0.019580
0.000000
0.000000
0.000000
0.013396
0.000000
0.000000
0.000000
0.009396
0.000000
0.000000
0.000000
Boyce, S.E.
Fischer, M.
Fish, I.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.000
90.000
90.000
51.073
74.649
106.424
C6 H5 F O2
128.101
3-FLUOROBENZENE-1,2-DIOL
3-FLUOROCATECHOL
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C34 H32 Fe N4 O4
616.487
PROTOPORPHYRIN IX CONTAINING FE
HEME
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
O
Y
2
N
C
Y
3
N
C
N
4
N
F
Y
5
N
C
Y
6
N
C
Y
7
N
C
Y
8
N
C
N
9
N
O
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
H
N
15
N
N
N
16
S
C
N
17
N
C
N
18
N
O
N
19
N
C
N
20
N
O
N
21
N
H
N
22
N
H
N
23
N
H
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
N
N
29
S
C
N
30
N
C
N
31
N
O
N
32
N
C
N
33
N
C
N
34
N
C
N
35
N
N
N
36
N
C
N
37
N
N
N
38
N
N
N
39
N
O
N
40
N
H
N
41
N
H
N
42
N
H
N
43
N
H
N
44
N
H
N
45
N
H
N
46
N
H
N
47
N
H
N
48
N
H
N
49
N
H
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
N
N
56
S
C
N
57
N
C
N
58
N
O
N
59
N
C
N
60
N
C
N
61
N
O
N
62
N
N
N
63
N
O
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
N
N
73
S
C
N
74
N
C
N
75
N
O
N
76
N
C
N
77
N
C
N
78
N
O
N
79
N
O
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
R
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
S
N
94
N
O
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
N
N
103
S
C
N
104
N
C
N
105
N
O
N
106
N
C
N
107
N
C
N
108
N
C
N
109
N
O
N
110
N
N
N
111
N
O
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
N
N
123
S
C
N
124
N
C
N
125
N
O
N
126
N
C
N
127
N
C
N
128
N
C
N
129
N
O
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
N
N
142
N
C
N
143
N
C
N
144
N
O
N
145
N
O
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
C
N
152
N
C
N
153
N
C
N
154
N
C
Y
155
N
C
Y
156
N
C
Y
157
N
C
Y
158
N
C
N
159
N
C
N
160
N
C
N
161
N
C
N
162
N
C
N
163
N
O
N
164
N
O
N
165
N
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
C
N
170
N
C
N
171
N
C
Y
172
N
C
Y
173
N
C
Y
174
N
C
Y
175
N
C
N
176
N
C
N
177
N
C
N
178
N
C
N
179
N
C
N
180
N
C
N
181
N
C
N
182
N
C
N
183
N
C
N
184
N
C
N
185
N
C
N
186
N
C
N
187
N
O
N
188
N
O
Y
189
N
N
N
190
N
N
Y
191
N
N
N
192
N
N
N
193
N
FE
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
N
N
227
S
C
N
228
N
C
N
229
N
O
N
230
N
C
Y
231
N
C
Y
232
N
N
Y
233
N
C
Y
234
N
C
Y
235
N
N
N
236
N
O
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
O
N
248
N
H
N
249
N
H
N
250
N
N
N
251
S
C
N
252
N
C
N
253
N
O
N
254
S
C
N
255
N
C
N
256
N
C
N
257
N
C
N
258
N
O
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
N
N
273
S
C
N
274
N
C
N
275
N
O
N
276
N
C
N
277
N
C
N
278
N
C
N
279
N
C
N
280
N
O
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
N
N
295
S
C
N
296
N
C
N
297
N
O
N
298
N
C
N
299
N
C
N
300
N
C
N
301
N
C
N
302
N
N
N
303
N
O
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
N
N
320
S
C
N
321
N
C
N
322
N
O
N
323
N
C
N
324
N
C
N
325
N
S
N
326
N
C
N
327
N
O
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
N
N
340
S
C
N
341
N
C
N
342
N
O
N
343
N
C
Y
344
N
C
Y
345
N
C
Y
346
N
C
Y
347
N
C
Y
348
N
C
Y
349
N
C
N
350
N
O
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
N
N
363
S
C
N
364
N
C
N
365
N
O
N
366
N
C
N
367
N
C
N
368
N
C
N
369
N
O
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
N
N
380
S
C
N
381
N
C
N
382
N
O
N
383
N
C
N
384
N
O
N
385
N
O
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
N
N
394
S
C
N
395
N
C
N
396
N
O
N
397
R
C
N
398
N
O
N
399
N
C
N
400
N
O
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
N
N
411
S
C
N
412
N
C
N
413
N
O
N
414
N
C
Y
415
N
C
Y
416
N
C
Y
417
N
C
Y
418
N
N
Y
419
N
C
Y
420
N
C
Y
421
N
C
Y
422
N
C
Y
423
N
C
N
424
N
O
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
N
N
438
S
C
N
439
N
C
N
440
N
O
N
441
N
C
Y
442
N
C
Y
443
N
C
Y
444
N
C
Y
445
N
C
Y
446
N
C
Y
447
N
C
N
448
N
O
N
449
N
O
N
450
N
H
N
451
N
H
N
452
N
H
N
453
N
H
N
454
N
H
N
455
N
H
N
456
N
H
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
N
N
462
S
C
N
463
N
C
N
464
N
O
N
465
N
C
N
466
N
C
N
467
N
C
N
468
N
O
N
469
N
H
N
470
N
H
N
471
N
H
N
472
N
H
N
473
N
H
N
474
N
H
N
475
N
H
N
476
N
H
N
477
N
H
N
478
N
H
N
479
N
H
N
1
N
sing
N
2
N
sing
Y
3
N
doub
Y
4
N
sing
N
5
N
sing
Y
6
N
sing
Y
7
N
doub
N
8
N
sing
Y
9
N
sing
N
10
N
sing
Y
11
N
doub
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
doub
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
doub
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
doub
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
doub
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
doub
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
doub
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
doub
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
doub
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
doub
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
doub
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
doub
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
doub
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
doub
N
145
N
sing
N
146
N
sing
N
147
N
doub
N
148
N
sing
N
149
N
sing
N
150
N
doub
N
151
N
sing
N
152
N
doub
N
153
N
sing
N
154
N
sing
Y
155
N
doub
Y
156
N
sing
Y
157
N
sing
N
158
N
sing
Y
159
N
doub
N
160
N
sing
Y
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
doub
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
doub
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
doub
N
184
N
sing
N
185
N
sing
N
186
N
sing
Y
187
N
sing
Y
188
N
sing
Y
189
N
doub
N
190
N
sing
Y
191
N
sing
N
192
N
sing
Y
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
doub
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
doub
N
203
N
doub
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
doub
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
doub
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
Y
236
N
sing
Y
237
N
doub
Y
238
N
doub
N
239
N
sing
Y
240
N
sing
N
241
N
sing
Y
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
doub
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
doub
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
doub
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
doub
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
doub
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
Y
344
N
doub
Y
345
N
sing
Y
346
N
sing
N
347
N
sing
Y
348
N
doub
N
349
N
sing
Y
350
N
doub
N
351
N
sing
Y
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
doub
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
doub
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
doub
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
doub
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
Y
413
N
doub
Y
414
N
sing
Y
415
N
sing
N
416
N
sing
Y
417
N
doub
Y
418
N
sing
Y
419
N
sing
N
420
N
sing
Y
421
N
sing
Y
422
N
doub
N
423
N
sing
Y
424
N
doub
N
425
N
sing
Y
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
doub
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
Y
441
N
doub
Y
442
N
sing
Y
443
N
sing
N
444
N
sing
Y
445
N
doub
N
446
N
sing
Y
447
N
doub
N
448
N
sing
Y
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
doub
N
461
N
sing
N
462
N
sing
N
463
N
sing
N
464
N
sing
N
465
N
sing
N
466
N
sing
N
467
N
sing
N
468
N
sing
N
469
N
sing
N
470
N
sing
N
471
N
sing
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
425
4569
4583
10.1016/j.jmb.2013.07.030
23896298
Blind prediction of charged ligand binding affinities in a model binding site.
2013
To be Published
0353
Docking to a water-filled model binding site in Cytochrome c Peroxidase
10.2210/pdb4jma/pdb
pdb_00004jma
80
1
CCD
2009-05-18
ADSC QUANTUM 315r
Double flat crystal, Si(111)
SINGLE WAVELENGTH
M
x-ray
1
1.0
8.3.1
ALS
SYNCHROTRON
ALS BEAMLINE 8.3.1
32928.582
Cytochrome c peroxidase
1.11.1.5
RESIDUES 72-362, deletions G192-A193
P190G, W191G
1
man
polymer
616.487
PROTOPORPHYRIN IX CONTAINING FE
1
syn
non-polymer
128.101
3-FLUOROBENZENE-1,2-DIOL
2
syn
non-polymer
18.015
water
407
nat
water
no
no
LVHVASVEKGRSYEDFQKVYNAIALKLREDDEYDNYIGYGPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNA
GLQNGFKFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRLNM
NDREVVALMGAHALGKTHLKNSGYEGGGANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYL
SIVKEYANDQDKFFKDFSKAFEKLLENGITFPKDAPSPFIFKTLEEQGL
LVHVASVEKGRSYEDFQKVYNAIALKLREDDEYDNYIGYGPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNA
GLQNGFKFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRLNM
NDREVVALMGAHALGKTHLKNSGYEGGGANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYL
SIVKEYANDQDKFFKDFSKAFEKLLENGITFPKDAPSPFIFKTLEEQGL
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Baker's yeast
RM11-1a
sample
CCP1 CCP CPO YKR066C, SCRG_04081
285006
Saccharomyces cerevisiae
469008
Escherichia coli
BL21(DE3)
1
3.08
60.07
VAPOR DIFFUSION, SITTING DROP
6
Apo crystal grown in 500mM MES, pH 6.0. Soaked into 50mM 3-Fluorocatechol, 25% MPD (30min-1h), vapor diffusion, sitting drop, temperature 283K, VAPOR DIFFUSION, SITTING DROP
283
chem_comp_atom
chem_comp_bond
database_2
pdbx_struct_conn_angle
struct_conn
struct_ref_seq_dif
struct_site
repository
Initial release
Database references
Database references
Data collection
Database references
Derived calculations
1
0
2013-05-01
1
1
2013-10-09
1
2
2013-11-20
1
3
2024-02-28
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
RCSB
2013-03-13
REL
REL
HEM
PROTOPORPHYRIN IX CONTAINING FE
3FA
3-FLUOROBENZENE-1,2-DIOL
HOH
water
HEM
1
2
HEM
HEM
301
A
3FA
1
3
3FA
3FA
302
A
3FA
1
3
3FA
3FA
303
A
HOH
1
4
HOH
HOH
401
A
HOH
2
4
HOH
HOH
402
A
HOH
3
4
HOH
HOH
403
A
HOH
4
4
HOH
HOH
404
A
HOH
5
4
HOH
HOH
405
A
HOH
6
4
HOH
HOH
406
A
HOH
7
4
HOH
HOH
407
A
HOH
8
4
HOH
HOH
408
A
HOH
9
4
HOH
HOH
409
A
HOH
10
4
HOH
HOH
410
A
HOH
11
4
HOH
HOH
411
A
HOH
12
4
HOH
HOH
412
A
HOH
13
4
HOH
HOH
413
A
HOH
14
4
HOH
HOH
414
A
HOH
15
4
HOH
HOH
415
A
HOH
16
4
HOH
HOH
416
A
HOH
17
4
HOH
HOH
417
A
HOH
18
4
HOH
HOH
418
A
HOH
19
4
HOH
HOH
419
A
HOH
20
4
HOH
HOH
420
A
HOH
21
4
HOH
HOH
421
A
HOH
22
4
HOH
HOH
422
A
HOH
23
4
HOH
HOH
423
A
HOH
24
4
HOH
HOH
424
A
HOH
25
4
HOH
HOH
425
A
HOH
26
4
HOH
HOH
426
A
HOH
27
4
HOH
HOH
427
A
HOH
28
4
HOH
HOH
428
A
HOH
29
4
HOH
HOH
429
A
HOH
30
4
HOH
HOH
430
A
HOH
31
4
HOH
HOH
431
A
HOH
32
4
HOH
HOH
432
A
HOH
33
4
HOH
HOH
433
A
HOH
34
4
HOH
HOH
434
A
HOH
35
4
HOH
HOH
435
A
HOH
36
4
HOH
HOH
436
A
HOH
37
4
HOH
HOH
437
A
HOH
38
4
HOH
HOH
438
A
HOH
39
4
HOH
HOH
439
A
HOH
40
4
HOH
HOH
440
A
HOH
41
4
HOH
HOH
441
A
HOH
42
4
HOH
HOH
442
A
HOH
43
4
HOH
HOH
443
A
HOH
44
4
HOH
HOH
444
A
HOH
45
4
HOH
HOH
445
A
HOH
46
4
HOH
HOH
446
A
HOH
47
4
HOH
HOH
447
A
HOH
48
4
HOH
HOH
448
A
HOH
49
4
HOH
HOH
449
A
HOH
50
4
HOH
HOH
450
A
HOH
51
4
HOH
HOH
451
A
HOH
52
4
HOH
HOH
452
A
HOH
53
4
HOH
HOH
453
A
HOH
54
4
HOH
HOH
454
A
HOH
55
4
HOH
HOH
455
A
HOH
56
4
HOH
HOH
456
A
HOH
57
4
HOH
HOH
457
A
HOH
58
4
HOH
HOH
458
A
HOH
60
4
HOH
HOH
459
A
HOH
61
4
HOH
HOH
460
A
HOH
62
4
HOH
HOH
461
A
HOH
63
4
HOH
HOH
462
A
HOH
65
4
HOH
HOH
463
A
HOH
66
4
HOH
HOH
464
A
HOH
67
4
HOH
HOH
465
A
HOH
68
4
HOH
HOH
466
A
HOH
70
4
HOH
HOH
467
A
HOH
72
4
HOH
HOH
468
A
HOH
73
4
HOH
HOH
469
A
HOH
74
4
HOH
HOH
470
A
HOH
75
4
HOH
HOH
471
A
HOH
76
4
HOH
HOH
472
A
HOH
77
4
HOH
HOH
473
A
HOH
78
4
HOH
HOH
474
A
HOH
79
4
HOH
HOH
475
A
HOH
80
4
HOH
HOH
476
A
HOH
81
4
HOH
HOH
477
A
HOH
82
4
HOH
HOH
478
A
HOH
84
4
HOH
HOH
479
A
HOH
85
4
HOH
HOH
480
A
HOH
86
4
HOH
HOH
481
A
HOH
87
4
HOH
HOH
482
A
HOH
88
4
HOH
HOH
483
A
HOH
89
4
HOH
HOH
484
A
HOH
90
4
HOH
HOH
485
A
HOH
91
4
HOH
HOH
486
A
HOH
92
4
HOH
HOH
487
A
HOH
93
4
HOH
HOH
488
A
HOH
94
4
HOH
HOH
489
A
HOH
95
4
HOH
HOH
490
A
HOH
96
4
HOH
HOH
491
A
HOH
97
4
HOH
HOH
492
A
HOH
98
4
HOH
HOH
493
A
HOH
99
4
HOH
HOH
494
A
HOH
100
4
HOH
HOH
495
A
HOH
101
4
HOH
HOH
496
A
HOH
102
4
HOH
HOH
497
A
HOH
103
4
HOH
HOH
498
A
HOH
104
4
HOH
HOH
499
A
HOH
105
4
HOH
HOH
500
A
HOH
106
4
HOH
HOH
501
A
HOH
107
4
HOH
HOH
502
A
HOH
108
4
HOH
HOH
503
A
HOH
109
4
HOH
HOH
504
A
HOH
110
4
HOH
HOH
505
A
HOH
111
4
HOH
HOH
506
A
HOH
112
4
HOH
HOH
507
A
HOH
113
4
HOH
HOH
508
A
HOH
114
4
HOH
HOH
509
A
HOH
115
4
HOH
HOH
510
A
HOH
116
4
HOH
HOH
511
A
HOH
117
4
HOH
HOH
512
A
HOH
118
4
HOH
HOH
513
A
HOH
119
4
HOH
HOH
514
A
HOH
120
4
HOH
HOH
515
A
HOH
121
4
HOH
HOH
516
A
HOH
122
4
HOH
HOH
517
A
HOH
125
4
HOH
HOH
518
A
HOH
126
4
HOH
HOH
519
A
HOH
127
4
HOH
HOH
520
A
HOH
128
4
HOH
HOH
521
A
HOH
129
4
HOH
HOH
522
A
HOH
130
4
HOH
HOH
523
A
HOH
131
4
HOH
HOH
524
A
HOH
132
4
HOH
HOH
525
A
HOH
133
4
HOH
HOH
526
A
HOH
134
4
HOH
HOH
527
A
HOH
135
4
HOH
HOH
528
A
HOH
136
4
HOH
HOH
529
A
HOH
137
4
HOH
HOH
530
A
HOH
138
4
HOH
HOH
531
A
HOH
139
4
HOH
HOH
532
A
HOH
140
4
HOH
HOH
533
A
HOH
141
4
HOH
HOH
534
A
HOH
142
4
HOH
HOH
535
A
HOH
143
4
HOH
HOH
536
A
HOH
144
4
HOH
HOH
537
A
HOH
145
4
HOH
HOH
538
A
HOH
146
4
HOH
HOH
539
A
HOH
147
4
HOH
HOH
540
A
HOH
148
4
HOH
HOH
541
A
HOH
150
4
HOH
HOH
542
A
HOH
151
4
HOH
HOH
543
A
HOH
152
4
HOH
HOH
544
A
HOH
153
4
HOH
HOH
545
A
HOH
154
4
HOH
HOH
546
A
HOH
155
4
HOH
HOH
547
A
HOH
156
4
HOH
HOH
548
A
HOH
157
4
HOH
HOH
549
A
HOH
158
4
HOH
HOH
550
A
HOH
159
4
HOH
HOH
551
A
HOH
160
4
HOH
HOH
552
A
HOH
161
4
HOH
HOH
553
A
HOH
162
4
HOH
HOH
554
A
HOH
163
4
HOH
HOH
555
A
HOH
164
4
HOH
HOH
556
A
HOH
165
4
HOH
HOH
557
A
HOH
166
4
HOH
HOH
558
A
HOH
167
4
HOH
HOH
559
A
HOH
168
4
HOH
HOH
560
A
HOH
169
4
HOH
HOH
561
A
HOH
170
4
HOH
HOH
562
A
HOH
171
4
HOH
HOH
563
A
HOH
172
4
HOH
HOH
564
A
HOH
173
4
HOH
HOH
565
A
HOH
174
4
HOH
HOH
566
A
HOH
175
4
HOH
HOH
567
A
HOH
176
4
HOH
HOH
568
A
HOH
177
4
HOH
HOH
569
A
HOH
178
4
HOH
HOH
570
A
HOH
179
4
HOH
HOH
571
A
HOH
180
4
HOH
HOH
572
A
HOH
181
4
HOH
HOH
573
A
HOH
182
4
HOH
HOH
574
A
HOH
184
4
HOH
HOH
575
A
HOH
185
4
HOH
HOH
576
A
HOH
186
4
HOH
HOH
577
A
HOH
187
4
HOH
HOH
578
A
HOH
188
4
HOH
HOH
579
A
HOH
189
4
HOH
HOH
580
A
HOH
190
4
HOH
HOH
581
A
HOH
191
4
HOH
HOH
582
A
HOH
192
4
HOH
HOH
583
A
HOH
193
4
HOH
HOH
584
A
HOH
194
4
HOH
HOH
585
A
HOH
196
4
HOH
HOH
586
A
HOH
197
4
HOH
HOH
587
A
HOH
198
4
HOH
HOH
588
A
HOH
199
4
HOH
HOH
589
A
HOH
200
4
HOH
HOH
590
A
HOH
201
4
HOH
HOH
591
A
HOH
202
4
HOH
HOH
592
A
HOH
203
4
HOH
HOH
593
A
HOH
204
4
HOH
HOH
594
A
HOH
205
4
HOH
HOH
595
A
HOH
206
4
HOH
HOH
596
A
HOH
208
4
HOH
HOH
597
A
HOH
209
4
HOH
HOH
598
A
HOH
210
4
HOH
HOH
599
A
HOH
211
4
HOH
HOH
600
A
HOH
212
4
HOH
HOH
601
A
HOH
213
4
HOH
HOH
602
A
HOH
214
4
HOH
HOH
603
A
HOH
216
4
HOH
HOH
604
A
HOH
217
4
HOH
HOH
605
A
HOH
218
4
HOH
HOH
606
A
HOH
219
4
HOH
HOH
607
A
HOH
220
4
HOH
HOH
608
A
HOH
222
4
HOH
HOH
609
A
HOH
224
4
HOH
HOH
610
A
HOH
226
4
HOH
HOH
611
A
HOH
227
4
HOH
HOH
612
A
HOH
229
4
HOH
HOH
613
A
HOH
230
4
HOH
HOH
614
A
HOH
231
4
HOH
HOH
615
A
HOH
232
4
HOH
HOH
616
A
HOH
233
4
HOH
HOH
617
A
HOH
234
4
HOH
HOH
618
A
HOH
236
4
HOH
HOH
619
A
HOH
237
4
HOH
HOH
620
A
HOH
238
4
HOH
HOH
621
A
HOH
239
4
HOH
HOH
622
A
HOH
240
4
HOH
HOH
623
A
HOH
241
4
HOH
HOH
624
A
HOH
243
4
HOH
HOH
625
A
HOH
244
4
HOH
HOH
626
A
HOH
245
4
HOH
HOH
627
A
HOH
247
4
HOH
HOH
628
A
HOH
248
4
HOH
HOH
629
A
HOH
249
4
HOH
HOH
630
A
HOH
250
4
HOH
HOH
631
A
HOH
251
4
HOH
HOH
632
A
HOH
252
4
HOH
HOH
633
A
HOH
256
4
HOH
HOH
634
A
HOH
257
4
HOH
HOH
635
A
HOH
258
4
HOH
HOH
636
A
HOH
259
4
HOH
HOH
637
A
HOH
260
4
HOH
HOH
638
A
HOH
261
4
HOH
HOH
639
A
HOH
262
4
HOH
HOH
640
A
HOH
263
4
HOH
HOH
641
A
HOH
264
4
HOH
HOH
642
A
HOH
265
4
HOH
HOH
643
A
HOH
266
4
HOH
HOH
644
A
HOH
267
4
HOH
HOH
645
A
HOH
268
4
HOH
HOH
646
A
HOH
271
4
HOH
HOH
647
A
HOH
272
4
HOH
HOH
648
A
HOH
273
4
HOH
HOH
649
A
HOH
274
4
HOH
HOH
650
A
HOH
275
4
HOH
HOH
651
A
HOH
276
4
HOH
HOH
652
A
HOH
277
4
HOH
HOH
653
A
HOH
278
4
HOH
HOH
654
A
HOH
279
4
HOH
HOH
655
A
HOH
280
4
HOH
HOH
656
A
HOH
281
4
HOH
HOH
657
A
HOH
282
4
HOH
HOH
658
A
HOH
283
4
HOH
HOH
659
A
HOH
284
4
HOH
HOH
660
A
HOH
285
4
HOH
HOH
661
A
HOH
286
4
HOH
HOH
662
A
HOH
287
4
HOH
HOH
663
A
HOH
288
4
HOH
HOH
664
A
HOH
289
4
HOH
HOH
665
A
HOH
290
4
HOH
HOH
666
A
HOH
291
4
HOH
HOH
667
A
HOH
292
4
HOH
HOH
668
A
HOH
293
4
HOH
HOH
669
A
HOH
294
4
HOH
HOH
670
A
HOH
295
4
HOH
HOH
671
A
HOH
296
4
HOH
HOH
672
A
HOH
297
4
HOH
HOH
673
A
HOH
298
4
HOH
HOH
674
A
HOH
299
4
HOH
HOH
675
A
HOH
300
4
HOH
HOH
676
A
HOH
301
4
HOH
HOH
677
A
HOH
302
4
HOH
HOH
678
A
HOH
303
4
HOH
HOH
679
A
HOH
304
4
HOH
HOH
680
A
HOH
305
4
HOH
HOH
681
A
HOH
306
4
HOH
HOH
682
A
HOH
307
4
HOH
HOH
683
A
HOH
308
4
HOH
HOH
684
A
HOH
309
4
HOH
HOH
685
A
HOH
310
4
HOH
HOH
686
A
HOH
311
4
HOH
HOH
687
A
HOH
312
4
HOH
HOH
688
A
HOH
313
4
HOH
HOH
689
A
HOH
314
4
HOH
HOH
690
A
HOH
315
4
HOH
HOH
691
A
HOH
316
4
HOH
HOH
692
A
HOH
317
4
HOH
HOH
693
A
HOH
318
4
HOH
HOH
694
A
HOH
319
4
HOH
HOH
695
A
HOH
320
4
HOH
HOH
696
A
HOH
321
4
HOH
HOH
697
A
HOH
322
4
HOH
HOH
698
A
HOH
323
4
HOH
HOH
699
A
HOH
324
4
HOH
HOH
700
A
HOH
325
4
HOH
HOH
701
A
HOH
326
4
HOH
HOH
702
A
HOH
327
4
HOH
HOH
703
A
HOH
328
4
HOH
HOH
704
A
HOH
329
4
HOH
HOH
705
A
HOH
330
4
HOH
HOH
706
A
HOH
331
4
HOH
HOH
707
A
HOH
332
4
HOH
HOH
708
A
HOH
333
4
HOH
HOH
709
A
HOH
334
4
HOH
HOH
710
A
HOH
335
4
HOH
HOH
711
A
HOH
336
4
HOH
HOH
712
A
HOH
337
4
HOH
HOH
713
A
HOH
338
4
HOH
HOH
714
A
HOH
339
4
HOH
HOH
715
A
HOH
340
4
HOH
HOH
716
A
HOH
341
4
HOH
HOH
717
A
HOH
342
4
HOH
HOH
718
A
HOH
343
4
HOH
HOH
719
A
HOH
344
4
HOH
HOH
720
A
HOH
345
4
HOH
HOH
721
A
HOH
346
4
HOH
HOH
722
A
HOH
347
4
HOH
HOH
723
A
HOH
348
4
HOH
HOH
724
A
HOH
349
4
HOH
HOH
725
A
HOH
350
4
HOH
HOH
726
A
HOH
351
4
HOH
HOH
727
A
HOH
352
4
HOH
HOH
728
A
HOH
353
4
HOH
HOH
729
A
HOH
354
4
HOH
HOH
730
A
HOH
355
4
HOH
HOH
731
A
HOH
356
4
HOH
HOH
732
A
HOH
357
4
HOH
HOH
733
A
HOH
358
4
HOH
HOH
734
A
HOH
359
4
HOH
HOH
735
A
HOH
360
4
HOH
HOH
736
A
HOH
361
4
HOH
HOH
737
A
HOH
362
4
HOH
HOH
738
A
HOH
363
4
HOH
HOH
739
A
HOH
364
4
HOH
HOH
740
A
HOH
365
4
HOH
HOH
741
A
HOH
366
4
HOH
HOH
742
A
HOH
367
4
HOH
HOH
743
A
HOH
368
4
HOH
HOH
744
A
HOH
369
4
HOH
HOH
745
A
HOH
370
4
HOH
HOH
746
A
HOH
371
4
HOH
HOH
747
A
HOH
372
4
HOH
HOH
748
A
HOH
373
4
HOH
HOH
749
A
HOH
374
4
HOH
HOH
750
A
HOH
375
4
HOH
HOH
751
A
HOH
376
4
HOH
HOH
752
A
HOH
377
4
HOH
HOH
753
A
HOH
378
4
HOH
HOH
754
A
HOH
379
4
HOH
HOH
755
A
HOH
380
4
HOH
HOH
756
A
HOH
381
4
HOH
HOH
757
A
HOH
382
4
HOH
HOH
758
A
HOH
383
4
HOH
HOH
759
A
HOH
384
4
HOH
HOH
760
A
HOH
386
4
HOH
HOH
761
A
HOH
387
4
HOH
HOH
762
A
HOH
388
4
HOH
HOH
763
A
HOH
389
4
HOH
HOH
764
A
HOH
390
4
HOH
HOH
765
A
HOH
391
4
HOH
HOH
766
A
HOH
392
4
HOH
HOH
767
A
HOH
393
4
HOH
HOH
768
A
HOH
394
4
HOH
HOH
769
A
HOH
396
4
HOH
HOH
770
A
HOH
397
4
HOH
HOH
771
A
HOH
398
4
HOH
HOH
772
A
HOH
399
4
HOH
HOH
773
A
HOH
400
4
HOH
HOH
774
A
HOH
401
4
HOH
HOH
775
A
HOH
402
4
HOH
HOH
776
A
HOH
403
4
HOH
HOH
777
A
HOH
405
4
HOH
HOH
778
A
HOH
407
4
HOH
HOH
779
A
HOH
408
4
HOH
HOH
780
A
HOH
409
4
HOH
HOH
781
A
HOH
410
4
HOH
HOH
782
A
HOH
411
4
HOH
HOH
783
A
HOH
412
4
HOH
HOH
784
A
HOH
413
4
HOH
HOH
785
A
HOH
414
4
HOH
HOH
786
A
HOH
415
4
HOH
HOH
787
A
HOH
416
4
HOH
HOH
788
A
HOH
417
4
HOH
HOH
789
A
HOH
418
4
HOH
HOH
790
A
HOH
419
4
HOH
HOH
791
A
HOH
420
4
HOH
HOH
792
A
HOH
421
4
HOH
HOH
793
A
HOH
422
4
HOH
HOH
794
A
HOH
423
4
HOH
HOH
795
A
HOH
424
4
HOH
HOH
796
A
HOH
425
4
HOH
HOH
797
A
HOH
426
4
HOH
HOH
798
A
HOH
427
4
HOH
HOH
799
A
HOH
428
4
HOH
HOH
800
A
HOH
429
4
HOH
HOH
801
A
HOH
430
4
HOH
HOH
802
A
HOH
431
4
HOH
HOH
803
A
HOH
432
4
HOH
HOH
804
A
HOH
433
4
HOH
HOH
805
A
HOH
434
4
HOH
HOH
806
A
HOH
435
4
HOH
HOH
807
A
LEU
4
n
1
LEU
4
A
VAL
5
n
2
VAL
5
A
HIS
6
n
3
HIS
6
A
VAL
7
n
4
VAL
7
A
ALA
8
n
5
ALA
8
A
SER
9
n
6
SER
9
A
VAL
10
n
7
VAL
10
A
GLU
11
n
8
GLU
11
A
LYS
12
n
9
LYS
12
A
GLY
13
n
10
GLY
13
A
ARG
14
n
11
ARG
14
A
SER
15
n
12
SER
15
A
TYR
16
n
13
TYR
16
A
GLU
17
n
14
GLU
17
A
ASP
18
n
15
ASP
18
A
PHE
19
n
16
PHE
19
A
GLN
20
n
17
GLN
20
A
LYS
21
n
18
LYS
21
A
VAL
22
n
19
VAL
22
A
TYR
23
n
20
TYR
23
A
ASN
24
n
21
ASN
24
A
ALA
25
n
22
ALA
25
A
ILE
26
n
23
ILE
26
A
ALA
27
n
24
ALA
27
A
LEU
28
n
25
LEU
28
A
LYS
29
n
26
LYS
29
A
LEU
30
n
27
LEU
30
A
ARG
31
n
28
ARG
31
A
GLU
32
n
29
GLU
32
A
ASP
33
n
30
ASP
33
A
ASP
34
n
31
ASP
34
A
GLU
35
n
32
GLU
35
A
TYR
36
n
33
TYR
36
A
ASP
37
n
34
ASP
37
A
ASN
38
n
35
ASN
38
A
TYR
39
n
36
TYR
39
A
ILE
40
n
37
ILE
40
A
GLY
41
n
38
GLY
41
A
TYR
42
n
39
TYR
42
A
GLY
43
n
40
GLY
43
A
PRO
44
n
41
PRO
44
A
VAL
45
n
42
VAL
45
A
LEU
46
n
43
LEU
46
A
VAL
47
n
44
VAL
47
A
ARG
48
n
45
ARG
48
A
LEU
49
n
46
LEU
49
A
ALA
50
n
47
ALA
50
A
TRP
51
n
48
TRP
51
A
HIS
52
n
49
HIS
52
A
ILE
53
n
50
ILE
53
A
SER
54
n
51
SER
54
A
GLY
55
n
52
GLY
55
A
THR
56
n
53
THR
56
A
TRP
57
n
54
TRP
57
A
ASP
58
n
55
ASP
58
A
LYS
59
n
56
LYS
59
A
HIS
60
n
57
HIS
60
A
ASP
61
n
58
ASP
61
A
ASN
62
n
59
ASN
62
A
THR
63
n
60
THR
63
A
GLY
64
n
61
GLY
64
A
GLY
65
n
62
GLY
65
A
SER
66
n
63
SER
66
A
TYR
67
n
64
TYR
67
A
GLY
68
n
65
GLY
68
A
GLY
69
n
66
GLY
69
A
THR
70
n
67
THR
70
A
TYR
71
n
68
TYR
71
A
ARG
72
n
69
ARG
72
A
PHE
73
n
70
PHE
73
A
LYS
74
n
71
LYS
74
A
LYS
75
n
72
LYS
75
A
GLU
76
n
73
GLU
76
A
PHE
77
n
74
PHE
77
A
ASN
78
n
75
ASN
78
A
ASP
79
n
76
ASP
79
A
PRO
80
n
77
PRO
80
A
SER
81
n
78
SER
81
A
ASN
82
n
79
ASN
82
A
ALA
83
n
80
ALA
83
A
GLY
84
n
81
GLY
84
A
LEU
85
n
82
LEU
85
A
GLN
86
n
83
GLN
86
A
ASN
87
n
84
ASN
87
A
GLY
88
n
85
GLY
88
A
PHE
89
n
86
PHE
89
A
LYS
90
n
87
LYS
90
A
PHE
91
n
88
PHE
91
A
LEU
92
n
89
LEU
92
A
GLU
93
n
90
GLU
93
A
PRO
94
n
91
PRO
94
A
ILE
95
n
92
ILE
95
A
HIS
96
n
93
HIS
96
A
LYS
97
n
94
LYS
97
A
GLU
98
n
95
GLU
98
A
PHE
99
n
96
PHE
99
A
PRO
100
n
97
PRO
100
A
TRP
101
n
98
TRP
101
A
ILE
102
n
99
ILE
102
A
SER
103
n
100
SER
103
A
SER
104
n
101
SER
104
A
GLY
105
n
102
GLY
105
A
ASP
106
n
103
ASP
106
A
LEU
107
n
104
LEU
107
A
PHE
108
n
105
PHE
108
A
SER
109
n
106
SER
109
A
LEU
110
n
107
LEU
110
A
GLY
111
n
108
GLY
111
A
GLY
112
n
109
GLY
112
A
VAL
113
n
110
VAL
113
A
THR
114
n
111
THR
114
A
ALA
115
n
112
ALA
115
A
VAL
116
n
113
VAL
116
A
GLN
117
n
114
GLN
117
A
GLU
118
n
115
GLU
118
A
MET
119
n
116
MET
119
A
GLN
120
n
117
GLN
120
A
GLY
121
n
118
GLY
121
A
PRO
122
n
119
PRO
122
A
LYS
123
n
120
LYS
123
A
ILE
124
n
121
ILE
124
A
PRO
125
n
122
PRO
125
A
TRP
126
n
123
TRP
126
A
ARG
127
n
124
ARG
127
A
CYS
128
n
125
CYS
128
A
GLY
129
n
126
GLY
129
A
ARG
130
n
127
ARG
130
A
VAL
131
n
128
VAL
131
A
ASP
132
n
129
ASP
132
A
THR
133
n
130
THR
133
A
PRO
134
n
131
PRO
134
A
GLU
135
n
132
GLU
135
A
ASP
136
n
133
ASP
136
A
THR
137
n
134
THR
137
A
THR
138
n
135
THR
138
A
PRO
139
n
136
PRO
139
A
ASP
140
n
137
ASP
140
A
ASN
141
n
138
ASN
141
A
GLY
142
n
139
GLY
142
A
ARG
143
n
140
ARG
143
A
LEU
144
n
141
LEU
144
A
PRO
145
n
142
PRO
145
A
ASP
146
n
143
ASP
146
A
ALA
147
n
144
ALA
147
A
ASP
148
n
145
ASP
148
A
LYS
149
n
146
LYS
149
A
ASP
150
n
147
ASP
150
A
ALA
151
n
148
ALA
151
A
GLY
152
n
149
GLY
152
A
TYR
153
n
150
TYR
153
A
VAL
154
n
151
VAL
154
A
ARG
155
n
152
ARG
155
A
THR
156
n
153
THR
156
A
PHE
157
n
154
PHE
157
A
PHE
158
n
155
PHE
158
A
GLN
159
n
156
GLN
159
A
ARG
160
n
157
ARG
160
A
LEU
161
n
158
LEU
161
A
ASN
162
n
159
ASN
162
A
MET
163
n
160
MET
163
A
ASN
164
n
161
ASN
164
A
ASP
165
n
162
ASP
165
A
ARG
166
n
163
ARG
166
A
GLU
167
n
164
GLU
167
A
VAL
168
n
165
VAL
168
A
VAL
169
n
166
VAL
169
A
ALA
170
n
167
ALA
170
A
LEU
171
n
168
LEU
171
A
MET
172
n
169
MET
172
A
GLY
173
n
170
GLY
173
A
ALA
174
n
171
ALA
174
A
HIS
175
n
172
HIS
175
A
ALA
176
n
173
ALA
176
A
LEU
177
n
174
LEU
177
A
GLY
178
n
175
GLY
178
A
LYS
179
n
176
LYS
179
A
THR
180
n
177
THR
180
A
HIS
181
n
178
HIS
181
A
LEU
182
n
179
LEU
182
A
LYS
183
n
180
LYS
183
A
ASN
184
n
181
ASN
184
A
SER
185
n
182
SER
185
A
GLY
186
n
183
GLY
186
A
TYR
187
n
184
TYR
187
A
GLU
188
n
185
GLU
188
A
GLY
189
n
186
GLY
189
A
GLY
190
n
187
GLY
190
A
GLY
191
n
188
GLY
191
A
ALA
192
n
189
ALA
192
A
ASN
193
n
190
ASN
193
A
ASN
194
n
191
ASN
194
A
VAL
195
n
192
VAL
195
A
PHE
196
n
193
PHE
196
A
THR
197
n
194
THR
197
A
ASN
198
n
195
ASN
198
A
GLU
199
n
196
GLU
199
A
PHE
200
n
197
PHE
200
A
TYR
201
n
198
TYR
201
A
LEU
202
n
199
LEU
202
A
ASN
203
n
200
ASN
203
A
LEU
204
n
201
LEU
204
A
LEU
205
n
202
LEU
205
A
ASN
206
n
203
ASN
206
A
GLU
207
n
204
GLU
207
A
ASP
208
n
205
ASP
208
A
TRP
209
n
206
TRP
209
A
LYS
210
n
207
LYS
210
A
LEU
211
n
208
LEU
211
A
GLU
212
n
209
GLU
212
A
LYS
213
n
210
LYS
213
A
ASN
214
n
211
ASN
214
A
ASP
215
n
212
ASP
215
A
ALA
216
n
213
ALA
216
A
ASN
217
n
214
ASN
217
A
ASN
218
n
215
ASN
218
A
GLU
219
n
216
GLU
219
A
GLN
220
n
217
GLN
220
A
TRP
221
n
218
TRP
221
A
ASP
222
n
219
ASP
222
A
SER
223
n
220
SER
223
A
LYS
224
n
221
LYS
224
A
SER
225
n
222
SER
225
A
GLY
226
n
223
GLY
226
A
TYR
227
n
224
TYR
227
A
MET
228
n
225
MET
228
A
MET
229
n
226
MET
229
A
LEU
230
n
227
LEU
230
A
PRO
231
n
228
PRO
231
A
THR
232
n
229
THR
232
A
ASP
233
n
230
ASP
233
A
TYR
234
n
231
TYR
234
A
SER
235
n
232
SER
235
A
LEU
236
n
233
LEU
236
A
ILE
237
n
234
ILE
237
A
GLN
238
n
235
GLN
238
A
ASP
239
n
236
ASP
239
A
PRO
240
n
237
PRO
240
A
LYS
241
n
238
LYS
241
A
TYR
242
n
239
TYR
242
A
LEU
243
n
240
LEU
243
A
SER
244
n
241
SER
244
A
ILE
245
n
242
ILE
245
A
VAL
246
n
243
VAL
246
A
LYS
247
n
244
LYS
247
A
GLU
248
n
245
GLU
248
A
TYR
249
n
246
TYR
249
A
ALA
250
n
247
ALA
250
A
ASN
251
n
248
ASN
251
A
ASP
252
n
249
ASP
252
A
GLN
253
n
250
GLN
253
A
ASP
254
n
251
ASP
254
A
LYS
255
n
252
LYS
255
A
PHE
256
n
253
PHE
256
A
PHE
257
n
254
PHE
257
A
LYS
258
n
255
LYS
258
A
ASP
259
n
256
ASP
259
A
PHE
260
n
257
PHE
260
A
SER
261
n
258
SER
261
A
LYS
262
n
259
LYS
262
A
ALA
263
n
260
ALA
263
A
PHE
264
n
261
PHE
264
A
GLU
265
n
262
GLU
265
A
LYS
266
n
263
LYS
266
A
LEU
267
n
264
LEU
267
A
LEU
268
n
265
LEU
268
A
GLU
269
n
266
GLU
269
A
ASN
270
n
267
ASN
270
A
GLY
271
n
268
GLY
271
A
ILE
272
n
269
ILE
272
A
THR
273
n
270
THR
273
A
PHE
274
n
271
PHE
274
A
PRO
275
n
272
PRO
275
A
LYS
276
n
273
LYS
276
A
ASP
277
n
274
ASP
277
A
ALA
278
n
275
ALA
278
A
PRO
279
n
276
PRO
279
A
SER
280
n
277
SER
280
A
PRO
281
n
278
PRO
281
A
PHE
282
n
279
PHE
282
A
ILE
283
n
280
ILE
283
A
PHE
284
n
281
PHE
284
A
LYS
285
n
282
LYS
285
A
THR
286
n
283
THR
286
A
LEU
287
n
284
LEU
287
A
GLU
288
n
285
GLU
288
A
GLU
289
n
286
GLU
289
A
GLN
290
n
287
GLN
290
A
GLY
291
n
288
GLY
291
A
LEU
292
n
289
LEU
292
A
author_and_software_defined_assembly
PISA
1
monomeric
A
HIS
175
A
NE2
HIS
172
1_555
A
HEM
301
B
FE
HEM
1_555
A
HEM
301
B
NA
HEM
1_555
95.6
A
HIS
175
A
NE2
HIS
172
1_555
A
HEM
301
B
FE
HEM
1_555
A
HEM
301
B
NB
HEM
1_555
90.1
A
HEM
301
B
NA
HEM
1_555
A
HEM
301
B
FE
HEM
1_555
A
HEM
301
B
NB
HEM
1_555
90.1
A
HIS
175
A
NE2
HIS
172
1_555
A
HEM
301
B
FE
HEM
1_555
A
HEM
301
B
NC
HEM
1_555
89.3
A
HEM
301
B
NA
HEM
1_555
A
HEM
301
B
FE
HEM
1_555
A
HEM
301
B
NC
HEM
1_555
175.1
A
HEM
301
B
NB
HEM
1_555
A
HEM
301
B
FE
HEM
1_555
A
HEM
301
B
NC
HEM
1_555
90.3
A
HIS
175
A
NE2
HIS
172
1_555
A
HEM
301
B
FE
HEM
1_555
A
HEM
301
B
ND
HEM
1_555
93.2
A
HEM
301
B
NA
HEM
1_555
A
HEM
301
B
FE
HEM
1_555
A
HEM
301
B
ND
HEM
1_555
89.3
A
HEM
301
B
NB
HEM
1_555
A
HEM
301
B
FE
HEM
1_555
A
HEM
301
B
ND
HEM
1_555
176.7
A
HEM
301
B
NC
HEM
1_555
A
HEM
301
B
FE
HEM
1_555
A
HEM
301
B
ND
HEM
1_555
89.9
A
HIS
175
A
NE2
HIS
172
1_555
A
HEM
301
B
FE
HEM
1_555
A
HOH
548
E
O
HOH
1_555
176.4
A
HEM
301
B
NA
HEM
1_555
A
HEM
301
B
FE
HEM
1_555
A
HOH
548
E
O
HOH
1_555
85.8
A
HEM
301
B
NB
HEM
1_555
A
HEM
301
B
FE
HEM
1_555
A
HOH
548
E
O
HOH
1_555
86.5
A
HEM
301
B
NC
HEM
1_555
A
HEM
301
B
FE
HEM
1_555
A
HOH
548
E
O
HOH
1_555
89.4
A
HEM
301
B
ND
HEM
1_555
A
HEM
301
B
FE
HEM
1_555
A
HOH
548
E
O
HOH
1_555
90.2
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
HIS
6
A
N
HIS
3
A
O
THR
273
A
O
THR
270
A
N
THR
180
A
N
THR
177
A
O
GLY
189
A
O
GLY
186
A
N
LYS
210
A
N
LYS
207
A
O
ASP
222
A
O
ASP
219
A
N
TRP
221
A
N
TRP
218
A
O
MET
229
A
O
MET
226
1
3.04
0.50
120.30
123.34
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
143
143
143
N
1
A
ASP
148
A
-101.13
45.80
1
A
ASP
252
-156.36
88.13
1
A
PRO
275
-49.39
151.48
47.550
17.7664
7.150
0.1100
0.0000
0.0000
0.9100
0.0000
-1.0200
0.9700
0.9640
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES: REFINED INDIVIDUALLY
0.1618
0.1408
0.1429
1.6000
32.04
5354
53152
10.1000
97.3900
1.000
0.200
0.9610
0.0350
RANDOM
1
THROUGHOUT
0.000
MOLECULAR REPLACEMENT
0.0690
0.0680
0.8000
0.8000
1.4000
MAXIMUM LIKELIHOOD
BABINET MODEL WITH MASK
1.6000
32.04
407
2796
61
0
2328
0.018
0.022
2727
0.001
0.020
1848
1.629
2.010
3731
0.977
3.001
4508
5.653
5.000
337
35.330
25.245
143
12.882
15.000
458
24.524
15.000
11
0.113
0.200
355
0.009
0.021
3178
0.001
0.020
567
0.956
1.500
1587
0.310
1.500
642
1.630
2.000
2573
2.430
3.000
1140
3.805
4.500
1153
0.1640
0.1230
1.6400
376
3475
3851
20
96.6900
1.60
61.0800
4JMA
53152
1
refinement
Garib N. Murshudov
garib@ysbl.york.ac.uk
Fortran_77
http://www.ccp4.ac.uk/dist/html/refmac5.html
REFMAC
program
5.5.0109
data extraction
PDB
deposit@deposit.rcsb.org
April 22, 2011
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.11
data collection
ADSC
Quantum
data reduction
DENZO
data scaling
SCALEPACK
phasing
PHASER
Crystal structure of Cytochrome C Peroxidase W191G-Gateless in complex with 3-Fluorocatechol
1
N
N
2
N
N
3
N
N
3
N
N
4
N
N
A
SER
15
A
SER
12
HELX_P
A
ASP
33
A
ASP
30
1
1
19
A
GLU
35
A
GLU
32
HELX_P
A
ILE
40
A
ILE
37
1
2
6
A
TYR
42
A
TYR
39
HELX_P
A
GLY
55
A
GLY
52
1
3
14
A
GLY
69
A
GLY
66
HELX_P
A
ARG
72
A
ARG
69
5
4
4
A
PHE
73
A
PHE
70
HELX_P
A
ASN
78
A
ASN
75
1
5
6
A
ASP
79
A
ASP
76
HELX_P
A
GLY
84
A
GLY
81
5
6
6
A
LEU
85
A
LEU
82
HELX_P
A
PHE
99
A
PHE
96
1
7
15
A
SER
103
A
SER
100
HELX_P
A
MET
119
A
MET
116
1
8
17
A
PRO
134
A
PRO
131
HELX_P
A
THR
138
A
THR
135
5
9
5
A
ASP
150
A
ASP
147
HELX_P
A
ARG
160
A
ARG
157
1
10
11
A
ASN
164
A
ASN
161
HELX_P
A
GLY
173
A
GLY
170
1
11
10
A
ALA
174
A
ALA
171
HELX_P
A
LEU
177
A
LEU
174
5
12
4
A
HIS
181
A
HIS
178
HELX_P
A
GLY
186
A
GLY
183
1
13
6
A
ASN
198
A
ASN
195
HELX_P
A
GLU
207
A
GLU
204
1
14
10
A
LEU
230
A
LEU
227
HELX_P
A
ASP
239
A
ASP
236
1
15
10
A
ASP
239
A
ASP
236
HELX_P
A
ASN
251
A
ASN
248
1
16
13
A
ASP
252
A
ASP
249
HELX_P
A
ASN
270
A
ASN
267
1
17
19
A
THR
286
A
THR
283
HELX_P
A
GLY
291
A
GLY
288
1
18
6
metalc
2.066
A
HIS
175
A
NE2
HIS
172
1_555
A
HEM
301
B
FE
HEM
1_555
metalc
2.010
A
HEM
301
B
FE
HEM
1_555
A
HOH
548
E
O
HOH
1_555
OXIDOREDUCTASE
Model system, bulk solvent, ordered waters, docking, ligand binding, free energy calculation, molecular dynamics, OXIDOREDUCTASE
B3LRE1_YEAS1
UNP
1
72
B3LRE1
LVHVASVEKGRSYEDFQKVYNAIALKLREDDEYDNYIGYGPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNA
GLQNGFKFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRLNM
NDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPK
YLSIVKEYANDQDKFFKDFSKAFEKLLENGITFPKDAPSPFIFKTLEEQGL
72
362
4JMA
4
292
B3LRE1
A
1
1
289
1
PRO
engineered mutation
GLY
190
4JMA
A
B3LRE1
UNP
258
187
1
TRP
engineered mutation
GLY
191
4JMA
A
B3LRE1
UNP
259
188
1
GLY
deletion
4JMA
A
B3LRE1
UNP
260
1
ALA
deletion
4JMA
A
B3LRE1
UNP
261
2
2
3
parallel
anti-parallel
anti-parallel
anti-parallel
A
HIS
6
A
HIS
3
A
VAL
7
A
VAL
4
A
ILE
272
A
ILE
269
A
THR
273
A
THR
270
A
GLY
178
A
GLY
175
A
THR
180
A
THR
177
A
GLY
189
A
GLY
186
A
ASN
193
A
ASN
190
A
TRP
209
A
TRP
206
A
LYS
213
A
LYS
210
A
GLU
219
A
GLU
216
A
SER
223
A
SER
220
A
MET
228
A
MET
225
A
MET
229
A
MET
226
BINDING SITE FOR RESIDUE HEM A 301
A
HEM
301
Software
24
BINDING SITE FOR RESIDUE 3FA A 302
A
3FA
302
Software
14
BINDING SITE FOR RESIDUE 3FA A 303
A
3FA
303
Software
7
A
PRO
44
A
PRO
41
24
1_555
A
ARG
48
A
ARG
45
24
1_555
A
TRP
51
A
TRP
48
24
1_555
A
PRO
145
A
PRO
142
24
1_555
A
ASP
146
A
ASP
143
24
1_555
A
ALA
147
A
ALA
144
24
1_555
A
LEU
171
A
LEU
168
24
1_555
A
MET
172
A
MET
169
24
1_555
A
ALA
174
A
ALA
171
24
1_555
A
HIS
175
A
HIS
172
24
1_555
A
LEU
177
A
LEU
174
24
1_555
A
GLY
178
A
GLY
175
24
1_555
A
LYS
179
A
LYS
176
24
1_555
A
THR
180
A
THR
177
24
1_555
A
HIS
181
A
HIS
178
24
1_555
A
ASN
184
A
ASN
181
24
1_555
A
SER
185
A
SER
182
24
1_555
A
LEU
230
A
LEU
227
24
1_555
A
THR
232
A
THR
229
24
1_555
A
3FA
302
C
3FA
24
1_555
A
HOH
406
E
HOH
24
1_555
A
HOH
438
E
HOH
24
1_555
A
HOH
491
E
HOH
24
1_555
A
HOH
548
E
HOH
24
1_555
A
HIS
175
A
HIS
172
14
1_555
A
LEU
177
A
LEU
174
14
1_555
A
GLY
178
A
GLY
175
14
1_555
A
LYS
179
A
LYS
176
14
1_555
A
THR
180
A
THR
177
14
1_555
A
GLY
190
A
GLY
187
14
1_555
A
GLY
191
A
GLY
188
14
1_555
A
MET
228
A
MET
225
14
1_555
A
MET
229
A
MET
226
14
1_555
A
LEU
230
A
LEU
227
14
1_555
A
ASP
233
A
ASP
230
14
1_555
A
HEM
301
B
HEM
14
1_555
A
HOH
476
E
HOH
14
1_555
A
HOH
597
E
HOH
14
1_555
A
PHE
89
A
PHE
86
7
1_555
A
GLU
93
A
GLU
90
7
1_555
A
HIS
96
A
HIS
93
7
1_555
A
SER
104
A
SER
101
7
1_555
A
LEU
107
A
LEU
104
7
1_555
A
PHE
108
A
PHE
105
7
1_555
A
HOH
539
E
HOH
7
1_555
19
P 21 21 21