALA
288
B
GLU
289
n
125
GLU
289
B
PHE
290
n
126
PHE
290
B
LEU
291
n
127
LEU
291
B
ALA
292
n
128
ALA
292
B
ARG
293
n
129
ARG
293
B
HIS
294
n
130
HIS
294
B
SER
295
n
131
SER
295
B
ASN
296
n
132
ASN
296
B
VAL
297
n
133
VAL
297
B
ASN
298
n
134
ASN
298
B
LEU
299
n
135
LEU
299
B
THR
300
n
136
THR
300
B
ILE
301
n
137
ILE
301
B
PHE
302
n
138
PHE
302
B
THR
303
n
139
THR
303
B
ALA
304
n
140
ALA
304
B
ARG
305
n
141
ARG
305
B
LEU
306
n
142
LEU
306
B
TYR
307
n
143
TYR
307
B
TYR
308
n
144
TYR
308
B
PHE
309
n
145
PHE
309
B
TRP
310
n
146
TRP
310
B
ASP
311
n
147
ASP
311
B
THR
312
n
148
THR
312
B
ASP
313
n
149
ASP
313
B
TYR
314
n
150
TYR
314
B
GLN
315
n
151
GLN
315
B
GLU
316
n
152
GLU
316
B
GLY
317
n
153
GLY
317
B
LEU
318
n
154
LEU
318
B
ARG
319
n
155
ARG
319
B
SER
320
n
156
SER
320
B
LEU
321
n
157
LEU
321
B
SER
322
n
158
SER
322
B
ALA
323
n
159
GLN
323
B
GLU
324
n
160
GLU
324
B
GLY
325
n
161
GLY
325
B
ALA
326
n
162
ALA
326
B
SER
327
n
163
SER
327
B
VAL
328
n
164
VAL
328
B
GLU
329
n
165
GLU
329
B
ILE
330
n
166
ILE
330
B
MET
331
n
167
MET
331
B
GLY
332
n
168
GLY
332
B
TYR
333
n
169
TYR
333
B
LYS
334
n
170
LYS
334
B
ASP
335
n
171
ASP
335
B
PHE
336
n
172
PHE
336
B
LYS
337
n
173
LYS
337
B
TYR
338
n
174
TYR
338
B
CYS
339
n
175
CYS
339
B
TRP
340
n
176
TRP
340
B
GLU
341
n
177
GLU
341
B
ASN
342
n
178
ASN
342
B
PHE
343
n
179
PHE
343
B
VAL
344
n
180
VAL
344
B
TYR
345
n
181
TYR
345
B
ASN
346
n
182
ASN
346
B
ASP
347
n
183
ASP
347
B
ASP
348
n
184
ASP
348
B
GLU
349
n
185
GLU
349
B
PRO
350
n
186
PRO
350
B
PHE
351
n
187
PHE
351
B
LYS
352
n
188
LYS
352
B
PRO
353
n
189
PRO
353
B
TRP
354
n
190
TRP
354
B
LYS
355
n
191
LYS
355
B
GLY
356
n
192
GLY
356
B
LEU
357
n
193
LEU
357
B
LYS
358
n
194
LYS
358
B
TYR
359
n
195
TYR
359
B
ASN
360
n
196
ASN
360
B
PHE
361
n
197
PHE
361
B
LEU
362
n
198
LEU
362
B
PHE
363
n
199
PHE
363
B
LEU
364
n
200
LEU
364
B
ASP
365
n
201
ASP
365
B
SER
366
n
202
SER
366
B
LYS
367
n
203
LYS
367
B
LEU
368
n
204
LEU
368
B
GLN
369
n
205
GLN
369
B
GLU
370
n
206
GLU
370
B
ILE
371
n
207
ILE
371
B
LEU
372
n
208
LEU
372
B
ALA
373
n
209
GLU
373
B
1.9256
-0.6276
-0.8427
0.6099
1.2482
2.8217
-0.4371
-0.2404
-0.7725
-0.1853
0.2088
-0.4183
-0.0750
-0.1311
0.1672
0.8117
0.0664
0.5300
0.8051
-0.2172
1.3602
refined
181.6433
116.5010
58.1979
X-RAY DIFFRACTION
1.4032
0.2344
1.3154
2.0491
-0.5457
1.5221
0.6365
0.6307
0.3126
-0.6021
0.2185
-0.4504
-0.0015
0.4309
-0.6054
0.9710
0.1696
0.3978
0.8951
-0.1687
1.6090
refined
193.6435
117.6142
52.2656
X-RAY DIFFRACTION
5.0826
-1.1534
0.1364
3.5117
1.3094
6.0730
-0.0933
-0.2509
-0.0036
-0.1283
0.3142
-0.5638
-0.0110
0.2506
-0.0859
0.8117
0.5443
1.2390
0.8443
-0.3582
1.6496
refined
198.9463
121.5121
49.8519
X-RAY DIFFRACTION
1.3171
-0.1682
-0.8461
0.4359
0.2371
1.2368
0.0745
0.3387
-0.1678
-0.5754
-0.0519
-0.4297
-0.1403
-0.0871
-0.1179
1.0340
0.2630
1.0155
0.6756
-0.7449
1.3623
refined
184.6315
124.3320
45.2894
X-RAY DIFFRACTION
1.4034
-0.1222
0.6129
0.5348
0.1590
1.5953
0.0779
0.1549
-0.7691
-0.0492
0.0869
-0.1996
0.1230
-0.6759
0.0301
0.8918
-0.0025
0.3538
0.8564
-0.4841
1.7629
refined
176.3005
111.3184
51.2306
X-RAY DIFFRACTION
0.8016
-0.6031
1.2078
1.8349
0.1019
3.1535
-0.1026
-0.2641
-0.8509
0.0741
0.1645
-0.2239
-0.0507
-0.0823
0.2680
0.8251
0.1112
0.0734
0.8060
0.6066
1.5129
refined
184.2623
116.0906
78.7740
X-RAY DIFFRACTION
2.7402
1.0045
-0.9246
0.7537
0.8535
4.2680
0.1775
-0.4893
-0.6446
0.1314
0.2187
0.0118
0.7001
0.0224
-0.0958
0.7002
0.0354
0.3044
1.0385
0.4229
1.4731
refined
175.8400
113.2044
80.0416
X-RAY DIFFRACTION
6.4864
0.5254
0.4318
2.6228
1.4407
3.1726
-0.1077
-0.4562
-0.5541
0.2038
0.0535
0.3969
-0.2700
-0.1041
0.0656
1.0775
-0.0307
0.4451
0.7088
1.2324
1.4501
refined
169.3882
109.1987
85.3976
X-RAY DIFFRACTION
4.0412
2.8303
-2.1922
3.6179
-1.6902
2.4077
-0.1547
-0.4791
-0.6089
0.7726
-0.0722
-0.0149
0.0156
-0.0044
0.1097
0.9600
-0.0001
0.5714
0.9193
0.8374
1.2780
refined
175.9905
117.4696
88.8699
X-RAY DIFFRACTION
0.7065
1.0865
-0.7266
1.7704
-0.8942
2.1137
0.0089
-0.6982
-0.2309
0.7916
-0.2923
-0.1873
0.1162
-0.4329
-0.0059
1.0894
0.0292
0.2278
1.3457
0.8712
1.1097
refined
178.8455
124.1587
91.3108
X-RAY DIFFRACTION
1.6248
-0.8741
-0.6709
2.2347
1.3876
0.8742
-0.3820
-0.9412
-1.2147
0.1848
-0.2646
-0.1651
0.5500
0.2967
0.6193
0.7216
0.0026
-0.2822
0.9274
0.4011
1.4614
refined
186.0002
118.9381
92.1410
X-RAY DIFFRACTION
0.6234
-0.2310
0.5066
0.2840
-0.2858
0.4419
0.0916
0.1504
-0.6643
-0.1548
-0.1502
-0.3781
0.2149
0.0927
-0.0152
0.6783
0.2275
-0.1631
1.0005
0.7680
1.9470
refined
193.8829
118.1020
83.0232
X-RAY DIFFRACTION
A
0
A
0
X-RAY DIFFRACTION
1
chain 'A' and (resid -26 through 225 )
A
0
A
0
X-RAY DIFFRACTION
2
chain 'A' and (resid 226 through 249 )
A
0
A
0
X-RAY DIFFRACTION
3
chain 'A' and (resid 250 through 267 )
A
0
A
0
X-RAY DIFFRACTION
4
chain 'A' and (resid 268 through 323 )
A
0
A
0
X-RAY DIFFRACTION
5
chain 'A' and (resid 324 through 373 )
B
0
B
0
X-RAY DIFFRACTION
6
chain 'B' and (resid -26 through 228 )
B
0
B
0
X-RAY DIFFRACTION
7
chain 'B' and (resid 229 through 249 )
B
0
B
0
X-RAY DIFFRACTION
8
chain 'B' and (resid 250 through 267 )
B
0
B
0
X-RAY DIFFRACTION
9
chain 'B' and (resid 268 through 292 )
B
0
B
0
X-RAY DIFFRACTION
10
chain 'B' and (resid 293 through 324 )
B
0
B
0
X-RAY DIFFRACTION
11
chain 'B' and (resid 325 through 332 )
B
0
B
0
X-RAY DIFFRACTION
12
chain 'B' and (resid 333 through 373 )
author_and_software_defined_assembly
PISA
1
monomeric
author_and_software_defined_assembly
PISA
1
monomeric
A
HIS
249
A
ND1
HIS
85
1_555
A
ZN
401
C
ZN
ZN
1_555
A
CYS
280
A
SG
CYS
116
1_555
108.8
A
HIS
249
A
ND1
HIS
85
1_555
A
ZN
401
C
ZN
ZN
1_555
A
CYS
283
A
SG
CYS
119
1_555
81.8
A
CYS
280
A
SG
CYS
116
1_555
A
ZN
401
C
ZN
ZN
1_555
A
CYS
283
A
SG
CYS
119
1_555
87.8
B
HIS
249
B
ND1
HIS
85
1_555
B
ZN
401
D
ZN
ZN
1_555
B
CYS
280
B
SG
CYS
116
1_555
106.6
B
HIS
249
B
ND1
HIS
85
1_555
B
ZN
401
D
ZN
ZN
1_555
B
CYS
283
B
SG
CYS
119
1_555
87.9
B
CYS
280
B
SG
CYS
116
1_555
B
ZN
401
D
ZN
ZN
1_555
B
CYS
283
B
SG
CYS
119
1_555
88.4
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
LYS
234
A
O
LYS
70
A
N
MET
222
A
N
MET
58
A
N
THR
221
A
N
THR
57
A
O
THR
272
A
O
THR
108
A
N
TRP
273
A
N
TRP
109
A
O
PHE
302
A
O
PHE
138
A
N
ILE
301
A
N
ILE
137
A
O
SER
327
A
O
SER
163
B
O
PHE
238
B
O
PHE
74
B
N
LEU
218
B
N
LEU
54
B
N
GLU
223
B
N
GLU
59
B
O
GLU
270
B
O
GLU
106
B
N
TRP
273
B
N
TRP
109
B
O
PHE
302
B
O
PHE
138
B
N
ILE
301
B
N
ILE
137
B
O
SER
327
B
O
SER
163
1
A
CG
ARG
-7
A
CG
ARG
47
1
Y
1
A
CD
ARG
-7
A
CD
ARG
47
1
Y
1
A
NE
ARG
-7
A
NE
ARG
47
1
Y
1
A
CZ
ARG
-7
A
CZ
ARG
47
1
Y
1
A
NH1
ARG
-7
A
NH1
ARG
47
1
Y
1
A
NH2
ARG
-7
A
NH2
ARG
47
1
Y
1
A
CG
HIS
247
A
CG
HIS
83
1
Y
1
A
ND1
HIS
247
A
ND1
HIS
83
1
Y
1
A
CD2
HIS
247
A
CD2
HIS
83
1
Y
1
A
CE1
HIS
247
A
CE1
HIS
83
1
Y
1
A
NE2
HIS
247
A
NE2
HIS
83
1
Y
1
A
CG
GLN
323
A
CG
GLN
159
1
Y
1
A
CD
GLN
323
A
CD
GLN
159
1
Y
1
A
OE1
GLN
323
A
OE1
GLN
159
1
Y
1
A
NE2
GLN
323
A
NE2
GLN
159
1
Y
1
A
CG
ASP
348
A
CG
ASP
184
1
Y
1
A
OD1
ASP
348
A
OD1
ASP
184
1
Y
1
A
OD2
ASP
348
A
OD2
ASP
184
1
Y
1
A
CG
LYS
358
A
CG
LYS
194
1
Y
1
A
CD
LYS
358
A
CD
LYS
194
1
Y
1
A
CE
LYS
358
A
CE
LYS
194
1
Y
1
A
NZ
LYS
358
A
NZ
LYS
194
1
Y
1
A
CG
LYS
367
A
CG
LYS
203
1
Y
1
A
CD
LYS
367
A
CD
LYS
203
1
Y
1
A
CE
LYS
367
A
CE
LYS
203
1
Y
1
A
NZ
LYS
367
A
NZ
LYS
203
1
Y
1
A
CG
GLN
369
A
CG
GLN
205
1
Y
1
A
CD
GLN
369
A
CD
GLN
205
1
Y
1
A
OE1
GLN
369
A
OE1
GLN
205
1
Y
1
A
NE2
GLN
369
A
NE2
GLN
205
1
Y
1
A
CG
GLU
370
A
CG
GLU
206
1
Y
1
A
CD
GLU
370
A
CD
GLU
206
1
Y
1
A
OE1
GLU
370
A
OE1
GLU
206
1
Y
1
A
OE2
GLU
370
A
OE2
GLU
206
1
Y
1
A
CG
GLU
373
A
CG
GLU
209
1
Y
1
A
CD
GLU
373
A
CD
GLU
209
1
Y
1
A
OE1
GLU
373
A
OE1
GLU
209
1
Y
1
A
OE2
GLU
373
A
OE2
GLU
209
1
Y
1
B
CG
ARG
-7
B
CG
ARG
47
1
Y
1
B
CD
ARG
-7
B
CD
ARG
47
1
Y
1
B
NE
ARG
-7
B
NE
ARG
47
1
Y
1
B
CZ
ARG
-7
B
CZ
ARG
47
1
Y
1
B
NH1
ARG
-7
B
NH1
ARG
47
1
Y
1
B
NH2
ARG
-7
B
NH2
ARG
47
1
Y
1
B
CG
TRP
233
B
CG
TRP
69
1
Y
1
B
CD1
TRP
233
B
CD1
TRP
69
1
Y
1
B
CD2
TRP
233
B
CD2
TRP
69
1
Y
1
B
NE1
TRP
233
B
NE1
TRP
69
1
Y
1
B
CE2
TRP
233
B
CE2
TRP
69
1
Y
1
B
CE3
TRP
233
B
CE3
TRP
69
1
Y
1
B
CZ2
TRP
233
B
CZ2
TRP
69
1
Y
1
B
CZ3
TRP
233
B
CZ3
TRP
69
1
Y
1
B
CH2
TRP
233
B
CH2
TRP
69
1
Y
1
B
CG
GLU
245
B
CG
GLU
81
1
Y
1
B
CD
GLU
245
B
CD
GLU
81
1
Y
1
B
OE1
GLU
245
B
OE1
GLU
81
1
Y
1
B
OE2
GLU
245
B
OE2
GLU
81
1
Y
1
B
CG
HIS
247
B
CG
HIS
83
1
Y
1
B
ND1
HIS
247
B
ND1
HIS
83
1
Y
1
B
CD2
HIS
247
B
CD2
HIS
83
1
Y
1
B
CE1
HIS
247
B
CE1
HIS
83
1
Y
1
B
NE2
HIS
247
B
NE2
HIS
83
1
Y
1
B
CG
GLN
323
B
CG
GLN
159
1
Y
1
B
CD
GLN
323
B
CD
GLN
159
1
Y
1
B
OE1
GLN
323
B
OE1
GLN
159
1
Y
1
B
NE2
GLN
323
B
NE2
GLN
159
1
Y
1
B
CG
LYS
355
B
CG
LYS
191
1
Y
1
B
CD
LYS
355
B
CD
LYS
191
1
Y
1
B
CE
LYS
355
B
CE
LYS
191
1
Y
1
B
NZ
LYS
355
B
NZ
LYS
191
1
Y
1
B
CG
GLU
373
B
CG
GLU
209
1
Y
1
B
CD
GLU
373
B
CD
GLU
209
1
Y
1
B
OE1
GLU
373
B
OE1
GLU
209
1
Y
1
B
OE2
GLU
373
B
OE2
GLU
209
1
Y
1
A
MET
-53
A
MET
1
1
Y
1
A
ALA
-52
A
ALA
2
1
Y
1
A
HIS
-51
A
HIS
3
1
Y
1
A
HIS
-50
A
HIS
4
1
Y
1
A
HIS
-49
A
HIS
5
1
Y
1
A
HIS
-48
A
HIS
6
1
Y
1
A
HIS
-47
A
HIS
7
1
Y
1
A
HIS
-46
A
HIS
8
1
Y
1
A
VAL
-45
A
VAL
9
1
Y
1
A
ASP
-44
A
ASP
10
1
Y
1
A
ASP
-43
A
ASP
11
1
Y
1
A
ASP
-42
A
ASP
12
1
Y
1
A
ASP
-41
A
ASP
13
1
Y
1
A
LYS
-40
A
LYS
14
1
Y
1
A
MET
-39
A
MET
15
1
Y
1
A
LEU
-38
A
LEU
16
1
Y
1
A
VAL
-37
A
VAL
17
1
Y
1
A
PRO
-36
A
PRO
18
1
Y
1
A
ARG
-35
A
ARG
19
1
Y
1
A
GLY
-34
A
GLY
20
1
Y
1
A
SER
-33
A
SER
21
1
Y
1
A
GLU
-32
A
GLU
22
1
Y
1
A
ASN
-31
A
ASN
23
1
Y
1
A
LEU
-30
A
LEU
24
1
Y
1
A
TYR
-29
A
TYR
25
1
Y
1
A
PHE
-28
A
PHE
26
1
Y
1
B
MET
-53
B
MET
1
1
Y
1
B
ALA
-52
B
ALA
2
1
Y
1
B
HIS
-51
B
HIS
3
1
Y
1
B
HIS
-50
B
HIS
4
1
Y
1
B
HIS
-49
B
HIS
5
1
Y
1
B
HIS
-48
B
HIS
6
1
Y
1
B
HIS
-47
B
HIS
7
1
Y
1
B
HIS
-46
B
HIS
8
1
Y
1
B
VAL
-45
B
VAL
9
1
Y
1
B
ASP
-44
B
ASP
10
1
Y
1
B
ASP
-43
B
ASP
11
1
Y
1
B
ASP
-42
B
ASP
12
1
Y
1
B
ASP
-41
B
ASP
13
1
Y
1
B
LYS
-40
B
LYS
14
1
Y
1
B
MET
-39
B
MET
15
1
Y
1
B
LEU
-38
B
LEU
16
1
Y
1
B
VAL
-37
B
VAL
17
1
Y
1
B
PRO
-36
B
PRO
18
1
Y
1
B
ARG
-35
B
ARG
19
1
Y
1
B
GLY
-34
B
GLY
20
1
Y
1
B
SER
-33
B
SER
21
1
Y
1
B
GLU
-32
B
GLU
22
1
Y
1
B
ASN
-31
B
ASN
23
1
Y
1
B
LEU
-30
B
LEU
24
1
Y
1
B
TYR
-29
B
TYR
25
1
Y
1
B
PHE
-28
B
PHE
26
1
Y
1
A
B
OD1
HH22
ASP
ARG
-22
239
1.51
1
A
A
PRO
GLU
244
245
144.61
1
A
A
HIS
CYS
247
248
143.21
1
A
ASN
-13
-33.53
117.66
1
A
VAL
-8
-48.05
156.89
1
A
ARG
-5
-100.02
76.51
1
A
HIS
228
91.23
-11.05
1
A
PRO
244
-55.89
87.95
1
A
HIS
247
29.65
45.58
1
A
CYS
248
-107.12
51.37
1
A
ILE
262
-150.49
-106.45
1
A
LEU
263
-3.33
72.81
1
A
VAL
287
-79.45
-70.25
1
A
ALA
288
-39.85
-35.56
1
A
THR
312
-35.96
-38.76
1
A
GLU
324
-114.64
70.87
1
A
TYR
345
-65.00
73.16
1
B
ASN
-13
-35.16
114.75
1
B
VAL
-8
-49.50
157.25
1
B
ARG
-5
-101.52
76.82
1
B
HIS
228
97.60
-31.47
1
B
SER
232
129.32
159.63
1
B
PRO
244
-56.13
90.17
1
B
THR
246
-38.55
123.60
1
B
HIS
247
-167.68
60.87
1
B
ILE
262
-157.83
-138.29
1
B
LEU
263
33.37
68.01
1
B
SER
278
-59.02
170.57
1
B
ALA
288
-35.08
-39.19
1
B
ASN
296
-69.92
11.96
1
B
THR
312
-36.08
-33.21
1
B
MET
331
-50.41
107.96
1
B
TYR
345
-67.20
77.78
1
B
ASP
348
76.76
-20.76
260.360
99.1996
20.000
0.2769
0.2363
0.2406
3.1000
43.490
1661
16511
10.0600
96.7400
1.000
1.000
0.6587
0.5400
Random
1
0.000
MOLECULAR REPLACEMENT
38.1100
0.9000
1.1100
ML
FLAT BULK SOLVENT MODEL
3.1000
43.490
0
3006
2
0
3004
0.011
3112
1.495
4247
0.084
428
0.008
549
18.693
1071
0.4751
0.4188
3.1913
134
1200
1334
12
95.0000
0.4148
0.3998
3.2943
138
1198
1336
12
97.0000
0.4704
0.3754
3.4120
137
1217
1354
12
97.0000
0.3834
0.3658
3.5486
140
1243
1383
12
97.0000
0.3496
0.3090
3.7100
137
1220
1357
12
98.0000
0.2968
0.2873
3.9055
137
1239
1376
12
98.0000
0.3535
0.2706
4.1500
136
1224
1360
12
97.0000
0.3249
0.2268
4.4701
139
1247
1386
12
97.0000
0.2587
0.2101
4.9194
135
1209
1344
12
95.0000
0.2697
0.2240
5.6299
139
1250
1389
12
96.0000
0.2721
0.2371
7.0881
141
1265
1406
12
96.0000
0.2008
0.1794
43.49
148
1338
1486
12
97.0000
3.000
43.490
4J4J
18499
0.100
0.910
1
7.200
9.600
19742
98.500
0.838
3.000
3.110
1.300
19991
1839
1.010
1
10.450
100.000
0.749
3.110
3.230
1.600
20029
1852
1.000
1
10.280
99.900
0.681
3.230
3.380
1.900
19856
1830
1.020
1
10.370
100.000
0.547
3.380
3.560
2.500
20021
1861
1.000
1
10.060
100.000
0.400
3.560
3.780
3.500
19809
1851
1.020
1
9.720
99.700
0.271
3.780
4.070
5.000
19744
1847
1.030
1
9.290
98.800
0.167
4.070
4.480
7.300
19503
1824
0.940
1
8.390
97.400
0.117
4.480
5.130
11.200
19413
1795
0.770
1
8.830
95.400
0.102
5.130
6.460
12.900
19660
1852
0.640
1
9.540
96.800
0.046
6.460
43.490
26.800
19386
1948
0.610
1
9.110
97.200
data scaling
Jim W. Pflugrath
Jim.Pflugrath@Rigaku.com
May 2 2011
http://www.rigaku.com/software/dtrek.html
d*TREK
package
9.9.9.1D
data reduction
Jim W. Pflugrath
Jim.Pflugrath@Rigaku.com
May 2 2011
http://www.rigaku.com/software/dtrek.html
d*TREK
package
9.9.9.1D
refinement
Paul D. Adams
PDAdams@lbl.gov
C++
http://www.phenix-online.org/
PHENIX
package
1.8_1069
data extraction
PDB
deposit@deposit.rcsb.org
April 22, 2011
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.11
data collection
Executor
(NE-CAT)
phasing
PHASER
Crystal structure of the APOBEC3F Vif binding domain
1
N
N
1
N
N
2
N
N
2
N
N
A
ASP
-22
A
ASP
32
HELX_P
A
ASN
-13
A
ASN
41
1
1
10
A
HIS
249
A
HIS
85
HELX_P
A
ILE
262
A
ILE
98
1
2
14
A
CYS
280
A
CYS
116
HELX_P
A
ARG
293
A
ARG
129
1
3
14
A
ASP
311
A
ASP
147
HELX_P
A
GLU
324
A
GLU
160
1
4
14
A
GLY
332
A
GLY
168
HELX_P
A
PHE
343
A
PHE
179
1
5
12
A
GLY
356
A
GLY
192
HELX_P
A
GLU
373
A
GLU
209
1
6
18
B
ASP
-22
B
ASP
32
HELX_P
B
ASN
-13
B
ASN
41
1
7
10
B
LYS
226
B
LYS
62
HELX_P
B
SER
229
B
SER
65
5
8
4
B
HIS
249
B
HIS
85
HELX_P
B
ILE
262
B
ILE
98
1
9
14
B
CYS
280
B
CYS
116
HELX_P
B
ARG
293
B
ARG
129
1
10
14
B
ASP
311
B
ASP
147
HELX_P
B
GLN
323
B
GLN
159
1
11
13
B
GLY
332
B
GLY
168
HELX_P
B
PHE
343
B
PHE
179
1
12
12
B
GLY
356
B
GLY
192
HELX_P
B
GLU
373
B
GLU
209
1
13
18
metalc
1.926
A
HIS
249
A
ND1
HIS
85
1_555
A
ZN
401
C
ZN
ZN
1_555
metalc
2.462
A
CYS
280
A
SG
CYS
116
1_555
A
ZN
401
C
ZN
ZN
1_555
metalc
2.435
A
CYS
283
A
SG
CYS
119
1_555
A
ZN
401
C
ZN
ZN
1_555
metalc
2.086
B
HIS
249
B
ND1
HIS
85
1_555
B
ZN
401
D
ZN
ZN
1_555
metalc
2.382
B
CYS
280
B
SG
CYS
116
1_555
B
ZN
401
D
ZN
ZN
1_555
metalc
2.297
B
CYS
283
B
SG
CYS
119
1_555
B
ZN
401
D
ZN
ZN
1_555
HYDROLASE
alpha/beta, HYDROLASE
B
THR
246
B
THR
82
1
B
HIS
247
B
HIS
83
-10.81
ABC3F_HUMAN
UNP
1
218
Q8IUX4
LCFTMEVVKHHSPVSWKRGVFRNQVDPETHCHAERCFLSWFCDDILSPNTNYEVTWYTSWSPCPECAGEVAEFLARHSNV
NLTIFTARLYYFWDTDYQEGLRSLSQEGASVEIMGYKDFKYCWENFVYNDDEPFKPWKGLKYNFLFLDSKLQEILE
218
373
4J4J
218
373
Q8IUX4
A
1
54
209
218
373
4J4J
218
373
Q8IUX4
B
1
54
209
1
expression tag
MET
-53
4J4J
A
Q8IUX4
UNP
1
1
expression tag
ALA
-52
4J4J
A
Q8IUX4
UNP
2
1
expression tag
HIS
-51
4J4J
A
Q8IUX4
UNP
3
1
expression tag
HIS
-50
4J4J
A
Q8IUX4
UNP
4
1
expression tag
HIS
-49
4J4J
A
Q8IUX4
UNP
5
1
expression tag
HIS
-48
4J4J
A
Q8IUX4
UNP
6
1
expression tag
HIS
-47
4J4J
A
Q8IUX4
UNP
7
1
expression tag
HIS
-46
4J4J
A
Q8IUX4
UNP
8
1
expression tag
VAL
-45
4J4J
A
Q8IUX4
UNP
9
1
expression tag
ASP
-44
4J4J
A
Q8IUX4
UNP
10
1
expression tag
ASP
-43
4J4J
A
Q8IUX4
UNP
11
1
expression tag
ASP
-42
4J4J
A
Q8IUX4
UNP
12
1
expression tag
ASP
-41
4J4J
A
Q8IUX4
UNP
13
1
expression tag
LYS
-40
4J4J
A
Q8IUX4
UNP
14
1
expression tag
MET
-39
4J4J
A
Q8IUX4
UNP
15
1
expression tag
LEU
-38
4J4J
A
Q8IUX4
UNP
16
1
expression tag
VAL
-37
4J4J
A
Q8IUX4
UNP
17
1
expression tag
PRO
-36
4J4J
A
Q8IUX4
UNP
18
1
expression tag
ARG
-35
4J4J
A
Q8IUX4
UNP
19
1
expression tag
GLY
-34
4J4J
A
Q8IUX4
UNP
20
1
expression tag
SER
-33
4J4J
A
Q8IUX4
UNP
21
1
expression tag
GLU
-32
4J4J
A
Q8IUX4
UNP
22
1
expression tag
ASN
-31
4J4J
A
Q8IUX4
UNP
23
1
expression tag
LEU
-30
4J4J
A
Q8IUX4
UNP
24
1
expression tag
TYR
-29
4J4J
A
Q8IUX4
UNP
25
1
expression tag
PHE
-28
4J4J
A
Q8IUX4
UNP
26
1
expression tag
GLN
-27
4J4J
A
Q8IUX4
UNP
27
1
expression tag
GLY
-26
4J4J
A
Q8IUX4
UNP
28
1
expression tag
SER
-25
4J4J
A
Q8IUX4
UNP
29
1
expression tag
ALA
-24
4J4J
A
Q8IUX4
UNP
30
1
expression tag
MET
-23
4J4J
A
Q8IUX4
UNP
31
1
expression tag
ASP
-22
4J4J
A
Q8IUX4
UNP
32
1
expression tag
PRO
-21
4J4J
A
Q8IUX4
UNP
33
1
expression tag
PRO
-20
4J4J
A
Q8IUX4
UNP
34
1
expression tag
THR
-19
4J4J
A
Q8IUX4
UNP
35
1
expression tag
PHE
-18
4J4J
A
Q8IUX4
UNP
36
1
expression tag
THR
-17
4J4J
A
Q8IUX4
UNP
37
1
expression tag
PHE
-16
4J4J
A
Q8IUX4
UNP
38
1
expression tag
ASN
-15
4J4J
A
Q8IUX4
UNP
39
1
expression tag
PHE
-14
4J4J
A
Q8IUX4
UNP
40
1
expression tag
ASN
-13
4J4J
A
Q8IUX4
UNP
41
1
expression tag
ASN
-12
4J4J
A
Q8IUX4
UNP
42
1
expression tag
GLU
-11
4J4J
A
Q8IUX4
UNP
43
1
expression tag
PRO
-10
4J4J
A
Q8IUX4
UNP
44
1
expression tag
TRP
-9
4J4J
A
Q8IUX4
UNP
45
1
expression tag
VAL
-8
4J4J
A
Q8IUX4
UNP
46
1
expression tag
ARG
-7
4J4J
A
Q8IUX4
UNP
47
1
expression tag
GLY
-6
4J4J
A
Q8IUX4
UNP
48
1
expression tag
ARG
-5
4J4J
A
Q8IUX4
UNP
49
1
expression tag
HIS
-4
4J4J
A
Q8IUX4
UNP
50
1
expression tag
GLU
-3
4J4J
A
Q8IUX4
UNP
51
1
expression tag
THR
-2
4J4J
A
Q8IUX4
UNP
52
1
expression tag
TYR
-1
4J4J
A
Q8IUX4
UNP
53
2
expression tag
MET
-53
4J4J
B
Q8IUX4
UNP
1
2
expression tag
ALA
-52
4J4J
B
Q8IUX4
UNP
2
2
expression tag
HIS
-51
4J4J
B
Q8IUX4
UNP
3
2
expression tag
HIS
-50
4J4J
B
Q8IUX4
UNP
4
2
expression tag
HIS
-49
4J4J
B
Q8IUX4
UNP
5
2
expression tag
HIS
-48
4J4J
B
Q8IUX4
UNP
6
2
expression tag
HIS
-47
4J4J
B
Q8IUX4
UNP
7
2
expression tag
HIS
-46
4J4J
B
Q8IUX4
UNP
8
2
expression tag
VAL
-45
4J4J
B
Q8IUX4
UNP
9
2
expression tag
ASP
-44
4J4J
B
Q8IUX4
UNP
10
2
expression tag
ASP
-43
4J4J
B
Q8IUX4
UNP
11
2
expression tag
ASP
-42
4J4J
B
Q8IUX4
UNP
12
2
expression tag
ASP
-41
4J4J
B
Q8IUX4
UNP
13
2
expression tag
LYS
-40
4J4J
B
Q8IUX4
UNP
14
2
expression tag
MET
-39
4J4J
B
Q8IUX4
UNP
15
2
expression tag
LEU
-38
4J4J
B
Q8IUX4
UNP
16
2
expression tag
VAL
-37
4J4J
B
Q8IUX4
UNP
17
2
expression tag
PRO
-36
4J4J
B
Q8IUX4
UNP
18
2
expression tag
ARG
-35
4J4J
B
Q8IUX4
UNP
19
2
expression tag
GLY
-34
4J4J
B
Q8IUX4
UNP
20
2
expression tag
SER
-33
4J4J
B
Q8IUX4
UNP
21
2
expression tag
GLU
-32
4J4J
B
Q8IUX4
UNP
22
2
expression tag
ASN
-31
4J4J
B
Q8IUX4
UNP
23
2
expression tag
LEU
-30
4J4J
B
Q8IUX4
UNP
24
2
expression tag
TYR
-29
4J4J
B
Q8IUX4
UNP
25
2
expression tag
PHE
-28
4J4J
B
Q8IUX4
UNP
26
2
expression tag
GLN
-27
4J4J
B
Q8IUX4
UNP
27
2
expression tag
GLY
-26
4J4J
B
Q8IUX4
UNP
28
2
expression tag
SER
-25
4J4J
B
Q8IUX4
UNP
29
2
expression tag
ALA
-24
4J4J
B
Q8IUX4
UNP
30
2
expression tag
MET
-23
4J4J
B
Q8IUX4
UNP
31
2
expression tag
ASP
-22
4J4J
B
Q8IUX4
UNP
32
2
expression tag
PRO
-21
4J4J
B
Q8IUX4
UNP
33
2
expression tag
PRO
-20
4J4J
B
Q8IUX4
UNP
34
2
expression tag
THR
-19
4J4J
B
Q8IUX4
UNP
35
2
expression tag
PHE
-18
4J4J
B
Q8IUX4
UNP
36
2
expression tag
THR
-17
4J4J
B
Q8IUX4
UNP
37
2
expression tag
PHE
-16
4J4J
B
Q8IUX4
UNP
38
2
expression tag
ASN
-15
4J4J
B
Q8IUX4
UNP
39
2
expression tag
PHE
-14
4J4J
B
Q8IUX4
UNP
40
2
expression tag
ASN
-13
4J4J
B
Q8IUX4
UNP
41
2
expression tag
ASN
-12
4J4J
B
Q8IUX4
UNP
42
2
expression tag
GLU
-11
4J4J
B
Q8IUX4
UNP
43
2
expression tag
PRO
-10
4J4J
B
Q8IUX4
UNP
44
2
expression tag
TRP
-9
4J4J
B
Q8IUX4
UNP
45
2
expression tag
VAL
-8
4J4J
B
Q8IUX4
UNP
46
2
expression tag
ARG
-7
4J4J
B
Q8IUX4
UNP
47
2
expression tag
GLY
-6
4J4J
B
Q8IUX4
UNP
48
2
expression tag
ARG
-5
4J4J
B
Q8IUX4
UNP
49
2
expression tag
HIS
-4
4J4J
B
Q8IUX4
UNP
50
2
expression tag
GLU
-3
4J4J
B
Q8IUX4
UNP
51
2
expression tag
THR
-2
4J4J
B
Q8IUX4
UNP
52
2
expression tag
TYR
-1
4J4J
B
Q8IUX4
UNP
53
5
5
anti-parallel
anti-parallel
parallel
parallel
anti-parallel
anti-parallel
parallel
parallel
A
SER
229
A
SER
65
A
GLN
241
A
GLN
77
A
GLU
-3
A
GLU
51
A
LYS
226
A
LYS
62
A
ASN
268
A
ASN
104
A
THR
275
A
THR
111
A
VAL
297
A
VAL
133
A
THR
303
A
THR
139
A
ALA
326
A
ALA
162
A
ILE
330
A
ILE
166
B
TRP
233
B
TRP
69
B
GLN
241
B
GLN
77
B
GLU
-3
B
GLU
51
B
VAL
224
B
VAL
60
B
TYR
269
B
TYR
105
B
TRP
277
B
TRP
113
B
VAL
297
B
VAL
133
B
ARG
305
B
ARG
141
B
ALA
326
B
ALA
162
B
GLU
329
B
GLU
165
BINDING SITE FOR RESIDUE ZN A 401
A
ZN
401
Software
3
BINDING SITE FOR RESIDUE ZN B 401
B
ZN
401
Software
4
A
HIS
249
A
HIS
85
3
1_555
A
CYS
280
A
CYS
116
3
1_555
A
CYS
283
A
CYS
119
3
1_555
B
HIS
249
B
HIS
85
4
1_555
B
GLU
251
B
GLU
87
4
1_555
B
CYS
280
B
CYS
116
4
1_555
B
CYS
283
B
CYS
119
4
1_555
97
I 4 2 2