0.023500 0.000000 0.008193 0.000000 0.019009 0.000000 0.000000 0.000000 0.016637 0.00000 0.00000 0.00000 Mielecki, M. Krawiec, K. Kiburu, I. Grzelak, K. Wlodzimierz, Z. Kierdaszuk, B. Kowa, K. Fokt, I. Szymanski, S. Piotr, S. Szeja, W. Priebe, W. Lesyng, B. LaRonde-LeBlanc, N. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 2 90.00 109.22 90.00 42.553 52.608 63.654 C16 H13 N3 O 263.294 (2E)-N-benzyl-2-cyano-3-(pyridin-4-yl)prop-2-enamide non-polymer C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N C N 2 N N N 3 N C Y 4 N C Y 5 N C Y 6 N C Y 7 N C Y 8 N C Y 9 N C Y 10 N C N 11 N C N 12 N N N 13 N C N 14 N C Y 15 N C Y 16 N C Y 17 N N Y 18 N C Y 19 N C N 20 N O N 21 N H N 22 N H N 23 N H N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N N N 35 S C N 36 N C N 37 N O N 38 N C N 39 N O N 40 N H N 41 N H N 42 N H N 43 N H N 44 N H N 45 N H N 46 N H N 47 N N N 48 S C N 49 N C N 50 N O N 51 N C N 52 N C N 53 N C N 54 N N N 55 N C N 56 N N N 57 N N N 58 N O N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 S C N 76 N C N 77 N O N 78 N C N 79 N C N 80 N O N 81 N N N 82 N O N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N H N 90 N H N 91 N N N 92 S C N 93 N C N 94 N O N 95 N C N 96 N C N 97 N O N 98 N O N 99 N O N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N N N 108 S C N 109 N C N 110 N O N 111 N C N 112 N C N 113 N C N 114 N O N 115 N N N 116 N O N 117 N H N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 S C N 129 N C N 130 N O N 131 N C N 132 N C N 133 N C N 134 N O N 135 N O N 136 N O N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N H N 145 N H N 146 N N N 147 N C N 148 N C N 149 N O N 150 N O N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N N N 157 S C N 158 N C N 159 N O N 160 N C Y 161 N C Y 162 N N Y 163 N C Y 164 N C Y 165 N N N 166 N O N 167 N H N 168 N H N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N O N 178 N H N 179 N H N 180 N N N 181 S C N 182 N C N 183 N O N 184 S C N 185 N C N 186 N C N 187 N C N 188 N O N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N N N 203 S C N 204 N C N 205 N O N 206 N C N 207 N C N 208 N C N 209 N C N 210 N O N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N N N 225 S C N 226 N C N 227 N O N 228 N C N 229 N C N 230 N C N 231 N C N 232 N N N 233 N O N 234 N H N 235 N H N 236 N H N 237 N H N 238 N H N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N N N 250 S C N 251 N C N 252 N O N 253 N C N 254 N C N 255 N S N 256 N C N 257 N O N 258 N H N 259 N H N 260 N H N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N N N 270 S C N 271 N C N 272 N O N 273 N C Y 274 N C Y 275 N C Y 276 N C Y 277 N C Y 278 N C Y 279 N C N 280 N O N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N H N 292 N N N 293 S C N 294 N C N 295 N O N 296 N C N 297 N C N 298 N C N 299 N O N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N H N 306 N H N 307 N H N 308 N H N 309 N N N 310 S C N 311 N C N 312 N O N 313 N C N 314 N O N 315 N O N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N N N 324 S C N 325 N C N 326 N O N 327 R C N 328 N O N 329 N C N 330 N O N 331 N H N 332 N H N 333 N H N 334 N H N 335 N H N 336 N H N 337 N H N 338 N H N 339 N H N 340 N N N 341 S C N 342 N C N 343 N O N 344 N C Y 345 N C Y 346 N C Y 347 N C Y 348 N N Y 349 N C Y 350 N C Y 351 N C Y 352 N C Y 353 N C N 354 N O N 355 N H N 356 N H N 357 N H N 358 N H N 359 N H N 360 N H N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N N N 368 S C N 369 N C N 370 N O N 371 N C Y 372 N C Y 373 N C Y 374 N C Y 375 N C Y 376 N C Y 377 N C N 378 N O N 379 N O N 380 N H N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N N N 392 S C N 393 N C N 394 N O N 395 N C N 396 N C N 397 N C N 398 N O N 399 N H N 400 N H N 401 N H N 402 N H N 403 N H N 404 N H N 405 N H N 406 N H N 407 N H N 408 N H N 409 N H Y 1 N doub Y 2 N sing Y 3 N sing Y 4 N doub Y 5 N sing Y 6 N doub N 7 N sing N 8 E doub N 9 N doub N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N trip Y 16 N doub Y 17 N sing Y 18 N sing Y 19 N doub Y 20 N doub Y 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N sing N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N doub N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N doub N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N sing N 67 N doub N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N doub N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N doub N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N doub N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N doub N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N doub N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N doub N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N doub N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N doub N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N doub N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N doub N 157 N sing N 158 N sing N 159 N sing N 160 N sing Y 161 N sing Y 162 N doub Y 163 N doub N 164 N sing Y 165 N sing N 166 N sing Y 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N doub N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N doub N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N doub N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N doub N 265 N sing N 266 N sing N 267 N sing N 268 N sing Y 269 N doub Y 270 N sing Y 271 N sing N 272 N sing Y 273 N doub N 274 N sing Y 275 N doub N 276 N sing Y 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N doub N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N doub N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N doub N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N doub N 334 N sing N 335 N sing N 336 N sing N 337 N sing Y 338 N doub Y 339 N sing Y 340 N sing N 341 N sing Y 342 N doub Y 343 N sing Y 344 N sing N 345 N sing Y 346 N sing Y 347 N doub N 348 N sing Y 349 N doub N 350 N sing Y 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N doub N 362 N sing N 363 N sing N 364 N sing N 365 N sing Y 366 N doub Y 367 N sing Y 368 N sing N 369 N sing Y 370 N doub N 371 N sing Y 372 N doub N 373 N sing Y 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N doub N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N sing NE Biochim.Biophys.Acta BBACAQ 0113 0006-3002 1834 1292 1301 10.1016/j.bbapap.2013.03.012 23523885 Development of novel molecular probes of the Rio1 atypical protein kinase. 2013 10.2210/pdb4jin/pdb pdb_00004jin 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD ADSC QUANTUM 315 SINGLE WAVELENGTH M x-ray 1 1.0000 1.0 24-ID-E APS 1.0000 SYNCHROTRON APS BEAMLINE 24-ID-E 30137.660 RIO-type serine/threonine-protein kinase Rio1 2.7.11.1 1 man polymer 263.294 (2E)-N-benzyl-2-cyano-3-(pyridin-4-yl)prop-2-enamide 1 syn non-polymer 18.015 water 87 nat water AfRio1 no no MKDLKKIESYLDKLRIKEKDGEERKIYAEVLDGRTLKTLYKLSAKGYITAMGGVISTGKEANVFYADGVFDGKPVAMAVK IYRIETSEFDKMDEYLYGDERFDMRRISPKEKVFIWTEKEFRNLERAKEAGVSVPQPYTYMKNVLLMEFIGEDELPAPTL VELGRELKELDVEGIFNDVVENVKRLYQEAELVHADLSEYNIMYIDKVYFIDMGQAVTLRHPMAESYLERDVRNIIRFFS KYGVKADFEEMLKEVKGE MKDLKKIESYLDKLRIKEKDGEERKIYAEVLDGRTLKTLYKLSAKGYITAMGGVISTGKEANVFYADGVFDGKPVAMAVK IYRIETSEFDKMDEYLYGDERFDMRRISPKEKVFIWTEKEFRNLERAKEAGVSVPQPYTYMKNVLLMEFIGEDELPAPTL VELGRELKELDVEGIFNDVVENVKRLYQEAELVHADLSEYNIMYIDKVYFIDMGQAVTLRHPMAESYLERDVRNIIRFFS KYGVKADFEEMLKEVKGE A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126 sample AF_1804, rio1 224325 Archaeoglobus fulgidus 562 Escherichia coli Rosetta (TM) DE3 pLysS Plasmid pDEST527 1 2.23 44.90 VAPOR DIFFUSION 8.0 0.1 M MgCl2, 20% PEG 3350, 0.1 M Tris, pH 8.0, VAPOR DIFFUSION, temperature 293K 293 chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model struct_site repository Initial release Database references Data collection Database references Derived calculations Refinement description 1 0 2013-04-24 1 1 2013-07-10 1 2 2023-09-20 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id The same protein in complex with Adenosine. The same protein in complex with ATP and Mn2+ RCSB Y RCSB 2013-03-06 REL REL 1L7 (2E)-N-benzyl-2-cyano-3-(pyridin-4-yl)prop-2-enamide HOH water 1ZTF PDB experimental model LIG 1 2 1L7 1L7 301 A HOH 1 3 HOH HOH 401 A HOH 2 3 HOH HOH 402 A HOH 3 3 HOH HOH 403 A HOH 4 3 HOH HOH 404 A HOH 5 3 HOH HOH 405 A HOH 6 3 HOH HOH 406 A HOH 7 3 HOH HOH 407 A HOH 8 3 HOH HOH 408 A HOH 9 3 HOH HOH 409 A HOH 10 3 HOH HOH 410 A HOH 11 3 HOH HOH 411 A HOH 12 3 HOH HOH 412 A HOH 13 3 HOH HOH 413 A HOH 14 3 HOH HOH 414 A HOH 15 3 HOH HOH 415 A HOH 16 3 HOH HOH 416 A HOH 17 3 HOH HOH 417 A HOH 18 3 HOH HOH 418 A HOH 19 3 HOH HOH 419 A HOH 20 3 HOH HOH 420 A HOH 21 3 HOH HOH 421 A HOH 22 3 HOH HOH 422 A HOH 23 3 HOH HOH 423 A HOH 24 3 HOH HOH 424 A HOH 25 3 HOH HOH 425 A HOH 26 3 HOH HOH 426 A HOH 27 3 HOH HOH 427 A HOH 28 3 HOH HOH 428 A HOH 29 3 HOH HOH 429 A HOH 30 3 HOH HOH 430 A HOH 31 3 HOH HOH 431 A HOH 32 3 HOH HOH 432 A HOH 33 3 HOH HOH 433 A HOH 34 3 HOH HOH 434 A HOH 35 3 HOH HOH 435 A HOH 36 3 HOH HOH 436 A HOH 37 3 HOH HOH 437 A HOH 38 3 HOH HOH 438 A HOH 39 3 HOH HOH 439 A HOH 40 3 HOH HOH 440 A HOH 41 3 HOH HOH 441 A HOH 42 3 HOH HOH 442 A HOH 43 3 HOH HOH 443 A HOH 44 3 HOH HOH 444 A HOH 45 3 HOH HOH 445 A HOH 46 3 HOH HOH 446 A HOH 47 3 HOH HOH 447 A HOH 48 3 HOH HOH 448 A HOH 49 3 HOH HOH 449 A HOH 50 3 HOH HOH 450 A HOH 51 3 HOH HOH 451 A HOH 52 3 HOH HOH 452 A HOH 53 3 HOH HOH 453 A HOH 54 3 HOH HOH 454 A HOH 55 3 HOH HOH 455 A HOH 56 3 HOH HOH 456 A HOH 57 3 HOH HOH 457 A HOH 58 3 HOH HOH 458 A HOH 59 3 HOH HOH 459 A HOH 60 3 HOH HOH 460 A HOH 61 3 HOH HOH 461 A HOH 62 3 HOH HOH 462 A HOH 63 3 HOH HOH 463 A HOH 64 3 HOH HOH 464 A HOH 65 3 HOH HOH 465 A HOH 66 3 HOH HOH 466 A HOH 67 3 HOH HOH 467 A HOH 68 3 HOH HOH 468 A HOH 69 3 HOH HOH 469 A HOH 70 3 HOH HOH 470 A HOH 71 3 HOH HOH 471 A HOH 72 3 HOH HOH 472 A HOH 73 3 HOH HOH 473 A HOH 74 3 HOH HOH 474 A HOH 75 3 HOH HOH 475 A HOH 76 3 HOH HOH 476 A HOH 77 3 HOH HOH 477 A HOH 78 3 HOH HOH 478 A HOH 79 3 HOH HOH 479 A HOH 80 3 HOH HOH 480 A HOH 81 3 HOH HOH 481 A HOH 82 3 HOH HOH 482 A HOH 83 3 HOH HOH 483 A HOH 84 3 HOH HOH 484 A HOH 85 3 HOH HOH 485 A HOH 86 3 HOH HOH 486 A HOH 87 3 HOH HOH 487 A n 1 1 A n 2 2 A n 3 3 A n 4 4 A LYS 5 n 5 LYS 5 A LYS 6 n 6 LYS 6 A ILE 7 n 7 ILE 7 A GLU 8 n 8 GLU 8 A SER 9 n 9 SER 9 A TYR 10 n 10 TYR 10 A LEU 11 n 11 LEU 11 A ASP 12 n 12 ASP 12 A LYS 13 n 13 LYS 13 A LEU 14 n 14 LEU 14 A ARG 15 n 15 ARG 15 A ILE 16 n 16 ILE 16 A LYS 17 n 17 LYS 17 A GLU 18 n 18 GLU 18 A LYS 19 n 19 LYS 19 A ASP 20 n 20 ASP 20 A GLY 21 n 21 GLY 21 A GLU 22 n 22 GLU 22 A GLU 23 n 23 GLU 23 A ARG 24 n 24 ARG 24 A LYS 25 n 25 LYS 25 A ILE 26 n 26 ILE 26 A TYR 27 n 27 TYR 27 A ALA 28 n 28 ALA 28 A GLU 29 n 29 GLU 29 A VAL 30 n 30 VAL 30 A LEU 31 n 31 LEU 31 A ASP 32 n 32 ASP 32 A GLY 33 n 33 GLY 33 A ARG 34 n 34 ARG 34 A THR 35 n 35 THR 35 A LEU 36 n 36 LEU 36 A LYS 37 n 37 LYS 37 A THR 38 n 38 THR 38 A LEU 39 n 39 LEU 39 A TYR 40 n 40 TYR 40 A LYS 41 n 41 LYS 41 A LEU 42 n 42 LEU 42 A SER 43 n 43 SER 43 A ALA 44 n 44 ALA 44 A LYS 45 n 45 LYS 45 A GLY 46 n 46 GLY 46 A TYR 47 n 47 TYR 47 A ILE 48 n 48 ILE 48 A THR 49 n 49 THR 49 A ALA 50 n 50 ALA 50 A MET 51 n 51 MET 51 A GLY 52 n 52 GLY 52 A GLY 53 n 53 GLY 53 A VAL 54 n 54 VAL 54 A ILE 55 n 55 ILE 55 A SER 56 n 56 SER 56 A THR 57 n 57 THR 57 A GLY 58 n 58 GLY 58 A LYS 59 n 59 LYS 59 A GLU 60 n 60 GLU 60 A ALA 61 n 61 ALA 61 A ASN 62 n 62 ASN 62 A VAL 63 n 63 VAL 63 A PHE 64 n 64 PHE 64 A TYR 65 n 65 TYR 65 A ALA 66 n 66 ALA 66 A ASP 67 n 67 ASP 67 A GLY 68 n 68 GLY 68 A VAL 69 n 69 VAL 69 A PHE 70 n 70 PHE 70 A ASP 71 n 71 ASP 71 A GLY 72 n 72 GLY 72 A LYS 73 n 73 LYS 73 A PRO 74 n 74 PRO 74 A VAL 75 n 75 VAL 75 A ALA 76 n 76 ALA 76 A MET 77 n 77 MET 77 A ALA 78 n 78 ALA 78 A VAL 79 n 79 VAL 79 A LYS 80 n 80 LYS 80 A ILE 81 n 81 ILE 81 A TYR 82 n 82 TYR 82 A ARG 83 n 83 ARG 83 A ILE 84 n 84 ILE 84 A GLU 85 n 85 GLU 85 A THR 86 n 86 THR 86 A SER 87 n 87 SER 87 A GLU 88 n 88 GLU 88 A PHE 89 n 89 PHE 89 A ASP 90 n 90 ASP 90 A LYS 91 n 91 LYS 91 A MET 92 n 92 MET 92 A ASP 93 n 93 ASP 93 A GLU 94 n 94 GLU 94 A TYR 95 n 95 TYR 95 A LEU 96 n 96 LEU 96 A TYR 97 n 97 TYR 97 A GLY 98 n 98 GLY 98 A ASP 99 n 99 ASP 99 A GLU 100 n 100 GLU 100 A ARG 101 n 101 ARG 101 A PHE 102 n 102 PHE 102 A ASP 103 n 103 ASP 103 A MET 104 n 104 MET 104 A ILE 105 n 105 ARG 105 A ARG 106 n 106 ARG 106 A ILE 107 n 107 ILE 107 A SER 108 n 108 SER 108 A PRO 109 n 109 PRO 109 A LYS 110 n 110 LYS 110 A GLU 111 n 111 GLU 111 A LYS 112 n 112 LYS 112 A VAL 113 n 113 VAL 113 A PHE 114 n 114 PHE 114 A ILE 115 n 115 ILE 115 A TRP 116 n 116 TRP 116 A THR 117 n 117 THR 117 A GLU 118 n 118 GLU 118 A LYS 119 n 119 LYS 119 A GLU 120 n 120 GLU 120 A PHE 121 n 121 PHE 121 A ARG 122 n 122 ARG 122 A ASN 123 n 123 ASN 123 A LEU 124 n 124 LEU 124 A GLU 125 n 125 GLU 125 A ARG 126 n 126 ARG 126 A ALA 127 n 127 ALA 127 A LYS 128 n 128 LYS 128 A GLU 129 n 129 GLU 129 A ALA 130 n 130 ALA 130 A GLY 131 n 131 GLY 131 A VAL 132 n 132 VAL 132 A SER 133 n 133 SER 133 A VAL 134 n 134 VAL 134 A PRO 135 n 135 PRO 135 A GLN 136 n 136 GLN 136 A PRO 137 n 137 PRO 137 A TYR 138 n 138 TYR 138 A THR 139 n 139 THR 139 A TYR 140 n 140 TYR 140 A MET 141 n 141 MET 141 A LYS 142 n 142 LYS 142 A ASN 143 n 143 ASN 143 A VAL 144 n 144 VAL 144 A LEU 145 n 145 LEU 145 A LEU 146 n 146 LEU 146 A MET 147 n 147 MET 147 A GLU 148 n 148 GLU 148 A PHE 149 n 149 PHE 149 A ILE 150 n 150 ILE 150 A GLY 151 n 151 GLY 151 A GLU 152 n 152 GLU 152 A ASP 153 n 153 ASP 153 A GLU 154 n 154 GLU 154 A LEU 155 n 155 LEU 155 A PRO 156 n 156 PRO 156 A ALA 157 n 157 ALA 157 A PRO 158 n 158 PRO 158 A THR 159 n 159 THR 159 A LEU 160 n 160 LEU 160 A VAL 161 n 161 VAL 161 A GLU 162 n 162 GLU 162 A LEU 163 n 163 LEU 163 A GLY 164 n 164 GLY 164 A ARG 165 n 165 ARG 165 A GLU 166 n 166 GLU 166 A LEU 167 n 167 LEU 167 A LYS 168 n 168 LYS 168 A GLU 169 n 169 GLU 169 A LEU 170 n 170 LEU 170 A ASP 171 n 171 ASP 171 A VAL 172 n 172 VAL 172 A GLU 173 n 173 GLU 173 A GLY 174 n 174 GLY 174 A ILE 175 n 175 ILE 175 A PHE 176 n 176 PHE 176 A ASN 177 n 177 ASN 177 A ASP 178 n 178 ASP 178 A VAL 179 n 179 VAL 179 A VAL 180 n 180 VAL 180 A GLU 181 n 181 GLU 181 A ASN 182 n 182 ASN 182 A VAL 183 n 183 VAL 183 A LYS 184 n 184 LYS 184 A ARG 185 n 185 ARG 185 A LEU 186 n 186 LEU 186 A TYR 187 n 187 TYR 187 A GLN 188 n 188 GLN 188 A GLU 189 n 189 GLU 189 A ALA 190 n 190 ALA 190 A GLU 191 n 191 GLU 191 A LEU 192 n 192 LEU 192 A VAL 193 n 193 VAL 193 A HIS 194 n 194 HIS 194 A ALA 195 n 195 ALA 195 A ASP 196 n 196 ASP 196 A LEU 197 n 197 LEU 197 A SER 198 n 198 SER 198 A GLU 199 n 199 GLU 199 A TYR 200 n 200 TYR 200 A ASN 201 n 201 ASN 201 A ILE 202 n 202 ILE 202 A MET 203 n 203 MET 203 A TYR 204 n 204 TYR 204 A ILE 205 n 205 ILE 205 A ASP 206 n 206 ASP 206 A LYS 207 n 207 LYS 207 A VAL 208 n 208 VAL 208 A TYR 209 n 209 TYR 209 A PHE 210 n 210 PHE 210 A ILE 211 n 211 ILE 211 A ASP 212 n 212 ASP 212 A MET 213 n 213 MET 213 A GLY 214 n 214 GLY 214 A GLN 215 n 215 GLN 215 A ALA 216 n 216 ALA 216 A VAL 217 n 217 VAL 217 A THR 218 n 218 THR 218 A LEU 219 n 219 LEU 219 A ARG 220 n 220 ARG 220 A HIS 221 n 221 HIS 221 A PRO 222 n 222 PRO 222 A MET 223 n 223 MET 223 A ALA 224 n 224 ALA 224 A GLU 225 n 225 GLU 225 A SER 226 n 226 SER 226 A TYR 227 n 227 TYR 227 A LEU 228 n 228 LEU 228 A GLU 229 n 229 GLU 229 A ARG 230 n 230 ARG 230 A ASP 231 n 231 ASP 231 A VAL 232 n 232 VAL 232 A ARG 233 n 233 ARG 233 A ASN 234 n 234 ASN 234 A ILE 235 n 235 ILE 235 A ILE 236 n 236 ILE 236 A ARG 237 n 237 ARG 237 A PHE 238 n 238 PHE 238 A PHE 239 n 239 PHE 239 A SER 240 n 240 SER 240 A LYS 241 n 241 LYS 241 A TYR 242 n 242 TYR 242 A GLY 243 n 243 GLY 243 A VAL 244 n 244 VAL 244 A LYS 245 n 245 LYS 245 A ALA 246 n 246 ALA 246 A ASP 247 n 247 ASP 247 A PHE 248 n 248 PHE 248 A GLU 249 n 249 GLU 249 A GLU 250 n 250 GLU 250 A MET 251 n 251 MET 251 A LEU 252 n 252 LEU 252 A LYS 253 n 253 LYS 253 A GLU 254 n 254 GLU 254 A VAL 255 n 255 VAL 255 A LYS 256 n 256 LYS 256 A GLY 257 n 257 GLY 257 A GLU 258 n 258 GLU 258 A 0.5768 0.2439 -0.1239 0.5513 -0.6438 0.7668 -0.0543 0.0363 -0.0778 -0.1772 0.1484 -0.0923 0.3071 0.1201 0.0000 0.4169 -0.0257 -0.0177 0.3556 -0.0254 0.4170 refined 18.9470 6.1087 -1.6973 X-RAY DIFFRACTION 0.2105 0.1322 -0.0563 0.0782 -0.0204 0.5746 0.2352 0.4163 0.1694 0.0280 -0.2615 0.4815 -0.4654 -0.9562 0.0139 0.4841 0.0140 -0.0584 0.6713 -0.0218 0.5824 refined -4.6712 9.1067 5.0502 X-RAY DIFFRACTION 2.5358 0.4874 -0.9047 1.1697 -0.0076 1.2509 -0.1343 -0.0002 -0.0778 0.2221 0.0065 -0.0984 0.1079 0.0326 0.0000 0.3918 -0.0062 0.0065 0.3628 0.0027 0.3173 refined 8.0656 -1.3548 15.1346 X-RAY DIFFRACTION 0.7082 -0.2420 0.2462 0.3975 0.3257 0.5937 -0.1926 -0.1217 -0.4304 0.3239 0.0061 0.4051 0.2195 -0.1309 0.0000 0.4897 -0.0121 0.1163 0.4462 0.0315 0.5875 refined -0.7910 -8.4576 19.9627 X-RAY DIFFRACTION X-RAY DIFFRACTION 1 chain 'A' and (resid 5 through 82 ) X-RAY DIFFRACTION 2 chain 'A' and (resid 83 through 108 ) X-RAY DIFFRACTION 3 chain 'A' and (resid 109 through 201 ) X-RAY DIFFRACTION 4 chain 'A' and (resid 202 through 258 ) author_and_software_defined_assembly PISA 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N GLY 52 A N GLY 52 A O TYR 65 A O TYR 65 A N ASN 62 A N ASN 62 A O ILE 81 A O ILE 81 A N LYS 80 A N LYS 80 A O LEU 145 A O LEU 145 A O LEU 146 A O LEU 146 A N THR 139 A N THR 139 A N GLU 152 A N GLU 152 A O LEU 155 A O LEU 155 A N VAL 193 A N VAL 193 A O VAL 217 A O VAL 217 A N MET 203 A N MET 203 A O TYR 209 A O TYR 209 1 A CG ARG 15 A CG ARG 15 1 Y 1 A CD ARG 15 A CD ARG 15 1 Y 1 A NE ARG 15 A NE ARG 15 1 Y 1 A CZ ARG 15 A CZ ARG 15 1 Y 1 A NH1 ARG 15 A NH1 ARG 15 1 Y 1 A NH2 ARG 15 A NH2 ARG 15 1 Y 1 A CG LYS 59 A CG LYS 59 1 Y 1 A CD LYS 59 A CD LYS 59 1 Y 1 A CE LYS 59 A CE LYS 59 1 Y 1 A NZ LYS 59 A NZ LYS 59 1 Y 1 A CG GLU 85 A CG GLU 85 1 Y 1 A CD GLU 85 A CD GLU 85 1 Y 1 A OE1 GLU 85 A OE1 GLU 85 1 Y 1 A OE2 GLU 85 A OE2 GLU 85 1 Y 1 A CG GLU 88 A CG GLU 88 1 Y 1 A CD GLU 88 A CD GLU 88 1 Y 1 A OE1 GLU 88 A OE1 GLU 88 1 Y 1 A OE2 GLU 88 A OE2 GLU 88 1 Y 1 A CG PHE 89 A CG PHE 89 1 Y 1 A CD1 PHE 89 A CD1 PHE 89 1 Y 1 A CD2 PHE 89 A CD2 PHE 89 1 Y 1 A CE1 PHE 89 A CE1 PHE 89 1 Y 1 A CE2 PHE 89 A CE2 PHE 89 1 Y 1 A CZ PHE 89 A CZ PHE 89 1 Y 1 A NE ARG 105 A NE ARG 105 1 Y 1 A CZ ARG 105 A CZ ARG 105 1 Y 1 A NH1 ARG 105 A NH1 ARG 105 1 Y 1 A NH2 ARG 105 A NH2 ARG 105 1 Y 1 A CG LYS 245 A CG LYS 245 1 Y 1 A CD LYS 245 A CD LYS 245 1 Y 1 A CE LYS 245 A CE LYS 245 1 Y 1 A NZ LYS 245 A NZ LYS 245 1 Y 1 A MET 1 A MET 1 1 Y 1 A LYS 2 A LYS 2 1 Y 1 A ASP 3 A ASP 3 1 Y 1 A LEU 4 A LEU 4 1 Y 1 A A C06 O 1L7 HOH 301 469 2.02 1 A A CG O GLN HOH 136 482 2.07 1 A A O NH1 GLY ARG 58 83 2.13 1 A A NZ O LYS HOH 110 449 2.10 1_555 2_555 1 A ASP 20 -94.76 -159.73 1 A PRO 109 -49.54 -14.65 1 A TYR 138 -105.09 -60.78 1 A LYS 142 51.30 -124.35 1 A ASP 171 61.07 75.04 1 A ASP 196 -155.08 70.92 1 A ILE 205 -110.38 -75.82 1 A GLN 215 -91.24 51.59 53.1 -3.5863 -0.0000 2.4565 -7.0564 -0.0000 10.6427 0.2408 0.1788 0.1817 2.095 29.249 755 15780 15211 4.96 96.40 0.27 1 1.37 MOLECULAR REPLACEMENT 28.22 0.90 1.11 1ZTF ML FLAT BULK SOLVENT MODEL 0.30 2.095 29.249 87 2158 20 0 2051 0.008 2110 1.064 2836 14.614 812 0.070 306 0.004 364 0.2838 0.2246 2.2570 150 2615 88.00 0.2992 0.2194 2.4840 138 2832 95.00 0.2982 0.2145 2.8432 166 2964 99.00 0.2930 0.1995 3.5811 155 2989 100.00 0.1879 0.1517 29.2519 146 3056 100.00 46.37 2.095 29.25 4JIN 15780 2 0.0 0.073 1 19.8 3.2 96.39 2.10 2.26 0.329 1 2.6 87.9 data collection ADSC Quantum model building PHENIX (phenix.automr) refinement PHENIX (phenix.refine: 1.6_289) data reduction HKL-2000 data scaling HKL-2000 phasing PHENIX X-ray crystal structure of Archaeoglobus fulgidus Rio1 bound to (2E)-N-benzyl-2-cyano-3-(pyridine-4-yl)acrylamide (WP1086) 1 N N 2 N N 3 N N A TYR 10 A TYR 10 HELX_P A LEU 14 A LEU 14 5 1 5 A ASP 20 A ASP 20 HELX_P A LEU 31 A LEU 31 1 2 12 A ASP 32 A ASP 32 HELX_P A LYS 45 A LYS 45 1 3 14 A ASP 90 A ASP 90 HELX_P A TYR 95 A TYR 95 1 4 6 A ASP 103 A ASP 103 HELX_P A ILE 107 A ILE 107 5 5 5 A SER 108 A SER 108 HELX_P A LYS 110 A LYS 110 5 6 3 A GLU 111 A GLU 111 HELX_P A ALA 130 A ALA 130 1 7 20 A THR 159 A THR 159 HELX_P A GLY 164 A GLY 164 1 8 6 A ARG 165 A ARG 165 HELX_P A LEU 170 A LEU 170 5 9 6 A ASP 171 A ASP 171 HELX_P A GLU 189 A GLU 189 1 10 19 A MET 223 A MET 223 HELX_P A LYS 241 A LYS 241 1 11 19 A ASP 247 A ASP 247 HELX_P A GLY 257 A GLY 257 1 12 11 TRANSFERASE/TRANSFERASE INHIBITOR protein kinase, Ribosome Biogenesis, pre-40S, autophosphorylation, TRANSFERASE-TRANSFERASE INHIBITOR complex RIO1_ARCFU UNP 1 1 O28471 MKDLKKIESYLDKLRIKEKDGEERKIYAEVLDGRTLKTLYKLSAKGYITAMGGVISTGKEANVFYADGVFDGKPVAMAVK IYRIETSEFDKMDEYLYGDERFDMRRISPKEKVFIWTEKEFRNLERAKEAGVSVPQPYTYMKNVLLMEFIGEDELPAPTL VELGRELKELDVEGIFNDVVENVKRLYQEAELVHADLSEYNIMYIDKVYFIDMGQAVTLRHPMAESYLERDVRNIIRFFS KYGVKADFEEMLKEVKGE 1 258 4JIN 1 258 O28471 A 1 1 258 5 2 2 2 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A ILE 48 A ILE 48 A SER 56 A SER 56 A ALA 61 A ALA 61 A PHE 70 A PHE 70 A LYS 73 A LYS 73 A TYR 82 A TYR 82 A VAL 144 A VAL 144 A GLU 148 A GLU 148 A PRO 137 A PRO 137 A MET 141 A MET 141 A GLY 151 A GLY 151 A GLU 152 A GLU 152 A LEU 155 A LEU 155 A PRO 156 A PRO 156 A LEU 192 A LEU 192 A HIS 194 A HIS 194 A ALA 216 A ALA 216 A THR 218 A THR 218 A ILE 202 A ILE 202 A TYR 204 A TYR 204 A VAL 208 A VAL 208 A PHE 210 A PHE 210 BINDING SITE FOR RESIDUE 1L7 A 301 A 1L7 301 Software 11 A ILE 55 A ILE 55 11 1_555 A SER 56 A SER 56 11 1_555 A ALA 61 A ALA 61 11 1_555 A LYS 80 A LYS 80 11 1_555 A GLU 148 A GLU 148 11 1_555 A ILE 150 A ILE 150 11 1_555 A ILE 211 A ILE 211 11 1_555 A ASP 212 A ASP 212 11 1_555 A HOH 452 C HOH 11 1_555 A HOH 469 C HOH 11 1_555 A HOH 471 C HOH 11 1_555 4 P 1 21 1