0.025460
0.000000
0.000000
0.000000
0.020052
0.000000
0.000000
0.000000
0.011703
0.00000
0.00000
0.00000
Fan, Y.
Tan, K.
Bigelow, L.
Bearden, J.
Joachimiak, A.
Midwest Center for Structural Genomics (MCSG)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
39.277
49.871
85.451
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Ca 2
40.078
CALCIUM ION
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C H2 O2
46.025
FORMIC ACID
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C8 H18 N2 O2
174.241
n
N-DIMETHYL-LYSINE
L-peptide linking
C5 H11 N O2 Se
196.106
n
SELENOMETHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
To be Published
0353
The crystal structure of an aerotolerance-related membrane protein from Bacteroides fragilis NCTC 9343 with multiple mutations to serines.
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
mirror
CCD
2012-12-18
ADSC QUANTUM 315r
Si 111 crystal
SINGLE WAVELENGTH
M
x-ray
1
0.97918
1.0
19-ID
APS
0.97918
SYNCHROTRON
APS BEAMLINE 19-ID
23138.137
Aerotolerance-related membrane protein
UNP residues 85-296
E208A, E212S, A213S, A214S, K215S, K216S
1
man
polymer
46.025
FORMIC ACID
1
syn
non-polymer
40.078
CALCIUM ION
1
syn
non-polymer
18.015
water
136
nat
water
no
yes
SNAVKRKGVEV(MSE)IALDISNS(MSE)LAQDVQPSRLEKA(MLY)RLISKLVDG(MSE)ENDKVG(MSE)IVFAGDAF
TQLPITSDYISAK(MSE)FLESISPSLISKQGTAIGAAINLAARSFTPQEGVGRAIVVITDGENHEGGAVAAAKSSSSSG
IQVNVLGVGLPDGAPIPIEGSNDFRRDREGNVIVTRLNEA(MSE)CQEIAKEGNGIYIRVDNSNSAQKAINQEINK
(MSE)AKSDVE
SNAVKRKGVEVMIALDISNSMLAQDVQPSRLEKAKRLISKLVDGMENDKVGMIVFAGDAFTQLPITSDYISAKMFLESIS
PSLISKQGTAIGAAINLAARSFTPQEGVGRAIVVITDGENHEGGAVAAAKSSSSSGIQVNVLGVGLPDGAPIPIEGSNDF
RRDREGNVIVTRLNEAMCQEIAKEGNGIYIRVDNSNSAQKAINQEINKMAKSDVE
A
MCSG-APC105901
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
NCTC 9343
sample
batB, BF2500, BF9343_2419
272559
Bacteroides fragilis
469008
Escherichia coli
BL21(DE3)magic
plasmid
pMCSG19
1
1.81
31.99
VAPOR DIFFUSION, SITTING DROP
6.6
0.1M Bis-Tris,
25% (w/v) PEG3350, pH 6.6, VAPOR DIFFUSION, SITTING DROP, temperature 297K
297
Midwest Center for Structural Genomics
MCSG
PSI:Biology
repository
Initial release
1
0
2013-03-27
Y
RCSB
Y
RCSB
2013-02-25
REL
REL
FMT
FORMIC ACID
CA
CALCIUM ION
HOH
water
FMT
1
2
FMT
FMT
301
A
CA
1
3
CA
CA
302
A
HOH
1
4
HOH
HOH
401
A
HOH
2
4
HOH
HOH
402
A
HOH
3
4
HOH
HOH
403
A
HOH
4
4
HOH
HOH
404
A
HOH
5
4
HOH
HOH
405
A
HOH
6
4
HOH
HOH
406
A
HOH
7
4
HOH
HOH
407
A
HOH
8
4
HOH
HOH
408
A
HOH
9
4
HOH
HOH
409
A
HOH
10
4
HOH
HOH
410
A
HOH
11
4
HOH
HOH
411
A
HOH
12
4
HOH
HOH
412
A
HOH
13
4
HOH
HOH
413
A
HOH
14
4
HOH
HOH
414
A
HOH
15
4
HOH
HOH
415
A
HOH
16
4
HOH
HOH
416
A
HOH
17
4
HOH
HOH
417
A
HOH
18
4
HOH
HOH
418
A
HOH
19
4
HOH
HOH
419
A
HOH
20
4
HOH
HOH
420
A
HOH
21
4
HOH
HOH
421
A
HOH
22
4
HOH
HOH
422
A
HOH
23
4
HOH
HOH
423
A
HOH
24
4
HOH
HOH
424
A
HOH
25
4
HOH
HOH
425
A
HOH
26
4
HOH
HOH
426
A
HOH
27
4
HOH
HOH
427
A
HOH
28
4
HOH
HOH
428
A
HOH
29
4
HOH
HOH
429
A
HOH
30
4
HOH
HOH
430
A
HOH
31
4
HOH
HOH
431
A
HOH
32
4
HOH
HOH
432
A
HOH
33
4
HOH
HOH
433
A
HOH
34
4
HOH
HOH
434
A
HOH
35
4
HOH
HOH
435
A
HOH
36
4
HOH
HOH
436
A
HOH
37
4
HOH
HOH
437
A
HOH
38
4
HOH
HOH
438
A
HOH
39
4
HOH
HOH
439
A
HOH
40
4
HOH
HOH
440
A
HOH
41
4
HOH
HOH
441
A
HOH
42
4
HOH
HOH
442
A
HOH
43
4
HOH
HOH
443
A
HOH
44
4
HOH
HOH
444
A
HOH
45
4
HOH
HOH
445
A
HOH
46
4
HOH
HOH
446
A
HOH
47
4
HOH
HOH
447
A
HOH
48
4
HOH
HOH
448
A
HOH
49
4
HOH
HOH
449
A
HOH
50
4
HOH
HOH
450
A
HOH
51
4
HOH
HOH
451
A
HOH
52
4
HOH
HOH
452
A
HOH
53
4
HOH
HOH
453
A
HOH
54
4
HOH
HOH
454
A
HOH
55
4
HOH
HOH
455
A
HOH
56
4
HOH
HOH
456
A
HOH
57
4
HOH
HOH
457
A
HOH
58
4
HOH
HOH
458
A
HOH
59
4
HOH
HOH
459
A
HOH
60
4
HOH
HOH
460
A
HOH
61
4
HOH
HOH
461
A
HOH
62
4
HOH
HOH
462
A
HOH
63
4
HOH
HOH
463
A
HOH
64
4
HOH
HOH
464
A
HOH
65
4
HOH
HOH
465
A
HOH
66
4
HOH
HOH
466
A
HOH
67
4
HOH
HOH
467
A
HOH
68
4
HOH
HOH
468
A
HOH
69
4
HOH
HOH
469
A
HOH
70
4
HOH
HOH
470
A
HOH
71
4
HOH
HOH
471
A
HOH
72
4
HOH
HOH
472
A
HOH
73
4
HOH
HOH
473
A
HOH
74
4
HOH
HOH
474
A
HOH
75
4
HOH
HOH
475
A
HOH
76
4
HOH
HOH
476
A
HOH
77
4
HOH
HOH
477
A
HOH
78
4
HOH
HOH
478
A
HOH
79
4
HOH
HOH
479
A
HOH
80
4
HOH
HOH
480
A
HOH
81
4
HOH
HOH
481
A
HOH
82
4
HOH
HOH
482
A
HOH
83
4
HOH
HOH
483
A
HOH
84
4
HOH
HOH
484
A
HOH
85
4
HOH
HOH
485
A
HOH
86
4
HOH
HOH
486
A
HOH
87
4
HOH
HOH
487
A
HOH
88
4
HOH
HOH
488
A
HOH
89
4
HOH
HOH
489
A
HOH
90
4
HOH
HOH
490
A
HOH
91
4
HOH
HOH
491
A
HOH
92
4
HOH
HOH
492
A
HOH
93
4
HOH
HOH
493
A
HOH
94
4
HOH
HOH
494
A
HOH
95
4
HOH
HOH
495
A
HOH
96
4
HOH
HOH
496
A
HOH
97
4
HOH
HOH
497
A
HOH
98
4
HOH
HOH
498
A
HOH
99
4
HOH
HOH
499
A
HOH
100
4
HOH
HOH
500
A
HOH
101
4
HOH
HOH
501
A
HOH
102
4
HOH
HOH
502
A
HOH
103
4
HOH
HOH
503
A
HOH
104
4
HOH
HOH
504
A
HOH
105
4
HOH
HOH
505
A
HOH
106
4
HOH
HOH
506
A
HOH
107
4
HOH
HOH
507
A
HOH
108
4
HOH
HOH
508
A
HOH
109
4
HOH
HOH
509
A
HOH
110
4
HOH
HOH
510
A
HOH
111
4
HOH
HOH
511
A
HOH
112
4
HOH
HOH
512
A
HOH
113
4
HOH
HOH
513
A
HOH
114
4
HOH
HOH
514
A
HOH
115
4
HOH
HOH
515
A
HOH
116
4
HOH
HOH
516
A
HOH
117
4
HOH
HOH
517
A
HOH
118
4
HOH
HOH
518
A
HOH
119
4
HOH
HOH
519
A
HOH
120
4
HOH
HOH
520
A
HOH
121
4
HOH
HOH
521
A
HOH
122
4
HOH
HOH
522
A
HOH
123
4
HOH
HOH
523
A
HOH
124
4
HOH
HOH
524
A
HOH
125
4
HOH
HOH
525
A
HOH
126
4
HOH
HOH
526
A
HOH
127
4
HOH
HOH
527
A
HOH
128
4
HOH
HOH
528
A
HOH
129
4
HOH
HOH
529
A
HOH
130
4
HOH
HOH
530
A
HOH
131
4
HOH
HOH
531
A
HOH
132
4
HOH
HOH
532
A
HOH
133
4
HOH
HOH
533
A
HOH
134
4
HOH
HOH
534
A
HOH
135
4
HOH
HOH
535
A
HOH
136
4
HOH
HOH
536
A
n
1
82
A
n
2
83
A
n
3
84
A
n
4
85
A
n
5
86
A
n
6
87
A
n
7
88
A
GLY
89
n
8
GLY
89
A
VAL
90
n
9
VAL
90
A
GLU
91
n
10
GLU
91
A
VAL
92
n
11
VAL
92
A
MSE
93
n
12
MSE
93
A
ILE
94
n
13
ILE
94
A
ALA
95
n
14
ALA
95
A
LEU
96
n
15
LEU
96
A
ASP
97
n
16
ASP
97
A
ILE
98
n
17
ILE
98
A
SER
99
n
18
SER
99
A
ASN
100
n
19
ASN
100
A
SER
101
n
20
SER
101
A
MSE
102
n
21
MSE
102
A
LEU
103
n
22
LEU
103
A
ALA
104
n
23
ALA
104
A
GLN
105
n
24
GLN
105
A
ASP
106
n
25
ASP
106
A
VAL
107
n
26
VAL
107
A
GLN
108
n
27
GLN
108
A
PRO
109
n
28
PRO
109
A
SER
110
n
29
SER
110
A
ARG
111
n
30
ARG
111
A
LEU
112
n
31
LEU
112
A
GLU
113
n
32
GLU
113
A
LYS
114
n
33
LYS
114
A
ALA
115
n
34
ALA
115
A
MLY
116
n
35
MLY
116
A
ARG
117
n
36
ARG
117
A
LEU
118
n
37
LEU
118
A
ILE
119
n
38
ILE
119
A
SER
120
n
39
SER
120
A
LYS
121
n
40
LYS
121
A
LEU
122
n
41
LEU
122
A
VAL
123
n
42
VAL
123
A
ASP
124
n
43
ASP
124
A
GLY
125
n
44
GLY
125
A
MSE
126
n
45
MSE
126
A
GLU
127
n
46
GLU
127
A
ASN
128
n
47
ASN
128
A
ASP
129
n
48
ASP
129
A
LYS
130
n
49
LYS
130
A
VAL
131
n
50
VAL
131
A
GLY
132
n
51
GLY
132
A
MSE
133
n
52
MSE
133
A
ILE
134
n
53
ILE
134
A
VAL
135
n
54
VAL
135
A
PHE
136
n
55
PHE
136
A
ALA
137
n
56
ALA
137
A
GLY
138
n
57
GLY
138
A
ASP
139
n
58
ASP
139
A
ALA
140
n
59
ALA
140
A
PHE
141
n
60
PHE
141
A
THR
142
n
61
THR
142
A
GLN
143
n
62
GLN
143
A
LEU
144
n
63
LEU
144
A
PRO
145
n
64
PRO
145
A
ILE
146
n
65
ILE
146
A
THR
147
n
66
THR
147
A
SER
148
n
67
SER
148
A
ASP
149
n
68
ASP
149
A
TYR
150
n
69
TYR
150
A
ILE
151
n
70
ILE
151
A
SER
152
n
71
SER
152
A
ALA
153
n
72
ALA
153
A
LYS
154
n
73
LYS
154
A
MSE
155
n
74
MSE
155
A
PHE
156
n
75
PHE
156
A
LEU
157
n
76
LEU
157
A
GLU
158
n
77
GLU
158
A
SER
159
n
78
SER
159
A
ILE
160
n
79
ILE
160
A
SER
161
n
80
SER
161
A
PRO
162
n
81
PRO
162
A
SER
163
n
82
SER
163
A
LEU
164
n
83
LEU
164
A
ILE
165
n
84
ILE
165
A
n
85
166
A
LYS
167
n
86
LYS
167
A
GLN
168
n
87
GLN
168
A
GLY
169
n
88
GLY
169
A
THR
170
n
89
THR
170
A
ALA
171
n
90
ALA
171
A
ILE
172
n
91
ILE
172
A
GLY
173
n
92
GLY
173
A
ALA
174
n
93
ALA
174
A
ALA
175
n
94
ALA
175
A
ILE
176
n
95
ILE
176
A
ASN
177
n
96
ASN
177
A
LEU
178
n
97
LEU
178
A
ALA
179
n
98
ALA
179
A
ALA
180
n
99
ALA
180
A
ARG
181
n
100
ARG
181
A
SER
182
n
101
SER
182
A
PHE
183
n
102
PHE
183
A
THR
184
n
103
THR
184
A
PRO
185
n
104
PRO
185
A
GLN
186
n
105
GLN
186
A
GLU
187
n
106
GLU
187
A
GLY
188
n
107
GLY
188
A
VAL
189
n
108
VAL
189
A
GLY
190
n
109
GLY
190
A
ARG
191
n
110
ARG
191
A
ALA
192
n
111
ALA
192
A
ILE
193
n
112
ILE
193
A
VAL
194
n
113
VAL
194
A
VAL
195
n
114
VAL
195
A
ILE
196
n
115
ILE
196
A
THR
197
n
116
THR
197
A
ASP
198
n
117
ASP
198
A
GLY
199
n
118
GLY
199
A
GLU
200
n
119
GLU
200
A
ASN
201
n
120
ASN
201
A
HIS
202
n
121
HIS
202
A
GLU
203
n
122
GLU
203
A
GLY
204
n
123
GLY
204
A
GLY
205
n
124
GLY
205
A
ALA
206
n
125
ALA
206
A
VAL
207
n
126
VAL
207
A
ALA
208
n
127
ALA
208
A
ALA
209
n
128
ALA
209
A
ALA
210
n
129
ALA
210
A
LYS
211
n
130
LYS
211
A
SER
212
n
131
SER
212
A
SER
213
n
132
SER
213
A
SER
214
n
133
SER
214
A
SER
215
n
134
SER
215
A
SER
216
n
135
SER
216
A
GLY
217
n
136
GLY
217
A
ILE
218
n
137
ILE
218
A
GLN
219
n
138
GLN
219
A
VAL
220
n
139
VAL
220
A
ASN
221
n
140
ASN
221
A
VAL
222
n
141
VAL
222
A
LEU
223
n
142
LEU
223
A
GLY
224
n
143
GLY
224
A
VAL
225
n
144
VAL
225
A
GLY
226
n
145
GLY
226
A
LEU
227
n
146
LEU
227
A
PRO
228
n
147
PRO
228
A
ASP
229
n
148
ASP
229
A
GLY
230
n
149
GLY
230
A
ALA
231
n
150
ALA
231
A
PRO
232
n
151
PRO
232
A
ILE
233
n
152
ILE
233
A
PRO
234
n
153
PRO
234
A
ILE
235
n
154
ILE
235
A
GLU
236
n
155
GLU
236
A
GLY
237
n
156
GLY
237
A
SER
238
n
157
SER
238
A
ASN
239
n
158
ASN
239
A
ASP
240
n
159
ASP
240
A
PHE
241
n
160
PHE
241
A
ARG
242
n
161
ARG
242
A
ARG
243
n
162
ARG
243
A
ASP
244
n
163
ASP
244
A
ARG
245
n
164
ARG
245
A
GLU
246
n
165
GLU
246
A
GLY
247
n
166
GLY
247
A
ASN
248
n
167
ASN
248
A
VAL
249
n
168
VAL
249
A
ILE
250
n
169
ILE
250
A
VAL
251
n
170
VAL
251
A
THR
252
n
171
THR
252
A
ARG
253
n
172
ARG
253
A
LEU
254
n
173
LEU
254
A
ASN
255
n
174
ASN
255
A
GLU
256
n
175
GLU
256
A
ALA
257
n
176
ALA
257
A
MSE
258
n
177
MSE
258
A
CYS
259
n
178
CYS
259
A
GLN
260
n
179
GLN
260
A
GLU
261
n
180
GLU
261
A
ILE
262
n
181
ILE
262
A
ALA
263
n
182
ALA
263
A
LYS
264
n
183
LYS
264
A
GLU
265
n
184
GLU
265
A
GLY
266
n
185
GLY
266
A
ASN
267
n
186
ASN
267
A
GLY
268
n
187
GLY
268
A
ILE
269
n
188
ILE
269
A
TYR
270
n
189
TYR
270
A
ILE
271
n
190
ILE
271
A
ARG
272
n
191
ARG
272
A
VAL
273
n
192
VAL
273
A
ASP
274
n
193
ASP
274
A
ASN
275
n
194
ASN
275
A
SER
276
n
195
SER
276
A
ASN
277
n
196
ASN
277
A
SER
278
n
197
SER
278
A
ALA
279
n
198
ALA
279
A
GLN
280
n
199
GLN
280
A
LYS
281
n
200
LYS
281
A
ALA
282
n
201
ALA
282
A
ILE
283
n
202
ILE
283
A
ASN
284
n
203
ASN
284
A
GLN
285
n
204
GLN
285
A
GLU
286
n
205
GLU
286
A
ILE
287
n
206
ILE
287
A
ASN
288
n
207
ASN
288
A
LYS
289
n
208
LYS
289
A
MSE
290
n
209
MSE
290
A
n
210
291
A
n
211
292
A
n
212
293
A
n
213
294
A
n
214
295
A
n
215
296
A
3.7906
0.8731
0.5917
2.5595
0.3111
1.1509
0.1521
-0.4912
0.1134
0.2449
-0.0834
0.0225
-0.0243
0.0109
-0.0556
0.1470
-0.0070
0.0239
0.1668
0.0044
0.0950
refined
21.6847
8.1918
12.1467
X-RAY DIFFRACTION
1.0499
0.8457
-1.1701
1.5895
-1.2025
1.4704
-0.2594
0.7400
-0.1997
-0.9326
0.0311
0.0428
0.1221
-0.1540
-0.2245
0.3639
-0.0570
-0.0030
0.3113
-0.0051
0.2473
refined
19.3202
8.4461
-1.7648
X-RAY DIFFRACTION
3.5923
-1.1067
-1.1681
3.0087
-0.9719
1.7746
-0.0175
-0.0015
-0.1966
-0.1593
-0.0904
-0.3429
0.0788
0.0536
0.0953
0.1230
0.0048
0.0307
0.1281
0.0258
0.1540
refined
31.9862
-0.5985
7.1193
X-RAY DIFFRACTION
3.9607
-1.4090
1.7149
1.8429
-1.0647
0.9058
0.1889
-0.1340
-0.4224
-0.1591
0.0040
0.1300
0.1295
-0.0420
-0.1881
0.1799
0.0033
0.0128
0.1493
0.0089
0.1567
refined
16.0345
-4.7940
5.1838
X-RAY DIFFRACTION
6.8423
-1.6275
-3.9189
3.2232
1.2994
2.3697
-0.1901
-1.2184
-0.0413
0.6409
-0.0284
-0.1425
-0.4314
0.5644
0.1968
0.5185
-0.1020
-0.0250
0.5818
0.0844
0.3619
refined
25.0789
-1.3382
22.7374
X-RAY DIFFRACTION
X-RAY DIFFRACTION
1
chain 'A' and (resid 89 through 159 )
X-RAY DIFFRACTION
2
chain 'A' and (resid 160 through 171 )
X-RAY DIFFRACTION
3
chain 'A' and (resid 172 through 215 )
X-RAY DIFFRACTION
4
chain 'A' and (resid 216 through 275 )
X-RAY DIFFRACTION
5
chain 'A' and (resid 276 through 290 )
software_defined_assembly
PISA
1
monomeric
A
SER
99
A
OG
SER
18
1_555
A
CA
302
A
C
CA
CA
1_555
A
SER
101
A
OG
SER
20
1_555
95.3
A
SER
99
A
OG
SER
18
1_555
A
CA
302
A
C
CA
CA
1_555
A
THR
170
A
OG1
THR
89
1_555
88.5
A
SER
101
A
OG
SER
20
1_555
A
CA
302
A
C
CA
CA
1_555
A
THR
170
A
OG1
THR
89
1_555
176.2
A
SER
99
A
OG
SER
18
1_555
A
CA
302
A
C
CA
CA
1_555
A
HOH
488
D
O
HOH
1_555
158.7
A
SER
101
A
OG
SER
20
1_555
A
CA
302
A
C
CA
CA
1_555
A
HOH
488
D
O
HOH
1_555
81.0
A
THR
170
A
OG1
THR
89
1_555
A
CA
302
A
C
CA
CA
1_555
A
HOH
488
D
O
HOH
1_555
95.6
A
SER
99
A
OG
SER
18
1_555
A
CA
302
A
C
CA
CA
1_555
A
HOH
533
D
O
HOH
1_555
83.7
A
SER
101
A
OG
SER
20
1_555
A
CA
302
A
C
CA
CA
1_555
A
HOH
533
D
O
HOH
1_555
83.0
A
THR
170
A
OG1
THR
89
1_555
A
CA
302
A
C
CA
CA
1_555
A
HOH
533
D
O
HOH
1_555
97.7
A
HOH
488
D
O
HOH
1_555
A
CA
302
A
C
CA
CA
1_555
A
HOH
533
D
O
HOH
1_555
75.0
A
ASP
198
A
OD1
ASP
117
1_555
A
CA
302
B
C
CA
CA
1_555
A
ASP
97
A
OD2
ASP
16
1_555
96.3
A
ASP
198
A
OD1
ASP
117
1_555
A
CA
302
B
C
CA
CA
1_555
A
THR
170
A
OG1
THR
89
1_555
154.1
A
ASP
97
A
OD2
ASP
16
1_555
A
CA
302
B
C
CA
CA
1_555
A
THR
170
A
OG1
THR
89
1_555
105.8
A
ASP
198
A
OD1
ASP
117
1_555
A
CA
302
B
C
CA
CA
1_555
A
SER
99
A
OG
SER
18
1_555
133.0
A
ASP
97
A
OD2
ASP
16
1_555
A
CA
302
B
C
CA
CA
1_555
A
SER
99
A
OG
SER
18
1_555
81.6
A
THR
170
A
OG1
THR
89
1_555
A
CA
302
B
C
CA
CA
1_555
A
SER
99
A
OG
SER
18
1_555
64.9
A
ASP
198
A
OD1
ASP
117
1_555
A
CA
302
B
C
CA
CA
1_555
A
SER
101
A
OG
SER
20
1_555
76.3
A
ASP
97
A
OD2
ASP
16
1_555
A
CA
302
B
C
CA
CA
1_555
A
SER
101
A
OG
SER
20
1_555
125.3
A
THR
170
A
OG1
THR
89
1_555
A
CA
302
B
C
CA
CA
1_555
A
SER
101
A
OG
SER
20
1_555
100.6
A
SER
99
A
OG
SER
18
1_555
A
CA
302
B
C
CA
CA
1_555
A
SER
101
A
OG
SER
20
1_555
67.7
A
MSE
93
SELENOMETHIONINE
A
MSE
12
MET
A
MSE
102
SELENOMETHIONINE
A
MSE
21
MET
A
MLY
116
N-DIMETHYL-LYSINE
A
MLY
35
LYS
A
MSE
126
SELENOMETHIONINE
A
MSE
45
MET
A
MSE
133
SELENOMETHIONINE
A
MSE
52
MET
A
MSE
155
SELENOMETHIONINE
A
MSE
74
MET
A
MSE
258
SELENOMETHIONINE
A
MSE
177
MET
A
MSE
290
SELENOMETHIONINE
A
MSE
209
MET
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
PHE
141
A
O
PHE
60
A
N
VAL
135
A
N
VAL
54
A
O
ILE
134
A
O
ILE
53
A
N
ILE
94
A
N
ILE
13
A
N
ALA
95
A
N
ALA
14
A
O
VAL
194
A
O
VAL
113
A
N
ILE
193
A
N
ILE
112
A
O
GLN
219
A
O
GLN
138
A
N
GLY
224
A
N
GLY
143
A
O
ILE
271
A
O
ILE
190
A
N
ALA
231
A
N
ALA
150
A
O
THR
252
A
O
THR
171
1
A
CD
GLU
127
A
CD
GLU
46
1
Y
1
A
OE1
GLU
127
A
OE1
GLU
46
1
Y
1
A
OE2
GLU
127
A
OE2
GLU
46
1
Y
1
A
OD1
ASP
139
A
OD1
ASP
58
1
Y
1
A
OD2
ASP
139
A
OD2
ASP
58
1
Y
1
A
CE
LYS
167
A
CE
LYS
86
1
Y
1
A
NZ
LYS
167
A
NZ
LYS
86
1
Y
1
A
CD
GLN
168
A
CD
GLN
87
1
Y
1
A
OE1
GLN
168
A
OE1
GLN
87
1
Y
1
A
NE2
GLN
168
A
NE2
GLN
87
1
Y
1
A
CG
GLU
187
A
CG
GLU
106
1
Y
1
A
CD
GLU
187
A
CD
GLU
106
1
Y
1
A
OE1
GLU
187
A
OE1
GLU
106
1
Y
1
A
OE2
GLU
187
A
OE2
GLU
106
1
Y
1
A
CD
GLU
203
A
CD
GLU
122
1
Y
1
A
OE1
GLU
203
A
OE1
GLU
122
1
Y
1
A
OE2
GLU
203
A
OE2
GLU
122
1
Y
1
A
CD
ARG
245
A
CD
ARG
164
1
Y
1
A
NE
ARG
245
A
NE
ARG
164
1
Y
1
A
CZ
ARG
245
A
CZ
ARG
164
1
Y
1
A
NH1
ARG
245
A
NH1
ARG
164
1
Y
1
A
NH2
ARG
245
A
NH2
ARG
164
1
Y
1
A
CG
LYS
281
A
CG
LYS
200
1
Y
1
A
CD
LYS
281
A
CD
LYS
200
1
Y
1
A
CE
LYS
281
A
CE
LYS
200
1
Y
1
A
NZ
LYS
281
A
NZ
LYS
200
1
Y
1
A
CE
LYS
289
A
CE
LYS
208
1
Y
1
A
NZ
LYS
289
A
NZ
LYS
208
1
Y
1
A
SER
82
A
SER
1
1
Y
1
A
ASN
83
A
ASN
2
1
Y
1
A
ALA
84
A
ALA
3
1
Y
1
A
VAL
85
A
VAL
4
1
Y
1
A
LYS
86
A
LYS
5
1
Y
1
A
ARG
87
A
ARG
6
1
Y
1
A
LYS
88
A
LYS
7
1
Y
1
A
SER
166
A
SER
85
1
Y
1
A
ALA
291
A
ALA
210
1
Y
1
A
LYS
292
A
LYS
211
1
Y
1
A
SER
293
A
SER
212
1
Y
1
A
ASP
294
A
ASP
213
1
Y
1
A
VAL
295
A
VAL
214
1
Y
1
A
GLU
296
A
GLU
215
1
Y
1
A
GLU
127
-128.84
-54.03
1
A
ALA
137
-139.51
-104.44
1
A
GLU
200
-67.74
64.08
1
A
ASP
274
-127.65
-72.12
1
A
ASN
288
-75.16
24.82
0.1977
0.1816
0.1825
1.470
35.688
1472
28955
28955
5.08
98.89
0.14
random
1
1.34
SAD
21.72
0.90
1.11
ML
FLAT BULK SOLVENT MODEL
1.470
35.688
136
1600
4
0
1460
0.006
1557
1.030
2125
13.092
594
0.066
255
0.004
282
0.2860
0.2479
1.5176
115
2283
92.00
0.2484
0.2197
1.5719
106
2463
98.00
0.2156
0.1976
1.6348
129
2492
100.00
0.2291
0.1886
1.7092
118
2517
100.00
0.2354
0.1842
1.7993
156
2465
100.00
0.2107
0.1778
1.9121
134
2493
100.00
0.1896
0.1812
2.0597
138
2526
100.00
0.1863
0.1698
2.2669
140
2516
100.00
0.1984
0.1775
2.5949
143
2530
100.00
0.2440
0.1874
3.2689
142
2563
100.00
0.1630
0.1743
35.6981
151
2635
98.00
1.47
36.0
4JDU
29016
29016
0
-3
0.088
1
43.1
6.4
98.9
0.496
1.47
1.50
2.1
1299
1
3.1
91.5
data collection
SBC-Collect
phasing
SHELXD
phasing
MLPHARE
model building
DM
model building
ARP
model building
WARP
phasing
HKL-3000
refinement
PHENIX
(phenix.refine: 1.8.1_1168)
data reduction
HKL-3000
data scaling
HKL-3000
phasing
DM
Aerotolerance-related membrane protein
The crystal structure of an aerotolerance-related membrane protein from Bacteroides fragilis NCTC 9343 with multiple mutations to serines.
1
N
N
2
N
N
3
N
N
4
N
N
Experimentally unknown. The chain A is predicted to be a monomer.
A
SER
99
A
SER
18
HELX_P
A
ALA
104
A
ALA
23
5
1
6
A
SER
110
A
SER
29
HELX_P
A
GLY
125
A
GLY
44
1
2
16
A
ASP
149
A
ASP
68
HELX_P
A
SER
159
A
SER
78
1
3
11
A
ILE
160
A
ILE
79
HELX_P
A
ILE
165
A
ILE
84
5
4
6
A
ALA
171
A
ALA
90
HELX_P
A
ARG
181
A
ARG
100
1
5
11
A
GLY
205
A
GLY
124
HELX_P
A
SER
216
A
SER
135
1
6
12
A
ASN
255
A
ASN
174
HELX_P
A
GLY
266
A
GLY
185
1
7
12
A
ASN
275
A
ASN
194
HELX_P
A
ASN
288
A
ASN
207
1
8
14
covale
1.328
A
VAL
92
A
C
VAL
11
1_555
A
MSE
93
A
N
MSE
12
1_555
covale
1.326
A
A
MSE
93
A
C
MSE
12
1_555
A
ILE
94
A
N
ILE
13
1_555
covale
1.329
B
A
MSE
93
A
C
MSE
12
1_555
A
ILE
94
A
N
ILE
13
1_555
covale
1.332
A
SER
101
A
C
SER
20
1_555
A
MSE
102
A
N
MSE
21
1_555
covale
1.332
A
MSE
102
A
C
MSE
21
1_555
A
LEU
103
A
N
LEU
22
1_555
covale
1.329
A
ALA
115
A
C
ALA
34
1_555
A
MLY
116
A
N
MLY
35
1_555
covale
1.327
A
MLY
116
A
C
MLY
35
1_555
A
ARG
117
A
N
ARG
36
1_555
covale
1.332
A
GLY
125
A
C
GLY
44
1_555
A
MSE
126
A
N
MSE
45
1_555
covale
1.327
A
MSE
126
A
C
MSE
45
1_555
A
GLU
127
A
N
GLU
46
1_555
covale
1.329
A
GLY
132
A
C
GLY
51
1_555
A
MSE
133
A
N
MSE
52
1_555
covale
1.325
A
MSE
133
A
C
MSE
52
1_555
A
ILE
134
A
N
ILE
53
1_555
covale
1.328
A
LYS
154
A
C
LYS
73
1_555
A
MSE
155
A
N
MSE
74
1_555
covale
1.328
A
MSE
155
A
C
MSE
74
1_555
A
PHE
156
A
N
PHE
75
1_555
covale
1.330
A
ALA
257
A
C
ALA
176
1_555
A
MSE
258
A
N
MSE
177
1_555
covale
1.328
A
MSE
258
A
C
MSE
177
1_555
A
CYS
259
A
N
CYS
178
1_555
covale
1.330
A
LYS
289
A
C
LYS
208
1_555
A
MSE
290
A
N
MSE
209
1_555
metalc
2.292
A
A
SER
99
A
OG
SER
18
1_555
A
CA
302
C
CA
CA
1_555
metalc
2.378
A
A
SER
101
A
OG
SER
20
1_555
A
CA
302
C
CA
CA
1_555
metalc
2.390
A
A
THR
170
A
OG1
THR
89
1_555
A
CA
302
C
CA
CA
1_555
metalc
2.466
A
A
CA
302
C
CA
CA
1_555
A
HOH
488
D
O
HOH
1_555
metalc
2.569
B
A
ASP
198
A
OD1
ASP
117
1_555
A
CA
302
C
CA
CA
1_555
metalc
2.628
B
A
ASP
97
A
OD2
ASP
16
1_555
A
CA
302
C
CA
CA
1_555
metalc
2.646
A
A
CA
302
C
CA
CA
1_555
A
HOH
533
D
O
HOH
1_555
metalc
3.045
B
A
THR
170
A
OG1
THR
89
1_555
A
CA
302
C
CA
CA
1_555
metalc
3.046
B
A
SER
99
A
OG
SER
18
1_555
A
CA
302
C
CA
CA
1_555
metalc
3.147
B
A
SER
101
A
OG
SER
20
1_555
A
CA
302
C
CA
CA
1_555
MEMBRANE PROTEIN
structural genomics, PSI-Biology, protein structure initiative, midwest center for structural genomics, MCSG, MEMBRANE PROTEIN
A
GLN
108
A
GLN
27
1
A
PRO
109
A
PRO
28
-4.81
Q5LCG5_BACFN
UNP
1
85
Q5LCG5
VKRKGVEVMIALDISNSMLAQDVQPSRLEKAKRLISKLVDGMENDKVGMIVFAGDAFTQLPITSDYISAKMFLESISPSL
ISKQGTAIGAAINLAARSFTPQEGVGRAIVVITDGENHEGGAVEAAKEAAKKGIQVNVLGVGLPDGAPIPIEGSNDFRRD
REGNVIVTRLNEAMCQEIAKEGNGIYIRVDNSNSAQKAINQEINKMAKSDVE
85
296
4JDU
85
296
Q5LCG5
A
1
4
215
1
EXPRESSION TAG
SER
82
4JDU
A
Q5LCG5
UNP
1
1
EXPRESSION TAG
ASN
83
4JDU
A
Q5LCG5
UNP
2
1
EXPRESSION TAG
ALA
84
4JDU
A
Q5LCG5
UNP
3
1
GLU
engineered mutation
ALA
208
4JDU
A
Q5LCG5
UNP
208
127
1
GLU
engineered mutation
SER
212
4JDU
A
Q5LCG5
UNP
212
131
1
ALA
engineered mutation
SER
213
4JDU
A
Q5LCG5
UNP
213
132
1
ALA
engineered mutation
SER
214
4JDU
A
Q5LCG5
UNP
214
133
1
LYS
engineered mutation
SER
215
4JDU
A
Q5LCG5
UNP
215
134
1
LYS
engineered mutation
SER
216
4JDU
A
Q5LCG5
UNP
216
135
6
2
anti-parallel
parallel
parallel
parallel
parallel
anti-parallel
A
ALA
140
A
ALA
59
A
THR
147
A
THR
66
A
LYS
130
A
LYS
49
A
PHE
136
A
PHE
55
A
VAL
90
A
VAL
9
A
ASP
97
A
ASP
16
A
GLY
190
A
GLY
109
A
THR
197
A
THR
116
A
GLN
219
A
GLN
138
A
GLY
224
A
GLY
143
A
TYR
270
A
TYR
189
A
ARG
272
A
ARG
191
A
ALA
231
A
ALA
150
A
PRO
232
A
PRO
151
A
VAL
251
A
VAL
170
A
THR
252
A
THR
171
BINDING SITE FOR RESIDUE FMT A 301
Software
4
BINDING SITE FOR RESIDUE CA A 302
Software
7
A
PHE
156
A
PHE
75
4
4_455
A
SER
159
A
SER
78
4
4_455
A
ASP
240
A
ASP
159
4
1_555
A
HOH
506
D
HOH
4
1_555
A
ASP
97
A
ASP
16
7
1_555
A
SER
99
A
SER
18
7
1_555
A
SER
101
A
SER
20
7
1_555
A
THR
170
A
THR
89
7
1_555
A
ASP
198
A
ASP
117
7
1_555
A
HOH
488
D
HOH
7
1_555
A
HOH
533
D
HOH
7
1_555
19
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