0.006338 0.000000 0.000000 0.000000 0.006338 0.000000 0.000000 0.000000 0.006338 0.000000 0.000000 0.000000 Bonanno, J.B. Toro, R. Gizzi, A. Chan, M.K. Garrett-Thomson, S.C. Patel, H. Lim, S. Matikainen, B. Celikgil, A. Garforth, S. Hillerich, B. Seidel, R. Rand, J.H. Almo, S.C. New York Structural Genomics Research Consortium (NYSGRC) Atoms-to-Animals: The Immune Function Network (IFN) http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 48 90.000 90.000 90.000 157.790 157.790 157.790 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking O4 S -2 96.063 SULFATE ION non-polymer C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C Y 142 N C Y 143 N N Y 144 N C Y 145 N C Y 146 N N N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N N N 159 S C N 160 N C N 161 N O N 162 S C N 163 N C N 164 N C N 165 N C N 166 N O N 167 N H N 168 N H N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N N N 181 S C N 182 N C N 183 N O N 184 N C N 185 N C N 186 N C N 187 N C N 188 N O N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N N N 203 S C N 204 N C N 205 N O N 206 N C N 207 N C N 208 N C N 209 N C N 210 N N N 211 N O N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N N N 228 S C N 229 N C N 230 N O N 231 N C N 232 N C N 233 N S N 234 N C N 235 N O N 236 N H N 237 N H N 238 N H N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N N N 248 S C N 249 N C N 250 N O N 251 N C Y 252 N C Y 253 N C Y 254 N C Y 255 N C Y 256 N C Y 257 N C N 258 N O N 259 N H N 260 N H N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N N N 271 S C N 272 N C N 273 N O N 274 N C N 275 N C N 276 N C N 277 N O N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N N N 288 S C N 289 N C N 290 N O N 291 N C N 292 N O N 293 N O N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N S N 302 N O N 303 N O N 304 N O N 305 N O N 306 N N N 307 S C N 308 N C N 309 N O N 310 R C N 311 N O N 312 N C N 313 N O N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N N N 324 S C N 325 N C N 326 N O N 327 N C Y 328 N C Y 329 N C Y 330 N C Y 331 N N Y 332 N C Y 333 N C Y 334 N C Y 335 N C Y 336 N C N 337 N O N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N H N 350 N N N 351 S C N 352 N C N 353 N O N 354 N C Y 355 N C Y 356 N C Y 357 N C Y 358 N C Y 359 N C Y 360 N C N 361 N O N 362 N O N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N H N 374 N N N 375 S C N 376 N C N 377 N O N 378 N C N 379 N C N 380 N C N 381 N O N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 392 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N doub N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N doub N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N doub N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N doub N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N doub N 242 N sing N 243 N sing N 244 N sing N 245 N sing Y 246 N doub Y 247 N sing Y 248 N sing N 249 N sing Y 250 N doub N 251 N sing Y 252 N doub N 253 N sing Y 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N doub N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N doub N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N doub N 289 N doub N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N doub N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N doub N 315 N sing N 316 N sing N 317 N sing N 318 N sing Y 319 N doub Y 320 N sing Y 321 N sing N 322 N sing Y 323 N doub Y 324 N sing Y 325 N sing N 326 N sing Y 327 N sing Y 328 N doub N 329 N sing Y 330 N doub N 331 N sing Y 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N doub N 343 N sing N 344 N sing N 345 N sing N 346 N sing Y 347 N doub Y 348 N sing Y 349 N sing N 350 N sing Y 351 N doub N 352 N sing Y 353 N doub N 354 N sing Y 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N doub N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing To be Published 0353 Crystal structure of a C-terminal two domain fragment of human beta-2-glycoprotein 1 10.2210/pdb4jhs/pdb pdb_00004jhs 100 1 CCD 2011-06-19 ADSC QUANTUM 315r Si(111) SINGLE WAVELENGTH M x-ray 1 0.97950 1.0 X29A NSLS 0.97950 SYNCHROTRON NSLS BEAMLINE X29A 20722.479 Beta-2-glycoprotein 1 C-terminal two domain fragment (UNP residues 203-345) 1 man polymer 96.063 SULFATE ION 3 syn non-polymer APC inhibitor, Activated protein C-binding protein, Anticardiolipin cofactor, Apolipoprotein H, Apo-H, Beta-2-glycoprotein I, B2GPI, Beta(2)GPI no no QDYKDDDDKHHHHHHHHHHENLYFQSHVLFIFPRTSGVKCPFPSRPDNGFVNYPAKPTLYYKDKATFGCHDGYSLDGPEE IECTKLGNWSAMPSCKASCKVPVKKATVVYQGERVKIQEKFKNGMLHGDKVSFFCKNKEKKCSYTEDAQCIDGTIEVPKC FKEHSSLAFWKTDASDVKPC QDYKDDDDKHHHHHHHHHHENLYFQSHVLFIFPRTSGVKCPFPSRPDNGFVNYPAKPTLYYKDKATFGCHDGYSLDGPEE IECTKLGNWSAMPSCKASCKVPVKKATVVYQGERVKIQEKFKNGMLHGDKVSFFCKNKEKKCSYTEDAQCIDGTIEVPKC FKEHSSLAFWKTDASDVKPC A NYSGRC-016193 polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human sample APOH, B2G1 9606 Homo sapiens 7111 TRICHOPLUSIA NI BTI-TN-5B1-4 plasmid pIEx 1 3.95 68.86 VAPOR DIFFUSION 4.6 100mM sodium acetate trihydrate pH 4.6, 2.0M ammonium sulfate, vapor diffusion, temperature 294K 294 New York Structural Genomics Research Consortium NYSGRC PSI:Biology Atoms-to-Animals: The Immune Function Network IFN PSI:Biology software chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model struct_ref_seq_dif struct_site repository Initial release Refinement description Data collection Database references Derived calculations Refinement description 1 0 2013-04-24 1 1 2017-11-15 1 2 2023-09-20 _software.name _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id Y RCSB Y RCSB 2013-03-05 REL REL SO4 SULFATE ION 1C1Z PDB experimental model SO4 1 2 SO4 SO4 401 A SO4 2 2 SO4 SO4 402 A SO4 3 2 SO4 SO4 403 A n 1 166 A n 2 167 A n 3 168 A n 4 169 A n 5 170 A n 6 171 A n 7 172 A n 8 173 A n 9 174 A n 10 175 A n 11 176 A n 12 177 A n 13 178 A n 14 179 A n 15 180 A n 16 181 A n 17 182 A n 18 183 A n 19 184 A n 20 185 A n 21 186 A n 22 187 A n 23 188 A n 24 189 A n 25 190 A n 26 191 A n 27 192 A n 28 193 A n 29 194 A n 30 195 A n 31 196 A n 32 197 A n 33 198 A n 34 199 A n 35 200 A n 36 201 A n 37 202 A n 38 203 A LYS 204 n 39 LYS 204 A CYS 205 n 40 CYS 205 A PRO 206 n 41 PRO 206 A PHE 207 n 42 PHE 207 A PRO 208 n 43 PRO 208 A SER 209 n 44 SER 209 A ARG 210 n 45 ARG 210 A PRO 211 n 46 PRO 211 A ASP 212 n 47 ASP 212 A ASN 213 n 48 ASN 213 A GLY 214 n 49 GLY 214 A PHE 215 n 50 PHE 215 A VAL 216 n 51 VAL 216 A ASN 217 n 52 ASN 217 A TYR 218 n 53 TYR 218 A PRO 219 n 54 PRO 219 A ALA 220 n 55 ALA 220 A LYS 221 n 56 LYS 221 A PRO 222 n 57 PRO 222 A THR 223 n 58 THR 223 A LEU 224 n 59 LEU 224 A TYR 225 n 60 TYR 225 A TYR 226 n 61 TYR 226 A LYS 227 n 62 LYS 227 A ASP 228 n 63 ASP 228 A LYS 229 n 64 LYS 229 A ALA 230 n 65 ALA 230 A THR 231 n 66 THR 231 A PHE 232 n 67 PHE 232 A GLY 233 n 68 GLY 233 A CYS 234 n 69 CYS 234 A HIS 235 n 70 HIS 235 A ASP 236 n 71 ASP 236 A GLY 237 n 72 GLY 237 A TYR 238 n 73 TYR 238 A SER 239 n 74 SER 239 A LEU 240 n 75 LEU 240 A ASP 241 n 76 ASP 241 A GLY 242 n 77 GLY 242 A PRO 243 n 78 PRO 243 A GLU 244 n 79 GLU 244 A GLU 245 n 80 GLU 245 A ILE 246 n 81 ILE 246 A GLU 247 n 82 GLU 247 A CYS 248 n 83 CYS 248 A THR 249 n 84 THR 249 A LYS 250 n 85 LYS 250 A LEU 251 n 86 LEU 251 A GLY 252 n 87 GLY 252 A ASN 253 n 88 ASN 253 A TRP 254 n 89 TRP 254 A SER 255 n 90 SER 255 A ALA 256 n 91 ALA 256 A MET 257 n 92 MET 257 A PRO 258 n 93 PRO 258 A SER 259 n 94 SER 259 A CYS 260 n 95 CYS 260 A LYS 261 n 96 LYS 261 A ALA 262 n 97 ALA 262 A SER 263 n 98 SER 263 A CYS 264 n 99 CYS 264 A LYS 265 n 100 LYS 265 A VAL 266 n 101 VAL 266 A PRO 267 n 102 PRO 267 A VAL 268 n 103 VAL 268 A LYS 269 n 104 LYS 269 A LYS 270 n 105 LYS 270 A ALA 271 n 106 ALA 271 A THR 272 n 107 THR 272 A VAL 273 n 108 VAL 273 A VAL 274 n 109 VAL 274 A TYR 275 n 110 TYR 275 A GLN 276 n 111 GLN 276 A GLY 277 n 112 GLY 277 A GLU 278 n 113 GLU 278 A ARG 279 n 114 ARG 279 A VAL 280 n 115 VAL 280 A LYS 281 n 116 LYS 281 A ILE 282 n 117 ILE 282 A GLN 283 n 118 GLN 283 A GLU 284 n 119 GLU 284 A LYS 285 n 120 LYS 285 A PHE 286 n 121 PHE 286 A LYS 287 n 122 LYS 287 A ASN 288 n 123 ASN 288 A GLY 289 n 124 GLY 289 A MET 290 n 125 MET 290 A LEU 291 n 126 LEU 291 A HIS 292 n 127 HIS 292 A GLY 293 n 128 GLY 293 A ASP 294 n 129 ASP 294 A LYS 295 n 130 LYS 295 A VAL 296 n 131 VAL 296 A SER 297 n 132 SER 297 A PHE 298 n 133 PHE 298 A PHE 299 n 134 PHE 299 A CYS 300 n 135 CYS 300 A LYS 301 n 136 LYS 301 A ASN 302 n 137 ASN 302 A LYS 303 n 138 LYS 303 A GLU 304 n 139 GLU 304 A LYS 305 n 140 LYS 305 A LYS 306 n 141 LYS 306 A CYS 307 n 142 CYS 307 A SER 308 n 143 SER 308 A TYR 309 n 144 TYR 309 A THR 310 n 145 THR 310 A GLU 311 n 146 GLU 311 A ASP 312 n 147 ASP 312 A ALA 313 n 148 ALA 313 A GLN 314 n 149 GLN 314 A CYS 315 n 150 CYS 315 A ILE 316 n 151 ILE 316 A ASP 317 n 152 ASP 317 A GLY 318 n 153 GLY 318 A THR 319 n 154 THR 319 A ILE 320 n 155 ILE 320 A GLU 321 n 156 GLU 321 A VAL 322 n 157 VAL 322 A PRO 323 n 158 PRO 323 A LYS 324 n 159 LYS 324 A CYS 325 n 160 CYS 325 A PHE 326 n 161 PHE 326 A LYS 327 n 162 LYS 327 A GLU 328 n 163 GLU 328 A HIS 329 n 164 HIS 329 A SER 330 n 165 SER 330 A SER 331 n 166 SER 331 A LEU 332 n 167 LEU 332 A ALA 333 n 168 ALA 333 A PHE 334 n 169 PHE 334 A TRP 335 n 170 TRP 335 A LYS 336 n 171 LYS 336 A THR 337 n 172 THR 337 A ASP 338 n 173 ASP 338 A ALA 339 n 174 ALA 339 A SER 340 n 175 SER 340 A ASP 341 n 176 ASP 341 A VAL 342 n 177 VAL 342 A LYS 343 n 178 LYS 343 A PRO 344 n 179 PRO 344 A CYS 345 n 180 CYS 345 A author_and_software_defined_assembly PISA 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N PHE 215 A N PHE 50 A O GLY 233 A O GLY 68 A N ALA 230 A N ALA 65 A O ILE 246 A O ILE 81 A N ASP 241 A N ASP 76 A O SER 259 A O SER 94 A O VAL 280 A O VAL 115 A N VAL 273 A N VAL 108 A N VAL 274 A N VAL 109 A O SER 297 A O SER 132 A N CYS 300 A N CYS 135 A O TYR 309 A O TYR 144 1 A CG LYS 227 A CG LYS 62 1 Y 1 A CD LYS 227 A CD LYS 62 1 Y 1 A CE LYS 227 A CE LYS 62 1 Y 1 A NZ LYS 227 A NZ LYS 62 1 Y 1 A CG LYS 250 A CG LYS 85 1 Y 1 A CD LYS 250 A CD LYS 85 1 Y 1 A CE LYS 250 A CE LYS 85 1 Y 1 A NZ LYS 250 A NZ LYS 85 1 Y 1 A CG LEU 251 A CG LEU 86 1 Y 1 A CD1 LEU 251 A CD1 LEU 86 1 Y 1 A CD2 LEU 251 A CD2 LEU 86 1 Y 1 A CG GLU 304 A CG GLU 139 1 Y 1 A CD GLU 304 A CD GLU 139 1 Y 1 A OE1 GLU 304 A OE1 GLU 139 1 Y 1 A OE2 GLU 304 A OE2 GLU 139 1 Y 1 A CG LYS 306 A CG LYS 141 1 Y 1 A CD LYS 306 A CD LYS 141 1 Y 1 A CE LYS 306 A CE LYS 141 1 Y 1 A NZ LYS 306 A NZ LYS 141 1 Y 1 A GLN 166 A GLN 1 1 Y 1 A ASP 167 A ASP 2 1 Y 1 A TYR 168 A TYR 3 1 Y 1 A LYS 169 A LYS 4 1 Y 1 A ASP 170 A ASP 5 1 Y 1 A ASP 171 A ASP 6 1 Y 1 A ASP 172 A ASP 7 1 Y 1 A ASP 173 A ASP 8 1 Y 1 A LYS 174 A LYS 9 1 Y 1 A HIS 175 A HIS 10 1 Y 1 A HIS 176 A HIS 11 1 Y 1 A HIS 177 A HIS 12 1 Y 1 A HIS 178 A HIS 13 1 Y 1 A HIS 179 A HIS 14 1 Y 1 A HIS 180 A HIS 15 1 Y 1 A HIS 181 A HIS 16 1 Y 1 A HIS 182 A HIS 17 1 Y 1 A HIS 183 A HIS 18 1 Y 1 A HIS 184 A HIS 19 1 Y 1 A GLU 185 A GLU 20 1 Y 1 A ASN 186 A ASN 21 1 Y 1 A LEU 187 A LEU 22 1 Y 1 A TYR 188 A TYR 23 1 Y 1 A PHE 189 A PHE 24 1 Y 1 A GLN 190 A GLN 25 1 Y 1 A SER 191 A SER 26 1 Y 1 A HIS 192 A HIS 27 1 Y 1 A VAL 193 A VAL 28 1 Y 1 A LEU 194 A LEU 29 1 Y 1 A PHE 195 A PHE 30 1 Y 1 A ILE 196 A ILE 31 1 Y 1 A PHE 197 A PHE 32 1 Y 1 A PRO 198 A PRO 33 1 Y 1 A ARG 199 A ARG 34 1 Y 1 A THR 200 A THR 35 1 Y 1 A SER 201 A SER 36 1 Y 1 A GLY 202 A GLY 37 1 Y 1 A VAL 203 A VAL 38 1 Y 1 A TYR 226 164.24 142.69 1 A LYS 227 62.17 -8.04 1 A SER 255 -58.38 -6.65 1 A ALA 256 179.10 178.41 1 A MET 257 -153.47 86.61 110.960 53.8027 25.750 0.2496 0.2066 0.2086 3.0 20.0 331 6987 6984 99.95 0.2260 0.1818 1.000 1.000 0.8611 0.4440 0.3104 Random 1 THROUGHOUT 0 MOLECULAR REPLACEMENT 1C1Z Engh & Huber 3.0 20.0 0 1112 15 0 1097 0.010 1.370 7.206 37.724 0.071 0.005 22.262 23.261 0.421 0.285 3.076 24 492 100.00 70.3 3.0 50.0 4JHS 7030 7030 -3 -3 0.180 1 16.900 21.500 100.000 0.819 3.000 3.160 1.000 21340 999 0.819 1 21.400 100.000 0.514 3.160 3.350 1.500 20768 951 0.514 1 21.800 100.000 0.344 3.350 3.590 2.300 19731 892 0.344 1 22.100 100.000 0.233 3.590 3.870 3.300 18342 825 0.233 1 22.200 100.000 0.150 3.870 4.240 5.000 17162 777 0.150 1 22.100 100.000 0.119 4.240 4.740 6.200 15184 702 0.119 1 21.600 100.000 0.120 4.740 5.480 6.100 13456 639 0.120 1 21.100 100.000 0.114 5.480 6.710 6.100 10528 541 0.114 1 19.500 100.000 0.073 6.710 9.490 9.000 9214 433 0.073 1 21.300 100.000 0.059 9.490 49.898 9.700 5088 271 0.059 1 18.800 99.400 data scaling Phil R. Evans pre@mrc-lmb.cam.ac.uk 2011/05/18 Fortran_77 http://www.ccp4.ac.uk/dist/html/scala.html SCALA other 3.3.20 refinement Garib N. Murshudov garib@ysbl.york.ac.uk Fortran_77 http://www.ccp4.ac.uk/dist/html/refmac5.html REFMAC program data extraction PDB deposit@deposit.rcsb.org April 22, 2011 C++ http://sw-tools.pdb.org/apps/PDB_EXTRACT/ PDB_EXTRACT package 3.11 data collection MAR345 data reduction MOSFLM phasing MOLREP model building Coot Crystal structure of a C-terminal two domain fragment of human beta-2-glycoprotein 1 1 N N 2 N N 2 N N 2 N N A ILE 282 A ILE 117 HELX_P A PHE 286 A PHE 121 1 1 5 A ASP 338 A ASP 173 HELX_P A VAL 342 A VAL 177 5 2 5 disulf 2.040 A CYS 205 A SG CYS 40 1_555 A CYS 248 A SG CYS 83 1_555 disulf 2.071 A CYS 234 A SG CYS 69 1_555 A CYS 260 A SG CYS 95 1_555 disulf 2.053 A CYS 264 A SG CYS 99 1_555 A CYS 315 A SG CYS 150 1_555 disulf 2.092 A CYS 300 A SG CYS 135 1_555 A CYS 325 A SG CYS 160 1_555 disulf 2.047 A CYS 307 A SG CYS 142 1_555 A CYS 345 A SG CYS 180 1_555 SIGNALING PROTEIN STRUCTURAL GENOMICS, GLYCOPROTEIN, PSI-Biology, New York Structural Genomics Research Consortium, NYSGRC, Atoms-to-Animals: The Immune Function Network, IFN, SIGNALING PROTEIN APOH_HUMAN UNP 1 203 P02749 VKCPFPSRPDNGFVNYPAKPTLYYKDKATFGCHDGYSLDGPEEIECTKLGNWSAMPSCKASCKVPVKKATVVYQGERVKI QEKFKNGMLHGDKVSFFCKNKEKKCSYTEDAQCIDGTIEVPKCFKEHSSLAFWKTDASDVKPC 203 345 4JHS 203 345 P02749 A 1 38 180 1 expression tag GLN 166 4JHS A P02749 UNP 1 1 expression tag ASP 167 4JHS A P02749 UNP 2 1 expression tag TYR 168 4JHS A P02749 UNP 3 1 expression tag LYS 169 4JHS A P02749 UNP 4 1 expression tag ASP 170 4JHS A P02749 UNP 5 1 expression tag ASP 171 4JHS A P02749 UNP 6 1 expression tag ASP 172 4JHS A P02749 UNP 7 1 expression tag ASP 173 4JHS A P02749 UNP 8 1 expression tag LYS 174 4JHS A P02749 UNP 9 1 expression tag HIS 175 4JHS A P02749 UNP 10 1 expression tag HIS 176 4JHS A P02749 UNP 11 1 expression tag HIS 177 4JHS A P02749 UNP 12 1 expression tag HIS 178 4JHS A P02749 UNP 13 1 expression tag HIS 179 4JHS A P02749 UNP 14 1 expression tag HIS 180 4JHS A P02749 UNP 15 1 expression tag HIS 181 4JHS A P02749 UNP 16 1 expression tag HIS 182 4JHS A P02749 UNP 17 1 expression tag HIS 183 4JHS A P02749 UNP 18 1 expression tag HIS 184 4JHS A P02749 UNP 19 1 expression tag GLU 185 4JHS A P02749 UNP 20 1 expression tag ASN 186 4JHS A P02749 UNP 21 1 expression tag LEU 187 4JHS A P02749 UNP 22 1 expression tag TYR 188 4JHS A P02749 UNP 23 1 expression tag PHE 189 4JHS A P02749 UNP 24 1 expression tag GLN 190 4JHS A P02749 UNP 25 1 expression tag SER 191 4JHS A P02749 UNP 26 1 expression tag HIS 192 4JHS A P02749 UNP 27 1 expression tag VAL 193 4JHS A P02749 UNP 28 1 expression tag LEU 194 4JHS A P02749 UNP 29 1 expression tag PHE 195 4JHS A P02749 UNP 30 1 expression tag ILE 196 4JHS A P02749 UNP 31 1 expression tag PHE 197 4JHS A P02749 UNP 32 1 expression tag PRO 198 4JHS A P02749 UNP 33 1 expression tag ARG 199 4JHS A P02749 UNP 34 1 expression tag THR 200 4JHS A P02749 UNP 35 1 expression tag SER 201 4JHS A P02749 UNP 36 1 expression tag GLY 202 4JHS A P02749 UNP 37 3 2 4 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A GLY 214 A GLY 49 A ASN 217 A ASN 52 A LYS 229 A LYS 64 A CYS 234 A CYS 69 A GLU 245 A GLU 80 A GLU 247 A GLU 82 A TYR 238 A TYR 73 A ASP 241 A ASP 76 A SER 259 A SER 94 A ALA 262 A ALA 97 A GLU 278 A GLU 113 A LYS 281 A LYS 116 A THR 272 A THR 107 A TYR 275 A TYR 110 A LYS 295 A LYS 130 A ASN 302 A ASN 137 A CYS 307 A CYS 142 A GLN 314 A GLN 149 BINDING SITE FOR RESIDUE SO4 A 401 A SO4 401 Software 4 BINDING SITE FOR RESIDUE SO4 A 402 A SO4 402 Software 5 BINDING SITE FOR RESIDUE SO4 A 403 A SO4 403 Software 3 A LYS 301 A LYS 136 4 1_555 A LYS 303 A LYS 138 4 1_555 A HIS 329 A HIS 164 4 1_555 A LYS 336 A LYS 171 4 1_555 A LYS 301 A LYS 136 5 1_555 A LYS 303 A LYS 138 5 1_555 A TRP 335 A TRP 170 5 1_555 A LYS 336 A LYS 171 5 1_555 A THR 337 A THR 172 5 1_555 A ARG 210 A ARG 45 3 1_555 A ASN 213 A ASN 48 3 1_555 A HIS 235 A HIS 70 3 1_555 214 I 41 3 2