0.010931 0.000000 0.000976 0.000000 0.018672 0.000000 0.000000 0.000000 0.012258 0.00000 0.00000 0.00000 Hashimoto, H. Zhang, X. Cheng, X. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 95.10 90.00 91.486 53.555 81.902 C5 H5 N3 O3 155.111 4-amino-2-oxo-1,2-dihydropyrimidine-5-carboxylic acid non-polymer C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C5 H11 O7 P 214.110 2-DEOXY-5-PHOSPHONO-RIBOSE saccharide C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 N C N 3 N O N 4 N N N 5 N C N 6 N N N 7 N C N 8 N C N 9 N C N 10 N O N 11 N O N 12 N H N 13 N H N 14 N H N 15 N H N 16 N H N 17 N N N 18 S C N 19 N C N 20 N O N 21 N C N 22 N O N 23 N H N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N N N 31 S C N 32 N C N 33 N O N 34 N C N 35 N C N 36 N C N 37 N N N 38 N C N 39 N N N 40 N N N 41 N O N 42 N H N 43 N H N 44 N H N 45 N H N 46 N H N 47 N H N 48 N H N 49 N H N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N N N 58 S C N 59 N C N 60 N O N 61 N C N 62 N C N 63 N O N 64 N N N 65 N O N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 S C N 76 N C N 77 N O N 78 N C N 79 N C N 80 N O N 81 N O N 82 N O N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N H N 90 N N N 91 R C N 92 N C N 93 N O N 94 N C N 95 N S N 96 N O N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N O N 105 N P N 106 N O N 107 N O N 108 N O N 109 N C N 110 R C N 111 N O N 112 S C N 113 N O N 114 N C N 115 R C Y 116 N N Y 117 N C Y 118 N N Y 119 N C Y 120 N C N 121 N N Y 122 N N Y 123 N C Y 124 N N Y 125 N C N 126 N H N 127 N H N 128 N H N 129 N H N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N O N 141 N P N 142 N O N 143 N O N 144 N O N 145 N C N 146 R C N 147 N O N 148 S C N 149 N O N 150 N C N 151 R C N 152 N N N 153 N C N 154 N O N 155 N N N 156 N C N 157 N N N 158 N C N 159 N C N 160 N H N 161 N H N 162 N H N 163 N H N 164 N H N 165 N H N 166 N H N 167 N H N 168 N H N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N O N 175 N P N 176 N O N 177 N O N 178 N O N 179 N C N 180 R C N 181 N O N 182 S C N 183 N O N 184 N C N 185 R C Y 186 N N Y 187 N C Y 188 N N Y 189 N C N 190 N C N 191 N O N 192 N N N 193 N C N 194 N N N 195 N N Y 196 N C N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N O N 212 N P N 213 N O N 214 N O N 215 N O N 216 N C N 217 R C N 218 N O N 219 S C N 220 N O N 221 N C N 222 R C N 223 N N N 224 N C N 225 N O N 226 N N N 227 N C N 228 N O N 229 N C N 230 N C N 231 N C N 232 N H N 233 N H N 234 N H N 235 N H N 236 N H N 237 N H N 238 N H N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N N N 248 S C N 249 N C N 250 N O N 251 N C N 252 N C N 253 N C N 254 N O N 255 N N N 256 N O N 257 N H N 258 N H N 259 N H N 260 N H N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N N N 268 S C N 269 N C N 270 N O N 271 N C N 272 N C N 273 N C N 274 N O N 275 N O N 276 N O N 277 N H N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N N N 287 N C N 288 N C N 289 N O N 290 N O N 291 N H N 292 N H N 293 N H N 294 N H N 295 N H N 296 N N N 297 S C N 298 N C N 299 N O N 300 N C Y 301 N C Y 302 N N Y 303 N C Y 304 N C Y 305 N N N 306 N O N 307 N H N 308 N H N 309 N H N 310 N H N 311 N H N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N O N 318 N H N 319 N H N 320 N N N 321 S C N 322 N C N 323 N O N 324 S C N 325 N C N 326 N C N 327 N C N 328 N O N 329 N H N 330 N H N 331 N H N 332 N H N 333 N H N 334 N H N 335 N H N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N N N 343 S C N 344 N C N 345 N O N 346 N C N 347 N C N 348 N C N 349 N C N 350 N O N 351 N H N 352 N H N 353 N H N 354 N H N 355 N H N 356 N H N 357 N H N 358 N H N 359 N H N 360 N H N 361 N H N 362 N H N 363 N H N 364 N N N 365 S C N 366 N C N 367 N O N 368 N C N 369 N C N 370 N C N 371 N C N 372 N N N 373 N O N 374 N H N 375 N H N 376 N H N 377 N H N 378 N H N 379 N H N 380 N H N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N N N 390 S C N 391 N C N 392 N O N 393 N C N 394 N C N 395 N S N 396 N C N 397 N O N 398 N H N 399 N H N 400 N H N 401 N H N 402 N H N 403 N H N 404 N H N 405 N H N 406 N H N 407 N H N 408 N H N 409 S C N 410 N O N 411 N C N 412 S C N 413 N O N 414 R C N 415 N O N 416 N C N 417 N O N 418 N P N 419 N O N 420 N O N 421 N O N 422 N H N 423 N H N 424 N H N 425 N H N 426 N H N 427 N H N 428 N H N 429 N H N 430 N H N 431 N H N 432 N H N 433 N N N 434 S C N 435 N C N 436 N O N 437 N C Y 438 N C Y 439 N C Y 440 N C Y 441 N C Y 442 N C Y 443 N C N 444 N O N 445 N H N 446 N H N 447 N H N 448 N H N 449 N H N 450 N H N 451 N H N 452 N H N 453 N H N 454 N H N 455 N H N 456 N N N 457 S C N 458 N C N 459 N O N 460 N C N 461 N C N 462 N C N 463 N O N 464 N H N 465 N H N 466 N H N 467 N H N 468 N H N 469 N H N 470 N H N 471 N H N 472 N H N 473 N N N 474 S C N 475 N C N 476 N O N 477 N C N 478 N O N 479 N O N 480 N H N 481 N H N 482 N H N 483 N H N 484 N H N 485 N H N 486 N H N 487 N N N 488 S C N 489 N C N 490 N O N 491 R C N 492 N O N 493 N C N 494 N O N 495 N H N 496 N H N 497 N H N 498 N H N 499 N H N 500 N H N 501 N H N 502 N H N 503 N H N 504 N N N 505 S C N 506 N C N 507 N O N 508 N C Y 509 N C Y 510 N C Y 511 N C Y 512 N N Y 513 N C Y 514 N C Y 515 N C Y 516 N C Y 517 N C N 518 N O N 519 N H N 520 N H N 521 N H N 522 N H N 523 N H N 524 N H N 525 N H N 526 N H N 527 N H N 528 N H N 529 N H N 530 N H N 531 N N N 532 S C N 533 N C N 534 N O N 535 N C Y 536 N C Y 537 N C Y 538 N C Y 539 N C Y 540 N C Y 541 N C N 542 N O N 543 N O N 544 N H N 545 N H N 546 N H N 547 N H N 548 N H N 549 N H N 550 N H N 551 N H N 552 N H N 553 N H N 554 N H N 555 N N N 556 S C N 557 N C N 558 N O N 559 N C N 560 N C N 561 N C N 562 N O N 563 N H N 564 N H N 565 N H N 566 N H N 567 N H N 568 N H N 569 N H N 570 N H N 571 N H N 572 N H N 573 N H N 1 N doub N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N doub N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N doub N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N doub N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N sing N 34 N sing N 35 N doub N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N doub N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N doub N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N doub N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N doub N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N doub N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing Y 122 N sing Y 123 N sing Y 124 N doub N 125 N sing Y 126 N sing Y 127 N sing Y 128 N doub N 129 N sing Y 130 N doub N 131 N sing N 132 N sing Y 133 N sing Y 134 N doub N 135 N sing Y 136 N sing N 137 N sing N 138 N sing N 139 N doub N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N doub N 163 N sing N 164 N doub N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N doub N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N doub N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing Y 195 N sing Y 196 N sing Y 197 N doub N 198 N sing Y 199 N sing N 200 N sing Y 201 N doub N 202 N doub N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N doub N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N doub N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N doub N 237 N sing N 238 N sing N 239 N sing N 240 N doub N 241 N sing N 242 N sing N 243 N doub N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N doub N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N doub N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N doub N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N doub N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N doub N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N doub N 301 N sing N 302 N sing N 303 N sing N 304 N sing Y 305 N sing Y 306 N doub Y 307 N doub N 308 N sing Y 309 N sing N 310 N sing Y 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N doub N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N doub N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N doub N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N doub N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N sing N 397 N sing N 398 N sing N 399 N sing N 400 N sing N 401 N sing N 402 N sing N 403 N sing N 404 N sing N 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N sing N 410 N sing N 411 N sing N 412 N sing N 413 N sing N 414 N sing N 415 N sing N 416 N sing N 417 N sing N 418 N sing N 419 N sing N 420 N sing N 421 N doub N 422 N sing N 423 N sing N 424 N sing N 425 N sing N 426 N sing N 427 N sing N 428 N sing N 429 N sing N 430 N sing N 431 N sing N 432 N doub N 433 N sing N 434 N sing N 435 N sing N 436 N sing Y 437 N doub Y 438 N sing Y 439 N sing N 440 N sing Y 441 N doub N 442 N sing Y 443 N doub N 444 N sing Y 445 N sing N 446 N sing N 447 N sing N 448 N sing N 449 N sing N 450 N sing N 451 N sing N 452 N sing N 453 N sing N 454 N sing N 455 N doub N 456 N sing N 457 N sing N 458 N sing N 459 N sing N 460 N sing N 461 N sing N 462 N sing N 463 N sing N 464 N sing N 465 N sing N 466 N sing N 467 N sing N 468 N sing N 469 N sing N 470 N sing N 471 N sing N 472 N doub N 473 N sing N 474 N sing N 475 N sing N 476 N sing N 477 N sing N 478 N sing N 479 N sing N 480 N sing N 481 N sing N 482 N sing N 483 N sing N 484 N sing N 485 N doub N 486 N sing N 487 N sing N 488 N sing N 489 N sing N 490 N sing N 491 N sing N 492 N sing N 493 N sing N 494 N sing N 495 N sing N 496 N sing N 497 N sing N 498 N sing N 499 N sing N 500 N sing N 501 N doub N 502 N sing N 503 N sing N 504 N sing N 505 N sing Y 506 N doub Y 507 N sing Y 508 N sing N 509 N sing Y 510 N doub Y 511 N sing Y 512 N sing N 513 N sing Y 514 N sing Y 515 N doub N 516 N sing Y 517 N doub N 518 N sing Y 519 N sing N 520 N sing N 521 N sing N 522 N sing N 523 N sing N 524 N sing N 525 N sing N 526 N sing N 527 N sing N 528 N sing N 529 N doub N 530 N sing N 531 N sing N 532 N sing N 533 N sing Y 534 N doub Y 535 N sing Y 536 N sing N 537 N sing Y 538 N doub N 539 N sing Y 540 N doub N 541 N sing Y 542 N sing N 543 N sing N 544 N sing N 545 N sing N 546 N sing N 547 N sing N 548 N sing N 549 N sing N 550 N sing N 551 N sing N 552 N sing N 553 N doub N 554 N sing N 555 N sing N 556 N sing N 557 N sing N 558 N sing N 559 N sing N 560 N sing N 561 N sing N 562 N sing N 563 N sing N 564 N sing NE Dna Repair 1568-7864 12 535 540 10.1016/j.dnarep.2013.04.003 23680598 Activity and crystal structure of human thymine DNA glycosylase mutant N140A with 5-carboxylcytosine DNA at low pH. 2013 10.2210/pdb4jgc/pdb pdb_00004jgc 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 ROSENBAUM-ROCK MONOCHROMATO HIGH-RESOLUTION DOUBLE-CRYSTAL SI(220) SAGITTAL FOCUSING, ROSENBAUM-ROCK VERTICAL FOCUSING MIRROR CCD 2011-11-30 MARMOSAIC 300 mm CCD SINGLE WAVELENGTH M x-ray 1 1.0 1.0 22-ID APS 1.0 SYNCHROTRON APS BEAMLINE 22-ID 23027.645 G/T mismatch-specific thymine DNA glycosylase 3.2.2.29 UNP residues 111-308 N140A 1 man polymer 8646.565 oligonucleotide 1 syn polymer 8473.431 oligonucleotide containing 5-carboxylcytosine 1 syn polymer 155.111 4-amino-2-oxo-1,2-dihydropyrimidine-5-carboxylic acid 1 syn non-polymer 18.015 water 22 nat water Thymine-DNA glycosylase no no GSHMASFNGVSEAELLTKTLPDILTFNLDIVIIGIAPGLMAAYKGHHYPGPGNHFWKCLFMSGLSEVQLNHMDDHTLPGK YGIGFTNMVERTTPGSKDLSSKEFREGGRILVQKLQKYQPRIAVFNGKCIYEIFSKEVFGVKVKNLEFGLQPHKIPDTET LCYVMPSSSARCAQFPRAQDKVHYYIKLKDLRDQLKGIERNMDV GSHMASFNGVSEAELLTKTLPDILTFNLDIVIIGIAPGLMAAYKGHHYPGPGNHFWKCLFMSGLSEVQLNHMDDHTLPGK YGIGFTNMVERTTPGSKDLSSKEFREGGRILVQKLQKYQPRIAVFNGKCIYEIFSKEVFGVKVKNLEFGLQPHKIPDTET LCYVMPSSSARCAQFPRAQDKVHYYIKLKDLRDQLKGIERNMDV A polypeptide(L) no no (DC)(DA)(DG)(DC)(DT)(DC)(DT)(DG)(DT)(DA)(DC)(DG)(DT)(DG)(DA)(DG)(DC)(DA)(DG)(DT) (DG)(DG)(DA)(DC)(DA)(DG)(DC)(DT) CAGCTCTGTACGTGAGCAGTGGACAGCT C polydeoxyribonucleotide no yes (DA)(DG)(DC)(DT)(DG)(DT)(DC)(DC)(DA)(DC)(DT)(DG)(DC)(DT)(DC)(DA)(ORP)(DG)(DT) (DA)(DC)(DA)(DG)(DA)(DG)(DC)(DT)(DG) AGCTGTCCACTGCTCAXGTACAGAGCTG D polydeoxyribonucleotide n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human sample TDG 9606 Homo sapiens 562 Escherichia coli pXC1057 1 2.49 50.58 VAPOR DIFFUSION 4.6 30% polyethylene glycol (PEG) 4000, 0.2 M ammonium acetate, 0.1 M sodium acetate, pH 4.6, VAPOR DIFFUSION, temperature 289K 289 8.097 1 19 C 1 D 28 -2.817 C_DC1:DG28_D 1 -5.400 -0.304 0.096 -0.295 12.695 1 20 C 2 D 27 2.535 C_DA2:DT27_D 2 -10.742 -0.104 0.576 -0.165 17.845 1 19 C 3 D 26 4.107 C_DG3:DC26_D 3 -15.821 -0.554 0.787 -0.466 -2.219 1 19 C 4 D 25 6.050 C_DC4:DG25_D 4 -15.831 -0.357 0.277 -0.069 -0.855 1 20 C 5 D 24 -1.069 C_DT5:DA24_D 5 -14.123 -0.033 0.390 -0.166 -11.620 1 19 C 6 D 23 -0.174 C_DC6:DG23_D 6 -10.707 -0.437 0.534 -0.337 -3.995 1 20 C 7 D 22 -4.028 C_DT7:DA22_D 7 -15.559 -0.875 0.197 -0.161 -7.080 1 19 C 8 D 21 -2.830 C_DG8:DC21_D 8 -5.461 -0.356 -0.305 -0.349 -1.230 1 20 C 9 D 20 -4.471 C_DT9:DA20_D 9 -19.469 -0.402 0.068 -0.359 2.462 1 20 C 10 D 19 1.902 C_DA10:DT19_D 10 -9.862 -0.163 0.336 -0.279 12.179 1 19 C 11 D 18 1.651 C_DC11:DG18_D 11 -15.527 0.491 -0.010 0.014 -15.042 1 20 C 13 D 16 -4.803 C_DT13:DA16_D 12 -17.029 -0.884 0.444 -0.042 -9.905 1 19 C 14 D 15 4.157 C_DG14:DC15_D 13 -13.746 0.313 -0.515 0.042 -12.330 1 20 C 15 D 14 -4.702 C_DA15:DT14_D 14 -7.527 0.080 -0.200 0.178 7.127 1 19 C 16 D 13 -1.261 C_DG16:DC13_D 15 -17.373 0.082 0.536 -0.215 -3.476 1 19 C 17 D 12 4.495 C_DC17:DG12_D 16 -20.620 0.758 0.578 -0.264 10.968 1 20 C 18 D 11 -4.909 C_DA18:DT11_D 17 -23.497 0.160 0.491 -0.449 -2.238 1 19 C 19 D 10 2.187 C_DG19:DC10_D 18 -15.823 -0.269 0.297 -0.104 -5.118 1 20 C 20 D 9 -0.572 C_DT20:DA9_D 19 -20.746 0.067 0.602 -0.126 -8.010 1 19 C 21 D 8 -2.437 C_DG21:DC8_D 20 -8.084 -0.374 -0.208 -0.508 -5.604 1 19 C 22 D 7 4.232 C_DG22:DC7_D 21 -15.637 -0.952 0.127 0.096 -6.859 1 20 C 23 D 6 -9.781 C_DA23:DT6_D 22 -12.857 0.797 0.118 -0.153 7.161 1 19 C 24 D 5 7.592 C_DC24:DG5_D 23 -11.371 0.608 0.454 -0.219 1.179 1 20 C 25 D 4 -9.346 C_DA25:DT4_D 24 -14.109 -0.558 -0.279 -0.345 4.642 1 19 C 26 D 3 4.909 C_DG26:DC3_D 25 -17.551 -0.563 0.146 0.085 -3.695 1 19 C 27 D 2 6.515 C_DC27:DG2_D 26 -22.854 0.491 0.451 -0.094 2.118 1 20 C 28 D 1 2.288 C_DT28:DA1_D 27 -14.606 -0.634 0.040 -0.146 3.272 39.033 C C 1 2 -3.417 D D 28 27 3.270 -2.282 0.519 -0.270 CC_DC1DA2:DT27DG28_DD 1 -0.620 0.929 38.964 -0.129 -0.851 2.776 31.496 C C 2 3 14.211 D D 27 26 3.068 7.608 0.227 -0.546 CC_DA2DG3:DC26DT27_DD 2 -5.119 9.563 30.164 -2.302 -1.290 3.787 37.425 C C 3 4 -6.339 D D 26 25 3.753 -4.055 -0.074 -0.700 CC_DG3DC4:DG25DC26_DD 3 3.142 -4.912 37.085 -0.473 0.594 3.305 36.001 C C 4 5 1.004 D D 25 24 3.305 0.620 -0.475 -0.337 CC_DC4DT5:DA24DG25_DD 4 -0.534 0.864 35.992 -0.634 0.692 3.403 39.147 C C 5 6 2.495 D D 24 23 3.386 1.671 0.571 -0.076 CC_DT5DC6:DG23DA24_DD 5 1.863 -2.782 39.070 -0.321 -0.620 2.997 30.670 C C 6 7 7.779 D D 23 22 3.101 4.098 -0.413 -0.260 CC_DC6DT7:DA22DG23_DD 6 2.512 -4.768 30.300 -1.249 1.244 3.496 39.828 C C 7 8 9.295 D D 22 21 3.434 6.303 0.473 0.515 CC_DT7DG8:DC21DA22_DD 7 2.694 -3.973 39.257 -0.022 -0.362 3.156 29.110 C C 8 9 1.318 D D 21 20 3.149 0.661 -0.322 -0.368 CC_DG8DT9:DA20DC21_DD 8 -3.084 6.147 28.942 -0.873 -0.012 3.293 38.135 C C 9 10 10.097 D D 20 19 3.281 6.561 0.339 0.538 CC_DT9DA10:DT19DA20_DD 9 -2.740 4.216 37.491 -0.018 -0.870 3.107 37.069 C C 10 11 -0.957 D D 19 18 3.121 -0.608 -0.178 -0.021 CC_DA10DC11:DG18DT19_DD 10 2.045 -3.218 37.009 0.044 0.541 3.704 42.764 C C 13 14 9.225 D D 16 15 3.409 6.669 0.927 1.523 CC_DT13DG14:DC15DA16_DD 11 7.486 -10.354 41.625 1.352 -0.445 3.502 35.204 C C 14 15 7.147 D D 15 14 3.285 4.282 -1.272 0.433 CC_DG14DA15:DT14DC15_DD 12 -7.363 12.288 34.190 0.045 0.948 2.645 35.883 C C 15 16 9.044 D D 14 13 2.846 5.517 0.398 -0.277 CC_DA15DG16:DC13DT14_DD 13 -7.015 11.499 34.791 -1.123 -1.503 3.559 38.731 C C 16 17 -9.914 D D 13 12 3.560 -6.546 -0.463 -0.251 CC_DG16DC17:DG12DC13_DD 14 -0.510 0.773 38.192 0.501 0.630 2.865 32.866 C C 17 18 21.250 D D 12 11 2.934 11.769 -0.571 0.374 CC_DC17DA18:DT11DG12_DD 15 0.839 -1.515 30.730 -1.188 1.142 3.514 36.044 C C 18 19 -0.002 D D 11 10 3.512 -0.001 0.326 -0.501 CC_DA18DG19:DC10DT11_DD 16 0.209 -0.337 36.043 -0.810 -0.495 3.371 32.304 C C 19 20 -1.488 D D 10 9 3.326 -0.827 -0.531 -0.883 CC_DG19DT20:DA9DC10_DD 17 -1.878 3.377 32.241 -1.437 0.614 3.501 35.474 C C 20 21 6.593 D D 9 8 3.423 3.988 0.587 0.453 CC_DT20DG21:DC8DA9_DD 18 6.441 -10.647 34.681 0.118 0.047 3.202 33.489 C C 21 22 1.880 D D 8 7 3.153 1.079 -0.460 0.539 CC_DG21DG22:DC7DC8_DD 19 -5.087 8.861 33.094 0.761 -0.021 3.416 43.893 C C 22 23 0.810 D D 7 6 3.333 0.604 -1.006 -0.024 CC_DG22DA23:DT6DC7_DD 20 -4.609 6.177 43.659 -0.092 0.894 2.820 28.983 C C 23 24 8.196 D D 6 5 2.998 4.087 1.407 -0.521 CC_DA23DC24:DG5DT6_DD 21 -1.539 3.087 28.659 -1.848 -3.114 3.466 33.492 C C 24 25 -0.456 D D 5 4 3.545 -0.263 -1.341 0.527 CC_DC24DA25:DT4DG5_DD 22 1.798 -3.122 33.444 0.961 2.644 3.030 34.182 C C 25 26 9.826 D D 4 3 3.168 5.737 0.265 -0.273 CC_DA25DG26:DC3DT4_DD 23 -4.042 6.922 33.475 -1.332 -1.062 3.547 37.728 C C 26 27 -2.283 D D 3 2 3.565 -1.474 0.209 -0.256 CC_DG26DC27:DG2DC3_DD 24 -2.898 4.487 37.592 -0.189 -0.732 2.662 29.711 C C 27 28 19.851 D D 2 1 2.979 9.913 0.048 -0.285 CC_DC27DT28:DA1DG2_DD 25 6.317 -12.650 27.336 -2.429 1.100 chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model struct_conn struct_ref_seq_dif struct_site repository Initial release Database references Data collection Database references Derived calculations Refinement description 1 0 2013-05-29 1 1 2013-07-03 1 2 2023-09-20 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_conn.pdbx_leaving_atom_flag _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id HUMAN TDG IN A POST-REACTIVE COMPLEX WITH 5-HYDROXYMETHYLURACIL (5HMU) RCSB Y RCSB 2013-02-28 REL REL 1RT 4-amino-2-oxo-1,2-dihydropyrimidine-5-carboxylic acid HOH water DNA synthesis sample DNA synthesis sample 5-CARBOXY-2'-DEOXYCYTIDINE MONOPHOSPHATE in the DNA GOT CLEAVED INTO 5-CARBOXYLCYTOSINE BASE AND 2-DEOXY-5-PHOSPHONO-RIBOSE 4FNC PDB ENTRY 4FNC PDB experimental model 1CC 17 4 1RT 1RT 417 D HOH 3 5 HOH HOH 501 A HOH 5 5 HOH HOH 502 A HOH 6 5 HOH HOH 503 A HOH 8 5 HOH HOH 504 A HOH 11 5 HOH HOH 505 A HOH 12 5 HOH HOH 506 A HOH 13 5 HOH HOH 507 A HOH 14 5 HOH HOH 508 A HOH 15 5 HOH HOH 509 A HOH 16 5 HOH HOH 510 A HOH 19 5 HOH HOH 511 A HOH 20 5 HOH HOH 512 A HOH 21 5 HOH HOH 513 A HOH 22 5 HOH HOH 514 A HOH 23 5 HOH HOH 515 A HOH 4 5 HOH HOH 101 C HOH 1 5 HOH HOH 101 D HOH 7 5 HOH HOH 102 D HOH 9 5 HOH HOH 103 D HOH 10 5 HOH HOH 104 D HOH 17 5 HOH HOH 105 D HOH 18 5 HOH HOH 106 D n 1 105 A n 2 106 A n 3 107 A n 4 108 A n 5 109 A SER 110 n 6 SER 110 A PHE 111 n 7 PHE 111 A ASN 112 n 8 ASN 112 A GLY 113 n 9 GLY 113 A VAL 114 n 10 VAL 114 A SER 115 n 11 SER 115 A ALA 116 n 12 GLU 116 A ALA 117 n 13 ALA 117 A ALA 118 n 14 GLU 118 A LEU 119 n 15 LEU 119 A LEU 120 n 16 LEU 120 A THR 121 n 17 THR 121 A LYS 122 n 18 LYS 122 A THR 123 n 19 THR 123 A LEU 124 n 20 LEU 124 A PRO 125 n 21 PRO 125 A ASP 126 n 22 ASP 126 A ILE 127 n 23 ILE 127 A LEU 128 n 24 LEU 128 A THR 129 n 25 THR 129 A PHE 130 n 26 PHE 130 A ASN 131 n 27 ASN 131 A LEU 132 n 28 LEU 132 A ASP 133 n 29 ASP 133 A ILE 134 n 30 ILE 134 A VAL 135 n 31 VAL 135 A ILE 136 n 32 ILE 136 A ILE 137 n 33 ILE 137 A GLY 138 n 34 GLY 138 A ILE 139 n 35 ILE 139 A ALA 140 n 36 ALA 140 A PRO 141 n 37 PRO 141 A GLY 142 n 38 GLY 142 A LEU 143 n 39 LEU 143 A MET 144 n 40 MET 144 A ALA 145 n 41 ALA 145 A ALA 146 n 42 ALA 146 A TYR 147 n 43 TYR 147 A LYS 148 n 44 LYS 148 A GLY 149 n 45 GLY 149 A HIS 150 n 46 HIS 150 A HIS 151 n 47 HIS 151 A TYR 152 n 48 TYR 152 A PRO 153 n 49 PRO 153 A GLY 154 n 50 GLY 154 A PRO 155 n 51 PRO 155 A GLY 156 n 52 GLY 156 A ASN 157 n 53 ASN 157 A HIS 158 n 54 HIS 158 A PHE 159 n 55 PHE 159 A TRP 160 n 56 TRP 160 A LYS 161 n 57 LYS 161 A CYS 162 n 58 CYS 162 A LEU 163 n 59 LEU 163 A PHE 164 n 60 PHE 164 A MET 165 n 61 MET 165 A SER 166 n 62 SER 166 A GLY 167 n 63 GLY 167 A LEU 168 n 64 LEU 168 A SER 169 n 65 SER 169 A GLU 170 n 66 GLU 170 A VAL 171 n 67 VAL 171 A GLN 172 n 68 GLN 172 A LEU 173 n 69 LEU 173 A ASN 174 n 70 ASN 174 A HIS 175 n 71 HIS 175 A MET 176 n 72 MET 176 A ASP 177 n 73 ASP 177 A ASP 178 n 74 ASP 178 A HIS 179 n 75 HIS 179 A THR 180 n 76 THR 180 A LEU 181 n 77 LEU 181 A PRO 182 n 78 PRO 182 A GLY 183 n 79 GLY 183 A LYS 184 n 80 LYS 184 A TYR 185 n 81 TYR 185 A GLY 186 n 82 GLY 186 A ILE 187 n 83 ILE 187 A GLY 188 n 84 GLY 188 A PHE 189 n 85 PHE 189 A THR 190 n 86 THR 190 A ASN 191 n 87 ASN 191 A MET 192 n 88 MET 192 A VAL 193 n 89 VAL 193 A GLU 194 n 90 GLU 194 A ARG 195 n 91 ARG 195 A THR 196 n 92 THR 196 A THR 197 n 93 THR 197 A PRO 198 n 94 PRO 198 A GLY 199 n 95 GLY 199 A SER 200 n 96 SER 200 A LYS 201 n 97 LYS 201 A ASP 202 n 98 ASP 202 A LEU 203 n 99 LEU 203 A SER 204 n 100 SER 204 A SER 205 n 101 SER 205 A LYS 206 n 102 LYS 206 A GLU 207 n 103 GLU 207 A PHE 208 n 104 PHE 208 A ARG 209 n 105 ARG 209 A GLU 210 n 106 GLU 210 A GLY 211 n 107 GLY 211 A GLY 212 n 108 GLY 212 A ARG 213 n 109 ARG 213 A ILE 214 n 110 ILE 214 A LEU 215 n 111 LEU 215 A VAL 216 n 112 VAL 216 A GLN 217 n 113 GLN 217 A LYS 218 n 114 LYS 218 A LEU 219 n 115 LEU 219 A GLN 220 n 116 GLN 220 A LYS 221 n 117 LYS 221 A TYR 222 n 118 TYR 222 A GLN 223 n 119 GLN 223 A PRO 224 n 120 PRO 224 A ARG 225 n 121 ARG 225 A ILE 226 n 122 ILE 226 A ALA 227 n 123 ALA 227 A VAL 228 n 124 VAL 228 A PHE 229 n 125 PHE 229 A ASN 230 n 126 ASN 230 A GLY 231 n 127 GLY 231 A LYS 232 n 128 LYS 232 A CYS 233 n 129 CYS 233 A ILE 234 n 130 ILE 234 A TYR 235 n 131 TYR 235 A GLU 236 n 132 GLU 236 A ILE 237 n 133 ILE 237 A PHE 238 n 134 PHE 238 A SER 239 n 135 SER 239 A LYS 240 n 136 LYS 240 A GLU 241 n 137 GLU 241 A VAL 242 n 138 VAL 242 A PHE 243 n 139 PHE 243 A GLY 244 n 140 GLY 244 A VAL 245 n 141 VAL 245 A LYS 246 n 142 LYS 246 A VAL 247 n 143 VAL 247 A LYS 248 n 144 LYS 248 A ASN 249 n 145 ASN 249 A LEU 250 n 146 LEU 250 A GLU 251 n 147 GLU 251 A PHE 252 n 148 PHE 252 A GLY 253 n 149 GLY 253 A LEU 254 n 150 LEU 254 A GLN 255 n 151 GLN 255 A PRO 256 n 152 PRO 256 A HIS 257 n 153 HIS 257 A LYS 258 n 154 LYS 258 A ILE 259 n 155 ILE 259 A PRO 260 n 156 PRO 260 A ASP 261 n 157 ASP 261 A THR 262 n 158 THR 262 A GLU 263 n 159 GLU 263 A THR 264 n 160 THR 264 A LEU 265 n 161 LEU 265 A CYS 266 n 162 CYS 266 A TYR 267 n 163 TYR 267 A VAL 268 n 164 VAL 268 A MET 269 n 165 MET 269 A PRO 270 n 166 PRO 270 A SER 271 n 167 SER 271 A SER 272 n 168 SER 272 A SER 273 n 169 SER 273 A ALA 274 n 170 ALA 274 A ARG 275 n 171 ARG 275 A CYS 276 n 172 CYS 276 A ALA 277 n 173 ALA 277 A GLN 278 n 174 GLN 278 A PHE 279 n 175 PHE 279 A PRO 280 n 176 PRO 280 A ARG 281 n 177 ARG 281 A ALA 282 n 178 ALA 282 A GLN 283 n 179 GLN 283 A ASP 284 n 180 ASP 284 A LYS 285 n 181 LYS 285 A VAL 286 n 182 VAL 286 A HIS 287 n 183 HIS 287 A TYR 288 n 184 TYR 288 A TYR 289 n 185 TYR 289 A ILE 290 n 186 ILE 290 A LYS 291 n 187 LYS 291 A LEU 292 n 188 LEU 292 A LYS 293 n 189 LYS 293 A ASP 294 n 190 ASP 294 A LEU 295 n 191 LEU 295 A ARG 296 n 192 ARG 296 A ASP 297 n 193 ASP 297 A GLN 298 n 194 GLN 298 A LEU 299 n 195 LEU 299 A LYS 300 n 196 LYS 300 A GLY 301 n 197 GLY 301 A ALA 302 n 198 ILE 302 A GLU 303 n 199 GLU 303 A ARG 304 n 200 ARG 304 A ALA 305 n 201 ASN 305 A n 202 306 A n 203 307 A n 204 308 A DC 1 n 1 DC 1 C DA 2 n 2 DA 2 C DG 3 n 3 DG 3 C DC 4 n 4 DC 4 C DT 5 n 5 DT 5 C DC 6 n 6 DC 6 C DT 7 n 7 DT 7 C DG 8 n 8 DG 8 C DT 9 n 9 DT 9 C DA 10 n 10 DA 10 C DC 11 n 11 DC 11 C DG 12 n 12 DG 12 C DT 13 n 13 DT 13 C DG 14 n 14 DG 14 C DA 15 n 15 DA 15 C DG 16 n 16 DG 16 C DC 17 n 17 DC 17 C DA 18 n 18 DA 18 C DG 19 n 19 DG 19 C DT 20 n 20 DT 20 C DG 21 n 21 DG 21 C DG 22 n 22 DG 22 C DA 23 n 23 DA 23 C DC 24 n 24 DC 24 C DA 25 n 25 DA 25 C DG 26 n 26 DG 26 C DC 27 n 27 DC 27 C DT 28 n 28 DT 28 C DA 1 n 1 DA 1 D DG 2 n 2 DG 2 D DC 3 n 3 DC 3 D DT 4 n 4 DT 4 D DG 5 n 5 DG 5 D DT 6 n 6 DT 6 D DC 7 n 7 DC 7 D DC 8 n 8 DC 8 D DA 9 n 9 DA 9 D DC 10 n 10 DC 10 D DT 11 n 11 DT 11 D DG 12 n 12 DG 12 D DC 13 n 13 DC 13 D DT 14 n 14 DT 14 D DC 15 n 15 DC 15 D DA 16 n 16 DA 16 D 1CC 17 n 17 ORP 17 D DG 18 n 18 DG 18 D DT 19 n 19 DT 19 D DA 20 n 20 DA 20 D DC 21 n 21 DC 21 D DA 22 n 22 DA 22 D DG 23 n 23 DG 23 D DA 24 n 24 DA 24 D DG 25 n 25 DG 25 D DC 26 n 26 DC 26 D DT 27 n 27 DT 27 D DG 28 n 28 DG 28 D author_and_software_defined_assembly PISA 3 trimeric 5000 -24 17800 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O GLY 188 A O GLY 84 A N ILE 134 A N ILE 30 A N ILE 137 A N ILE 33 A O VAL 228 A O VAL 124 A N ALA 227 A N ALA 123 A O LEU 265 A O LEU 161 A O VAL 268 A O VAL 164 A N GLY 253 A N GLY 149 1 A CG GLU 116 A CG GLU 12 1 Y 1 A CD GLU 116 A CD GLU 12 1 Y 1 A OE1 GLU 116 A OE1 GLU 12 1 Y 1 A OE2 GLU 116 A OE2 GLU 12 1 Y 1 A CG GLU 118 A CG GLU 14 1 Y 1 A CD GLU 118 A CD GLU 14 1 Y 1 A OE1 GLU 118 A OE1 GLU 14 1 Y 1 A OE2 GLU 118 A OE2 GLU 14 1 Y 1 A CG LYS 161 A CG LYS 57 1 Y 1 A CD LYS 161 A CD LYS 57 1 Y 1 A CE LYS 161 A CE LYS 57 1 Y 1 A NZ LYS 161 A NZ LYS 57 1 Y 1 A CG LYS 201 A CG LYS 97 1 Y 1 A CD LYS 201 A CD LYS 97 1 Y 1 A CE LYS 201 A CE LYS 97 1 Y 1 A NZ LYS 201 A NZ LYS 97 1 Y 1 A CG LYS 206 A CG LYS 102 1 Y 1 A CD LYS 206 A CD LYS 102 1 Y 1 A CE LYS 206 A CE LYS 102 1 Y 1 A NZ LYS 206 A NZ LYS 102 1 Y 1 A CG1 ILE 302 A CG1 ILE 198 1 Y 1 A CG2 ILE 302 A CG2 ILE 198 1 Y 1 A CD1 ILE 302 A CD1 ILE 198 1 Y 1 A CG GLU 303 A CG GLU 199 1 Y 1 A CD GLU 303 A CD GLU 199 1 Y 1 A OE1 GLU 303 A OE1 GLU 199 1 Y 1 A OE2 GLU 303 A OE2 GLU 199 1 Y 1 A CG ARG 304 A CG ARG 200 1 Y 1 A CD ARG 304 A CD ARG 200 1 Y 1 A NE ARG 304 A NE ARG 200 1 Y 1 A CZ ARG 304 A CZ ARG 200 1 Y 1 A NH1 ARG 304 A NH1 ARG 200 1 Y 1 A NH2 ARG 304 A NH2 ARG 200 1 Y 1 A CG ASN 305 A CG ASN 201 1 Y 1 A OD1 ASN 305 A OD1 ASN 201 1 Y 1 A ND2 ASN 305 A ND2 ASN 201 1 Y 1 C O5' DC 1 B O5' DC 1 1 Y 1 D O5' DA 1 C O5' DA 1 1 Y 1 A GLY 105 A GLY 1 1 Y 1 A SER 106 A SER 2 1 Y 1 A HIS 107 A HIS 3 1 Y 1 A MET 108 A MET 4 1 Y 1 A ALA 109 A ALA 5 1 Y 1 A MET 306 A MET 202 1 Y 1 A ASP 307 A ASP 203 1 Y 1 A VAL 308 A VAL 204 1 Y 1 A A PRO GLY 153 154 -137.18 1 10.83 1.40 123.60 134.43 A A A CD NE CZ ARG ARG ARG 275 275 275 B B B N 1 9.22 0.50 120.30 129.52 A A A NE CZ NH1 ARG ARG ARG 275 275 275 B B B N 1 -4.40 0.50 120.30 115.90 A A A NE CZ NH2 ARG ARG ARG 275 275 275 B B B N 1 2.87 0.30 108.30 111.17 C C C O4' C1' N9 DG DG DG 3 3 3 N 1 2.01 0.30 108.30 110.31 D D D O4' C1' N1 DC DC DC 21 21 21 N 1 A A C O GLY GLY 156 156 -0.178 0.016 1.232 1.054 N 1 A A N CA ASN ASN 157 157 -0.193 0.020 1.459 1.266 N 1 A A CG OD1 ASN ASN 157 157 -0.158 0.022 1.235 1.077 N 1 A A CG ND2 ASN ASN 157 157 -0.155 0.025 1.324 1.169 N 1 A A CB CG ARG ARG 275 275 -0.430 0.027 1.521 1.091 B N 1 A ALA 140 -176.26 137.54 1 A GLU 170 65.59 -8.37 1 A GLN 223 52.18 72.02 31.1096 -0.0000 -3.7997 -10.6579 0.0000 -20.4517 0.2833 0.2298 0.2324 2.582 45.56 578 11567 5.00 91.79 0.44 RANDOM 1 THROUGHOUT 1.35 MOLECULAR REPLACEMENT 33.62 0.90 1.11 PDB ENTRY 4FNC ML FLAT BULK SOLVENT MODEL 38.336 0.324 2.582 45.56 22 2690 11 1133 1524 0.019 2853 1.196 4097 22.916 1131 0.050 451 0.007 331 0.3985 0.3834 2.8423 122 2232 76.00 0.3647 0.2794 3.2535 139 2753 92.00 0.2911 0.2277 4.0986 156 2974 99.00 0.2354 0.1939 45.5691 161 3030 100.00 2.582 45.56 4JGC 11604 -3.0 0.077 1 15.7 4.0 92.9 0.365 2.582 2.68 2.0 922 1 2.8 73.4 data collection HKL-2000 model building PHENIX refinement PHENIX (phenix.refine: 1.7.3_928) data reduction HKL-2000 data scaling HKL-2000 phasing PHENIX Human TDG N140A mutant IN A COMPLEX WITH 5-carboxylcytosine (5caC) 1 N N 2 N N 3 N N 4 N N 5 N N 5 N N 5 N N A SER 115 A SER 11 HELX_P A LYS 122 A LYS 18 1 1 8 A GLY 142 A GLY 38 HELX_P A GLY 149 A GLY 45 1 2 8 A HIS 158 A HIS 54 HELX_P A SER 166 A SER 62 1 3 9 A ASN 174 A ASN 70 HELX_P A HIS 179 A HIS 75 5 4 6 A THR 180 A THR 76 HELX_P A TYR 185 A TYR 81 1 5 6 A SER 204 A SER 100 HELX_P A GLN 223 A GLN 119 1 6 20 A LYS 232 A LYS 128 HELX_P A PHE 243 A PHE 139 1 7 12 A ARG 281 A ARG 177 HELX_P A ASN 305 A ASN 201 1 8 25 covale 1.608 both D DA 16 C O3' DA 16 1_555 D ORP 17 C P ORP 17 1_555 covale 1.606 one D ORP 17 C O3 ORP 17 1_555 D DG 18 C P DG 18 1_555 hydrog WATSON-CRICK C DC 1 B N3 DC 1 1_555 D DG 28 C N1 DG 28 1_555 hydrog WATSON-CRICK C DC 1 B N4 DC 1 1_555 D DG 28 C O6 DG 28 1_555 hydrog WATSON-CRICK C DC 1 B O2 DC 1 1_555 D DG 28 C N2 DG 28 1_555 hydrog WATSON-CRICK C DA 2 B N1 DA 2 1_555 D DT 27 C N3 DT 27 1_555 hydrog WATSON-CRICK C DA 2 B N6 DA 2 1_555 D DT 27 C O4 DT 27 1_555 hydrog WATSON-CRICK C DG 3 B N1 DG 3 1_555 D DC 26 C N3 DC 26 1_555 hydrog WATSON-CRICK C DG 3 B N2 DG 3 1_555 D DC 26 C O2 DC 26 1_555 hydrog WATSON-CRICK C DG 3 B O6 DG 3 1_555 D DC 26 C N4 DC 26 1_555 hydrog WATSON-CRICK C DC 4 B N3 DC 4 1_555 D DG 25 C N1 DG 25 1_555 hydrog WATSON-CRICK C DC 4 B N4 DC 4 1_555 D DG 25 C O6 DG 25 1_555 hydrog WATSON-CRICK C DC 4 B O2 DC 4 1_555 D DG 25 C N2 DG 25 1_555 hydrog WATSON-CRICK C DT 5 B N3 DT 5 1_555 D DA 24 C N1 DA 24 1_555 hydrog WATSON-CRICK C DT 5 B O4 DT 5 1_555 D DA 24 C N6 DA 24 1_555 hydrog WATSON-CRICK C DC 6 B N3 DC 6 1_555 D DG 23 C N1 DG 23 1_555 hydrog WATSON-CRICK C DC 6 B N4 DC 6 1_555 D DG 23 C O6 DG 23 1_555 hydrog WATSON-CRICK C DC 6 B O2 DC 6 1_555 D DG 23 C N2 DG 23 1_555 hydrog WATSON-CRICK C DT 7 B N3 DT 7 1_555 D DA 22 C N1 DA 22 1_555 hydrog WATSON-CRICK C DT 7 B O4 DT 7 1_555 D DA 22 C N6 DA 22 1_555 hydrog WATSON-CRICK C DG 8 B N1 DG 8 1_555 D DC 21 C N3 DC 21 1_555 hydrog WATSON-CRICK C DG 8 B N2 DG 8 1_555 D DC 21 C O2 DC 21 1_555 hydrog WATSON-CRICK C DG 8 B O6 DG 8 1_555 D DC 21 C N4 DC 21 1_555 hydrog WATSON-CRICK C DT 9 B N3 DT 9 1_555 D DA 20 C N1 DA 20 1_555 hydrog WATSON-CRICK C DT 9 B O4 DT 9 1_555 D DA 20 C N6 DA 20 1_555 hydrog WATSON-CRICK C DA 10 B N1 DA 10 1_555 D DT 19 C N3 DT 19 1_555 hydrog WATSON-CRICK C DA 10 B N6 DA 10 1_555 D DT 19 C O4 DT 19 1_555 hydrog WATSON-CRICK C DC 11 B N3 DC 11 1_555 D DG 18 C N1 DG 18 1_555 hydrog WATSON-CRICK C DC 11 B N4 DC 11 1_555 D DG 18 C O6 DG 18 1_555 hydrog WATSON-CRICK C DC 11 B O2 DC 11 1_555 D DG 18 C N2 DG 18 1_555 hydrog WATSON-CRICK C DT 13 B N3 DT 13 1_555 D DA 16 C N1 DA 16 1_555 hydrog WATSON-CRICK C DT 13 B O4 DT 13 1_555 D DA 16 C N6 DA 16 1_555 hydrog WATSON-CRICK C DG 14 B N1 DG 14 1_555 D DC 15 C N3 DC 15 1_555 hydrog WATSON-CRICK C DG 14 B N2 DG 14 1_555 D DC 15 C O2 DC 15 1_555 hydrog WATSON-CRICK C DG 14 B O6 DG 14 1_555 D DC 15 C N4 DC 15 1_555 hydrog WATSON-CRICK C DA 15 B N1 DA 15 1_555 D DT 14 C N3 DT 14 1_555 hydrog WATSON-CRICK C DA 15 B N6 DA 15 1_555 D DT 14 C O4 DT 14 1_555 hydrog WATSON-CRICK C DG 16 B N1 DG 16 1_555 D DC 13 C N3 DC 13 1_555 hydrog WATSON-CRICK C DG 16 B N2 DG 16 1_555 D DC 13 C O2 DC 13 1_555 hydrog WATSON-CRICK C DG 16 B O6 DG 16 1_555 D DC 13 C N4 DC 13 1_555 hydrog DC-DT MISPAIR C DC 17 B N4 DC 17 1_555 D DT 11 C O4 DT 11 1_555 hydrog WATSON-CRICK C DC 17 B N3 DC 17 1_555 D DG 12 C N1 DG 12 1_555 hydrog WATSON-CRICK C DC 17 B N4 DC 17 1_555 D DG 12 C O6 DG 12 1_555 hydrog WATSON-CRICK C DC 17 B O2 DC 17 1_555 D DG 12 C N2 DG 12 1_555 hydrog WATSON-CRICK C DA 18 B N1 DA 18 1_555 D DT 11 C N3 DT 11 1_555 hydrog WATSON-CRICK C DA 18 B N6 DA 18 1_555 D DT 11 C O4 DT 11 1_555 hydrog WATSON-CRICK C DG 19 B N1 DG 19 1_555 D DC 10 C N3 DC 10 1_555 hydrog WATSON-CRICK C DG 19 B N2 DG 19 1_555 D DC 10 C O2 DC 10 1_555 hydrog WATSON-CRICK C DG 19 B O6 DG 19 1_555 D DC 10 C N4 DC 10 1_555 hydrog WATSON-CRICK C DT 20 B N3 DT 20 1_555 D DA 9 C N1 DA 9 1_555 hydrog WATSON-CRICK C DT 20 B O4 DT 20 1_555 D DA 9 C N6 DA 9 1_555 hydrog WATSON-CRICK C DG 21 B N1 DG 21 1_555 D DC 8 C N3 DC 8 1_555 hydrog WATSON-CRICK C DG 21 B N2 DG 21 1_555 D DC 8 C O2 DC 8 1_555 hydrog WATSON-CRICK C DG 21 B O6 DG 21 1_555 D DC 8 C N4 DC 8 1_555 hydrog WATSON-CRICK C DG 22 B N1 DG 22 1_555 D DC 7 C N3 DC 7 1_555 hydrog WATSON-CRICK C DG 22 B N2 DG 22 1_555 D DC 7 C O2 DC 7 1_555 hydrog WATSON-CRICK C DG 22 B O6 DG 22 1_555 D DC 7 C N4 DC 7 1_555 hydrog WATSON-CRICK C DA 23 B N1 DA 23 1_555 D DT 6 C N3 DT 6 1_555 hydrog WATSON-CRICK C DA 23 B N6 DA 23 1_555 D DT 6 C O4 DT 6 1_555 hydrog WATSON-CRICK C DC 24 B N3 DC 24 1_555 D DG 5 C N1 DG 5 1_555 hydrog WATSON-CRICK C DC 24 B N4 DC 24 1_555 D DG 5 C O6 DG 5 1_555 hydrog WATSON-CRICK C DC 24 B O2 DC 24 1_555 D DG 5 C N2 DG 5 1_555 hydrog WATSON-CRICK C DA 25 B N1 DA 25 1_555 D DT 4 C N3 DT 4 1_555 hydrog WATSON-CRICK C DA 25 B N6 DA 25 1_555 D DT 4 C O4 DT 4 1_555 hydrog WATSON-CRICK C DG 26 B N1 DG 26 1_555 D DC 3 C N3 DC 3 1_555 hydrog WATSON-CRICK C DG 26 B N2 DG 26 1_555 D DC 3 C O2 DC 3 1_555 hydrog WATSON-CRICK C DG 26 B O6 DG 26 1_555 D DC 3 C N4 DC 3 1_555 hydrog WATSON-CRICK C DC 27 B N3 DC 27 1_555 D DG 2 C N1 DG 2 1_555 hydrog WATSON-CRICK C DC 27 B N4 DC 27 1_555 D DG 2 C O6 DG 2 1_555 hydrog WATSON-CRICK C DC 27 B O2 DC 27 1_555 D DG 2 C N2 DG 2 1_555 hydrog WATSON-CRICK C DT 28 B N3 DT 28 1_555 D DA 1 C N1 DA 1 1_555 hydrog WATSON-CRICK C DT 28 B O4 DT 28 1_555 D DA 1 C N6 DA 1 1_555 HYDROLASE/DNA 5-carboxylcytosine; thymine DNA glycosylase; DNA modification; DNA 5mC oxidation; epigenetic regulation, DNA demethylation, 5-carboxylcytosine, HYDROLASE-DNA complex TDG_HUMAN UNP 1 111 Q13569 FNGVSEAELLTKTLPDILTFNLDIVIIGINPGLMAAYKGHHYPGPGNHFWKCLFMSGLSEVQLNHMDDHTLPGKYGIGFT NMVERTTPGSKDLSSKEFREGGRILVQKLQKYQPRIAVFNGKCIYEIFSKEVFGVKVKNLEFGLQPHKIPDTETLCYVMP SSSARCAQFPRAQDKVHYYIKLKDLRDQLKGIERNMDV 4JGC PDB 2 4JGC CAGCTCTGTACGTGAGCAGTGGACAGCT 4JGC PDB 3 4JGC AGCTGTCCACTGCTCAXGTACAGAGCTG 111 308 4JGC 111 308 Q13569 A 1 7 204 1 28 4JGC 1 28 4JGC C 2 1 28 1 28 4JGC 1 28 4JGC D 3 1 28 1 expression tag GLY 105 4JGC A Q13569 UNP 1 1 expression tag SER 106 4JGC A Q13569 UNP 2 1 expression tag HIS 107 4JGC A Q13569 UNP 3 1 expression tag MET 108 4JGC A Q13569 UNP 4 1 expression tag ALA 109 4JGC A Q13569 UNP 5 1 expression tag SER 110 4JGC A Q13569 UNP 6 1 ASN engineered mutation ALA 140 4JGC A Q13569 UNP 140 36 5 parallel parallel parallel anti-parallel A ILE 187 A ILE 83 A ASN 191 A ASN 87 A ILE 134 A ILE 30 A GLY 138 A GLY 34 A ILE 226 A ILE 122 A ASN 230 A ASN 126 A LEU 265 A LEU 161 A MET 269 A MET 165 A GLY 253 A GLY 149 A LEU 254 A LEU 150 BINDING SITE FOR RESIDUE 1RT D 417 D 1RT 417 Software 10 A GLY 138 A GLY 34 10 1_555 A ILE 139 A ILE 35 10 1_555 A ALA 140 A ALA 36 10 1_555 A PRO 141 A PRO 37 10 1_555 A GLY 142 A GLY 38 10 1_555 A TYR 152 A TYR 48 10 1_555 A ASN 191 A ASN 87 10 1_555 A ASN 230 A ASN 126 10 1_555 A SER 271 A SER 167 10 1_555 D ORP 17 C ORP 17 10 1_555 5 C 1 2 1