0.021860
0.000000
0.000000
0.000000
0.021860
0.000000
0.000000
0.000000
0.021860
0.00000
0.00000
0.00000
Sigel, R.K.O.
Schnabl, J.A.
Freisinger, E.
Spingler, B.
Hannon, M.J.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
12
90.00
90.00
90.00
45.745
45.745
45.745
C10 H14 N5 O7 P
347.221
y
ADENOSINE-5'-MONOPHOSPHATE
RNA linking
C9 H14 N3 O8 P
323.197
y
CYTIDINE-5'-MONOPHOSPHATE
RNA linking
Fe 2
55.845
FE (II) ION
non-polymer
C10 H14 N5 O8 P
363.221
y
GUANOSINE-5'-MONOPHOSPHATE
RNA linking
H2 O
18.015
WATER
non-polymer
C25 H20 N4
376.453
N-[(1E)-PYRIDIN-2-YLMETHYLENE]-N-[4-(4-{[(1E)-PYRIDIN-2-YLMETHYLENE]AMINO}BENZYL)PHENYL]AMINE
1,1-BIS(N-(4-PHENYL)-2-PYRIDYLCARBOXALDIMINE)METHANE
non-polymer
C9 H13 N2 O9 P
324.181
y
URIDINE-5'-MONOPHOSPHATE
RNA linking
N
1
N
O
N
2
N
P
N
3
N
O
N
4
N
O
N
5
N
O
N
6
N
C
N
7
R
C
N
8
N
O
N
9
S
C
N
10
N
O
N
11
R
C
N
12
N
O
N
13
R
C
Y
14
N
N
Y
15
N
C
Y
16
N
N
Y
17
N
C
Y
18
N
C
N
19
N
N
Y
20
N
N
Y
21
N
C
Y
22
N
N
Y
23
N
C
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
O
N
39
N
P
N
40
N
O
N
41
N
O
N
42
N
O
N
43
N
C
N
44
R
C
N
45
N
O
N
46
S
C
N
47
N
O
N
48
R
C
N
49
N
O
N
50
R
C
N
51
N
N
N
52
N
C
N
53
N
O
N
54
N
N
N
55
N
C
N
56
N
N
N
57
N
C
N
58
N
C
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
FE
N
74
N
O
N
75
N
P
N
76
N
O
N
77
N
O
N
78
N
O
N
79
N
C
N
80
R
C
N
81
N
O
N
82
S
C
N
83
N
O
N
84
R
C
N
85
N
O
N
86
R
C
Y
87
N
N
Y
88
N
C
Y
89
N
N
Y
90
N
C
N
91
N
C
N
92
N
O
N
93
N
N
N
94
N
C
N
95
N
N
N
96
N
N
Y
97
N
C
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
O
N
113
N
H
N
114
N
H
Y
115
N
N
N
116
N
N
N
117
N
N
Y
118
N
N
Y
119
N
C
Y
120
N
C
Y
121
N
C
Y
122
N
C
Y
123
N
C
N
124
N
C
Y
125
N
C
Y
126
N
C
Y
127
N
C
Y
128
N
C
Y
129
N
C
Y
130
N
C
N
131
N
C
Y
132
N
C
Y
133
N
C
Y
134
N
C
Y
135
N
C
Y
136
N
C
Y
137
N
C
N
138
N
C
Y
139
N
C
Y
140
N
C
Y
141
N
C
Y
142
N
C
Y
143
N
C
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
O
N
165
N
P
N
166
N
O
N
167
N
O
N
168
N
O
N
169
N
C
N
170
R
C
N
171
N
O
N
172
S
C
N
173
N
O
N
174
R
C
N
175
N
O
N
176
R
C
N
177
N
N
N
178
N
C
N
179
N
O
N
180
N
N
N
181
N
C
N
182
N
O
N
183
N
C
N
184
N
C
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
1
N
sing
N
2
N
sing
N
3
N
doub
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
Y
25
N
sing
Y
26
N
sing
Y
27
N
doub
N
28
N
sing
Y
29
N
sing
Y
30
N
sing
Y
31
N
doub
N
32
N
sing
Y
33
N
doub
N
34
N
sing
N
35
N
sing
Y
36
N
sing
Y
37
N
doub
N
38
N
sing
Y
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
doub
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
doub
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
doub
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
doub
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
Y
100
N
sing
Y
101
N
sing
Y
102
N
doub
N
103
N
sing
Y
104
N
sing
N
105
N
sing
Y
106
N
doub
N
107
N
doub
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
doub
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
Y
118
N
doub
Y
119
N
sing
N
120
N
doub
N
121
N
sing
N
122
N
sing
N
123
N
doub
Y
124
N
sing
Y
125
N
doub
Y
126
N
sing
N
127
N
sing
Y
128
N
doub
N
129
N
sing
Y
130
N
sing
N
131
N
sing
Y
132
N
doub
N
133
N
sing
N
134
N
sing
N
135
N
sing
Y
136
N
sing
Y
137
N
doub
Y
138
N
doub
N
139
N
sing
Y
140
N
sing
N
141
N
sing
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
Y
150
N
doub
Y
151
N
sing
Y
152
N
sing
N
153
N
sing
Y
154
N
doub
N
155
N
sing
Y
156
N
sing
Y
157
N
doub
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
Y
162
N
doub
Y
163
N
sing
N
164
N
sing
Y
165
N
doub
N
166
N
sing
Y
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
doub
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
doub
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
doub
N
203
N
sing
N
204
N
sing
GE
Angew.Chem.Int.Ed.Engl.
9999
1433-7851
52
11513
11516
10.1002/anie.201305079
24039102
Binding of a designed anti-cancer drug to the central cavity of an RNA three-way junction.
2013
10.2210/pdb4jiy/pdb
pdb_00004jiy
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
100
2
MIRROR, BARTELS MONOCHROMATOR, DUAL CHANNEL CUT CRYSTALS, TOROIDAL MIRROR
CCD
2009-12-10
MARMOSAIC 225 mm CCD
MIRROR, BARTELS MONOCHROMATOR, DUAL CHANNEL CUT CRYSTALS, TOROIDAL MIRROR
CCD
2009-09-12
MARMOSAIC 225 mm CCD
BARTELS MONOCHROMATOR
SINGLE WAVELENGTH
M
x-ray
1
BARTELS MONOCHROMATOR
MAD
M
x-ray
1
0.9999
1.0
X06DA
SLS
0.9999
0.9999
SYNCHROTRON
SLS BEAMLINE X06DA
X06DA
SLS
0.9999
SYNCHROTRON
SLS BEAMLINE X06DA
1891.189
5'-(CGUACG)-3'
1
syn
polymer
376.453
N-[(1E)-PYRIDIN-2-YLMETHYLENE]-N-[4-(4-{[(1E)-PYRIDIN-2-YLMETHYLENE]AMINO}BENZYL)PHENYL]AMINE
2
syn
non-polymer
55.845
FE (II) ION
4
syn
non-polymer
18.015
water
39
nat
water
no
no
CGUACG
CGUACG
A
polyribonucleotide
n
n
n
n
n
n
2
4.22
70.84
THE STRUCTURE FACTOR FILE CONTAINS FRIEDEL PAIRS.
VAPOR DIFFUSION, SITTING DROP
8.5
20% PEG 400, 0.18M MAGNESIUM ACETATE, 0.05M TRIS CHLORIDE, PH 8.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293.15K. 15% PEG 400, 0.165M MAGNESIUM ACETATE, 0.05M TRIS CHLORIDE, PH 8.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293.15K
293.15
VAPOR DIFFUSION, SITTING DROP
8.5
15% PEG 400, 0.165M MAGNESIUM ACETATE, 0.05M TRIS CHLORIDE, PH 8.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293.15K
293.15
-2.229
1
19
A
1
A
6
-0.143
A_C1:G6_A
1
-7.943
0.184
0.189
-0.195
-4.570
1
19
A
2
A
5
3.891
A_G2:C5_A
2
-21.204
-0.452
0.135
-0.268
-6.662
1
20
A
3
A
4
3.883
A_U3:A4_A
3
-15.620
0.138
0.279
-0.275
2.336
31.773
A
A
1
2
21.086
A
A
6
5
3.123
11.302
0.499
-1.739
AA_C1G2:C5G6_AA
1
0.890
-1.660
29.730
-4.966
-0.770
3.093
37.096
A
A
2
3
8.390
A
A
5
4
3.308
5.320
0.035
-1.312
AA_G2U3:A4C5_AA
2
-0.824
1.300
36.717
-2.762
-0.163
chem_comp_atom
chem_comp_bond
database_2
pdbx_struct_conn_angle
struct_conn
struct_site
repository
Initial release
Database references
Database references
Data collection
Database references
Derived calculations
1
0
2013-09-04
1
1
2013-10-02
1
2
2013-11-06
1
3
2024-02-28
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr2_auth_seq_id
_pdbx_struct_conn_angle.ptnr2_label_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
The structure of a three-way DNA junction in complex with a metallo-supramolecular helicate reveals a new target for drugs
Distinct recognition of three-way DNA junctions by a thioester variant of a metallo-supramolecular cylinder ('helicate')
Distinct recognition of three-way DNA junctions by the two enantiomers of a metallo-supramolecular cylinder ('helicate')
RCSB
Y
RCSB
2013-03-07
REL
REL
NPM
N-[(1E)-PYRIDIN-2-YLMETHYLENE]-N-[4-(4-{[(1E)-PYRIDIN-2-YLMETHYLENE]AMINO}BENZYL)PHENYL]AMINE
FE2
FE (II) ION
HOH
water
NPM
21
2
NPM
NPM
101
A
FE2
22
3
FE2
FE2
102
A
FE2
23
3
FE2
FE2
103
A
NPM
41
2
NPM
NPM
104
A
FE2
42
3
FE2
FE2
105
A
FE2
43
3
FE2
FE2
106
A
HOH
101
4
HOH
HOH
201
A
HOH
102
4
HOH
HOH
202
A
HOH
103
4
HOH
HOH
203
A
HOH
104
4
HOH
HOH
204
A
HOH
105
4
HOH
HOH
205
A
HOH
108
4
HOH
HOH
206
A
HOH
110
4
HOH
HOH
207
A
HOH
111
4
HOH
HOH
208
A
HOH
112
4
HOH
HOH
209
A
HOH
113
4
HOH
HOH
210
A
HOH
114
4
HOH
HOH
211
A
HOH
115
4
HOH
HOH
212
A
HOH
116
4
HOH
HOH
213
A
HOH
117
4
HOH
HOH
214
A
HOH
118
4
HOH
HOH
215
A
HOH
119
4
HOH
HOH
216
A
HOH
120
4
HOH
HOH
217
A
HOH
121
4
HOH
HOH
218
A
HOH
122
4
HOH
HOH
219
A
HOH
123
4
HOH
HOH
220
A
HOH
124
4
HOH
HOH
221
A
HOH
125
4
HOH
HOH
222
A
HOH
126
4
HOH
HOH
223
A
HOH
127
4
HOH
HOH
224
A
HOH
128
4
HOH
HOH
225
A
HOH
129
4
HOH
HOH
226
A
HOH
130
4
HOH
HOH
227
A
HOH
132
4
HOH
HOH
228
A
HOH
133
4
HOH
HOH
229
A
HOH
134
4
HOH
HOH
230
A
HOH
135
4
HOH
HOH
231
A
HOH
136
4
HOH
HOH
232
A
HOH
138
4
HOH
HOH
233
A
HOH
139
4
HOH
HOH
234
A
HOH
140
4
HOH
HOH
235
A
HOH
141
4
HOH
HOH
236
A
HOH
142
4
HOH
HOH
237
A
HOH
143
4
HOH
HOH
238
A
HOH
145
4
HOH
HOH
239
A
C
1
n
1
C
1
A
G
2
n
2
G
2
A
U
3
n
3
U
3
A
A
4
n
4
A
4
A
C
5
n
5
C
5
A
G
6
n
6
G
6
A
0.224
0.234
0.271
0.282
211
242
5.000
4030
author_and_software_defined_assembly
PISA
3
trimeric
4090
-67
3040
A
NPM
101
B
N12
NPM
1_555
A
FE2
102
C
FE
FE2
1_555
A
NPM
101
B
N11
NPM
1_555
79.1
A
NPM
101
B
N14
NPM
1_555
A
FE2
103
D
FE
FE2
1_555
A
NPM
101
B
N13
NPM
1_555
80.4
A
NPM
104
E
N11
NPM
1_555
A
FE2
105
F
FE
FE2
1_555
A
NPM
104
E
N12
NPM
1_555
79.2
A
NPM
104
E
N14
NPM
1_555
A
FE2
106
G
FE
FE2
1_555
A
NPM
104
E
N13
NPM
1_555
81.0
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
5_555
z,x,y
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1.0000000000
0.0000000000
0.0000000000
9_555
y,z,x
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
1
A
FE2
102
C
FE2
1
A
FE2
103
D
FE2
1
A
FE2
105
F
FE2
1
A
FE2
106
G
FE2
1
A
HOH
207
H
HOH
51.2
0.2709
0.224
1.91
26.41
242
4814
4030
5.000
83.7
RANDOM
1,2
4.000
2
MAD
KLOSTERMAN & SINE
1.91
26.41
39
226
62
125
0
0.009
0.027
0.040
0.008
0.004
0.164
1.910
45.745
4JIY
4826
4030
4
2.000
0.02040
1,2
27.0600
7.500
99.7
0.38470
1.91
2.01
2.670
703
0.38470
1,2
0.99
98.7
data collection
RemDAq
phasing
SHELXD
refinement
SHELXL-97
data reduction
XDS
data reduction
XPREP
RNA three-way junction stabilized by a supramolecular di-iron(II) cylinder drug
1
N
N
2
N
N
3
N
N
3
N
N
2
N
N
3
N
N
3
N
N
4
N
N
BIOMOLECULE: 1, 2
SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
BURIED SURFACE AREA.
REMARK: THE RNA THREE-WAY JUNCTION IS GENERATED FROM THE ASYMMETRIC
UNIT BY THE OPERATIONS. THE TERMINAL 1/3 CYLINDER LIGANDS ARE PART
OF THE INFINITE CRYSTAL LATTICE.
COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
BIOMOLECULE: 1
AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC
SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC
SOFTWARE USED: PISA
TOTAL BURIED SURFACE AREA: 970 ANGSTROM**2
SURFACE AREA OF THE COMPLEX: 3870 ANGSTROM**2
CHANGE IN SOLVENT FREE ENERGY: -5.0 KCAL/MOL
APPLY THE FOLLOWING TO CHAINS: A
BIOMT1 1 1.000000 0.000000 0.000000 0.00000
BIOMT2 1 0.000000 1.000000 0.000000 0.00000
BIOMT3 1 0.000000 0.000000 1.000000 0.00000
BIOMT1 2 0.000000 0.000000 1.000000 0.00000
BIOMT2 2 1.000000 0.000000 0.000000 0.00000
BIOMT3 2 0.000000 1.000000 0.000000 0.00000
BIOMT1 3 0.000000 1.000000 0.000000 0.00000
BIOMT2 3 0.000000 0.000000 1.000000 0.00000
BIOMT3 3 1.000000 0.000000 0.000000 0.00000
BIOMOLECULE: 2
AUTHOR DETERMINED BIOLOGICAL UNIT: NONAMERIC
APPLY THE FOLLOWING TO CHAINS: A
BIOMT1 1 1.000000 0.000000 0.000000 0.00000
BIOMT2 1 0.000000 1.000000 0.000000 0.00000
BIOMT3 1 0.000000 0.000000 1.000000 0.00000
BIOMT1 2 -1.000000 0.000000 0.000000 68.61750
BIOMT2 2 0.000000 -1.000000 0.000000 91.49000
BIOMT3 2 0.000000 0.000000 1.000000 22.87250
BIOMT1 3 -1.000000 0.000000 0.000000 91.49000
BIOMT2 3 0.000000 1.000000 0.000000 -22.87250
BIOMT3 3 0.000000 0.000000 -1.000000 68.61750
BIOMT1 4 0.000000 0.000000 1.000000 0.00000
BIOMT2 4 1.000000 0.000000 0.000000 0.00000
BIOMT3 4 0.000000 1.000000 0.000000 0.00000
BIOMT1 5 0.000000 0.000000 1.000000 22.87250
BIOMT2 5 -1.000000 0.000000 0.000000 68.61750
BIOMT3 5 0.000000 -1.000000 0.000000 91.49000
BIOMT1 6 0.000000 0.000000 -1.000000 68.61750
BIOMT2 6 -1.000000 0.000000 0.000000 91.49000
BIOMT3 6 0.000000 1.000000 0.000000 -22.87250
BIOMT1 7 0.000000 1.000000 0.000000 0.00000
BIOMT2 7 0.000000 0.000000 1.000000 0.00000
BIOMT3 7 1.000000 0.000000 0.000000 0.00000
BIOMT1 8 0.000000 -1.000000 0.000000 91.49000
BIOMT2 8 0.000000 0.000000 1.000000 22.87250
BIOMT3 8 -1.000000 0.000000 0.000000 68.61750
BIOMT1 9 0.000000 1.000000 0.000000 -22.87250
BIOMT2 9 0.000000 0.000000 -1.000000 68.61750
BIOMT3 9 -1.000000 0.000000 0.000000 91.49000
metalc
1.983
A
NPM
101
B
N12
NPM
1_555
A
FE2
102
C
FE
FE2
1_555
metalc
1.987
A
NPM
101
B
N11
NPM
1_555
A
FE2
102
C
FE
FE2
1_555
metalc
1.978
A
NPM
101
B
N14
NPM
1_555
A
FE2
103
D
FE
FE2
1_555
metalc
1.981
A
NPM
101
B
N13
NPM
1_555
A
FE2
103
D
FE
FE2
1_555
metalc
1.977
A
NPM
104
E
N11
NPM
1_555
A
FE2
105
F
FE
FE2
1_555
metalc
1.987
A
NPM
104
E
N12
NPM
1_555
A
FE2
105
F
FE
FE2
1_555
metalc
1.974
A
NPM
104
E
N14
NPM
1_555
A
FE2
106
G
FE
FE2
1_555
metalc
1.984
A
NPM
104
E
N13
NPM
1_555
A
FE2
106
G
FE
FE2
1_555
hydrog
WATSON-CRICK
A
C
1
A
N3
C
1
1_555
A
G
6
A
N1
G
6
5_555
hydrog
WATSON-CRICK
A
C
1
A
N4
C
1
1_555
A
G
6
A
O6
G
6
5_555
hydrog
WATSON-CRICK
A
C
1
A
O2
C
1
1_555
A
G
6
A
N2
G
6
5_555
hydrog
WATSON-CRICK
A
G
2
A
N1
G
2
1_555
A
C
5
A
N3
C
5
5_555
hydrog
WATSON-CRICK
A
G
2
A
N2
G
2
1_555
A
C
5
A
O2
C
5
5_555
hydrog
WATSON-CRICK
A
G
2
A
O6
G
2
1_555
A
C
5
A
N4
C
5
5_555
hydrog
WATSON-CRICK
A
U
3
A
N3
U
3
1_555
A
A
4
A
N1
A
4
5_555
hydrog
WATSON-CRICK
A
U
3
A
O4
U
3
1_555
A
A
4
A
N6
A
4
5_555
RNA
RNA, THREE-WAY JUNCTION, DRUG-RNA COMPLEX, RNA STRUCTURE RECOGNITION, CYLINDER, SUPRAMOLECULE
4JIY
PDB
1
4JIY
CGUACG
1
6
4JIY
1
6
4JIY
A
1
1
6
BINDING SITE FOR RESIDUE NPM A 101
A
NPM
101
Software
8
BINDING SITE FOR RESIDUE FE2 A 102
A
FE2
102
Software
3
BINDING SITE FOR RESIDUE FE2 A 103
A
FE2
103
Software
3
BINDING SITE FOR RESIDUE NPM A 104
A
NPM
104
Software
9
BINDING SITE FOR RESIDUE FE2 A 105
A
FE2
105
Software
3
BINDING SITE FOR RESIDUE FE2 A 106
A
FE2
106
Software
3
A
C
1
A
C
1
8
10_756
A
G
6
A
G
6
8
5_555
A
FE2
102
C
FE2
8
10_756
A
FE2
102
C
FE2
8
1_555
A
FE2
102
C
FE2
8
7_674
A
FE2
103
D
FE2
8
10_756
A
FE2
103
D
FE2
8
7_674
A
FE2
103
D
FE2
8
1_555
A
NPM
101
B
NPM
3
1_555
A
NPM
101
B
NPM
3
7_674
A
NPM
101
B
NPM
3
10_756
A
NPM
101
B
NPM
3
7_674
A
NPM
101
B
NPM
3
10_756
A
NPM
101
B
NPM
3
1_555
A
U
3
A
U
3
9
5_555
A
A
4
A
A
4
9
5_555
A
A
4
A
A
4
9
9_555
A
FE2
105
F
FE2
9
5_555
A
FE2
105
F
FE2
9
9_555
A
FE2
105
F
FE2
9
1_555
A
FE2
106
G
FE2
9
9_555
A
FE2
106
G
FE2
9
5_555
A
FE2
106
G
FE2
9
1_555
A
NPM
104
E
NPM
3
5_555
A
NPM
104
E
NPM
3
1_555
A
NPM
104
E
NPM
3
9_555
A
NPM
104
E
NPM
3
5_555
A
NPM
104
E
NPM
3
9_555
A
NPM
104
E
NPM
3
1_555
198
P 21 3