0.021151
0.000000
0.000000
0.000000
0.021151
0.000000
0.000000
0.000000
0.003425
0.00000
0.00000
0.00000
Miller, R.M.
Paavilainen, V.O.
Krishnan, S.
Serafimova, I.M.
Taunton, J.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
47.280
47.280
291.970
C11 H10 N4 O
214.223
(2S)-2-cyano-3-(1H-indazol-5-yl)propanamide
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Na 1
22.990
SODIUM ION
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
J.Am.Chem.Soc.
JACSAT
0004
0002-7863
135
5298
5301
10.1021/ja401221b
23540679
Electrophilic fragment-based design of reversible covalent kinase inhibitors.
2013
100
1
CCD
2009-08-18
ADSC QUANTUM 315r
Double crystal, Si(111)
SINGLE WAVELENGTH
M
x-ray
1
0.999974
1.0
8.2.1
ALS
0.999974
SYNCHROTRON
ALS BEAMLINE 8.2.1
40067.551
Ribosomal protein S6 kinase alpha-3
2.7.11.1
1
man
polymer
214.223
(2S)-2-cyano-3-(1H-indazol-5-yl)propanamide
1
syn
non-polymer
22.990
SODIUM ION
1
syn
non-polymer
18.015
water
42
nat
water
S6K-alpha-3, 90 kDa ribosomal protein S6 kinase 3, p90-RSK 3, p90RSK3, Insulin-stimulated protein kinase 1, ISPK-1, MAP kinase-activated protein kinase 1b, MAPK-activated protein kinase 1b, MAPKAP kinase 1b, MAPKAPK-1b, Ribosomal S6 kinase 2, RSK-2, pp90RSK2
no
no
AHHHHHHVDDDDKMQTVGVHSIVQQLHRNSIQFTDGYEVKEDIGVGSYSVCKRCIHKATNMEFAVKIIDKSKRDPTEEIE
ILLRYGQHPNIITLKDVYDDGKYVYVVTELMKGGELLDKILRQKFFSEREASAVLFTITKTVEYLHAQGVVHRDLKPSNI
LYVDESGNPESIRICDFGFAKQLRAENGLLMTPCYTANFVAPEVLERQGYDAACDIWSLGVLLYTMLTGYTPFANGPDDT
PEEILARIGSGKFSLSGGYWNSVSDTAKDLVSKMLHVDPHQRLTAALVLRHPWIVHWDQLPQYQLNRQDAPHLVKGAMAA
TYSALNRNQSPVLEPVGRSTLAQRRGIKKITSTAL
AHHHHHHVDDDDKMQTVGVHSIVQQLHRNSIQFTDGYEVKEDIGVGSYSVCKRCIHKATNMEFAVKIIDKSKRDPTEEIE
ILLRYGQHPNIITLKDVYDDGKYVYVVTELMKGGELLDKILRQKFFSEREASAVLFTITKTVEYLHAQGVVHRDLKPSNI
LYVDESGNPESIRICDFGFAKQLRAENGLLMTPCYTANFVAPEVLERQGYDAACDIWSLGVLLYTMLTGYTPFANGPDDT
PEEILARIGSGKFSLSGGYWNSVSDTAKDLVSKMLHVDPHQRLTAALVLRHPWIVHWDQLPQYQLNRQDAPHLVKGAMAA
TYSALNRNQSPVLEPVGRSTLAQRRGIKKITSTAL
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
sample
RPS6KA3, ISPK1, MAPKAPK1B, RSK2
9606
Homo sapiens
562
Escherichia coli
1
2.04
39.65
VAPOR DIFFUSION, HANGING DROP
7.0
100 mM HEPES, 50 mM Ammonium Sulfate, 7.5% PEG 3350, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
298
repository
Initial release
Database references
Database references
1
0
2013-04-10
1
1
2013-04-17
1
2
2013-04-24
RCSB
Y
RCSB
2013-02-28
REL
REL
1LB
(2S)-2-cyano-3-(1H-indazol-5-yl)propanamide
NA
SODIUM ION
HOH
water
1LB
801
2
1LB
1LB
801
A
NA
1
3
NA
NA
802
A
HOH
901
4
HOH
HOH
901
A
HOH
903
4
HOH
HOH
902
A
HOH
905
4
HOH
HOH
903
A
HOH
907
4
HOH
HOH
904
A
HOH
908
4
HOH
HOH
905
A
HOH
910
4
HOH
HOH
906
A
HOH
911
4
HOH
HOH
907
A
HOH
912
4
HOH
HOH
908
A
HOH
913
4
HOH
HOH
909
A
HOH
914
4
HOH
HOH
910
A
HOH
915
4
HOH
HOH
911
A
HOH
916
4
HOH
HOH
912
A
HOH
917
4
HOH
HOH
913
A
HOH
918
4
HOH
HOH
914
A
HOH
919
4
HOH
HOH
915
A
HOH
920
4
HOH
HOH
916
A
HOH
922
4
HOH
HOH
917
A
HOH
923
4
HOH
HOH
918
A
HOH
924
4
HOH
HOH
919
A
HOH
925
4
HOH
HOH
920
A
HOH
927
4
HOH
HOH
921
A
HOH
928
4
HOH
HOH
922
A
HOH
929
4
HOH
HOH
923
A
HOH
930
4
HOH
HOH
924
A
HOH
931
4
HOH
HOH
925
A
HOH
932
4
HOH
HOH
926
A
HOH
933
4
HOH
HOH
927
A
HOH
934
4
HOH
HOH
928
A
HOH
936
4
HOH
HOH
929
A
HOH
937
4
HOH
HOH
930
A
HOH
939
4
HOH
HOH
931
A
HOH
940
4
HOH
HOH
932
A
HOH
941
4
HOH
HOH
933
A
HOH
943
4
HOH
HOH
934
A
HOH
944
4
HOH
HOH
935
A
HOH
945
4
HOH
HOH
936
A
HOH
946
4
HOH
HOH
937
A
HOH
947
4
HOH
HOH
938
A
HOH
948
4
HOH
HOH
939
A
HOH
949
4
HOH
HOH
940
A
HOH
950
4
HOH
HOH
941
A
HOH
951
4
HOH
HOH
942
A
n
1
386
A
n
2
387
A
n
3
388
A
n
4
389
A
n
5
390
A
n
6
391
A
n
7
392
A
n
8
393
A
n
9
394
A
n
10
395
A
n
11
396
A
n
12
397
A
n
13
398
A
n
14
399
A
n
15
400
A
n
16
401
A
n
17
402
A
n
18
403
A
n
19
404
A
n
20
405
A
SER
406
n
21
SER
406
A
ILE
407
n
22
ILE
407
A
VAL
408
n
23
VAL
408
A
GLN
409
n
24
GLN
409
A
GLN
410
n
25
GLN
410
A
LEU
411
n
26
LEU
411
A
HIS
412
n
27
HIS
412
A
ARG
413
n
28
ARG
413
A
ASN
414
n
29
ASN
414
A
SER
415
n
30
SER
415
A
ILE
416
n
31
ILE
416
A
GLN
417
n
32
GLN
417
A
PHE
418
n
33
PHE
418
A
THR
419
n
34
THR
419
A
ASP
420
n
35
ASP
420
A
GLY
421
n
36
GLY
421
A
TYR
422
n
37
TYR
422
A
GLU
423
n
38
GLU
423
A
VAL
424
n
39
VAL
424
A
LYS
425
n
40
LYS
425
A
GLU
426
n
41
GLU
426
A
ASP
427
n
42
ASP
427
A
ILE
428
n
43
ILE
428
A
n
44
429
A
n
45
430
A
n
46
431
A
n
47
432
A
n
48
433
A
SER
434
n
49
SER
434
A
VAL
435
n
50
VAL
435
A
CYS
436
n
51
CYS
436
A
LYS
437
n
52
LYS
437
A
ARG
438
n
53
ARG
438
A
CYS
439
n
54
CYS
439
A
ILE
440
n
55
ILE
440
A
HIS
441
n
56
HIS
441
A
LYS
442
n
57
LYS
442
A
ALA
443
n
58
ALA
443
A
THR
444
n
59
THR
444
A
ASN
445
n
60
ASN
445
A
MET
446
n
61
MET
446
A
GLU
447
n
62
GLU
447
A
PHE
448
n
63
PHE
448
A
ALA
449
n
64
ALA
449
A
VAL
450
n
65
VAL
450
A
LYS
451
n
66
LYS
451
A
ILE
452
n
67
ILE
452
A
ILE
453
n
68
ILE
453
A
ASP
454
n
69
ASP
454
A
LYS
455
n
70
LYS
455
A
SER
456
n
71
SER
456
A
LYS
457
n
72
LYS
457
A
ARG
458
n
73
ARG
458
A
ASP
459
n
74
ASP
459
A
PRO
460
n
75
PRO
460
A
THR
461
n
76
THR
461
A
GLU
462
n
77
GLU
462
A
GLU
463
n
78
GLU
463
A
ILE
464
n
79
ILE
464
A
GLU
465
n
80
GLU
465
A
ILE
466
n
81
ILE
466
A
LEU
467
n
82
LEU
467
A
LEU
468
n
83
LEU
468
A
ARG
469
n
84
ARG
469
A
TYR
470
n
85
TYR
470
A
GLY
471
n
86
GLY
471
A
GLN
472
n
87
GLN
472
A
HIS
473
n
88
HIS
473
A
PRO
474
n
89
PRO
474
A
ASN
475
n
90
ASN
475
A
ILE
476
n
91
ILE
476
A
ILE
477
n
92
ILE
477
A
THR
478
n
93
THR
478
A
LEU
479
n
94
LEU
479
A
LYS
480
n
95
LYS
480
A
ASP
481
n
96
ASP
481
A
VAL
482
n
97
VAL
482
A
TYR
483
n
98
TYR
483
A
ASP
484
n
99
ASP
484
A
ASP
485
n
100
ASP
485
A
GLY
486
n
101
GLY
486
A
LYS
487
n
102
LYS
487
A
TYR
488
n
103
TYR
488
A
VAL
489
n
104
VAL
489
A
TYR
490
n
105
TYR
490
A
VAL
491
n
106
VAL
491
A
VAL
492
n
107
VAL
492
A
THR
493
n
108
THR
493
A
GLU
494
n
109
GLU
494
A
LEU
495
n
110
LEU
495
A
MET
496
n
111
MET
496
A
LYS
497
n
112
LYS
497
A
GLY
498
n
113
GLY
498
A
GLY
499
n
114
GLY
499
A
GLU
500
n
115
GLU
500
A
LEU
501
n
116
LEU
501
A
LEU
502
n
117
LEU
502
A
ASP
503
n
118
ASP
503
A
LYS
504
n
119
LYS
504
A
ILE
505
n
120
ILE
505
A
LEU
506
n
121
LEU
506
A
ARG
507
n
122
ARG
507
A
GLN
508
n
123
GLN
508
A
LYS
509
n
124
LYS
509
A
PHE
510
n
125
PHE
510
A
PHE
511
n
126
PHE
511
A
SER
512
n
127
SER
512
A
GLU
513
n
128
GLU
513
A
ARG
514
n
129
ARG
514
A
GLU
515
n
130
GLU
515
A
ALA
516
n
131
ALA
516
A
SER
517
n
132
SER
517
A
ALA
518
n
133
ALA
518
A
VAL
519
n
134
VAL
519
A
LEU
520
n
135
LEU
520
A
PHE
521
n
136
PHE
521
A
THR
522
n
137
THR
522
A
ILE
523
n
138
ILE
523
A
THR
524
n
139
THR
524
A
LYS
525
n
140
LYS
525
A
THR
526
n
141
THR
526
A
VAL
527
n
142
VAL
527
A
GLU
528
n
143
GLU
528
A
TYR
529
n
144
TYR
529
A
LEU
530
n
145
LEU
530
A
HIS
531
n
146
HIS
531
A
ALA
532
n
147
ALA
532
A
GLN
533
n
148
GLN
533
A
GLY
534
n
149
GLY
534
A
VAL
535
n
150
VAL
535
A
VAL
536
n
151
VAL
536
A
HIS
537
n
152
HIS
537
A
ARG
538
n
153
ARG
538
A
ASP
539
n
154
ASP
539
A
LEU
540
n
155
LEU
540
A
LYS
541
n
156
LYS
541
A
PRO
542
n
157
PRO
542
A
SER
543
n
158
SER
543
A
ASN
544
n
159
ASN
544
A
ILE
545
n
160
ILE
545
A
LEU
546
n
161
LEU
546
A
TYR
547
n
162
TYR
547
A
VAL
548
n
163
VAL
548
A
ASP
549
n
164
ASP
549
A
GLU
550
n
165
GLU
550
A
SER
551
n
166
SER
551
A
GLY
552
n
167
GLY
552
A
ASN
553
n
168
ASN
553
A
PRO
554
n
169
PRO
554
A
GLU
555
n
170
GLU
555
A
SER
556
n
171
SER
556
A
ILE
557
n
172
ILE
557
A
ARG
558
n
173
ARG
558
A
ILE
559
n
174
ILE
559
A
CYS
560
n
175
CYS
560
A
ASP
561
n
176
ASP
561
A
PHE
562
n
177
PHE
562
A
GLY
563
n
178
GLY
563
A
PHE
564
n
179
PHE
564
A
ALA
565
n
180
ALA
565
A
LYS
566
n
181
LYS
566
A
GLN
567
n
182
GLN
567
A
LEU
568
n
183
LEU
568
A
ARG
569
n
184
ARG
569
A
ALA
570
n
185
ALA
570
A
GLU
571
n
186
GLU
571
A
ASN
572
n
187
ASN
572
A
GLY
573
n
188
GLY
573
A
LEU
574
n
189
LEU
574
A
LEU
575
n
190
LEU
575
A
MET
576
n
191
MET
576
A
THR
577
n
192
THR
577
A
PRO
578
n
193
PRO
578
A
CYS
579
n
194
CYS
579
A
TYR
580
n
195
TYR
580
A
THR
581
n
196
THR
581
A
ALA
582
n
197
ALA
582
A
ASN
583
n
198
ASN
583
A
PHE
584
n
199
PHE
584
A
VAL
585
n
200
VAL
585
A
ALA
586
n
201
ALA
586
A
PRO
587
n
202
PRO
587
A
GLU
588
n
203
GLU
588
A
VAL
589
n
204
VAL
589
A
LEU
590
n
205
LEU
590
A
GLU
591
n
206
GLU
591
A
ARG
592
n
207
ARG
592
A
GLN
593
n
208
GLN
593
A
GLY
594
n
209
GLY
594
A
TYR
595
n
210
TYR
595
A
ASP
596
n
211
ASP
596
A
ALA
597
n
212
ALA
597
A
ALA
598
n
213
ALA
598
A
CYS
599
n
214
CYS
599
A
ASP
600
n
215
ASP
600
A
ILE
601
n
216
ILE
601
A
TRP
602
n
217
TRP
602
A
SER
603
n
218
SER
603
A
LEU
604
n
219
LEU
604
A
GLY
605
n
220
GLY
605
A
VAL
606
n
221
VAL
606
A
LEU
607
n
222
LEU
607
A
LEU
608
n
223
LEU
608
A
TYR
609
n
224
TYR
609
A
THR
610
n
225
THR
610
A
MET
611
n
226
MET
611
A
LEU
612
n
227
LEU
612
A
THR
613
n
228
THR
613
A
GLY
614
n
229
GLY
614
A
TYR
615
n
230
TYR
615
A
THR
616
n
231
THR
616
A
PRO
617
n
232
PRO
617
A
PHE
618
n
233
PHE
618
A
ALA
619
n
234
ALA
619
A
ASN
620
n
235
ASN
620
A
GLY
621
n
236
GLY
621
A
PRO
622
n
237
PRO
622
A
ASP
623
n
238
ASP
623
A
ASP
624
n
239
ASP
624
A
THR
625
n
240
THR
625
A
PRO
626
n
241
PRO
626
A
GLU
627
n
242
GLU
627
A
GLU
628
n
243
GLU
628
A
ILE
629
n
244
ILE
629
A
LEU
630
n
245
LEU
630
A
ALA
631
n
246
ALA
631
A
ARG
632
n
247
ARG
632
A
ILE
633
n
248
ILE
633
A
GLY
634
n
249
GLY
634
A
SER
635
n
250
SER
635
A
GLY
636
n
251
GLY
636
A
LYS
637
n
252
LYS
637
A
PHE
638
n
253
PHE
638
A
SER
639
n
254
SER
639
A
LEU
640
n
255
LEU
640
A
SER
641
n
256
SER
641
A
GLY
642
n
257
GLY
642
A
GLY
643
n
258
GLY
643
A
TYR
644
n
259
TYR
644
A
TRP
645
n
260
TRP
645
A
ASN
646
n
261
ASN
646
A
SER
647
n
262
SER
647
A
VAL
648
n
263
VAL
648
A
SER
649
n
264
SER
649
A
ASP
650
n
265
ASP
650
A
THR
651
n
266
THR
651
A
ALA
652
n
267
ALA
652
A
LYS
653
n
268
LYS
653
A
ASP
654
n
269
ASP
654
A
LEU
655
n
270
LEU
655
A
VAL
656
n
271
VAL
656
A
SER
657
n
272
SER
657
A
LYS
658
n
273
LYS
658
A
MET
659
n
274
MET
659
A
LEU
660
n
275
LEU
660
A
HIS
661
n
276
HIS
661
A
VAL
662
n
277
VAL
662
A
ASP
663
n
278
ASP
663
A
PRO
664
n
279
PRO
664
A
HIS
665
n
280
HIS
665
A
GLN
666
n
281
GLN
666
A
ARG
667
n
282
ARG
667
A
LEU
668
n
283
LEU
668
A
THR
669
n
284
THR
669
A
ALA
670
n
285
ALA
670
A
ALA
671
n
286
ALA
671
A
LEU
672
n
287
LEU
672
A
VAL
673
n
288
VAL
673
A
LEU
674
n
289
LEU
674
A
ARG
675
n
290
ARG
675
A
HIS
676
n
291
HIS
676
A
PRO
677
n
292
PRO
677
A
TRP
678
n
293
TRP
678
A
ILE
679
n
294
ILE
679
A
VAL
680
n
295
VAL
680
A
HIS
681
n
296
HIS
681
A
TRP
682
n
297
TRP
682
A
ASP
683
n
298
ASP
683
A
GLN
684
n
299
GLN
684
A
LEU
685
n
300
LEU
685
A
PRO
686
n
301
PRO
686
A
GLN
687
n
302
GLN
687
A
TYR
688
n
303
TYR
688
A
GLN
689
n
304
GLN
689
A
LEU
690
n
305
LEU
690
A
ASN
691
n
306
ASN
691
A
ARG
692
n
307
ARG
692
A
GLN
693
n
308
GLN
693
A
ASP
694
n
309
ASP
694
A
ALA
695
n
310
ALA
695
A
PRO
696
n
311
PRO
696
A
HIS
697
n
312
HIS
697
A
LEU
698
n
313
LEU
698
A
VAL
699
n
314
VAL
699
A
LYS
700
n
315
LYS
700
A
GLY
701
n
316
GLY
701
A
ALA
702
n
317
ALA
702
A
MET
703
n
318
MET
703
A
ALA
704
n
319
ALA
704
A
ALA
705
n
320
ALA
705
A
THR
706
n
321
THR
706
A
TYR
707
n
322
TYR
707
A
SER
708
n
323
SER
708
A
ALA
709
n
324
ALA
709
A
LEU
710
n
325
LEU
710
A
ASN
711
n
326
ASN
711
A
ARG
712
n
327
ARG
712
A
n
328
713
A
n
329
714
A
n
330
715
A
n
331
716
A
n
332
717
A
n
333
718
A
n
334
719
A
n
335
720
A
n
336
721
A
n
337
722
A
n
338
723
A
n
339
724
A
n
340
725
A
n
341
726
A
n
342
727
A
n
343
728
A
n
344
729
A
n
345
730
A
n
346
731
A
n
347
732
A
n
348
733
A
n
349
734
A
n
350
735
A
n
351
736
A
n
352
737
A
n
353
738
A
n
354
739
A
n
355
740
A
4.9769
0.6294
0.0691
6.0684
-0.9045
7.8275
-0.0085
0.0466
-0.6308
0.0567
0.4137
0.5115
-0.1955
-1.5951
-0.3290
0.3055
-0.1590
0.1021
0.5527
0.0343
0.3697
refined
9.2391
-34.7868
12.5373
X-RAY DIFFRACTION
1.7664
1.7361
-0.4471
3.1822
0.9468
3.8431
0.1069
0.1967
-0.0374
-0.4158
-0.0532
0.0428
-0.4660
-0.4064
-0.0121
0.4288
0.2385
0.0285
0.3235
-0.0081
0.3446
refined
22.2105
-21.8443
16.4952
X-RAY DIFFRACTION
3.9169
-0.8006
-0.7453
3.1883
0.1542
2.5296
-0.0147
-0.2486
0.4855
0.1339
0.0664
-0.1201
-0.8182
0.2018
-0.1215
0.7264
-0.0810
0.1101
0.1936
-0.0253
0.4167
refined
27.0133
-10.4746
29.3358
X-RAY DIFFRACTION
X-RAY DIFFRACTION
1
chain 'A' and (resseq 406:470)
X-RAY DIFFRACTION
2
chain 'A' and (resseq 471:613)
X-RAY DIFFRACTION
3
chain 'A' and (resseq 614:712)
software_defined_assembly
PISA
1
monomeric
A
ILE
476
A
O
ILE
91
1_555
A
NA
802
C
NA
NA
1_555
A
HIS
473
A
O
HIS
88
1_555
108.5
A
ILE
476
A
O
ILE
91
1_555
A
NA
802
C
NA
NA
1_555
A
HOH
929
D
O
HOH
1_555
106.3
A
HIS
473
A
O
HIS
88
1_555
A
NA
802
C
NA
NA
1_555
A
HOH
929
D
O
HOH
1_555
103.7
A
ILE
476
A
O
ILE
91
1_555
A
NA
802
C
NA
NA
1_555
A
THR
478
A
OG1
THR
93
1_555
98.3
A
HIS
473
A
O
HIS
88
1_555
A
NA
802
C
NA
NA
1_555
A
THR
478
A
OG1
THR
93
1_555
151.5
A
HOH
929
D
O
HOH
1_555
A
NA
802
C
NA
NA
1_555
A
THR
478
A
OG1
THR
93
1_555
58.3
A
ILE
476
A
O
ILE
91
1_555
A
NA
802
C
NA
NA
1_555
A
GLY
471
A
O
GLY
86
1_555
112.5
A
HIS
473
A
O
HIS
88
1_555
A
NA
802
C
NA
NA
1_555
A
GLY
471
A
O
GLY
86
1_555
98.9
A
HOH
929
D
O
HOH
1_555
A
NA
802
C
NA
NA
1_555
A
GLY
471
A
O
GLY
86
1_555
125.3
A
THR
478
A
OG1
THR
93
1_555
A
NA
802
C
NA
NA
1_555
A
GLY
471
A
O
GLY
86
1_555
78.9
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
GLU
426
A
N
GLU
41
A
O
ARG
438
A
O
ARG
53
A
N
HIS
441
A
N
HIS
56
A
O
MET
446
A
O
MET
61
A
N
ALA
449
A
N
ALA
64
A
O
THR
493
A
O
THR
108
A
O
TYR
490
A
O
TYR
105
A
N
TYR
483
A
N
TYR
98
A
N
VAL
536
A
N
VAL
151
A
O
LYS
566
A
O
LYS
181
A
N
LEU
546
A
N
LEU
161
A
O
ARG
558
A
O
ARG
173
1
A
OG
SER
406
A
OG
SER
21
1
Y
1
A
CG1
ILE
407
A
CG1
ILE
22
1
Y
1
A
CG2
ILE
407
A
CG2
ILE
22
1
Y
1
A
CD1
ILE
407
A
CD1
ILE
22
1
Y
1
A
CG
GLN
410
A
CG
GLN
25
1
Y
1
A
CD
GLN
410
A
CD
GLN
25
1
Y
1
A
OE1
GLN
410
A
OE1
GLN
25
1
Y
1
A
NE2
GLN
410
A
NE2
GLN
25
1
Y
1
A
CB
HIS
412
A
CB
HIS
27
1
Y
1
A
CG
HIS
412
A
CG
HIS
27
1
Y
1
A
ND1
HIS
412
A
ND1
HIS
27
1
Y
1
A
CD2
HIS
412
A
CD2
HIS
27
1
Y
1
A
CE1
HIS
412
A
CE1
HIS
27
1
Y
1
A
NE2
HIS
412
A
NE2
HIS
27
1
Y
1
A
CB
ARG
413
A
CB
ARG
28
1
Y
1
A
CG
ARG
413
A
CG
ARG
28
1
Y
1
A
CD
ARG
413
A
CD
ARG
28
1
Y
1
A
NE
ARG
413
A
NE
ARG
28
1
Y
1
A
CZ
ARG
413
A
CZ
ARG
28
1
Y
1
A
NH1
ARG
413
A
NH1
ARG
28
1
Y
1
A
NH2
ARG
413
A
NH2
ARG
28
1
Y
1
A
CG1
ILE
416
A
CG1
ILE
31
1
Y
1
A
CG2
ILE
416
A
CG2
ILE
31
1
Y
1
A
CD1
ILE
416
A
CD1
ILE
31
1
Y
1
A
CG
ARG
458
A
CG
ARG
73
1
Y
1
A
CD
ARG
458
A
CD
ARG
73
1
Y
1
A
NE
ARG
458
A
NE
ARG
73
1
Y
1
A
CZ
ARG
458
A
CZ
ARG
73
1
Y
1
A
NH1
ARG
458
A
NH1
ARG
73
1
Y
1
A
NH2
ARG
458
A
NH2
ARG
73
1
Y
1
A
CG
GLU
591
A
CG
GLU
206
1
Y
1
A
CD
GLU
591
A
CD
GLU
206
1
Y
1
A
OE1
GLU
591
A
OE1
GLU
206
1
Y
1
A
OE2
GLU
591
A
OE2
GLU
206
1
Y
1
A
OG
SER
635
A
OG
SER
250
1
Y
1
A
CG
LYS
637
A
CG
LYS
252
1
Y
1
A
CD
LYS
637
A
CD
LYS
252
1
Y
1
A
CE
LYS
637
A
CE
LYS
252
1
Y
1
A
NZ
LYS
637
A
NZ
LYS
252
1
Y
1
A
CG
ARG
712
A
CG
ARG
327
1
Y
1
A
CD
ARG
712
A
CD
ARG
327
1
Y
1
A
NE
ARG
712
A
NE
ARG
327
1
Y
1
A
CZ
ARG
712
A
CZ
ARG
327
1
Y
1
A
NH1
ARG
712
A
NH1
ARG
327
1
Y
1
A
NH2
ARG
712
A
NH2
ARG
327
1
Y
1
A
ALA
386
A
ALA
1
1
Y
1
A
HIS
387
A
HIS
2
1
Y
1
A
HIS
388
A
HIS
3
1
Y
1
A
HIS
389
A
HIS
4
1
Y
1
A
HIS
390
A
HIS
5
1
Y
1
A
HIS
391
A
HIS
6
1
Y
1
A
HIS
392
A
HIS
7
1
Y
1
A
VAL
393
A
VAL
8
1
Y
1
A
ASP
394
A
ASP
9
1
Y
1
A
ASP
395
A
ASP
10
1
Y
1
A
ASP
396
A
ASP
11
1
Y
1
A
ASP
397
A
ASP
12
1
Y
1
A
LYS
398
A
LYS
13
1
Y
1
A
MET
399
A
MET
14
1
Y
1
A
GLN
400
A
GLN
15
1
Y
1
A
THR
401
A
THR
16
1
Y
1
A
VAL
402
A
VAL
17
1
Y
1
A
GLY
403
A
GLY
18
1
Y
1
A
VAL
404
A
VAL
19
1
Y
1
A
HIS
405
A
HIS
20
1
Y
1
A
GLY
429
A
GLY
44
1
Y
1
A
VAL
430
A
VAL
45
1
Y
1
A
GLY
431
A
GLY
46
1
Y
1
A
SER
432
A
SER
47
1
Y
1
A
TYR
433
A
TYR
48
1
Y
1
A
ASN
713
A
ASN
328
1
Y
1
A
GLN
714
A
GLN
329
1
Y
1
A
SER
715
A
SER
330
1
Y
1
A
PRO
716
A
PRO
331
1
Y
1
A
VAL
717
A
VAL
332
1
Y
1
A
LEU
718
A
LEU
333
1
Y
1
A
GLU
719
A
GLU
334
1
Y
1
A
PRO
720
A
PRO
335
1
Y
1
A
VAL
721
A
VAL
336
1
Y
1
A
GLY
722
A
GLY
337
1
Y
1
A
ARG
723
A
ARG
338
1
Y
1
A
SER
724
A
SER
339
1
Y
1
A
THR
725
A
THR
340
1
Y
1
A
LEU
726
A
LEU
341
1
Y
1
A
ALA
727
A
ALA
342
1
Y
1
A
GLN
728
A
GLN
343
1
Y
1
A
ARG
729
A
ARG
344
1
Y
1
A
ARG
730
A
ARG
345
1
Y
1
A
GLY
731
A
GLY
346
1
Y
1
A
ILE
732
A
ILE
347
1
Y
1
A
LYS
733
A
LYS
348
1
Y
1
A
LYS
734
A
LYS
349
1
Y
1
A
ILE
735
A
ILE
350
1
Y
1
A
THR
736
A
THR
351
1
Y
1
A
SER
737
A
SER
352
1
Y
1
A
THR
738
A
THR
353
1
Y
1
A
ALA
739
A
ALA
354
1
Y
1
A
LEU
740
A
LEU
355
1
Y
1
A
A
OE2
H
GLU
GLN
462
567
1.56
1
A
A
OG
OE1
SER
GLU
512
515
2.15
1
A
A
O
O
ASN
HOH
691
931
2.16
1
A
A
OD1
NH1
ASP
ARG
503
507
2.16
1
A
A
OE1
O
GLN
HOH
409
925
2.19
1
A
HIS
412
49.93
-143.00
1
A
LYS
457
-124.82
-62.83
1
A
ASP
459
63.06
74.57
1
A
ASP
481
175.64
162.30
1
A
ARG
538
70.87
-14.77
1
A
ASP
561
59.04
73.34
2.3931
0.0000
-0.0000
2.3931
-0.0000
-4.7862
0.2986
0.2521
0.2543
2.600
46.672
537
11115
11112
4.83
99.97
1.000
1.000
0.86
1
1.35
MOLECULAR REPLACEMENT
31.39
0.65
0.80
ML
FLAT BULK SOLVENT MODEL
40.689
0.378
2.600
46.672
42
2423
17
0
2364
0.013
2439
0.660
3327
10.058
879
0.043
370
0.003
424
0.4417
0.3668
2.8617
137
2535
100.00
0.3525
0.3015
3.2757
123
2579
100.00
0.3110
0.2446
4.1266
144
2614
100.00
0.2442
0.2177
46.6795
133
2847
100.00
2.6
48.66
4JG6
11112
3.0
3.0
1
99.9
2.60
2.76
1
99.7
data scaling
Wolfgang Kabsch
http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html
XSCALE
package
refinement
Paul D. Adams
PDAdams@lbl.gov
C++
http://www.phenix-online.org/
PHENIX
package
1.7.1_743
data extraction
PDB
deposit@deposit.rcsb.org
April 22, 2011
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.11
data collection
Blu-Ice
data reduction
XDS
phasing
PHENIX
Ribosomal protein S6 kinase alpha-3 (E.C.2.7.11.1)
RSK2 CTD bound to 2-cyano-3-(1H-indazol-5-yl)acrylamide
1
N
N
2
N
N
3
N
N
4
N
N
A
GLN
417
A
GLN
32
HELX_P
A
GLY
421
A
GLY
36
1
1
5
A
PRO
460
A
PRO
75
HELX_P
A
GLY
471
A
GLY
86
1
2
12
A
GLU
500
A
GLU
115
HELX_P
A
ARG
507
A
ARG
122
1
3
8
A
SER
512
A
SER
127
HELX_P
A
GLN
533
A
GLN
148
1
4
22
A
LYS
541
A
LYS
156
HELX_P
A
SER
543
A
SER
158
5
5
3
A
ASN
553
A
ASN
168
HELX_P
A
GLU
555
A
GLU
170
5
6
3
A
ALA
586
A
ALA
201
HELX_P
A
GLY
614
A
GLY
229
1
7
29
A
THR
625
A
THR
240
HELX_P
A
GLY
634
A
GLY
249
1
8
10
A
GLY
642
A
GLY
257
HELX_P
A
ASN
646
A
ASN
261
5
9
5
A
SER
649
A
SER
264
HELX_P
A
LEU
660
A
LEU
275
1
10
12
A
ASP
663
A
ASP
278
HELX_P
A
ARG
667
A
ARG
282
5
11
5
A
THR
669
A
THR
284
HELX_P
A
ARG
675
A
ARG
290
1
12
7
A
HIS
676
A
HIS
291
HELX_P
A
HIS
681
A
HIS
296
1
13
6
A
ALA
695
A
ALA
310
HELX_P
A
ASN
711
A
ASN
326
1
14
17
covale
1.830
A
CYS
436
A
SG
CYS
51
1_555
A
1LB
801
B
C07
1LB
1_555
metalc
2.003
A
ILE
476
A
O
ILE
91
1_555
A
NA
802
C
NA
NA
1_555
metalc
2.005
A
HIS
473
A
O
HIS
88
1_555
A
NA
802
C
NA
NA
1_555
metalc
2.418
A
NA
802
C
NA
NA
1_555
A
HOH
929
D
O
HOH
1_555
metalc
2.491
A
THR
478
A
OG1
THR
93
1_555
A
NA
802
C
NA
NA
1_555
metalc
2.527
A
GLY
471
A
O
GLY
86
1_555
A
NA
802
C
NA
NA
1_555
TRANSFERASE/TRANSFERASE INHIBITOR
Protein Kinase, Phosphorylation, Covalent Inhibitor, TRANSFERASE-TRANSFERASE INHIBITOR complex
KS6A3_HUMAN
UNP
1
399
P51812
MQTVGVHSIVQQLHRNSIQFTDGYEVKEDIGVGSYSVCKRCIHKATNMEFAVKIIDKSKRDPTEEIEILLRYGQHPNIIT
LKDVYDDGKYVYVVTELMKGGELLDKILRQKFFSEREASAVLFTITKTVEYLHAQGVVHRDLKPSNILYVDESGNPESIR
ICDFGFAKQLRAENGLLMTPCYTANFVAPEVLKRQGYDAACDIWSLGVLLYTMLTGYTPFANGPDDTPEEILARIGSGKF
SLSGGYWNSVSDTAKDLVSKMLHVDPHQRLTAALVLRHPWIVHWDQLPQYQLNRQDAPHLVKGAMAATYSALNRNQSPVL
EPVGRSTLAQRRGIKKITSTAL
399
740
4JG6
399
740
P51812
A
1
14
355
1
EXPRESSION TAG
ALA
386
4JG6
A
P51812
UNP
1
1
EXPRESSION TAG
HIS
387
4JG6
A
P51812
UNP
2
1
EXPRESSION TAG
HIS
388
4JG6
A
P51812
UNP
3
1
EXPRESSION TAG
HIS
389
4JG6
A
P51812
UNP
4
1
EXPRESSION TAG
HIS
390
4JG6
A
P51812
UNP
5
1
EXPRESSION TAG
HIS
391
4JG6
A
P51812
UNP
6
1
EXPRESSION TAG
HIS
392
4JG6
A
P51812
UNP
7
1
EXPRESSION TAG
VAL
393
4JG6
A
P51812
UNP
8
1
EXPRESSION TAG
ASP
394
4JG6
A
P51812
UNP
9
1
EXPRESSION TAG
ASP
395
4JG6
A
P51812
UNP
10
1
EXPRESSION TAG
ASP
396
4JG6
A
P51812
UNP
11
1
EXPRESSION TAG
ASP
397
4JG6
A
P51812
UNP
12
1
EXPRESSION TAG
LYS
398
4JG6
A
P51812
UNP
13
1
LYS
CLONING ARTIFACT
GLU
591
4JG6
A
P51812
UNP
591
206
5
2
2
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
TYR
422
A
TYR
37
A
ASP
427
A
ASP
42
A
VAL
435
A
VAL
50
A
HIS
441
A
HIS
56
A
MET
446
A
MET
61
A
ASP
454
A
ASP
69
A
TYR
488
A
TYR
103
A
THR
493
A
THR
108
A
LEU
479
A
LEU
94
A
ASP
484
A
ASP
99
A
VAL
535
A
VAL
150
A
VAL
536
A
VAL
151
A
LYS
566
A
LYS
181
A
GLN
567
A
GLN
182
A
ILE
545
A
ILE
160
A
TYR
547
A
TYR
162
A
ILE
557
A
ILE
172
A
ILE
559
A
ILE
174
BINDING SITE FOR RESIDUE 1LB A 801
Software
7
BINDING SITE FOR RESIDUE NA A 802
Software
5
A
CYS
436
A
CYS
51
7
1_555
A
ALA
449
A
ALA
64
7
1_555
A
LYS
451
A
LYS
66
7
1_555
A
THR
493
A
THR
108
7
1_555
A
GLU
494
A
GLU
109
7
1_555
A
MET
496
A
MET
111
7
1_555
A
ASP
561
A
ASP
176
7
1_555
A
GLY
471
A
GLY
86
5
1_555
A
HIS
473
A
HIS
88
5
1_555
A
ILE
476
A
ILE
91
5
1_555
A
THR
478
A
THR
93
5
1_555
A
HOH
929
D
HOH
5
1_555
92
P 41 21 2