0.014871 0.000000 0.000000 0.000000 0.014871 0.000000 0.000000 0.000000 0.008351 0.00000 0.00000 0.00000 Ruggiero, A. Correale, S. Berisio, R. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 67.246 67.246 119.748 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C Y 142 N C Y 143 N N Y 144 N C Y 145 N C Y 146 N N N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N O N 159 N H N 160 N H N 161 N N N 162 S C N 163 N C N 164 N O N 165 S C N 166 N C N 167 N C N 168 N C N 169 N O N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N N N 184 S C N 185 N C N 186 N O N 187 N C N 188 N C N 189 N C N 190 N C N 191 N O N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N N N 206 S C N 207 N C N 208 N O N 209 N C N 210 N C N 211 N C N 212 N C N 213 N N N 214 N O N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N N N 231 S C N 232 N C N 233 N O N 234 N C N 235 N C N 236 N S N 237 N C N 238 N O N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N N N 251 S C N 252 N C N 253 N O N 254 N C Y 255 N C Y 256 N C Y 257 N C Y 258 N C Y 259 N C Y 260 N C N 261 N O N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N N N 274 S C N 275 N C N 276 N O N 277 N C N 278 N C N 279 N C N 280 N O N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N N N 291 S C N 292 N C N 293 N O N 294 N C N 295 N O N 296 N O N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N N N 305 S C N 306 N C N 307 N O N 308 R C N 309 N O N 310 N C N 311 N O N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N N N 322 S C N 323 N C N 324 N O N 325 N C Y 326 N C Y 327 N C Y 328 N C Y 329 N N Y 330 N C Y 331 N C Y 332 N C Y 333 N C Y 334 N C N 335 N O N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N N N 349 S C N 350 N C N 351 N O N 352 N C Y 353 N C Y 354 N C Y 355 N C Y 356 N C Y 357 N C Y 358 N C N 359 N O N 360 N O N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N N N 373 S C N 374 N C N 375 N O N 376 N C N 377 N C N 378 N C N 379 N O N 380 N H N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N doub N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N doub N 244 N sing N 245 N sing N 246 N sing N 247 N sing Y 248 N doub Y 249 N sing Y 250 N sing N 251 N sing Y 252 N doub N 253 N sing Y 254 N doub N 255 N sing Y 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N doub N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N doub N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N doub N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N doub N 313 N sing N 314 N sing N 315 N sing N 316 N sing Y 317 N doub Y 318 N sing Y 319 N sing N 320 N sing Y 321 N doub Y 322 N sing Y 323 N sing N 324 N sing Y 325 N sing Y 326 N doub N 327 N sing Y 328 N doub N 329 N sing Y 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N doub N 341 N sing N 342 N sing N 343 N sing N 344 N sing Y 345 N doub Y 346 N sing Y 347 N sing N 348 N sing Y 349 N doub N 350 N sing Y 351 N doub N 352 N sing Y 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N doub N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing DK Acta Crystallogr.,Sect.D ABCRE6 0766 0907-4449 69 1697 1706 10.1107/S0907444913013085 23999293 Structures of free and inhibited forms of the L,D-transpeptidase LdtMt1 from Mycobacterium tuberculosis. 2013 10.2210/pdb4jmn/pdb pdb_00004jmn 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 mirrors CCD 2012-10-30 MARMOSAIC 225 mm CCD Si 111 CHANNEL MAD M x-ray 1 0.954 1.0 0.9784 1.0 0.9786 1.0 0.9724 1.0 BM14 ESRF 0.954, 0.9784, 0.9786, 0.9724 SYNCHROTRON ESRF BEAMLINE BM14 23640.570 Probable L,D-transpeptidase LdtA extracellular domain (UNP residues 32-251) 1 man polymer 18.015 water 299 nat water no no PLQPIPGVASVSPANGAVVGVAHPVVVTFTTPVTDRRAVERSIRISTPHNTTGHFEWVASNVVRWVPHRYWPPHTRVSVG VQELTEGFETGDALIGVASISAHTFTVSRNGEVLRTMPASLGKPSRPTPIGSFHAMSKERTVVMDSRTIGIPLNSSDGYL LTAHYAVRVTWSGVYVHSAPWSVNSQGYANVSHGCINLSPDNAAWYFDAVTVGDPIEVVG PLQPIPGVASVSPANGAVVGVAHPVVVTFTTPVTDRRAVERSIRISTPHNTTGHFEWVASNVVRWVPHRYWPPHTRVSVG VQELTEGFETGDALIGVASISAHTFTVSRNGEVLRTMPASLGKPSRPTPIGSFHAMSKERTVVMDSRTIGIPLNSSDGYL LTAHYAVRVTWSGVYVHSAPWSVNSQGYANVSHGCINLSPDNAAWYFDAVTVGDPIEVVG A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n sample ldtA, Rv0116c 1773 Mycobacterium tuberculosis 562 Escherichia coli 1 2.86 57.04 VAPOR DIFFUSION, HANGING DROP 5.6 1.24 M sodium phosphate and 0.16 M potassium phosphate, 10 mM TCEP, pH 5.6, VAPOR DIFFUSION, HANGING DROP, temperature 298K 298 chem_comp_atom chem_comp_bond database_2 repository Initial release Data collection Database references 1 0 2013-10-23 1 1 2024-02-28 _database_2.pdbx_DOI _database_2.pdbx_database_accession RCSB Y RCSB 2013-03-14 REL REL HOH water HOH 1 2 HOH HOH 301 A HOH 2 2 HOH HOH 302 A HOH 3 2 HOH HOH 303 A HOH 4 2 HOH HOH 304 A HOH 5 2 HOH HOH 305 A HOH 6 2 HOH HOH 306 A HOH 7 2 HOH HOH 307 A HOH 8 2 HOH HOH 308 A HOH 9 2 HOH HOH 309 A HOH 10 2 HOH HOH 310 A HOH 11 2 HOH HOH 311 A HOH 12 2 HOH HOH 312 A HOH 13 2 HOH HOH 313 A HOH 14 2 HOH HOH 314 A HOH 15 2 HOH HOH 315 A HOH 16 2 HOH HOH 316 A HOH 17 2 HOH HOH 317 A HOH 18 2 HOH HOH 318 A HOH 19 2 HOH HOH 319 A HOH 20 2 HOH HOH 320 A HOH 21 2 HOH HOH 321 A HOH 22 2 HOH HOH 322 A HOH 23 2 HOH HOH 323 A HOH 24 2 HOH HOH 324 A HOH 25 2 HOH HOH 325 A HOH 26 2 HOH HOH 326 A HOH 27 2 HOH HOH 327 A HOH 28 2 HOH HOH 328 A HOH 29 2 HOH HOH 329 A HOH 30 2 HOH HOH 330 A HOH 31 2 HOH HOH 331 A HOH 32 2 HOH HOH 332 A HOH 33 2 HOH HOH 333 A HOH 34 2 HOH HOH 334 A HOH 35 2 HOH HOH 335 A HOH 36 2 HOH HOH 336 A HOH 37 2 HOH HOH 337 A HOH 38 2 HOH HOH 338 A HOH 39 2 HOH HOH 339 A HOH 40 2 HOH HOH 340 A HOH 41 2 HOH HOH 341 A HOH 42 2 HOH HOH 342 A HOH 43 2 HOH HOH 343 A HOH 44 2 HOH HOH 344 A HOH 45 2 HOH HOH 345 A HOH 46 2 HOH HOH 346 A HOH 47 2 HOH HOH 347 A HOH 48 2 HOH HOH 348 A HOH 49 2 HOH HOH 349 A HOH 50 2 HOH HOH 350 A HOH 51 2 HOH HOH 351 A HOH 52 2 HOH HOH 352 A HOH 53 2 HOH HOH 353 A HOH 54 2 HOH HOH 354 A HOH 55 2 HOH HOH 355 A HOH 56 2 HOH HOH 356 A HOH 57 2 HOH HOH 357 A HOH 58 2 HOH HOH 358 A HOH 59 2 HOH HOH 359 A HOH 60 2 HOH HOH 360 A HOH 61 2 HOH HOH 361 A HOH 62 2 HOH HOH 362 A HOH 63 2 HOH HOH 363 A HOH 64 2 HOH HOH 364 A HOH 65 2 HOH HOH 365 A HOH 66 2 HOH HOH 366 A HOH 67 2 HOH HOH 367 A HOH 68 2 HOH HOH 368 A HOH 69 2 HOH HOH 369 A HOH 70 2 HOH HOH 370 A HOH 71 2 HOH HOH 371 A HOH 72 2 HOH HOH 372 A HOH 73 2 HOH HOH 373 A HOH 74 2 HOH HOH 374 A HOH 75 2 HOH HOH 375 A HOH 76 2 HOH HOH 376 A HOH 77 2 HOH HOH 377 A HOH 78 2 HOH HOH 378 A HOH 79 2 HOH HOH 379 A HOH 80 2 HOH HOH 380 A HOH 81 2 HOH HOH 381 A HOH 82 2 HOH HOH 382 A HOH 83 2 HOH HOH 383 A HOH 84 2 HOH HOH 384 A HOH 85 2 HOH HOH 385 A HOH 86 2 HOH HOH 386 A HOH 87 2 HOH HOH 387 A HOH 88 2 HOH HOH 388 A HOH 89 2 HOH HOH 389 A HOH 90 2 HOH HOH 390 A HOH 91 2 HOH HOH 391 A HOH 92 2 HOH HOH 392 A HOH 93 2 HOH HOH 393 A HOH 94 2 HOH HOH 394 A HOH 95 2 HOH HOH 395 A HOH 96 2 HOH HOH 396 A HOH 97 2 HOH HOH 397 A HOH 98 2 HOH HOH 398 A HOH 99 2 HOH HOH 399 A HOH 100 2 HOH HOH 400 A HOH 101 2 HOH HOH 401 A HOH 102 2 HOH HOH 402 A HOH 103 2 HOH HOH 403 A HOH 104 2 HOH HOH 404 A HOH 105 2 HOH HOH 405 A HOH 106 2 HOH HOH 406 A HOH 107 2 HOH HOH 407 A HOH 108 2 HOH HOH 408 A HOH 109 2 HOH HOH 409 A HOH 110 2 HOH HOH 410 A HOH 111 2 HOH HOH 411 A HOH 112 2 HOH HOH 412 A HOH 113 2 HOH HOH 413 A HOH 114 2 HOH HOH 414 A HOH 115 2 HOH HOH 415 A HOH 116 2 HOH HOH 416 A HOH 117 2 HOH HOH 417 A HOH 118 2 HOH HOH 418 A HOH 119 2 HOH HOH 419 A HOH 120 2 HOH HOH 420 A HOH 121 2 HOH HOH 421 A HOH 122 2 HOH HOH 422 A HOH 123 2 HOH HOH 423 A HOH 124 2 HOH HOH 424 A HOH 125 2 HOH HOH 425 A HOH 126 2 HOH HOH 426 A HOH 127 2 HOH HOH 427 A HOH 128 2 HOH HOH 428 A HOH 129 2 HOH HOH 429 A HOH 130 2 HOH HOH 430 A HOH 131 2 HOH HOH 431 A HOH 132 2 HOH HOH 432 A HOH 133 2 HOH HOH 433 A HOH 134 2 HOH HOH 434 A HOH 135 2 HOH HOH 435 A HOH 136 2 HOH HOH 436 A HOH 137 2 HOH HOH 437 A HOH 138 2 HOH HOH 438 A HOH 139 2 HOH HOH 439 A HOH 140 2 HOH HOH 440 A HOH 141 2 HOH HOH 441 A HOH 142 2 HOH HOH 442 A HOH 143 2 HOH HOH 443 A HOH 144 2 HOH HOH 444 A HOH 145 2 HOH HOH 445 A HOH 146 2 HOH HOH 446 A HOH 147 2 HOH HOH 447 A HOH 148 2 HOH HOH 448 A HOH 149 2 HOH HOH 449 A HOH 150 2 HOH HOH 450 A HOH 151 2 HOH HOH 451 A HOH 152 2 HOH HOH 452 A HOH 153 2 HOH HOH 453 A HOH 154 2 HOH HOH 454 A HOH 155 2 HOH HOH 455 A HOH 156 2 HOH HOH 456 A HOH 157 2 HOH HOH 457 A HOH 158 2 HOH HOH 458 A HOH 159 2 HOH HOH 459 A HOH 160 2 HOH HOH 460 A HOH 161 2 HOH HOH 461 A HOH 162 2 HOH HOH 462 A HOH 163 2 HOH HOH 463 A HOH 164 2 HOH HOH 464 A HOH 165 2 HOH HOH 465 A HOH 166 2 HOH HOH 466 A HOH 167 2 HOH HOH 467 A HOH 168 2 HOH HOH 468 A HOH 169 2 HOH HOH 469 A HOH 170 2 HOH HOH 470 A HOH 171 2 HOH HOH 471 A HOH 172 2 HOH HOH 472 A HOH 173 2 HOH HOH 473 A HOH 174 2 HOH HOH 474 A HOH 175 2 HOH HOH 475 A HOH 176 2 HOH HOH 476 A HOH 177 2 HOH HOH 477 A HOH 178 2 HOH HOH 478 A HOH 179 2 HOH HOH 479 A HOH 180 2 HOH HOH 480 A HOH 181 2 HOH HOH 481 A HOH 182 2 HOH HOH 482 A HOH 183 2 HOH HOH 483 A HOH 184 2 HOH HOH 484 A HOH 185 2 HOH HOH 485 A HOH 186 2 HOH HOH 486 A HOH 187 2 HOH HOH 487 A HOH 188 2 HOH HOH 488 A HOH 189 2 HOH HOH 489 A HOH 190 2 HOH HOH 490 A HOH 191 2 HOH HOH 491 A HOH 192 2 HOH HOH 492 A HOH 193 2 HOH HOH 493 A HOH 194 2 HOH HOH 494 A HOH 195 2 HOH HOH 495 A HOH 196 2 HOH HOH 496 A HOH 197 2 HOH HOH 497 A HOH 198 2 HOH HOH 498 A HOH 199 2 HOH HOH 499 A HOH 200 2 HOH HOH 500 A HOH 201 2 HOH HOH 501 A HOH 202 2 HOH HOH 502 A HOH 203 2 HOH HOH 503 A HOH 204 2 HOH HOH 504 A HOH 205 2 HOH HOH 505 A HOH 206 2 HOH HOH 506 A HOH 207 2 HOH HOH 507 A HOH 208 2 HOH HOH 508 A HOH 209 2 HOH HOH 509 A HOH 210 2 HOH HOH 510 A HOH 211 2 HOH HOH 511 A HOH 212 2 HOH HOH 512 A HOH 213 2 HOH HOH 513 A HOH 214 2 HOH HOH 514 A HOH 215 2 HOH HOH 515 A HOH 216 2 HOH HOH 516 A HOH 217 2 HOH HOH 517 A HOH 218 2 HOH HOH 518 A HOH 219 2 HOH HOH 519 A HOH 220 2 HOH HOH 520 A HOH 221 2 HOH HOH 521 A HOH 222 2 HOH HOH 522 A HOH 223 2 HOH HOH 523 A HOH 224 2 HOH HOH 524 A HOH 225 2 HOH HOH 525 A HOH 226 2 HOH HOH 526 A HOH 227 2 HOH HOH 527 A HOH 228 2 HOH HOH 528 A HOH 229 2 HOH HOH 529 A HOH 230 2 HOH HOH 530 A HOH 231 2 HOH HOH 531 A HOH 232 2 HOH HOH 532 A HOH 233 2 HOH HOH 533 A HOH 234 2 HOH HOH 534 A HOH 235 2 HOH HOH 535 A HOH 236 2 HOH HOH 536 A HOH 237 2 HOH HOH 537 A HOH 238 2 HOH HOH 538 A HOH 239 2 HOH HOH 539 A HOH 240 2 HOH HOH 540 A HOH 241 2 HOH HOH 541 A HOH 242 2 HOH HOH 542 A HOH 243 2 HOH HOH 543 A HOH 244 2 HOH HOH 544 A HOH 245 2 HOH HOH 545 A HOH 246 2 HOH HOH 546 A HOH 247 2 HOH HOH 547 A HOH 248 2 HOH HOH 548 A HOH 249 2 HOH HOH 549 A HOH 250 2 HOH HOH 550 A HOH 251 2 HOH HOH 551 A HOH 252 2 HOH HOH 552 A HOH 253 2 HOH HOH 553 A HOH 254 2 HOH HOH 554 A HOH 255 2 HOH HOH 555 A HOH 256 2 HOH HOH 556 A HOH 257 2 HOH HOH 557 A HOH 258 2 HOH HOH 558 A HOH 259 2 HOH HOH 559 A HOH 260 2 HOH HOH 560 A HOH 261 2 HOH HOH 561 A HOH 262 2 HOH HOH 562 A HOH 263 2 HOH HOH 563 A HOH 264 2 HOH HOH 564 A HOH 265 2 HOH HOH 565 A HOH 266 2 HOH HOH 566 A HOH 267 2 HOH HOH 567 A HOH 268 2 HOH HOH 568 A HOH 269 2 HOH HOH 569 A HOH 270 2 HOH HOH 570 A HOH 271 2 HOH HOH 571 A HOH 272 2 HOH HOH 572 A HOH 273 2 HOH HOH 573 A HOH 274 2 HOH HOH 574 A HOH 275 2 HOH HOH 575 A HOH 276 2 HOH HOH 576 A HOH 277 2 HOH HOH 577 A HOH 278 2 HOH HOH 578 A HOH 279 2 HOH HOH 579 A HOH 280 2 HOH HOH 580 A HOH 281 2 HOH HOH 581 A HOH 282 2 HOH HOH 582 A HOH 283 2 HOH HOH 583 A HOH 285 2 HOH HOH 584 A HOH 286 2 HOH HOH 585 A HOH 287 2 HOH HOH 586 A HOH 288 2 HOH HOH 587 A HOH 289 2 HOH HOH 588 A HOH 290 2 HOH HOH 589 A HOH 291 2 HOH HOH 590 A HOH 293 2 HOH HOH 591 A HOH 294 2 HOH HOH 592 A HOH 295 2 HOH HOH 593 A HOH 296 2 HOH HOH 594 A HOH 297 2 HOH HOH 595 A HOH 298 2 HOH HOH 596 A HOH 299 2 HOH HOH 597 A HOH 300 2 HOH HOH 598 A HOH 301 2 HOH HOH 599 A n 1 32 A n 2 33 A n 3 34 A PRO 3 n 4 PRO 35 A ILE 4 n 5 ILE 36 A PRO 5 n 6 PRO 37 A GLY 6 n 7 GLY 38 A VAL 7 n 8 VAL 39 A ALA 8 n 9 ALA 40 A SER 9 n 10 SER 41 A VAL 10 n 11 VAL 42 A SER 11 n 12 SER 43 A PRO 12 n 13 PRO 44 A ALA 13 n 14 ALA 45 A ASN 14 n 15 ASN 46 A GLY 15 n 16 GLY 47 A ALA 16 n 17 ALA 48 A VAL 17 n 18 VAL 49 A VAL 18 n 19 VAL 50 A GLY 19 n 20 GLY 51 A VAL 20 n 21 VAL 52 A ALA 21 n 22 ALA 53 A HIS 22 n 23 HIS 54 A PRO 23 n 24 PRO 55 A VAL 24 n 25 VAL 56 A VAL 25 n 26 VAL 57 A VAL 26 n 27 VAL 58 A THR 27 n 28 THR 59 A PHE 28 n 29 PHE 60 A THR 29 n 30 THR 61 A THR 30 n 31 THR 62 A PRO 31 n 32 PRO 63 A VAL 32 n 33 VAL 64 A THR 33 n 34 THR 65 A ASP 34 n 35 ASP 66 A ARG 35 n 36 ARG 67 A ARG 36 n 37 ARG 68 A ALA 37 n 38 ALA 69 A VAL 38 n 39 VAL 70 A GLU 39 n 40 GLU 71 A ARG 40 n 41 ARG 72 A SER 41 n 42 SER 73 A ILE 42 n 43 ILE 74 A ARG 43 n 44 ARG 75 A ILE 44 n 45 ILE 76 A SER 45 n 46 SER 77 A THR 46 n 47 THR 78 A PRO 47 n 48 PRO 79 A HIS 48 n 49 HIS 80 A ASN 49 n 50 ASN 81 A THR 50 n 51 THR 82 A THR 51 n 52 THR 83 A GLY 52 n 53 GLY 84 A HIS 53 n 54 HIS 85 A PHE 54 n 55 PHE 86 A GLU 55 n 56 GLU 87 A TRP 56 n 57 TRP 88 A VAL 57 n 58 VAL 89 A ALA 58 n 59 ALA 90 A SER 59 n 60 SER 91 A ASN 60 n 61 ASN 92 A VAL 61 n 62 VAL 93 A VAL 62 n 63 VAL 94 A ARG 63 n 64 ARG 95 A TRP 64 n 65 TRP 96 A VAL 65 n 66 VAL 97 A PRO 66 n 67 PRO 98 A HIS 67 n 68 HIS 99 A ARG 68 n 69 ARG 100 A TYR 69 n 70 TYR 101 A TRP 70 n 71 TRP 102 A PRO 71 n 72 PRO 103 A PRO 72 n 73 PRO 104 A HIS 73 n 74 HIS 105 A THR 74 n 75 THR 106 A ARG 75 n 76 ARG 107 A VAL 76 n 77 VAL 108 A SER 77 n 78 SER 109 A VAL 78 n 79 VAL 110 A GLY 79 n 80 GLY 111 A VAL 80 n 81 VAL 112 A GLN 81 n 82 GLN 113 A GLU 82 n 83 GLU 114 A LEU 83 n 84 LEU 115 A THR 84 n 85 THR 116 A GLU 85 n 86 GLU 117 A GLY 86 n 87 GLY 118 A PHE 87 n 88 PHE 119 A GLU 88 n 89 GLU 120 A THR 89 n 90 THR 121 A GLY 90 n 91 GLY 122 A ASP 91 n 92 ASP 123 A ALA 92 n 93 ALA 124 A LEU 93 n 94 LEU 125 A ILE 94 n 95 ILE 126 A GLY 95 n 96 GLY 127 A VAL 96 n 97 VAL 128 A ALA 97 n 98 ALA 129 A SER 98 n 99 SER 130 A ILE 99 n 100 ILE 131 A SER 100 n 101 SER 132 A ALA 101 n 102 ALA 133 A HIS 102 n 103 HIS 134 A THR 103 n 104 THR 135 A PHE 104 n 105 PHE 136 A THR 105 n 106 THR 137 A VAL 106 n 107 VAL 138 A SER 107 n 108 SER 139 A ARG 108 n 109 ARG 140 A ASN 109 n 110 ASN 141 A GLY 110 n 111 GLY 142 A GLU 111 n 112 GLU 143 A VAL 112 n 113 VAL 144 A LEU 113 n 114 LEU 145 A ARG 114 n 115 ARG 146 A THR 115 n 116 THR 147 A MET 116 n 117 MET 148 A PRO 117 n 118 PRO 149 A ALA 118 n 119 ALA 150 A SER 119 n 120 SER 151 A LEU 120 n 121 LEU 152 A GLY 121 n 122 GLY 153 A LYS 122 n 123 LYS 154 A PRO 123 n 124 PRO 155 A SER 124 n 125 SER 156 A ARG 125 n 126 ARG 157 A PRO 126 n 127 PRO 158 A THR 127 n 128 THR 159 A PRO 128 n 129 PRO 160 A ILE 129 n 130 ILE 161 A GLY 130 n 131 GLY 162 A SER 131 n 132 SER 163 A PHE 132 n 133 PHE 164 A HIS 133 n 134 HIS 165 A ALA 134 n 135 ALA 166 A MET 135 n 136 MET 167 A SER 136 n 137 SER 168 A LYS 137 n 138 LYS 169 A GLU 138 n 139 GLU 170 A ARG 139 n 140 ARG 171 A THR 140 n 141 THR 172 A VAL 141 n 142 VAL 173 A VAL 142 n 143 VAL 174 A MET 143 n 144 MET 175 A ASP 144 n 145 ASP 176 A SER 145 n 146 SER 177 A ARG 146 n 147 ARG 178 A THR 147 n 148 THR 179 A ILE 148 n 149 ILE 180 A GLY 149 n 150 GLY 181 A ILE 150 n 151 ILE 182 A PRO 151 n 152 PRO 183 A LEU 152 n 153 LEU 184 A ASN 153 n 154 ASN 185 A SER 154 n 155 SER 186 A SER 155 n 156 SER 187 A ASP 156 n 157 ASP 188 A GLY 157 n 158 GLY 189 A TYR 158 n 159 TYR 190 A LEU 159 n 160 LEU 191 A LEU 160 n 161 LEU 192 A THR 161 n 162 THR 193 A ALA 162 n 163 ALA 194 A HIS 163 n 164 HIS 195 A TYR 164 n 165 TYR 196 A ALA 165 n 166 ALA 197 A VAL 166 n 167 VAL 198 A ARG 167 n 168 ARG 199 A VAL 168 n 169 VAL 200 A THR 169 n 170 THR 201 A TRP 170 n 171 TRP 202 A SER 171 n 172 SER 203 A GLY 172 n 173 GLY 204 A VAL 173 n 174 VAL 205 A TYR 174 n 175 TYR 206 A VAL 175 n 176 VAL 207 A HIS 176 n 177 HIS 208 A SER 177 n 178 SER 209 A ALA 178 n 179 ALA 210 A PRO 179 n 180 PRO 211 A TRP 180 n 181 TRP 212 A SER 181 n 182 SER 213 A VAL 182 n 183 VAL 214 A ASN 183 n 184 ASN 215 A SER 184 n 185 SER 216 A GLN 185 n 186 GLN 217 A GLY 186 n 187 GLY 218 A TYR 187 n 188 TYR 219 A ALA 188 n 189 ALA 220 A ASN 189 n 190 ASN 221 A VAL 190 n 191 VAL 222 A SER 191 n 192 SER 223 A HIS 192 n 193 HIS 224 A GLY 193 n 194 GLY 225 A CYS 194 n 195 CYS 226 A ILE 195 n 196 ILE 227 A ASN 196 n 197 ASN 228 A LEU 197 n 198 LEU 229 A SER 198 n 199 SER 230 A PRO 199 n 200 PRO 231 A ASP 200 n 201 ASP 232 A ASN 201 n 202 ASN 233 A ALA 202 n 203 ALA 234 A ALA 203 n 204 ALA 235 A TRP 204 n 205 TRP 236 A TYR 205 n 206 TYR 237 A PHE 206 n 207 PHE 238 A ASP 207 n 208 ASP 239 A ALA 208 n 209 ALA 240 A VAL 209 n 210 VAL 241 A THR 210 n 211 THR 242 A VAL 211 n 212 VAL 243 A GLY 212 n 213 GLY 244 A ASP 213 n 214 ASP 245 A PRO 214 n 215 PRO 246 A ILE 215 n 216 ILE 247 A GLU 216 n 217 GLU 248 A VAL 217 n 218 VAL 249 A VAL 218 n 219 VAL 250 A n 220 251 A author_and_software_defined_assembly PISA 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N ALA 40 A N ALA 9 A O THR 59 A O THR 28 A N VAL 58 A N VAL 27 A O VAL 94 A O VAL 63 A O VAL 97 A O VAL 66 A N HIS 85 A N HIS 54 A N VAL 50 A N VAL 19 A O GLU 120 A O GLU 89 A O PHE 119 A O PHE 88 A N VAL 108 A N VAL 77 A O SER 109 A O SER 78 A N SER 77 A N SER 46 A O LEU 145 A O LEU 114 A N VAL 138 A N VAL 107 A O THR 135 A O THR 104 A N SER 130 A N SER 99 A N ALA 129 A N ALA 98 A O GLU 248 A O GLU 217 A O ILE 247 A O ILE 216 A N PHE 164 A N PHE 133 A N MET 175 A N MET 144 A O LEU 192 A O LEU 161 A N VAL 198 A N VAL 167 A O VAL 207 A O VAL 176 A N TYR 206 A N TYR 175 A O ILE 227 A O ILE 196 1 A PRO 32 A PRO 1 1 Y 1 A LEU 33 A LEU 2 1 Y 1 A GLN 34 A GLN 3 1 Y 1 A GLY 251 A GLY 220 1 Y 1 A TYR 101 74.48 152.48 1 A GLN 113 52.76 -125.86 23.128 0.04 0.00 0.00 0.04 0.00 -0.09 0.951 0.918 0.21286 0.16356 0.16675 2.20 15.00 974 13536 13536 6.7 99.99 4.202 0.109 RANDOM 1 THROUGHOUT MAD 0.214 0.182 0.80 0.80 1.40 MAXIMUM LIKELIHOOD BABINET MODEL WITH MASK 2.20 15.00 299 1940 0 0 1641 0.009 0.021 1691 0.001 0.020 1096 1.185 1.916 2325 0.818 3.000 2659 6.405 5.000 215 24.938 21.940 67 11.335 15.000 230 12.703 15.000 13 0.065 0.200 268 0.005 0.021 1900 0.001 0.020 355 0.519 1.500 1079 0.097 1.500 434 1.007 2.000 1767 1.627 3.000 612 2.762 4.500 558 0.220 0.177 2.257 75 971 20 99.81 2.2 50.0 4JMN 14669 14669 1 100 2.2 2.24 1 100 data collection HKL-2000 phasing SOLVE refinement REFMAC 5.5.0110 data reduction HKL-2000 data scaling HKL-2000 Crystal structure of LD transpeptidase LdtMt1 from M. tuberculosis 1 N N 2 N N A ASP 66 A ASP 35 HELX_P A SER 73 A SER 42 1 1 8 A ARG 178 A ARG 147 HELX_P A GLY 181 A GLY 150 5 2 4 A PRO 211 A PRO 180 HELX_P A VAL 214 A VAL 183 5 3 4 A SER 230 A SER 199 HELX_P A VAL 241 A VAL 210 1 4 12 TRANSFERASE IG-like domain and beta barrel, cell wall modelling, TRANSFERASE A SER 43 A SER 12 1 A PRO 44 A PRO 13 1.10 L0T5Q5_MYCTU UNP 1 32 L0T5Q5 PLQPIPGVASVSPANGAVVGVAHPVVVTFTTPVTDRRAVERSIRISTPHNTTGHFEWVASNVVRWVPHRYWPPHTRVSVG VQELTEGFETGDALIGVASISAHTFTVSRNGEVLRTMPASLGKPSRPTPIGSFHAMSKERTVVMDSRTIGIPLNSSDGYL LTAHYAVRVTWSGVYVHSAPWSVNSQGYANVSHGCINLSPDNAAWYFDAVTVGDPIEVVG 32 251 4JMN 32 251 L0T5Q5 A 1 1 220 4 4 5 4 anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel parallel A VAL 39 A VAL 8 A SER 43 A SER 12 A VAL 56 A VAL 25 A PHE 60 A PHE 29 A VAL 93 A VAL 62 A PRO 98 A PRO 67 A GLY 84 A GLY 53 A ALA 90 A ALA 59 A VAL 49 A VAL 18 A VAL 50 A VAL 19 A LEU 115 A LEU 84 A THR 121 A THR 90 A ARG 107 A ARG 76 A VAL 112 A VAL 81 A ILE 74 A ILE 43 A SER 77 A SER 46 A GLU 143 A GLU 112 A PRO 149 A PRO 118 A THR 135 A THR 104 A ARG 140 A ARG 109 A LEU 125 A LEU 94 A SER 130 A SER 99 A PRO 246 A PRO 215 A VAL 250 A VAL 219 A GLY 162 A GLY 131 A HIS 165 A HIS 134 A SER 168 A SER 137 A ASP 176 A ASP 145 A LEU 191 A LEU 160 A ARG 199 A ARG 168 A TYR 206 A TYR 175 A SER 209 A SER 178 A ILE 227 A ILE 196 A LEU 229 A LEU 198 96 P 43 21 2