0.017516 0.000000 0.000000 0.000000 0.017516 0.000000 0.000000 0.000000 0.011355 0.00000 0.00000 0.00000 Gelin, M. Colliandre, L. Bessin, Y. Guichou, J.F. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 57.090 57.090 88.070 C22 H28 N4 O4 412.482 1-(4-aminobenzyl)-3-{2-[(2R)-2-(2,5-dimethoxyphenyl)pyrrolidin-1-yl]-2-oxoethyl}urea non-polymer C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C2 H6 O S 78.133 DIMETHYL SULFOXIDE non-polymer C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N C N 2 N O Y 3 N C Y 4 N C Y 5 N C Y 6 N C N 7 N O N 8 N C Y 9 N C Y 10 N C N 11 R C N 12 N C N 13 N C N 14 N C N 15 N N N 16 N C N 17 N O N 18 N C N 19 N N N 20 N C N 21 N O N 22 N N N 23 N C Y 24 N C Y 25 N C Y 26 N C Y 27 N C N 28 N N Y 29 N C Y 30 N C N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N H N 42 N H N 43 N H N 44 N H N 45 N H N 46 N H N 47 N H N 48 N H N 49 N H N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N H N 59 N N N 60 S C N 61 N C N 62 N O N 63 N C N 64 N O N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N N N 73 S C N 74 N C N 75 N O N 76 N C N 77 N C N 78 N C N 79 N N N 80 N C N 81 N N N 82 N N N 83 N O N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N H N 95 N H N 96 N H N 97 N H N 98 N H N 99 N N N 100 S C N 101 N C N 102 N O N 103 N C N 104 N C N 105 N O N 106 N N N 107 N O N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N H N 114 N H N 115 N H N 116 N N N 117 S C N 118 N C N 119 N O N 120 N C N 121 N C N 122 N O N 123 N O N 124 N O N 125 N H N 126 N H N 127 N H N 128 N H N 129 N H N 130 N H N 131 N H N 132 N N N 133 R C N 134 N C N 135 N O N 136 N C N 137 N S N 138 N O N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N H N 145 N H N 146 N S N 147 N O N 148 N C N 149 N C N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N N N 157 S C N 158 N C N 159 N O N 160 N C N 161 N C N 162 N C N 163 N O N 164 N N N 165 N O N 166 N H N 167 N H N 168 N H N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N N N 177 S C N 178 N C N 179 N O N 180 N C N 181 N C N 182 N C N 183 N O N 184 N O N 185 N O N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N N N 196 N C N 197 N C N 198 N O N 199 N O N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N N N 206 S C N 207 N C N 208 N O N 209 N C Y 210 N C Y 211 N N Y 212 N C Y 213 N C Y 214 N N N 215 N O N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N O N 227 N H N 228 N H N 229 N N N 230 S C N 231 N C N 232 N O N 233 S C N 234 N C N 235 N C N 236 N C N 237 N O N 238 N H N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N N N 252 S C N 253 N C N 254 N O N 255 N C N 256 N C N 257 N C N 258 N C N 259 N O N 260 N H N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N N N 274 S C N 275 N C N 276 N O N 277 N C N 278 N C N 279 N C N 280 N C N 281 N N N 282 N O N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N H N 292 N H N 293 N H N 294 N H N 295 N H N 296 N H N 297 N H N 298 N N N 299 S C N 300 N C N 301 N O N 302 N C N 303 N C N 304 N S N 305 N C N 306 N O N 307 N H N 308 N H N 309 N H N 310 N H N 311 N H N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N N N 319 S C N 320 N C N 321 N O N 322 N C Y 323 N C Y 324 N C Y 325 N C Y 326 N C Y 327 N C Y 328 N C N 329 N O N 330 N H N 331 N H N 332 N H N 333 N H N 334 N H N 335 N H N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N N N 342 S C N 343 N C N 344 N O N 345 N C N 346 N C N 347 N C N 348 N O N 349 N H N 350 N H N 351 N H N 352 N H N 353 N H N 354 N H N 355 N H N 356 N H N 357 N H N 358 N N N 359 S C N 360 N C N 361 N O N 362 N C N 363 N O N 364 N O N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N N N 373 S C N 374 N C N 375 N O N 376 R C N 377 N O N 378 N C N 379 N O N 380 N H N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N N N 390 S C N 391 N C N 392 N O N 393 N C Y 394 N C Y 395 N C Y 396 N C Y 397 N N Y 398 N C Y 399 N C Y 400 N C Y 401 N C Y 402 N C N 403 N O N 404 N H N 405 N H N 406 N H N 407 N H N 408 N H N 409 N H N 410 N H N 411 N H N 412 N H N 413 N H N 414 N H N 415 N H N 416 N N N 417 S C N 418 N C N 419 N O N 420 N C Y 421 N C Y 422 N C Y 423 N C Y 424 N C Y 425 N C Y 426 N C N 427 N O N 428 N O N 429 N H N 430 N H N 431 N H N 432 N H N 433 N H N 434 N H N 435 N H N 436 N H N 437 N H N 438 N H N 439 N H N 440 N N N 441 S C N 442 N C N 443 N O N 444 N C N 445 N C N 446 N C N 447 N O N 448 N H N 449 N H N 450 N H N 451 N H N 452 N H N 453 N H N 454 N H N 455 N H N 456 N H N 457 N H N 458 N H N 1 N sing N 2 N sing Y 3 N doub Y 4 N sing Y 5 N sing Y 6 N doub N 7 N sing Y 8 N doub N 9 N sing N 10 N sing Y 11 N sing N 12 N sing N 13 N sing N 14 N doub N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N doub Y 26 N doub Y 27 N sing Y 28 N sing Y 29 N doub Y 30 N doub Y 31 N sing N 32 N sing N 33 N sing N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N sing N 67 N doub N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N doub N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N doub N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N doub N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N doub N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N doub N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N doub N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N doub N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N doub N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N doub N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N doub N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N doub N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N doub N 205 N sing N 206 N sing N 207 N sing N 208 N sing Y 209 N sing Y 210 N doub Y 211 N doub N 212 N sing Y 213 N sing N 214 N sing Y 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N doub N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N doub N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N doub N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N doub N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N doub N 313 N sing N 314 N sing N 315 N sing N 316 N sing Y 317 N doub Y 318 N sing Y 319 N sing N 320 N sing Y 321 N doub N 322 N sing Y 323 N doub N 324 N sing Y 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N doub N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N doub N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N doub N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N doub N 382 N sing N 383 N sing N 384 N sing N 385 N sing Y 386 N doub Y 387 N sing Y 388 N sing N 389 N sing Y 390 N doub Y 391 N sing Y 392 N sing N 393 N sing Y 394 N sing Y 395 N doub N 396 N sing Y 397 N doub N 398 N sing Y 399 N sing N 400 N sing N 401 N sing N 402 N sing N 403 N sing N 404 N sing N 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N doub N 410 N sing N 411 N sing N 412 N sing N 413 N sing Y 414 N doub Y 415 N sing Y 416 N sing N 417 N sing Y 418 N doub N 419 N sing Y 420 N doub N 421 N sing Y 422 N sing N 423 N sing N 424 N sing N 425 N sing N 426 N sing N 427 N sing N 428 N sing N 429 N sing N 430 N sing N 431 N sing N 432 N sing N 433 N doub N 434 N sing N 435 N sing N 436 N sing N 437 N sing N 438 N sing N 439 N sing N 440 N sing N 441 N sing N 442 N sing N 443 N sing N 444 N sing to be published 0353 Rationnal Design of small-molecule inhibitors of human Cyclophilins and HCV replication. 10.2210/pdb4j5a/pdb pdb_00004j5a 100 1 CCD 2010-04-10 ADSC QUANTUM 315r Asymmetric Laue 001 SINGLE WAVELENGTH M x-ray 1 0.97950 1.0 ID14-4 ESRF 0.97950 SYNCHROTRON ESRF BEAMLINE ID14-4 17652.125 Peptidyl-prolyl cis-trans isomerase F, mitochondrial 5.2.1.8 UNP residues 44-207 K175I 1 man polymer 412.482 1-(4-aminobenzyl)-3-{2-[(2R)-2-(2,5-dimethoxyphenyl)pyrrolidin-1-yl]-2-oxoethyl}urea 1 syn non-polymer 78.133 DIMETHYL SULFOXIDE 1 syn non-polymer 18.015 water 236 nat water PPIase F, Cyclophilin F, Rotamase F no no GNPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGKSIYGS RFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEGMDVVKKIESFGSKSGRTSKKIVITDC GQLS GNPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGKSIYGS RFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEGMDVVKKIESFGSKSGRTSKKIVITDC GQLS X polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human sample CYP3, PPIF 9606 Homo sapiens 562 Escherichia coli 1 2.03 39.49 VAPOR DIFFUSION, HANGING DROP 7.3 30% PEG4000, pH 7.3, vapor diffusion, hanging drop, temperature 291.0K 291.0 chem_comp_atom chem_comp_bond database_2 struct_ref_seq_dif struct_site repository Initial release Data collection Database references Derived calculations 1 0 2014-02-19 1 1 2024-02-28 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id RCSB Y RCSB 2013-02-08 REL REL 67Z 1-(4-aminobenzyl)-3-{2-[(2R)-2-(2,5-dimethoxyphenyl)pyrrolidin-1-yl]-2-oxoethyl}urea DMS DIMETHYL SULFOXIDE HOH water 67Z 1 2 67Z 67Z 301 X DMS 2 3 DMS DMS 302 X HOH 1 4 HOH HOH 401 X HOH 2 4 HOH HOH 402 X HOH 3 4 HOH HOH 403 X HOH 5 4 HOH HOH 404 X HOH 6 4 HOH HOH 405 X HOH 7 4 HOH HOH 406 X HOH 8 4 HOH HOH 407 X HOH 11 4 HOH HOH 408 X HOH 12 4 HOH HOH 409 X HOH 13 4 HOH HOH 410 X HOH 16 4 HOH HOH 411 X HOH 17 4 HOH HOH 412 X HOH 18 4 HOH HOH 413 X HOH 19 4 HOH HOH 414 X HOH 20 4 HOH HOH 415 X HOH 22 4 HOH HOH 416 X HOH 23 4 HOH HOH 417 X HOH 24 4 HOH HOH 418 X HOH 27 4 HOH HOH 419 X HOH 28 4 HOH HOH 420 X HOH 29 4 HOH HOH 421 X HOH 30 4 HOH HOH 422 X HOH 31 4 HOH HOH 423 X HOH 32 4 HOH HOH 424 X HOH 34 4 HOH HOH 425 X HOH 35 4 HOH HOH 426 X HOH 36 4 HOH HOH 427 X HOH 37 4 HOH HOH 428 X HOH 38 4 HOH HOH 429 X HOH 39 4 HOH HOH 430 X HOH 40 4 HOH HOH 431 X HOH 41 4 HOH HOH 432 X HOH 42 4 HOH HOH 433 X HOH 43 4 HOH HOH 434 X HOH 44 4 HOH HOH 435 X HOH 45 4 HOH HOH 436 X HOH 46 4 HOH HOH 437 X HOH 47 4 HOH HOH 438 X HOH 48 4 HOH HOH 439 X HOH 49 4 HOH HOH 440 X HOH 50 4 HOH HOH 441 X HOH 51 4 HOH HOH 442 X HOH 52 4 HOH HOH 443 X HOH 53 4 HOH HOH 444 X HOH 54 4 HOH HOH 445 X HOH 55 4 HOH HOH 446 X HOH 56 4 HOH HOH 447 X HOH 57 4 HOH HOH 448 X HOH 58 4 HOH HOH 449 X HOH 59 4 HOH HOH 450 X HOH 60 4 HOH HOH 451 X HOH 61 4 HOH HOH 452 X HOH 62 4 HOH HOH 453 X HOH 63 4 HOH HOH 454 X HOH 64 4 HOH HOH 455 X HOH 65 4 HOH HOH 456 X HOH 66 4 HOH HOH 457 X HOH 67 4 HOH HOH 458 X HOH 69 4 HOH HOH 459 X HOH 70 4 HOH HOH 460 X HOH 71 4 HOH HOH 461 X HOH 72 4 HOH HOH 462 X HOH 73 4 HOH HOH 463 X HOH 74 4 HOH HOH 464 X HOH 75 4 HOH HOH 465 X HOH 76 4 HOH HOH 466 X HOH 77 4 HOH HOH 467 X HOH 78 4 HOH HOH 468 X HOH 79 4 HOH HOH 469 X HOH 80 4 HOH HOH 470 X HOH 81 4 HOH HOH 471 X HOH 83 4 HOH HOH 472 X HOH 84 4 HOH HOH 473 X HOH 85 4 HOH HOH 474 X HOH 86 4 HOH HOH 475 X HOH 87 4 HOH HOH 476 X HOH 89 4 HOH HOH 477 X HOH 91 4 HOH HOH 478 X HOH 92 4 HOH HOH 479 X HOH 94 4 HOH HOH 480 X HOH 95 4 HOH HOH 481 X HOH 96 4 HOH HOH 482 X HOH 97 4 HOH HOH 483 X HOH 98 4 HOH HOH 484 X HOH 99 4 HOH HOH 485 X HOH 101 4 HOH HOH 486 X HOH 102 4 HOH HOH 487 X HOH 103 4 HOH HOH 488 X HOH 105 4 HOH HOH 489 X HOH 106 4 HOH HOH 490 X HOH 107 4 HOH HOH 491 X HOH 108 4 HOH HOH 492 X HOH 109 4 HOH HOH 493 X HOH 110 4 HOH HOH 494 X HOH 111 4 HOH HOH 495 X HOH 112 4 HOH HOH 496 X HOH 113 4 HOH HOH 497 X HOH 114 4 HOH HOH 498 X HOH 115 4 HOH HOH 499 X HOH 116 4 HOH HOH 500 X HOH 117 4 HOH HOH 501 X HOH 118 4 HOH HOH 502 X HOH 119 4 HOH HOH 503 X HOH 120 4 HOH HOH 504 X HOH 121 4 HOH HOH 505 X HOH 122 4 HOH HOH 506 X HOH 123 4 HOH HOH 507 X HOH 124 4 HOH HOH 508 X HOH 125 4 HOH HOH 509 X HOH 126 4 HOH HOH 510 X HOH 127 4 HOH HOH 511 X HOH 128 4 HOH HOH 512 X HOH 129 4 HOH HOH 513 X HOH 130 4 HOH HOH 514 X HOH 131 4 HOH HOH 515 X HOH 132 4 HOH HOH 516 X HOH 133 4 HOH HOH 517 X HOH 134 4 HOH HOH 518 X HOH 136 4 HOH HOH 519 X HOH 137 4 HOH HOH 520 X HOH 139 4 HOH HOH 521 X HOH 140 4 HOH HOH 522 X HOH 141 4 HOH HOH 523 X HOH 142 4 HOH HOH 524 X HOH 143 4 HOH HOH 525 X HOH 144 4 HOH HOH 526 X HOH 145 4 HOH HOH 527 X HOH 146 4 HOH HOH 528 X HOH 147 4 HOH HOH 529 X HOH 148 4 HOH HOH 530 X HOH 149 4 HOH HOH 531 X HOH 150 4 HOH HOH 532 X HOH 151 4 HOH HOH 533 X HOH 152 4 HOH HOH 534 X HOH 153 4 HOH HOH 535 X HOH 154 4 HOH HOH 536 X HOH 155 4 HOH HOH 537 X HOH 157 4 HOH HOH 538 X HOH 158 4 HOH HOH 539 X HOH 159 4 HOH HOH 540 X HOH 160 4 HOH HOH 541 X HOH 162 4 HOH HOH 542 X HOH 163 4 HOH HOH 543 X HOH 164 4 HOH HOH 544 X HOH 165 4 HOH HOH 545 X HOH 166 4 HOH HOH 546 X HOH 167 4 HOH HOH 547 X HOH 168 4 HOH HOH 548 X HOH 169 4 HOH HOH 549 X HOH 170 4 HOH HOH 550 X HOH 171 4 HOH HOH 551 X HOH 172 4 HOH HOH 552 X HOH 174 4 HOH HOH 553 X HOH 176 4 HOH HOH 554 X HOH 178 4 HOH HOH 555 X HOH 179 4 HOH HOH 556 X HOH 180 4 HOH HOH 557 X HOH 185 4 HOH HOH 558 X HOH 186 4 HOH HOH 559 X HOH 187 4 HOH HOH 560 X HOH 188 4 HOH HOH 561 X HOH 189 4 HOH HOH 562 X HOH 191 4 HOH HOH 563 X HOH 192 4 HOH HOH 564 X HOH 193 4 HOH HOH 565 X HOH 194 4 HOH HOH 566 X HOH 195 4 HOH HOH 567 X HOH 196 4 HOH HOH 568 X HOH 197 4 HOH HOH 569 X HOH 198 4 HOH HOH 570 X HOH 199 4 HOH HOH 571 X HOH 201 4 HOH HOH 572 X HOH 202 4 HOH HOH 573 X HOH 203 4 HOH HOH 574 X HOH 204 4 HOH HOH 575 X HOH 205 4 HOH HOH 576 X HOH 206 4 HOH HOH 577 X HOH 207 4 HOH HOH 578 X HOH 208 4 HOH HOH 579 X HOH 210 4 HOH HOH 580 X HOH 212 4 HOH HOH 581 X HOH 216 4 HOH HOH 582 X HOH 218 4 HOH HOH 583 X HOH 220 4 HOH HOH 584 X HOH 227 4 HOH HOH 585 X HOH 229 4 HOH HOH 586 X HOH 231 4 HOH HOH 587 X HOH 233 4 HOH HOH 588 X HOH 236 4 HOH HOH 589 X HOH 237 4 HOH HOH 590 X HOH 238 4 HOH HOH 591 X HOH 240 4 HOH HOH 592 X HOH 241 4 HOH HOH 593 X HOH 242 4 HOH HOH 594 X HOH 243 4 HOH HOH 595 X HOH 244 4 HOH HOH 596 X HOH 245 4 HOH HOH 597 X HOH 246 4 HOH HOH 598 X HOH 248 4 HOH HOH 599 X HOH 249 4 HOH HOH 600 X HOH 250 4 HOH HOH 601 X HOH 251 4 HOH HOH 602 X HOH 253 4 HOH HOH 603 X HOH 255 4 HOH HOH 604 X HOH 256 4 HOH HOH 605 X HOH 257 4 HOH HOH 606 X HOH 258 4 HOH HOH 607 X HOH 259 4 HOH HOH 608 X HOH 260 4 HOH HOH 609 X HOH 261 4 HOH HOH 610 X HOH 262 4 HOH HOH 611 X HOH 263 4 HOH HOH 612 X HOH 264 4 HOH HOH 613 X HOH 265 4 HOH HOH 614 X HOH 266 4 HOH HOH 615 X HOH 267 4 HOH HOH 616 X HOH 268 4 HOH HOH 617 X HOH 269 4 HOH HOH 618 X HOH 270 4 HOH HOH 619 X HOH 271 4 HOH HOH 620 X HOH 272 4 HOH HOH 621 X HOH 273 4 HOH HOH 622 X HOH 274 4 HOH HOH 623 X HOH 275 4 HOH HOH 624 X HOH 276 4 HOH HOH 625 X HOH 277 4 HOH HOH 626 X HOH 278 4 HOH HOH 627 X HOH 279 4 HOH HOH 628 X HOH 280 4 HOH HOH 629 X HOH 281 4 HOH HOH 630 X HOH 282 4 HOH HOH 631 X HOH 283 4 HOH HOH 632 X HOH 284 4 HOH HOH 633 X HOH 285 4 HOH HOH 634 X HOH 286 4 HOH HOH 635 X HOH 287 4 HOH HOH 636 X GLY 44 n 1 GLY 44 X ASN 45 n 2 ASN 45 X PRO 46 n 3 PRO 46 X LEU 47 n 4 LEU 47 X VAL 48 n 5 VAL 48 X TYR 49 n 6 TYR 49 X LEU 50 n 7 LEU 50 X ASP 51 n 8 ASP 51 X VAL 52 n 9 VAL 52 X ASP 53 n 10 ASP 53 X ALA 54 n 11 ALA 54 X ASN 55 n 12 ASN 55 X GLY 56 n 13 GLY 56 X LYS 57 n 14 LYS 57 X PRO 58 n 15 PRO 58 X LEU 59 n 16 LEU 59 X GLY 60 n 17 GLY 60 X ARG 61 n 18 ARG 61 X VAL 62 n 19 VAL 62 X VAL 63 n 20 VAL 63 X LEU 64 n 21 LEU 64 X GLU 65 n 22 GLU 65 X LEU 66 n 23 LEU 66 X LYS 67 n 24 LYS 67 X ALA 68 n 25 ALA 68 X ASP 69 n 26 ASP 69 X VAL 70 n 27 VAL 70 X VAL 71 n 28 VAL 71 X PRO 72 n 29 PRO 72 X LYS 73 n 30 LYS 73 X THR 74 n 31 THR 74 X ALA 75 n 32 ALA 75 X GLU 76 n 33 GLU 76 X ASN 77 n 34 ASN 77 X PHE 78 n 35 PHE 78 X ARG 79 n 36 ARG 79 X ALA 80 n 37 ALA 80 X LEU 81 n 38 LEU 81 X CYS 82 n 39 CYS 82 X THR 83 n 40 THR 83 X GLY 84 n 41 GLY 84 X GLU 85 n 42 GLU 85 X LYS 86 n 43 LYS 86 X GLY 87 n 44 GLY 87 X PHE 88 n 45 PHE 88 X GLY 89 n 46 GLY 89 X TYR 90 n 47 TYR 90 X LYS 91 n 48 LYS 91 X GLY 92 n 49 GLY 92 X SER 93 n 50 SER 93 X THR 94 n 51 THR 94 X PHE 95 n 52 PHE 95 X HIS 96 n 53 HIS 96 X ARG 97 n 54 ARG 97 X VAL 98 n 55 VAL 98 X ILE 99 n 56 ILE 99 X PRO 100 n 57 PRO 100 X SER 101 n 58 SER 101 X PHE 102 n 59 PHE 102 X MET 103 n 60 MET 103 X CYS 104 n 61 CYS 104 X GLN 105 n 62 GLN 105 X ALA 106 n 63 ALA 106 X GLY 107 n 64 GLY 107 X ASP 108 n 65 ASP 108 X PHE 109 n 66 PHE 109 X THR 110 n 67 THR 110 X ASN 111 n 68 ASN 111 X HIS 112 n 69 HIS 112 X ASN 113 n 70 ASN 113 X GLY 114 n 71 GLY 114 X THR 115 n 72 THR 115 X GLY 116 n 73 GLY 116 X GLY 117 n 74 GLY 117 X LYS 118 n 75 LYS 118 X SER 119 n 76 SER 119 X ILE 120 n 77 ILE 120 X TYR 121 n 78 TYR 121 X GLY 122 n 79 GLY 122 X SER 123 n 80 SER 123 X ARG 124 n 81 ARG 124 X PHE 125 n 82 PHE 125 X PRO 126 n 83 PRO 126 X ASP 127 n 84 ASP 127 X GLU 128 n 85 GLU 128 X ASN 129 n 86 ASN 129 X PHE 130 n 87 PHE 130 X THR 131 n 88 THR 131 X LEU 132 n 89 LEU 132 X LYS 133 n 90 LYS 133 X HIS 134 n 91 HIS 134 X VAL 135 n 92 VAL 135 X GLY 136 n 93 GLY 136 X PRO 137 n 94 PRO 137 X GLY 138 n 95 GLY 138 X VAL 139 n 96 VAL 139 X LEU 140 n 97 LEU 140 X SER 141 n 98 SER 141 X MET 142 n 99 MET 142 X ALA 143 n 100 ALA 143 X ASN 144 n 101 ASN 144 X ALA 145 n 102 ALA 145 X GLY 146 n 103 GLY 146 X PRO 147 n 104 PRO 147 X ASN 148 n 105 ASN 148 X THR 149 n 106 THR 149 X ASN 150 n 107 ASN 150 X GLY 151 n 108 GLY 151 X SER 152 n 109 SER 152 X GLN 153 n 110 GLN 153 X PHE 154 n 111 PHE 154 X PHE 155 n 112 PHE 155 X ILE 156 n 113 ILE 156 X CYS 157 n 114 CYS 157 X THR 158 n 115 THR 158 X ILE 159 n 116 ILE 159 X LYS 160 n 117 LYS 160 X THR 161 n 118 THR 161 X ASP 162 n 119 ASP 162 X TRP 163 n 120 TRP 163 X LEU 164 n 121 LEU 164 X ASP 165 n 122 ASP 165 X GLY 166 n 123 GLY 166 X LYS 167 n 124 LYS 167 X HIS 168 n 125 HIS 168 X VAL 169 n 126 VAL 169 X VAL 170 n 127 VAL 170 X PHE 171 n 128 PHE 171 X GLY 172 n 129 GLY 172 X HIS 173 n 130 HIS 173 X VAL 174 n 131 VAL 174 X ILE 175 n 132 ILE 175 X GLU 176 n 133 GLU 176 X GLY 177 n 134 GLY 177 X MET 178 n 135 MET 178 X ASP 179 n 136 ASP 179 X VAL 180 n 137 VAL 180 X VAL 181 n 138 VAL 181 X LYS 182 n 139 LYS 182 X LYS 183 n 140 LYS 183 X ILE 184 n 141 ILE 184 X GLU 185 n 142 GLU 185 X SER 186 n 143 SER 186 X PHE 187 n 144 PHE 187 X GLY 188 n 145 GLY 188 X SER 189 n 146 SER 189 X LYS 190 n 147 LYS 190 X SER 191 n 148 SER 191 X GLY 192 n 149 GLY 192 X ARG 193 n 150 ARG 193 X THR 194 n 151 THR 194 X SER 195 n 152 SER 195 X LYS 196 n 153 LYS 196 X LYS 197 n 154 LYS 197 X ILE 198 n 155 ILE 198 X VAL 199 n 156 VAL 199 X ILE 200 n 157 ILE 200 X THR 201 n 158 THR 201 X ASP 202 n 159 ASP 202 X CYS 203 n 160 CYS 203 X GLY 204 n 161 GLY 204 X GLN 205 n 162 GLN 205 X LEU 206 n 163 LEU 206 X SER 207 n 164 SER 207 X author_and_software_defined_assembly PISA 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 X N ARG 97 A N ARG 54 X O GLN 105 A O GLN 62 X N ALA 106 A N ALA 63 X O PHE 154 A O PHE 111 X O PHE 155 A O PHE 112 X N SER 141 A N SER 98 X N LEU 140 A N LEU 97 X O GLY 172 A O GLY 129 X O ILE 175 A O ILE 132 X N VAL 63 A N VAL 20 X O LEU 59 A O LEU 16 X N VAL 52 A N VAL 9 X N ASP 51 A N ASP 8 X O ASP 202 A O ASP 159 1 X HOH 595 D HOH 1 X X OD1 O ASP HOH 202 458 2.06 B 1 X X OD2 O ASP HOH 53 566 2.09 B 1 X PHE 102 -144.64 -82.35 1 X ASN 113 -157.98 2.16 1 X THR 161 -112.37 66.08 1 X PHE 171 -140.81 10.08 13.0722 0.1904 0.1416 0.1440 1.580 36.697 1025 20616 5.01 98.17 1.000 0.230 0.17 1 1.15 Isomorphous Replacement 17.97 0.90 1.11 ML FLAT BULK SOLVENT MODEL 1.580 36.697 236 1510 34 0 1240 0.005 1346 1.150 1821 11.330 504 0.070 195 0.005 236 0.2783 0.2403 1.6228 153 2650 96.00 0.2639 0.2127 1.6706 127 2720 97.00 0.2674 0.2012 1.7245 152 2705 97.00 0.2233 0.1798 1.7861 159 2694 98.00 0.2615 0.1567 1.8576 145 2720 98.00 0.1890 0.1430 1.9422 134 2743 98.00 0.2332 0.1262 2.0446 165 2735 99.00 0.1719 0.1179 2.1726 149 2750 99.00 0.1821 0.1148 2.3404 130 2774 99.00 0.1696 0.1351 2.5758 123 2804 99.00 0.1898 0.1384 2.9484 160 2715 99.00 0.1515 0.1242 3.7141 137 2731 98.00 0.1459 0.1333 36.7071 140 2789 99.00 12.9 1.580 36.697 4J5A 20616 20616 0 0 0.067 0.067 1 11.200 6.600 99.800 0.508 1.580 1.670 1.500 0.508 1 6.500 99.000 0.340 1.670 1.770 2.300 0.340 1 6.600 99.700 0.198 1.770 1.890 3.900 0.198 1 6.600 99.800 0.115 1.890 2.040 6.600 0.115 1 6.600 99.900 0.075 2.040 2.230 9.500 0.075 1 6.500 100.000 0.059 2.230 2.500 12.000 0.059 1 6.700 100.000 0.049 2.500 2.880 13.200 0.049 1 6.700 100.000 0.037 2.880 3.530 15.800 0.037 1 6.100 100.000 0.028 3.530 5.000 21.100 0.028 1 6.600 100.000 0.025 5.000 36.697 20.000 0.025 1 7.000 99.800 data reduction Andrew G.W. Leslie andrew@mrc-lmb.cam.ac.uk http://www.mrc-lmb.cam.ac.uk/harry/mosflm/ MOSFLM package data scaling Phil R. Evans pre@mrc-lmb.cam.ac.uk 22/12/2005 Fortran_77 http://www.ccp4.ac.uk/dist/html/scala.html SCALA other 3.2.19 refinement Paul D. Adams PDAdams@lbl.gov C++ http://www.phenix-online.org/ PHENIX package 1.8_1069 data extraction PDB deposit@deposit.rcsb.org April 22, 2011 C++ http://sw-tools.pdb.org/apps/PDB_EXTRACT/ PDB_EXTRACT package 3.11 data collection ADSC Quantum Human Cyclophilin D Complexed with an Inhibitor 1 N N 2 N N 3 N N 4 N N X VAL 71 A VAL 28 HELX_P X GLY 84 A GLY 41 1 1 14 X THR 161 A THR 118 HELX_P X ASP 165 A ASP 122 5 2 5 X GLY 177 A GLY 134 HELX_P X PHE 187 A PHE 144 1 3 11 Isomerase/Isomerase Inhibitor Isomerase-Isomerase Inhibitor complex PPIF_HUMAN UNP 1 44 P30405 GNPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGKSIYGS RFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVKEGMDVVKKIESFGSKSGRTSKKIVITDC GQLS 44 207 4J5A 44 207 P30405 X 1 1 164 1 LYS engineered mutation ILE 175 4J5A X P30405 UNP 175 132 8 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel X PHE 95 A PHE 52 X ILE 99 A ILE 56 X MET 103 A MET 60 X ALA 106 A ALA 63 X PHE 154 A PHE 111 X CYS 157 A CYS 114 X VAL 139 A VAL 96 X MET 142 A MET 99 X VAL 170 A VAL 127 X GLU 176 A GLU 133 X LYS 57 A LYS 14 X LEU 66 A LEU 23 X LEU 47 A LEU 4 X ALA 54 A ALA 11 X ILE 198 A ILE 155 X GLN 205 A GLN 162 BINDING SITE FOR RESIDUE 67Z X 301 X 67Z 301 Software 17 BINDING SITE FOR RESIDUE DMS X 302 X DMS 302 Software 5 X ARG 97 A ARG 54 17 1_555 X PHE 102 A PHE 59 17 1_555 X MET 103 A MET 60 17 1_555 X GLN 105 A GLN 62 17 1_555 X GLY 114 A GLY 71 17 1_555 X ARG 124 A ARG 81 17 1_555 X ALA 143 A ALA 100 17 1_555 X ASN 144 A ASN 101 17 1_555 X THR 149 A THR 106 17 1_555 X GLY 151 A GLY 108 17 1_555 X GLN 153 A GLN 110 17 1_555 X PHE 155 A PHE 112 17 1_555 X LEU 164 A LEU 121 17 1_555 X HIS 168 A HIS 125 17 1_555 X HOH 469 D HOH 17 1_555 X HOH 486 D HOH 17 1_555 X HOH 525 D HOH 17 1_555 X VAL 174 A VAL 131 5 1_555 X ILE 175 A ILE 132 5 1_555 X GLU 176 A GLU 133 5 1_555 X GLY 177 A GLY 134 5 1_555 X MET 178 A MET 135 5 1_555 92 P 41 21 2