0.021531
0.012431
0.000000
-0.000000
0.024862
0.000000
0.000000
-0.000000
0.008291
0.00000
0.00000
0.00000
Jiang, S.
Gan, J.
Sun, H.
Huang, Z.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
36
90.00
90.00
120.00
46.444
46.444
120.612
C10 H14 N5 O7 P
347.221
y
ADENOSINE-5'-MONOPHOSPHATE
RNA linking
C9 H14 N3 O8 P
323.197
y
CYTIDINE-5'-MONOPHOSPHATE
RNA linking
C10 H14 N5 O8 P
363.221
y
GUANOSINE-5'-MONOPHOSPHATE
RNA linking
H2 O
18.015
WATER
non-polymer
K 1
39.098
POTASSIUM ION
non-polymer
C9 H13 N2 O8 P Se
387.142
n
1-(5-O-phosphono-beta-D-ribofuranosyl)-2-selanylpyrimidin-4(1H)-one
RNA linking
C9 H13 N2 O9 P
324.181
y
URIDINE-5'-MONOPHOSPHATE
RNA linking
N
1
N
O
N
2
N
P
N
3
N
O
N
4
N
O
N
5
N
O
N
6
N
C
N
7
R
C
N
8
N
O
N
9
S
C
N
10
N
O
N
11
R
C
N
12
N
O
N
13
R
C
Y
14
N
N
Y
15
N
C
Y
16
N
N
Y
17
N
C
Y
18
N
C
N
19
N
N
Y
20
N
N
Y
21
N
C
Y
22
N
N
Y
23
N
C
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
O
N
39
N
P
N
40
N
O
N
41
N
O
N
42
N
O
N
43
N
C
N
44
R
C
N
45
N
O
N
46
S
C
N
47
N
O
N
48
R
C
N
49
N
O
N
50
R
C
N
51
N
N
N
52
N
C
N
53
N
O
N
54
N
N
N
55
N
C
N
56
N
N
N
57
N
C
N
58
N
C
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
O
N
74
N
P
N
75
N
O
N
76
N
O
N
77
N
O
N
78
N
C
N
79
R
C
N
80
N
O
N
81
S
C
N
82
N
O
N
83
R
C
N
84
N
O
N
85
R
C
Y
86
N
N
Y
87
N
C
Y
88
N
N
Y
89
N
C
N
90
N
C
N
91
N
O
N
92
N
N
N
93
N
C
N
94
N
N
N
95
N
N
Y
96
N
C
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
O
N
112
N
H
N
113
N
H
N
114
N
K
N
115
N
P
N
116
N
N
N
117
N
C
N
118
N
SE
N
119
N
N
N
120
N
C
N
121
N
O
N
122
N
C
N
123
N
C
N
124
R
C
N
125
N
O
N
126
R
C
N
127
N
O
N
128
N
O
N
129
S
C
N
130
N
O
N
131
N
O
N
132
R
C
N
133
N
O
N
134
N
C
N
135
N
O
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
O
N
150
N
P
N
151
N
O
N
152
N
O
N
153
N
O
N
154
N
C
N
155
R
C
N
156
N
O
N
157
S
C
N
158
N
O
N
159
R
C
N
160
N
O
N
161
R
C
N
162
N
N
N
163
N
C
N
164
N
O
N
165
N
N
N
166
N
C
N
167
N
O
N
168
N
C
N
169
N
C
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
1
N
sing
N
2
N
sing
N
3
N
doub
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
Y
25
N
sing
Y
26
N
sing
Y
27
N
doub
N
28
N
sing
Y
29
N
sing
Y
30
N
sing
Y
31
N
doub
N
32
N
sing
Y
33
N
doub
N
34
N
sing
N
35
N
sing
Y
36
N
sing
Y
37
N
doub
N
38
N
sing
Y
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
doub
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
doub
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
doub
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
doub
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
Y
100
N
sing
Y
101
N
sing
Y
102
N
doub
N
103
N
sing
Y
104
N
sing
N
105
N
sing
Y
106
N
doub
N
107
N
doub
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
doub
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
doub
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
doub
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
doub
N
130
N
doub
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
doub
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
doub
N
184
N
sing
N
185
N
doub
N
186
N
sing
N
187
N
sing
To be Published
0353
Crystal structure of 2-Selenouridine containing RNA
10.2210/pdb4jah/pdb
pdb_00004jah
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2012-07-29
ADSC QUANTUM 315r
Double crystal, Si(111)
SINGLE WAVELENGTH
M
x-ray
1
0.9795
1.0
8.2.2
ALS
0.9795
SYNCHROTRON
ALS BEAMLINE 8.2.2
2590.506
RNA (5'-R(*GP*UP*GP*UP*AP*(RUS)P*AP*C)-3')
6
syn
polymer
39.098
POTASSIUM ION
2
syn
non-polymer
18.015
water
143
nat
water
no
yes
GUGUA(RUS)AC
GUGUAXAC
A,B,D,E,C,F
polyribonucleotide
n
n
n
n
n
n
n
n
1
2.42
49.09
VAPOR DIFFUSION, HANGING DROP
7.0
10% v/v MPD, 40 mM NaCacodylate pH 7.0, 12 mM Spermine tetra-HCl, 80 mM Sodium Chloride, 12mM Potassium Chloride, 20 mM Magnesium Chloride , VAPOR DIFFUSION, HANGING DROP, temperature 298K
298
-7.551
1
19
A
3
B
16
-1.033
A_G3:C16_B
1
-13.443
-0.262
-0.011
-0.213
1.907
1
20
A
4
B
15
1.631
A_U4:A15_B
2
-11.950
-0.048
0.106
-0.129
7.608
1
20
A
7
B
12
1.188
A_A7:U12_B
3
-7.769
0.037
0.275
-0.094
9.455
1
19
A
8
B
11
0.992
A_C8:G11_B
4
-9.359
0.357
0.054
-0.135
-10.389
1
19
D
11
C
8
0.040
D_G11:C8_C
5
-10.367
-0.158
-0.092
-0.137
-6.352
1
20
D
12
C
7
2.681
D_U12:A7_C
6
-12.262
-0.052
0.043
-0.070
-2.488
1
20
D
15
C
4
0.260
D_A15:U4_C
7
-11.970
0.089
0.168
-0.088
4.616
1
19
D
16
C
3
-0.295
D_C16:G3_C
8
-15.551
0.280
0.028
-0.154
-6.584
1
19
E
3
F
16
1.986
E_G3:C16_F
9
-9.546
-0.272
0.032
-0.098
0.852
1
20
E
4
F
15
0.600
E_U4:A15_F
10
-7.207
-0.075
0.290
-0.104
3.165
1
20
E
7
F
12
1.323
E_A7:U12_F
11
-11.399
0.145
0.098
-0.069
8.035
1
19
E
8
F
11
-0.196
E_C8:G11_F
12
-10.405
0.283
0.013
-0.136
2.853
32.414
A
A
3
4
8.595
B
B
16
15
3.042
4.781
0.540
-1.026
AA_G3U4:A15C16_BB
1
-0.540
0.971
32.064
-2.601
-1.053
3.017
33.412
A
A
7
8
8.276
B
B
12
11
3.256
4.743
0.019
-1.507
AA_A7C8:G11U12_BB
2
0.212
-0.371
33.082
-3.378
0.000
2.916
33.014
D
D
11
12
13.857
C
C
8
7
3.246
7.803
-0.032
-1.055
DD_G11U12:A7C8_CC
3
-0.735
1.306
32.096
-3.121
-0.062
2.901
35.019
D
D
15
16
7.992
C
C
4
3
3.091
4.793
-0.368
-1.104
DD_A15C16:G3U4_CC
4
1.383
-2.306
34.673
-2.498
0.804
2.999
33.454
E
E
3
4
6.209
F
F
16
15
3.126
3.560
-0.335
-1.233
EE_G3U4:A15C16_FF
5
-3.891
6.786
33.048
-2.696
-0.023
2.897
32.880
E
E
7
8
10.213
F
F
12
11
3.174
5.752
-0.076
-1.340
EE_A7C8:G11U12_FF
6
0.918
-1.631
32.374
-3.286
0.282
chem_comp_atom
chem_comp_bond
database_2
software
struct_conn
struct_site
repository
Initial release
Data collection
Database references
Derived calculations
Refinement description
1
0
2014-01-29
1
1
2024-02-28
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_software.name
_struct_conn.conn_type_id
_struct_conn.id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
RCSB
2013-02-18
REL
REL
K
POTASSIUM ION
HOH
water
32630
synthetic construct
sample
K
2
2
K
K
101
A
K
3
2
K
K
101
C
HOH
4
3
HOH
HOH
201
A
HOH
5
3
HOH
HOH
202
A
HOH
19
3
HOH
HOH
203
A
HOH
24
3
HOH
HOH
204
A
HOH
27
3
HOH
HOH
205
A
HOH
36
3
HOH
HOH
206
A
HOH
38
3
HOH
HOH
207
A
HOH
40
3
HOH
HOH
208
A
HOH
41
3
HOH
HOH
209
A
HOH
48
3
HOH
HOH
210
A
HOH
55
3
HOH
HOH
211
A
HOH
60
3
HOH
HOH
212
A
HOH
63
3
HOH
HOH
213
A
HOH
66
3
HOH
HOH
214
A
HOH
70
3
HOH
HOH
215
A
HOH
84
3
HOH
HOH
216
A
HOH
90
3
HOH
HOH
217
A
HOH
91
3
HOH
HOH
218
A
HOH
97
3
HOH
HOH
219
A
HOH
117
3
HOH
HOH
220
A
HOH
118
3
HOH
HOH
221
A
HOH
124
3
HOH
HOH
222
A
HOH
135
3
HOH
HOH
223
A
HOH
136
3
HOH
HOH
224
A
HOH
144
3
HOH
HOH
225
A
HOH
33
3
HOH
HOH
226
A
HOH
31
3
HOH
HOH
227
A
HOH
10
3
HOH
HOH
101
B
HOH
13
3
HOH
HOH
102
B
HOH
14
3
HOH
HOH
103
B
HOH
17
3
HOH
HOH
104
B
HOH
22
3
HOH
HOH
105
B
HOH
25
3
HOH
HOH
106
B
HOH
32
3
HOH
HOH
107
B
HOH
37
3
HOH
HOH
108
B
HOH
47
3
HOH
HOH
109
B
HOH
61
3
HOH
HOH
110
B
HOH
68
3
HOH
HOH
111
B
HOH
74
3
HOH
HOH
112
B
HOH
78
3
HOH
HOH
113
B
HOH
82
3
HOH
HOH
114
B
HOH
83
3
HOH
HOH
115
B
HOH
87
3
HOH
HOH
116
B
HOH
88
3
HOH
HOH
117
B
HOH
95
3
HOH
HOH
118
B
HOH
98
3
HOH
HOH
119
B
HOH
100
3
HOH
HOH
120
B
HOH
107
3
HOH
HOH
121
B
HOH
108
3
HOH
HOH
122
B
HOH
112
3
HOH
HOH
123
B
HOH
140
3
HOH
HOH
124
B
HOH
142
3
HOH
HOH
125
B
HOH
146
3
HOH
HOH
126
B
HOH
147
3
HOH
HOH
127
B
HOH
20
3
HOH
HOH
128
B
HOH
62
3
HOH
HOH
101
D
HOH
3
3
HOH
HOH
102
D
HOH
6
3
HOH
HOH
103
D
HOH
23
3
HOH
HOH
104
D
HOH
26
3
HOH
HOH
105
D
HOH
49
3
HOH
HOH
106
D
HOH
51
3
HOH
HOH
107
D
HOH
56
3
HOH
HOH
108
D
HOH
69
3
HOH
HOH
109
D
HOH
77
3
HOH
HOH
110
D
HOH
79
3
HOH
HOH
111
D
HOH
93
3
HOH
HOH
112
D
HOH
94
3
HOH
HOH
113
D
HOH
96
3
HOH
HOH
114
D
HOH
99
3
HOH
HOH
115
D
HOH
103
3
HOH
HOH
116
D
HOH
116
3
HOH
HOH
117
D
HOH
119
3
HOH
HOH
118
D
HOH
127
3
HOH
HOH
119
D
HOH
132
3
HOH
HOH
120
D
HOH
134
3
HOH
HOH
121
D
HOH
137
3
HOH
HOH
122
D
HOH
139
3
HOH
HOH
123
D
HOH
11
3
HOH
HOH
101
E
HOH
15
3
HOH
HOH
102
E
HOH
18
3
HOH
HOH
103
E
HOH
35
3
HOH
HOH
104
E
HOH
43
3
HOH
HOH
105
E
HOH
45
3
HOH
HOH
106
E
HOH
46
3
HOH
HOH
107
E
HOH
50
3
HOH
HOH
108
E
HOH
52
3
HOH
HOH
109
E
HOH
57
3
HOH
HOH
110
E
HOH
58
3
HOH
HOH
111
E
HOH
109
3
HOH
HOH
112
E
HOH
111
3
HOH
HOH
113
E
HOH
114
3
HOH
HOH
114
E
HOH
115
3
HOH
HOH
115
E
HOH
120
3
HOH
HOH
116
E
HOH
121
3
HOH
HOH
117
E
HOH
130
3
HOH
HOH
118
E
HOH
141
3
HOH
HOH
119
E
HOH
153
3
HOH
HOH
120
E
HOH
155
3
HOH
HOH
121
E
HOH
21
3
HOH
HOH
201
C
HOH
16
3
HOH
HOH
202
C
HOH
34
3
HOH
HOH
203
C
HOH
39
3
HOH
HOH
204
C
HOH
53
3
HOH
HOH
205
C
HOH
54
3
HOH
HOH
206
C
HOH
64
3
HOH
HOH
207
C
HOH
67
3
HOH
HOH
208
C
HOH
71
3
HOH
HOH
209
C
HOH
80
3
HOH
HOH
210
C
HOH
85
3
HOH
HOH
211
C
HOH
86
3
HOH
HOH
212
C
HOH
89
3
HOH
HOH
213
C
HOH
92
3
HOH
HOH
214
C
HOH
101
3
HOH
HOH
215
C
HOH
104
3
HOH
HOH
216
C
HOH
110
3
HOH
HOH
217
C
HOH
113
3
HOH
HOH
218
C
HOH
138
3
HOH
HOH
219
C
HOH
150
3
HOH
HOH
220
C
HOH
151
3
HOH
HOH
221
C
HOH
44
3
HOH
HOH
222
C
HOH
30
3
HOH
HOH
101
F
HOH
8
3
HOH
HOH
102
F
HOH
9
3
HOH
HOH
103
F
HOH
12
3
HOH
HOH
104
F
HOH
28
3
HOH
HOH
105
F
HOH
29
3
HOH
HOH
106
F
HOH
42
3
HOH
HOH
107
F
HOH
65
3
HOH
HOH
108
F
HOH
72
3
HOH
HOH
109
F
HOH
73
3
HOH
HOH
110
F
HOH
75
3
HOH
HOH
111
F
HOH
76
3
HOH
HOH
112
F
HOH
102
3
HOH
HOH
113
F
HOH
106
3
HOH
HOH
114
F
HOH
123
3
HOH
HOH
115
F
HOH
125
3
HOH
HOH
116
F
HOH
128
3
HOH
HOH
117
F
HOH
129
3
HOH
HOH
118
F
HOH
131
3
HOH
HOH
119
F
HOH
133
3
HOH
HOH
120
F
HOH
145
3
HOH
HOH
121
F
HOH
152
3
HOH
HOH
122
F
G
1
n
1
G
1
A
U
2
n
2
U
2
A
G
3
n
3
G
3
A
U
4
n
4
U
4
A
A
5
n
5
A
5
A
RUS
6
n
6
RUS
6
A
A
7
n
7
A
7
A
C
8
n
8
C
8
A
G
9
n
1
G
9
B
U
10
n
2
U
10
B
G
11
n
3
G
11
B
U
12
n
4
U
12
B
A
13
n
5
A
13
B
RUS
14
n
6
RUS
14
B
A
15
n
7
A
15
B
C
16
n
8
C
16
B
G
9
n
1
G
9
D
U
10
n
2
U
10
D
G
11
n
3
G
11
D
U
12
n
4
U
12
D
A
13
n
5
A
13
D
RUS
14
n
6
RUS
14
D
A
15
n
7
A
15
D
C
16
n
8
C
16
D
G
1
n
1
G
1
E
U
2
n
2
U
2
E
G
3
n
3
G
3
E
U
4
n
4
U
4
E
A
5
n
5
A
5
E
RUS
6
n
6
RUS
6
E
A
7
n
7
A
7
E
C
8
n
8
C
8
E
G
1
n
1
G
1
C
U
2
n
2
U
2
C
G
3
n
3
G
3
C
U
4
n
4
U
4
C
A
5
n
5
A
5
C
RUS
6
n
6
RUS
6
C
A
7
n
7
A
7
C
C
8
n
8
C
8
C
G
9
n
1
G
9
F
U
10
n
2
U
10
F
G
11
n
3
G
11
F
U
12
n
4
U
12
F
A
13
n
5
A
13
F
RUS
14
n
6
RUS
14
F
A
15
n
7
A
15
F
C
16
n
8
C
16
F
author_and_software_defined_assembly
PISA
6
hexameric
7970
-146
7970
A
C
8
A
O3'
C
8
1_555
A
K
101
G
K
K
1_555
A
C
8
A
O2'
C
8
1_555
56.9
A
C
8
A
O3'
C
8
1_555
A
K
101
G
K
K
1_555
E
A
7
D
OP1
A
7
1_555
73.3
A
C
8
A
O2'
C
8
1_555
A
K
101
G
K
K
1_555
E
A
7
D
OP1
A
7
1_555
81.8
A
C
8
A
O3'
C
8
1_555
A
K
101
G
K
K
1_555
E
HOH
106
L
O
HOH
1_555
121.8
A
C
8
A
O2'
C
8
1_555
A
K
101
G
K
K
1_555
E
HOH
106
L
O
HOH
1_555
70.1
E
A
7
D
OP1
A
7
1_555
A
K
101
G
K
K
1_555
E
HOH
106
L
O
HOH
1_555
77.5
C
G
1
E
O6
G
1
1_555
C
K
101
H
K
K
1_555
C
U
2
E
O4
U
2
1_555
66.6
C
G
1
E
O6
G
1
1_555
C
K
101
H
K
K
1_555
C
HOH
206
M
O
HOH
1_555
81.2
C
U
2
E
O4
U
2
1_555
C
K
101
H
K
K
1_555
C
HOH
206
M
O
HOH
1_555
62.9
A
RUS
6
A
RUS
6
U
B
RUS
14
B
RUS
6
U
D
RUS
14
C
RUS
6
U
E
RUS
6
D
RUS
6
U
C
RUS
6
E
RUS
6
U
F
RUS
14
F
RUS
6
U
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
10.53
1.10
110.50
121.03
A
A
A
O3'
P
OP2
G
U
U
3
4
4
Y
1
-7.97
1.20
119.70
111.73
D
D
D
C3'
O3'
P
U
U
A
12
12
13
Y
1
11.09
1.10
110.50
121.59
D
D
D
O3'
P
OP2
U
A
A
12
13
13
Y
1
-8.73
0.90
105.70
96.97
D
D
D
O5'
P
OP2
A
A
A
13
13
13
N
1
-8.28
0.90
105.70
97.42
E
E
E
O5'
P
OP1
U
U
U
2
2
2
N
1
7.84
1.10
110.50
118.34
C
C
C
O3'
P
OP2
G
U
U
3
4
4
Y
1
14.22
1.10
110.50
124.72
C
C
C
O3'
P
OP2
U
A
A
4
5
5
Y
1
-9.26
0.90
105.70
96.44
C
C
C
O5'
P
OP2
A
A
A
5
5
5
N
1
B
B
O3'
P
U
A
12
13
-0.099
0.012
1.607
1.508
Y
1
E
E
O3'
P
A
RUS
5
6
-0.094
0.012
1.607
1.513
Y
1
C
C
O3'
P
U
A
4
5
-0.083
0.012
1.607
1.524
Y
22.552
0.93
0.46
-0.00
0.93
-0.00
-1.39
0.961
0.950
HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT
0.23807
0.20826
0.2248
0.20975
1.50
40.22
1228
23662
22895
5.1
96.76
1.512
0.056
RANDOM
1
THROUGHOUT
2
246D
0.080
0.082
0.80
0.80
1.20
MAXIMUM LIKELIHOOD
MASK
1.50
40.22
143
1147
2
1002
0
0.014
0.011
1116
2.305
1.452
1728
0.115
0.200
192
0.025
0.020
492
0.282
0.311
1.540
64
1186
20
73.62
1.50
40.222
4JAH
24918
24253
0.08
1
20.5
4.1
97.33
1.50
1.55
2.4
0.35
1
2.1
64.6
data collection
Web-Ice
phasing
PHASER
refinement
REFMAC
5.6.0117
data reduction
HKL-2000
data scaling
HKL-2000
Crystal structure of 2-Selenouridine containing RNA
1
N
N
1
N
N
1
N
N
1
N
N
1
N
N
1
N
N
2
N
N
2
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
covale
1.565
both
A
A
5
A
O3'
A
5
1_555
A
RUS
6
A
P
RUS
6
1_555
covale
1.549
one
A
RUS
6
A
O3'
RUS
6
1_555
A
A
7
A
P
A
7
1_555
covale
1.590
both
B
A
13
B
O3'
A
5
1_555
B
RUS
14
B
P
RUS
6
1_555
covale
1.604
one
B
RUS
14
B
O3'
RUS
6
1_555
B
A
15
B
P
A
7
1_555
covale
1.596
both
D
A
13
C
O3'
A
5
1_555
D
RUS
14
C
P
RUS
6
1_555
covale
1.614
one
D
RUS
14
C
O3'
RUS
6
1_555
D
A
15
C
P
A
7
1_555
covale
1.513
both
E
A
5
D
O3'
A
5
1_555
E
RUS
6
D
P
RUS
6
1_555
covale
1.581
one
E
RUS
6
D
O3'
RUS
6
1_555
E
A
7
D
P
A
7
1_555
covale
1.591
both
C
A
5
E
O3'
A
5
1_555
C
RUS
6
E
P
RUS
6
1_555
covale
1.613
one
C
RUS
6
E
O3'
RUS
6
1_555
C
A
7
E
P
A
7
1_555
covale
1.579
both
F
A
13
F
O3'
A
5
1_555
F
RUS
14
F
P
RUS
6
1_555
covale
1.564
one
F
RUS
14
F
O3'
RUS
6
1_555
F
A
15
F
P
A
7
1_555
metalc
2.727
A
C
8
A
O3'
C
8
1_555
A
K
101
G
K
K
1_555
metalc
2.876
A
C
8
A
O2'
C
8
1_555
A
K
101
G
K
K
1_555
metalc
2.944
A
K
101
G
K
K
1_555
E
A
7
D
OP1
A
7
1_555
metalc
2.762
A
K
101
G
K
K
1_555
E
HOH
106
L
O
HOH
1_555
metalc
3.209
C
G
1
E
O6
G
1
1_555
C
K
101
H
K
K
1_555
metalc
3.375
C
U
2
E
O4
U
2
1_555
C
K
101
H
K
K
1_555
metalc
2.362
C
K
101
H
K
K
1_555
C
HOH
206
M
O
HOH
1_555
hydrog
WATSON-CRICK
A
G
3
A
N1
G
3
1_555
B
C
16
B
N3
C
8
1_555
hydrog
WATSON-CRICK
A
G
3
A
N2
G
3
1_555
B
C
16
B
O2
C
8
1_555
hydrog
WATSON-CRICK
A
G
3
A
O6
G
3
1_555
B
C
16
B
N4
C
8
1_555
hydrog
WATSON-CRICK
A
U
4
A
N3
U
4
1_555
B
A
15
B
N1
A
7
1_555
hydrog
WATSON-CRICK
A
U
4
A
O4
U
4
1_555
B
A
15
B
N6
A
7
1_555
hydrog
WATSON-CRICK
A
A
7
A
N1
A
7
1_555
B
U
12
B
N3
U
4
1_555
hydrog
WATSON-CRICK
A
A
7
A
N6
A
7
1_555
B
U
12
B
O4
U
4
1_555
hydrog
WATSON-CRICK
A
C
8
A
N3
C
8
1_555
B
G
11
B
N1
G
3
1_555
hydrog
WATSON-CRICK
A
C
8
A
N4
C
8
1_555
B
G
11
B
O6
G
3
1_555
hydrog
WATSON-CRICK
A
C
8
A
O2
C
8
1_555
B
G
11
B
N2
G
3
1_555
hydrog
WATSON-CRICK
D
G
11
C
N1
G
3
1_555
C
C
8
E
N3
C
8
1_555
hydrog
WATSON-CRICK
D
G
11
C
N2
G
3
1_555
C
C
8
E
O2
C
8
1_555
hydrog
WATSON-CRICK
D
G
11
C
O6
G
3
1_555
C
C
8
E
N4
C
8
1_555
hydrog
WATSON-CRICK
D
U
12
C
N3
U
4
1_555
C
A
7
E
N1
A
7
1_555
hydrog
WATSON-CRICK
D
U
12
C
O4
U
4
1_555
C
A
7
E
N6
A
7
1_555
hydrog
WATSON-CRICK
D
A
15
C
N1
A
7
1_555
C
U
4
E
N3
U
4
1_555
hydrog
WATSON-CRICK
D
A
15
C
N6
A
7
1_555
C
U
4
E
O4
U
4
1_555
hydrog
WATSON-CRICK
D
C
16
C
N3
C
8
1_555
C
G
3
E
N1
G
3
1_555
hydrog
WATSON-CRICK
D
C
16
C
N4
C
8
1_555
C
G
3
E
O6
G
3
1_555
hydrog
WATSON-CRICK
D
C
16
C
O2
C
8
1_555
C
G
3
E
N2
G
3
1_555
hydrog
WATSON-CRICK
E
G
3
D
N1
G
3
1_555
F
C
16
F
N3
C
8
1_555
hydrog
WATSON-CRICK
E
G
3
D
N2
G
3
1_555
F
C
16
F
O2
C
8
1_555
hydrog
WATSON-CRICK
E
G
3
D
O6
G
3
1_555
F
C
16
F
N4
C
8
1_555
hydrog
WATSON-CRICK
E
U
4
D
N3
U
4
1_555
F
A
15
F
N1
A
7
1_555
hydrog
WATSON-CRICK
E
U
4
D
O4
U
4
1_555
F
A
15
F
N6
A
7
1_555
hydrog
WATSON-CRICK
E
A
7
D
N1
A
7
1_555
F
U
12
F
N3
U
4
1_555
hydrog
WATSON-CRICK
E
A
7
D
N6
A
7
1_555
F
U
12
F
O4
U
4
1_555
hydrog
WATSON-CRICK
E
C
8
D
N3
C
8
1_555
F
G
11
F
N1
G
3
1_555
hydrog
WATSON-CRICK
E
C
8
D
N4
C
8
1_555
F
G
11
F
O6
G
3
1_555
hydrog
WATSON-CRICK
E
C
8
D
O2
C
8
1_555
F
G
11
F
N2
G
3
1_555
RNA
2-selenouridine, high fidelity base pairing, RNA
4JAH
PDB
1
4JAH
1
8
4JAH
1
8
4JAH
A
1
1
8
9
16
4JAH
9
16
4JAH
B
1
1
8
9
16
4JAH
9
16
4JAH
D
1
1
8
1
8
4JAH
1
8
4JAH
E
1
1
8
1
8
4JAH
1
8
4JAH
C
1
1
8
9
16
4JAH
9
16
4JAH
F
1
1
8
BINDING SITE FOR RESIDUE K A 101
A
K
101
Software
4
BINDING SITE FOR RESIDUE K C 101
C
K
101
Software
7
A
C
8
A
C
8
4
1_555
D
HOH
115
K
HOH
4
4_455
E
A
7
D
A
7
4
1_555
E
HOH
106
L
HOH
4
1_555
A
G
1
A
G
1
7
5_664
A
U
2
A
U
2
7
5_664
A
HOH
201
I
HOH
7
5_664
A
HOH
218
I
HOH
7
5_664
C
G
1
E
G
1
7
1_555
C
U
2
E
U
2
7
1_555
C
HOH
206
M
HOH
7
1_555
152
P 31 2 1