0.028230 0.000000 0.001818 0.000000 0.010556 0.000000 0.000000 0.000000 0.016252 0.000000 0.000000 0.000000 Taylor, I.A. Goldstone, D.C. Flower, T.G. Ball, N.J. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.000 93.680 90.000 35.423 94.729 61.659 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C5 H11 N O2 Se 196.106 n SELENOMETHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US Plos Pathog. 1553-7366 9 e1003376 e1003376 10.1371/journal.ppat.1003376 23675305 A Unique Spumavirus Gag N-terminal Domain with Functional Properties of Orthoretroviral Matrix and Capsid. 2013 100 1 PIXEL 2011-02-25 PSI PILATUS 6M Double crystal SINGLE WAVELENGTH M x-ray 1 0.9791 1.0 I03 Diamond 0.9791 SYNCHROTRON DIAMOND BEAMLINE I03 23242.953 Gag polyprotein 2 man polymer 18.015 water 171 nat water Pr71Gag, Gag protein, p68Gag, p3, p3Gag no yes (MSE)AHHHHHHSAALEVLFQGPG(MSE)ASGSNVEEYELDVEALVVILRDRNIPRNPLHGEVIGLRLTEGWWGQIERFQ (MSE)VRLILQNDDNEPLQRPRYEVIQRAVNPHT(MSE)F(MSE)ISGPLAELQLAFQDLDLPEGPLRFGPLANGHYVQG DPYSSSYRPVT(MSE)AETAQ(MSE)TRDELEDVLNTQSEIEIQ(MSE)INLLELYEVETRALRRQLAERS MAHHHHHHSAALEVLFQGPGMASGSNVEEYELDVEALVVILRDRNIPRNPLHGEVIGLRLTEGWWGQIERFQMVRLILQN DDNEPLQRPRYEVIQRAVNPHTMFMISGPLAELQLAFQDLDLPEGPLRFGPLANGHYVQGDPYSSSYRPVTMAETAQMTR DELEDVLNTQSEIEIQMINLLELYEVETRALRRQLAERS A,B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n SFVcpz(hu) sample gag 11963 Human spumaretrovirus 562 Escherichia coli Rosetta 2 (DE3) pET47b 1 2.23 44.84 VAPOR DIFFUSION 8 10mg/ml solution of PFV-Gag-NtD in 150mM NaCl, 5% glycerol, 10mM Tris-HCl, pH 8.0 was mixed with an equal volume of crystallisation solution containing 16% PEG 6000 (w/v), 12% ethylene glycol, 0.03M MgCl2 hexahydrate , VAPOR DIFFUSION, temperature 289K 289 repository Initial release 1 0 2013-05-29 HPFV Gag bound to Env leader peptide RCSB Y RCSB 2013-03-15 REL REL HOH water HOH 6 2 HOH HOH 201 A HOH 7 2 HOH HOH 202 A HOH 8 2 HOH HOH 203 A HOH 10 2 HOH HOH 204 A HOH 11 2 HOH HOH 205 A HOH 15 2 HOH HOH 206 A HOH 16 2 HOH HOH 207 A HOH 17 2 HOH HOH 208 A HOH 22 2 HOH HOH 209 A HOH 27 2 HOH HOH 210 A HOH 28 2 HOH HOH 211 A HOH 30 2 HOH HOH 212 A HOH 31 2 HOH HOH 213 A HOH 35 2 HOH HOH 214 A HOH 36 2 HOH HOH 215 A HOH 38 2 HOH HOH 216 A HOH 39 2 HOH HOH 217 A HOH 41 2 HOH HOH 218 A HOH 43 2 HOH HOH 219 A HOH 44 2 HOH HOH 220 A HOH 45 2 HOH HOH 221 A HOH 50 2 HOH HOH 222 A HOH 51 2 HOH HOH 223 A HOH 52 2 HOH HOH 224 A HOH 53 2 HOH HOH 225 A HOH 58 2 HOH HOH 226 A HOH 61 2 HOH HOH 227 A HOH 62 2 HOH HOH 228 A HOH 64 2 HOH HOH 229 A HOH 66 2 HOH HOH 230 A HOH 69 2 HOH HOH 231 A HOH 71 2 HOH HOH 232 A HOH 72 2 HOH HOH 233 A HOH 74 2 HOH HOH 234 A HOH 75 2 HOH HOH 235 A HOH 76 2 HOH HOH 236 A HOH 77 2 HOH HOH 237 A HOH 78 2 HOH HOH 238 A HOH 79 2 HOH HOH 239 A HOH 80 2 HOH HOH 240 A HOH 85 2 HOH HOH 241 A HOH 86 2 HOH HOH 242 A HOH 87 2 HOH HOH 243 A HOH 88 2 HOH HOH 244 A HOH 89 2 HOH HOH 245 A HOH 92 2 HOH HOH 246 A HOH 93 2 HOH HOH 247 A HOH 94 2 HOH HOH 248 A HOH 96 2 HOH HOH 249 A HOH 97 2 HOH HOH 250 A HOH 100 2 HOH HOH 251 A HOH 108 2 HOH HOH 252 A HOH 109 2 HOH HOH 253 A HOH 111 2 HOH HOH 254 A HOH 112 2 HOH HOH 255 A HOH 113 2 HOH HOH 256 A HOH 116 2 HOH HOH 257 A HOH 117 2 HOH HOH 258 A HOH 118 2 HOH HOH 259 A HOH 120 2 HOH HOH 260 A HOH 123 2 HOH HOH 261 A HOH 129 2 HOH HOH 262 A HOH 130 2 HOH HOH 263 A HOH 132 2 HOH HOH 264 A HOH 133 2 HOH HOH 265 A HOH 134 2 HOH HOH 266 A HOH 136 2 HOH HOH 267 A HOH 137 2 HOH HOH 268 A HOH 139 2 HOH HOH 269 A HOH 142 2 HOH HOH 270 A HOH 143 2 HOH HOH 271 A HOH 149 2 HOH HOH 272 A HOH 152 2 HOH HOH 273 A HOH 161 2 HOH HOH 274 A HOH 163 2 HOH HOH 275 A HOH 165 2 HOH HOH 276 A HOH 167 2 HOH HOH 277 A HOH 168 2 HOH HOH 278 A HOH 170 2 HOH HOH 279 A HOH 173 2 HOH HOH 280 A HOH 174 2 HOH HOH 281 A HOH 177 2 HOH HOH 282 A HOH 180 2 HOH HOH 283 A HOH 181 2 HOH HOH 284 A HOH 185 2 HOH HOH 285 A HOH 188 2 HOH HOH 286 A HOH 189 2 HOH HOH 287 A HOH 190 2 HOH HOH 288 A HOH 192 2 HOH HOH 289 A HOH 1 2 HOH HOH 201 B HOH 2 2 HOH HOH 202 B HOH 3 2 HOH HOH 203 B HOH 4 2 HOH HOH 204 B HOH 5 2 HOH HOH 205 B HOH 9 2 HOH HOH 206 B HOH 12 2 HOH HOH 207 B HOH 13 2 HOH HOH 208 B HOH 14 2 HOH HOH 209 B HOH 18 2 HOH HOH 210 B HOH 19 2 HOH HOH 211 B HOH 20 2 HOH HOH 212 B HOH 21 2 HOH HOH 213 B HOH 23 2 HOH HOH 214 B HOH 24 2 HOH HOH 215 B HOH 25 2 HOH HOH 216 B HOH 26 2 HOH HOH 217 B HOH 29 2 HOH HOH 218 B HOH 32 2 HOH HOH 219 B HOH 33 2 HOH HOH 220 B HOH 34 2 HOH HOH 221 B HOH 37 2 HOH HOH 222 B HOH 40 2 HOH HOH 223 B HOH 42 2 HOH HOH 224 B HOH 46 2 HOH HOH 225 B HOH 47 2 HOH HOH 226 B HOH 48 2 HOH HOH 227 B HOH 49 2 HOH HOH 228 B HOH 54 2 HOH HOH 229 B HOH 55 2 HOH HOH 230 B HOH 57 2 HOH HOH 231 B HOH 59 2 HOH HOH 232 B HOH 60 2 HOH HOH 233 B HOH 63 2 HOH HOH 234 B HOH 65 2 HOH HOH 235 B HOH 67 2 HOH HOH 236 B HOH 68 2 HOH HOH 237 B HOH 70 2 HOH HOH 238 B HOH 73 2 HOH HOH 239 B HOH 81 2 HOH HOH 240 B HOH 83 2 HOH HOH 241 B HOH 84 2 HOH HOH 242 B HOH 90 2 HOH HOH 243 B HOH 91 2 HOH HOH 244 B HOH 95 2 HOH HOH 245 B HOH 98 2 HOH HOH 246 B HOH 99 2 HOH HOH 247 B HOH 101 2 HOH HOH 248 B HOH 102 2 HOH HOH 249 B HOH 103 2 HOH HOH 250 B HOH 104 2 HOH HOH 251 B HOH 105 2 HOH HOH 252 B HOH 106 2 HOH HOH 253 B HOH 107 2 HOH HOH 254 B HOH 114 2 HOH HOH 255 B HOH 119 2 HOH HOH 256 B HOH 124 2 HOH HOH 257 B HOH 125 2 HOH HOH 258 B HOH 126 2 HOH HOH 259 B HOH 127 2 HOH HOH 260 B HOH 128 2 HOH HOH 261 B HOH 131 2 HOH HOH 262 B HOH 135 2 HOH HOH 263 B HOH 140 2 HOH HOH 264 B HOH 144 2 HOH HOH 265 B HOH 148 2 HOH HOH 266 B HOH 155 2 HOH HOH 267 B HOH 156 2 HOH HOH 268 B HOH 158 2 HOH HOH 269 B HOH 159 2 HOH HOH 270 B HOH 162 2 HOH HOH 271 B HOH 164 2 HOH HOH 272 B HOH 166 2 HOH HOH 273 B HOH 169 2 HOH HOH 274 B HOH 171 2 HOH HOH 275 B HOH 172 2 HOH HOH 276 B HOH 178 2 HOH HOH 277 B HOH 179 2 HOH HOH 278 B HOH 182 2 HOH HOH 279 B HOH 183 2 HOH HOH 280 B HOH 184 2 HOH HOH 281 B HOH 186 2 HOH HOH 282 B n 1 -19 A n 2 -18 A n 3 -17 A n 4 -16 A n 5 -15 A n 6 -14 A n 7 -13 A n 8 -12 A n 9 -11 A n 10 -10 A n 11 -9 A n 12 -8 A n 13 -7 A n 14 -6 A n 15 -5 A n 16 -4 A n 17 -3 A n 18 -2 A n 19 -1 A n 20 0 A n 21 1 A n 22 2 A n 23 3 A n 24 4 A n 25 5 A n 26 6 A n 27 7 A n 28 8 A GLU 9 n 29 GLU 9 A TYR 10 n 30 TYR 10 A GLU 11 n 31 GLU 11 A LEU 12 n 32 LEU 12 A ASP 13 n 33 ASP 13 A VAL 14 n 34 VAL 14 A GLU 15 n 35 GLU 15 A ALA 16 n 36 ALA 16 A LEU 17 n 37 LEU 17 A VAL 18 n 38 VAL 18 A VAL 19 n 39 VAL 19 A ILE 20 n 40 ILE 20 A LEU 21 n 41 LEU 21 A ARG 22 n 42 ARG 22 A ASP 23 n 43 ASP 23 A ARG 24 n 44 ARG 24 A ASN 25 n 45 ASN 25 A ILE 26 n 46 ILE 26 A PRO 27 n 47 PRO 27 A ARG 28 n 48 ARG 28 A ASN 29 n 49 ASN 29 A PRO 30 n 50 PRO 30 A LEU 31 n 51 LEU 31 A HIS 32 n 52 HIS 32 A GLY 33 n 53 GLY 33 A GLU 34 n 54 GLU 34 A VAL 35 n 55 VAL 35 A ILE 36 n 56 ILE 36 A GLY 37 n 57 GLY 37 A LEU 38 n 58 LEU 38 A ARG 39 n 59 ARG 39 A LEU 40 n 60 LEU 40 A THR 41 n 61 THR 41 A GLU 42 n 62 GLU 42 A GLY 43 n 63 GLY 43 A TRP 44 n 64 TRP 44 A TRP 45 n 65 TRP 45 A GLY 46 n 66 GLY 46 A GLN 47 n 67 GLN 47 A ILE 48 n 68 ILE 48 A GLU 49 n 69 GLU 49 A ARG 50 n 70 ARG 50 A PHE 51 n 71 PHE 51 A GLN 52 n 72 GLN 52 A MSE 53 n 73 MSE 53 A VAL 54 n 74 VAL 54 A ARG 55 n 75 ARG 55 A LEU 56 n 76 LEU 56 A ILE 57 n 77 ILE 57 A LEU 58 n 78 LEU 58 A GLN 59 n 79 GLN 59 A ASN 60 n 80 ASN 60 A ASP 61 n 81 ASP 61 A ASP 62 n 82 ASP 62 A ASN 63 n 83 ASN 63 A GLU 64 n 84 GLU 64 A PRO 65 n 85 PRO 65 A LEU 66 n 86 LEU 66 A GLN 67 n 87 GLN 67 A ARG 68 n 88 ARG 68 A PRO 69 n 89 PRO 69 A ARG 70 n 90 ARG 70 A TYR 71 n 91 TYR 71 A GLU 72 n 92 GLU 72 A VAL 73 n 93 VAL 73 A ILE 74 n 94 ILE 74 A GLN 75 n 95 GLN 75 A ARG 76 n 96 ARG 76 A ALA 77 n 97 ALA 77 A VAL 78 n 98 VAL 78 A ASN 79 n 99 ASN 79 A PRO 80 n 100 PRO 80 A HIS 81 n 101 HIS 81 A THR 82 n 102 THR 82 A MSE 83 n 103 MSE 83 A PHE 84 n 104 PHE 84 A MSE 85 n 105 MSE 85 A ILE 86 n 106 ILE 86 A SER 87 n 107 SER 87 A GLY 88 n 108 GLY 88 A PRO 89 n 109 PRO 89 A LEU 90 n 110 LEU 90 A ALA 91 n 111 ALA 91 A GLU 92 n 112 GLU 92 A LEU 93 n 113 LEU 93 A GLN 94 n 114 GLN 94 A LEU 95 n 115 LEU 95 A ALA 96 n 116 ALA 96 A PHE 97 n 117 PHE 97 A GLN 98 n 118 GLN 98 A ASP 99 n 119 ASP 99 A LEU 100 n 120 LEU 100 A ASP 101 n 121 ASP 101 A LEU 102 n 122 LEU 102 A PRO 103 n 123 PRO 103 A GLU 104 n 124 GLU 104 A GLY 105 n 125 GLY 105 A PRO 106 n 126 PRO 106 A LEU 107 n 127 LEU 107 A ARG 108 n 128 ARG 108 A PHE 109 n 129 PHE 109 A GLY 110 n 130 GLY 110 A PRO 111 n 131 PRO 111 A LEU 112 n 132 LEU 112 A ALA 113 n 133 ALA 113 A ASN 114 n 134 ASN 114 A GLY 115 n 135 GLY 115 A HIS 116 n 136 HIS 116 A TYR 117 n 137 TYR 117 A VAL 118 n 138 VAL 118 A GLN 119 n 139 GLN 119 A GLY 120 n 140 GLY 120 A ASP 121 n 141 ASP 121 A PRO 122 n 142 PRO 122 A TYR 123 n 143 TYR 123 A SER 124 n 144 SER 124 A SER 125 n 145 SER 125 A SER 126 n 146 SER 126 A TYR 127 n 147 TYR 127 A ARG 128 n 148 ARG 128 A PRO 129 n 149 PRO 129 A VAL 130 n 150 VAL 130 A THR 131 n 151 THR 131 A MSE 132 n 152 MSE 132 A ALA 133 n 153 ALA 133 A GLU 134 n 154 GLU 134 A THR 135 n 155 THR 135 A ALA 136 n 156 ALA 136 A GLN 137 n 157 GLN 137 A MSE 138 n 158 MSE 138 A THR 139 n 159 THR 139 A ARG 140 n 160 ARG 140 A ASP 141 n 161 ASP 141 A GLU 142 n 162 GLU 142 A LEU 143 n 163 LEU 143 A GLU 144 n 164 GLU 144 A ASP 145 n 165 ASP 145 A VAL 146 n 166 VAL 146 A LEU 147 n 167 LEU 147 A ASN 148 n 168 ASN 148 A THR 149 n 169 THR 149 A GLN 150 n 170 GLN 150 A SER 151 n 171 SER 151 A GLU 152 n 172 GLU 152 A ILE 153 n 173 ILE 153 A GLU 154 n 174 GLU 154 A ILE 155 n 175 ILE 155 A GLN 156 n 176 GLN 156 A MSE 157 n 177 MSE 157 A ILE 158 n 178 ILE 158 A ASN 159 n 179 ASN 159 A LEU 160 n 180 LEU 160 A LEU 161 n 181 LEU 161 A GLU 162 n 182 GLU 162 A LEU 163 n 183 LEU 163 A TYR 164 n 184 TYR 164 A GLU 165 n 185 GLU 165 A VAL 166 n 186 VAL 166 A GLU 167 n 187 GLU 167 A THR 168 n 188 THR 168 A ARG 169 n 189 ARG 169 A ALA 170 n 190 ALA 170 A LEU 171 n 191 LEU 171 A ARG 172 n 192 ARG 172 A ARG 173 n 193 ARG 173 A GLN 174 n 194 GLN 174 A LEU 175 n 195 LEU 175 A ALA 176 n 196 ALA 176 A GLU 177 n 197 GLU 177 A ARG 178 n 198 ARG 178 A SER 179 n 199 SER 179 A n 1 -19 B n 2 -18 B n 3 -17 B n 4 -16 B n 5 -15 B n 6 -14 B n 7 -13 B n 8 -12 B n 9 -11 B n 10 -10 B n 11 -9 B n 12 -8 B n 13 -7 B n 14 -6 B n 15 -5 B n 16 -4 B n 17 -3 B n 18 -2 B n 19 -1 B n 20 0 B n 21 1 B n 22 2 B n 23 3 B n 24 4 B n 25 5 B n 26 6 B VAL 7 n 27 VAL 7 B GLU 8 n 28 GLU 8 B GLU 9 n 29 GLU 9 B TYR 10 n 30 TYR 10 B GLU 11 n 31 GLU 11 B LEU 12 n 32 LEU 12 B ASP 13 n 33 ASP 13 B VAL 14 n 34 VAL 14 B GLU 15 n 35 GLU 15 B ALA 16 n 36 ALA 16 B LEU 17 n 37 LEU 17 B VAL 18 n 38 VAL 18 B VAL 19 n 39 VAL 19 B ILE 20 n 40 ILE 20 B LEU 21 n 41 LEU 21 B ARG 22 n 42 ARG 22 B ASP 23 n 43 ASP 23 B ARG 24 n 44 ARG 24 B ASN 25 n 45 ASN 25 B ILE 26 n 46 ILE 26 B PRO 27 n 47 PRO 27 B ARG 28 n 48 ARG 28 B ASN 29 n 49 ASN 29 B PRO 30 n 50 PRO 30 B LEU 31 n 51 LEU 31 B HIS 32 n 52 HIS 32 B GLY 33 n 53 GLY 33 B GLU 34 n 54 GLU 34 B VAL 35 n 55 VAL 35 B ILE 36 n 56 ILE 36 B GLY 37 n 57 GLY 37 B LEU 38 n 58 LEU 38 B ARG 39 n 59 ARG 39 B LEU 40 n 60 LEU 40 B THR 41 n 61 THR 41 B GLU 42 n 62 GLU 42 B GLY 43 n 63 GLY 43 B TRP 44 n 64 TRP 44 B TRP 45 n 65 TRP 45 B GLY 46 n 66 GLY 46 B GLN 47 n 67 GLN 47 B ILE 48 n 68 ILE 48 B GLU 49 n 69 GLU 49 B ARG 50 n 70 ARG 50 B PHE 51 n 71 PHE 51 B GLN 52 n 72 GLN 52 B MSE 53 n 73 MSE 53 B VAL 54 n 74 VAL 54 B ARG 55 n 75 ARG 55 B LEU 56 n 76 LEU 56 B ILE 57 n 77 ILE 57 B LEU 58 n 78 LEU 58 B GLN 59 n 79 GLN 59 B ASN 60 n 80 ASN 60 B ASP 61 n 81 ASP 61 B ASP 62 n 82 ASP 62 B ASN 63 n 83 ASN 63 B GLU 64 n 84 GLU 64 B PRO 65 n 85 PRO 65 B LEU 66 n 86 LEU 66 B GLN 67 n 87 GLN 67 B ARG 68 n 88 ARG 68 B PRO 69 n 89 PRO 69 B ARG 70 n 90 ARG 70 B TYR 71 n 91 TYR 71 B GLU 72 n 92 GLU 72 B VAL 73 n 93 VAL 73 B ILE 74 n 94 ILE 74 B GLN 75 n 95 GLN 75 B ARG 76 n 96 ARG 76 B ALA 77 n 97 ALA 77 B VAL 78 n 98 VAL 78 B ASN 79 n 99 ASN 79 B PRO 80 n 100 PRO 80 B HIS 81 n 101 HIS 81 B THR 82 n 102 THR 82 B MSE 83 n 103 MSE 83 B PHE 84 n 104 PHE 84 B MSE 85 n 105 MSE 85 B ILE 86 n 106 ILE 86 B SER 87 n 107 SER 87 B GLY 88 n 108 GLY 88 B PRO 89 n 109 PRO 89 B LEU 90 n 110 LEU 90 B ALA 91 n 111 ALA 91 B GLU 92 n 112 GLU 92 B LEU 93 n 113 LEU 93 B GLN 94 n 114 GLN 94 B LEU 95 n 115 LEU 95 B ALA 96 n 116 ALA 96 B PHE 97 n 117 PHE 97 B GLN 98 n 118 GLN 98 B ASP 99 n 119 ASP 99 B LEU 100 n 120 LEU 100 B ASP 101 n 121 ASP 101 B LEU 102 n 122 LEU 102 B PRO 103 n 123 PRO 103 B GLU 104 n 124 GLU 104 B GLY 105 n 125 GLY 105 B PRO 106 n 126 PRO 106 B LEU 107 n 127 LEU 107 B ARG 108 n 128 ARG 108 B PHE 109 n 129 PHE 109 B GLY 110 n 130 GLY 110 B PRO 111 n 131 PRO 111 B LEU 112 n 132 LEU 112 B ALA 113 n 133 ALA 113 B ASN 114 n 134 ASN 114 B GLY 115 n 135 GLY 115 B HIS 116 n 136 HIS 116 B TYR 117 n 137 TYR 117 B VAL 118 n 138 VAL 118 B GLN 119 n 139 GLN 119 B GLY 120 n 140 GLY 120 B ASP 121 n 141 ASP 121 B PRO 122 n 142 PRO 122 B TYR 123 n 143 TYR 123 B SER 124 n 144 SER 124 B SER 125 n 145 SER 125 B SER 126 n 146 SER 126 B TYR 127 n 147 TYR 127 B ARG 128 n 148 ARG 128 B PRO 129 n 149 PRO 129 B VAL 130 n 150 VAL 130 B THR 131 n 151 THR 131 B MSE 132 n 152 MSE 132 B ALA 133 n 153 ALA 133 B GLU 134 n 154 GLU 134 B THR 135 n 155 THR 135 B ALA 136 n 156 ALA 136 B GLN 137 n 157 GLN 137 B MSE 138 n 158 MSE 138 B THR 139 n 159 THR 139 B ARG 140 n 160 ARG 140 B ASP 141 n 161 ASP 141 B GLU 142 n 162 GLU 142 B LEU 143 n 163 LEU 143 B GLU 144 n 164 GLU 144 B ASP 145 n 165 ASP 145 B VAL 146 n 166 VAL 146 B LEU 147 n 167 LEU 147 B ASN 148 n 168 ASN 148 B THR 149 n 169 THR 149 B GLN 150 n 170 GLN 150 B SER 151 n 171 SER 151 B GLU 152 n 172 GLU 152 B ILE 153 n 173 ILE 153 B GLU 154 n 174 GLU 154 B ILE 155 n 175 ILE 155 B GLN 156 n 176 GLN 156 B MSE 157 n 177 MSE 157 B ILE 158 n 178 ILE 158 B ASN 159 n 179 ASN 159 B LEU 160 n 180 LEU 160 B LEU 161 n 181 LEU 161 B GLU 162 n 182 GLU 162 B LEU 163 n 183 LEU 163 B TYR 164 n 184 TYR 164 B GLU 165 n 185 GLU 165 B VAL 166 n 186 VAL 166 B GLU 167 n 187 GLU 167 B THR 168 n 188 THR 168 B ARG 169 n 189 ARG 169 B ALA 170 n 190 ALA 170 B LEU 171 n 191 LEU 171 B ARG 172 n 192 ARG 172 B ARG 173 n 193 ARG 173 B GLN 174 n 194 GLN 174 B LEU 175 n 195 LEU 175 B ALA 176 n 196 ALA 176 B GLU 177 n 197 GLU 177 B ARG 178 n 198 ARG 178 B SER 179 n 199 SER 179 B 0.0050 -0.0002 0.0056 0.0007 -0.0001 0.0084 -0.0069 -0.0140 -0.0692 -0.0122 0.0408 -0.0098 0.0158 -0.0475 0.0631 0.0992 -0.0449 0.0009 0.0726 0.0226 0.1121 refined -2.7425 20.2593 49.5964 X-RAY DIFFRACTION 0.1862 -0.0791 -0.1115 0.1937 0.0640 0.2768 -0.0207 0.1125 -0.0722 0.0547 -0.0751 0.0207 -0.0052 -0.1296 -0.2043 0.0314 -0.0071 -0.0050 0.0117 -0.0679 -0.0019 refined -0.2684 29.3513 45.2780 X-RAY DIFFRACTION 0.0668 -0.0540 -0.0085 0.0447 0.0037 0.0332 0.0293 -0.0165 -0.0505 0.0035 0.0276 0.0130 -0.0152 -0.0275 0.0146 0.0747 -0.0100 0.0507 0.0916 0.0624 0.2518 refined -3.9932 33.4566 56.0333 X-RAY DIFFRACTION 0.2760 0.0354 -0.0332 0.0830 -0.1054 0.1474 0.0080 -0.0307 -0.1740 -0.0439 -0.0429 -0.0101 0.0674 0.0598 -0.0606 0.0506 0.0016 0.0168 0.0182 -0.0002 0.0382 refined 12.4163 38.4578 50.6021 X-RAY DIFFRACTION 0.0599 0.0310 0.0011 0.0206 0.0002 0.0008 0.0357 -0.1115 -0.0083 0.0982 -0.0147 0.0498 0.0091 -0.0138 0.0547 0.1398 -0.0269 0.0635 0.1679 -0.0060 0.0071 refined 20.6581 51.3221 77.7772 X-RAY DIFFRACTION 0.0690 -0.0555 0.0357 0.0445 -0.0208 0.2173 0.0923 -0.0135 0.0153 0.0226 0.0274 0.0860 -0.0401 0.0133 0.0256 0.1349 -0.0481 -0.0125 0.0652 0.0265 0.2451 refined 42.7838 71.4700 47.8152 X-RAY DIFFRACTION 0.0236 -0.0074 0.0426 0.1054 -0.0065 0.0835 -0.0553 -0.0098 0.0551 0.0201 -0.0066 0.0490 -0.0213 0.0497 -0.1762 -0.0543 0.0546 -0.0433 0.0567 0.0910 0.0669 refined 35.5261 62.8526 50.1193 X-RAY DIFFRACTION 0.0035 0.0105 -0.0005 0.1678 0.0457 0.1459 -0.0249 0.0937 0.0842 -0.0148 -0.1227 -0.0933 0.0426 0.1026 -0.2266 0.0224 -0.0145 0.0359 0.1477 0.1425 0.1265 refined 46.4830 63.0911 41.2969 X-RAY DIFFRACTION 0.2282 -0.0144 0.0227 0.0121 -0.0047 0.0736 -0.0107 0.0046 0.1409 0.0089 -0.0242 -0.0131 0.0142 0.0371 -0.0705 0.0394 -0.0091 0.0380 0.0301 0.0170 0.0516 refined 29.0010 54.1900 51.1210 X-RAY DIFFRACTION 0.0043 0.0036 -0.0081 0.0649 -0.0726 0.0904 0.0309 -0.0443 0.0100 0.0897 -0.0944 -0.0206 0.0443 0.0129 -0.0303 0.1419 -0.1093 0.0164 0.1886 0.0449 0.0413 refined 19.2157 42.4858 79.8181 X-RAY DIFFRACTION A 9 A 29 X-RAY DIFFRACTION 1 (chain A and resid 9:29) A 30 A 80 X-RAY DIFFRACTION 2 (chain A and resid 30:80) A 81 A 85 X-RAY DIFFRACTION 3 (chain A and resid 81:85) A 86 A 156 X-RAY DIFFRACTION 4 (chain A and resid 86:156) A 157 A 179 X-RAY DIFFRACTION 5 (chain A and resid 157:179) B 7 B 28 X-RAY DIFFRACTION 6 (chain B and resid 7:28) B 29 B 53 X-RAY DIFFRACTION 7 (chain B and resid 29:53) B 54 B 82 X-RAY DIFFRACTION 8 (chain B and resid 54:82) B 83 B 158 X-RAY DIFFRACTION 9 (chain B and resid 83:158) B 159 B 179 X-RAY DIFFRACTION 10 (chain B and resid 159:179) author_and_software_defined_assembly PISA 2 dimeric 3370 -22 18170 A MSE 53 SELENOMETHIONINE A MSE 73 MET A MSE 83 SELENOMETHIONINE A MSE 103 MET A MSE 85 SELENOMETHIONINE A MSE 105 MET A MSE 132 SELENOMETHIONINE A MSE 152 MET A MSE 138 SELENOMETHIONINE A MSE 158 MET A MSE 157 SELENOMETHIONINE A MSE 177 MET B MSE 53 SELENOMETHIONINE B MSE 73 MET B MSE 83 SELENOMETHIONINE B MSE 103 MET B MSE 85 SELENOMETHIONINE B MSE 105 MET B MSE 132 SELENOMETHIONINE B MSE 152 MET B MSE 138 SELENOMETHIONINE B MSE 158 MET B MSE 157 SELENOMETHIONINE B MSE 177 MET 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N TYR 10 A N TYR 30 A O TYR 71 A O TYR 91 A O ARG 70 A O ARG 90 A N ILE 57 A N ILE 77 A O GLN 52 A O GLN 72 A N LEU 38 A N LEU 58 A N ARG 39 A N ARG 59 A O ILE 86 A O ILE 106 B N TYR 10 B N TYR 30 B O TYR 71 B O TYR 91 B O LEU 66 B O LEU 86 B N LEU 58 B N LEU 78 B O GLN 52 B O GLN 72 B N LEU 38 B N LEU 58 B N ARG 39 B N ARG 59 B O ILE 86 B O ILE 106 1 A CG GLU 64 A CG GLU 84 1 Y 1 A CD GLU 64 A CD GLU 84 1 Y 1 A OE1 GLU 64 A OE1 GLU 84 1 Y 1 A OE2 GLU 64 A OE2 GLU 84 1 Y 1 B CG GLU 8 B CG GLU 28 1 Y 1 B CD GLU 8 B CD GLU 28 1 Y 1 B OE1 GLU 8 B OE1 GLU 28 1 Y 1 B OE2 GLU 8 B OE2 GLU 28 1 Y 1 A MSE -19 A MSE 1 1 Y 1 A ALA -18 A ALA 2 1 Y 1 A HIS -17 A HIS 3 1 Y 1 A HIS -16 A HIS 4 1 Y 1 A HIS -15 A HIS 5 1 Y 1 A HIS -14 A HIS 6 1 Y 1 A HIS -13 A HIS 7 1 Y 1 A HIS -12 A HIS 8 1 Y 1 A SER -11 A SER 9 1 Y 1 A ALA -10 A ALA 10 1 Y 1 A ALA -9 A ALA 11 1 Y 1 A LEU -8 A LEU 12 1 Y 1 A GLU -7 A GLU 13 1 Y 1 A VAL -6 A VAL 14 1 Y 1 A LEU -5 A LEU 15 1 Y 1 A PHE -4 A PHE 16 1 Y 1 A GLN -3 A GLN 17 1 Y 1 A GLY -2 A GLY 18 1 Y 1 A PRO -1 A PRO 19 1 Y 1 A GLY 0 A GLY 20 1 Y 1 A MSE 1 A MSE 21 1 Y 1 A ALA 2 A ALA 22 1 Y 1 A SER 3 A SER 23 1 Y 1 A GLY 4 A GLY 24 1 Y 1 A SER 5 A SER 25 1 Y 1 A ASN 6 A ASN 26 1 Y 1 A VAL 7 A VAL 27 1 Y 1 A GLU 8 A GLU 28 1 Y 1 B MSE -19 B MSE 1 1 Y 1 B ALA -18 B ALA 2 1 Y 1 B HIS -17 B HIS 3 1 Y 1 B HIS -16 B HIS 4 1 Y 1 B HIS -15 B HIS 5 1 Y 1 B HIS -14 B HIS 6 1 Y 1 B HIS -13 B HIS 7 1 Y 1 B HIS -12 B HIS 8 1 Y 1 B SER -11 B SER 9 1 Y 1 B ALA -10 B ALA 10 1 Y 1 B ALA -9 B ALA 11 1 Y 1 B LEU -8 B LEU 12 1 Y 1 B GLU -7 B GLU 13 1 Y 1 B VAL -6 B VAL 14 1 Y 1 B LEU -5 B LEU 15 1 Y 1 B PHE -4 B PHE 16 1 Y 1 B GLN -3 B GLN 17 1 Y 1 B GLY -2 B GLY 18 1 Y 1 B PRO -1 B PRO 19 1 Y 1 B GLY 0 B GLY 20 1 Y 1 B MSE 1 B MSE 21 1 Y 1 B ALA 2 B ALA 22 1 Y 1 B SER 3 B SER 23 1 Y 1 B GLY 4 B GLY 24 1 Y 1 B SER 5 B SER 25 1 Y 1 B ASN 6 B ASN 26 1 Y 1 A GLN 75 -82.81 40.89 1 B ASN 63 55.20 18.77 1 B GLN 75 -72.84 47.24 131.950 23.0467 1.840 -2.0111 0.0000 -0.3564 5.1634 -0.0000 -3.1523 0.2298 0.1720 0.1749 0.1749 2.4020 23.6820 1518 30639 30630 4.9600 98.2000 1.000 0.500 0.8359 0.2800 RANDOM 1 0.000 SAD 23.6600 0.7200 1.0000 ML FLAT BULK SOLVENT MODEL 21.5560 0.3600 2.4020 23.6820 171 2975 0 0 2804 0.008 2870 1.044 3902 0.065 431 0.004 525 16.460 1120 0.2576 0.1778 2.4795 152 2566 2718 11 96.0000 0.2894 0.2012 2.5680 105 2643 2748 11 97.0000 0.3038 0.2058 2.6707 107 2668 2775 11 98.0000 0.2653 0.2084 2.7921 118 2675 2793 11 98.0000 0.3010 0.1988 2.9390 143 2667 2810 11 98.0000 0.2740 0.1935 3.1228 158 2610 2768 11 99.0000 0.2559 0.1763 3.3633 146 2662 2808 11 99.0000 0.2031 0.1687 3.7006 151 2638 2789 11 99.0000 0.1720 0.1288 4.2334 145 2705 2850 11 100.0000 0.1816 0.1300 5.3236 143 2667 2810 11 99.0000 0.2132 0.1930 23.6834 150 2611 2761 11 97.0000 2.400 25.000 4JNH 1 1 0.061 1.000 1 12.000 3.200 98.100 0.110 2.400 2.490 2993 0.936 1 2.800 95.800 0.110 2.490 2.590 3023 0.884 1 2.900 96.500 0.089 2.590 2.700 3041 0.927 1 3.000 97.500 0.089 2.700 2.840 3055 1.003 1 3.100 98.700 0.075 2.840 3.020 3076 0.999 1 3.400 98.200 0.071 3.020 3.260 3094 1.079 1 3.400 98.900 0.060 3.260 3.580 3098 1.036 1 3.400 99.300 0.052 3.580 4.100 3104 1.079 1 3.600 99.700 0.049 4.100 5.160 3096 0.988 1 3.500 99.100 0.049 5.160 25.000 3033 1.012 1 3.200 97.100 data reduction Zbyszek Otwinowski hkl@hkl-xray.com http://www.hkl-xray.com/ DENZO program data scaling Zbyszek Otwinowski hkl@hkl-xray.com http://www.hkl-xray.com/ SCALEPACK program refinement Paul D. Adams PDAdams@lbl.gov C++ http://www.phenix-online.org/ PHENIX package 1.7_650 data extraction PDB deposit@deposit.rcsb.org April 22, 2011 C++ http://sw-tools.pdb.org/apps/PDB_EXTRACT/ PDB_EXTRACT package 3.11 data collection GDA phasing SOLVE Gag polyprotein A unique spumavirus gag N-terminal domain with functional properties of orthoretroviral Matrix and Capsid 1 N N 1 N N 2 N N 2 N N A ASP 13 A ASP 33 HELX_P A ARG 24 A ARG 44 1 1 12 A PRO 89 A PRO 109 HELX_P A GLN 94 A GLN 114 1 2 6 A GLU 104 A GLU 124 HELX_P A ALA 113 A ALA 133 5 3 10 A ASP 121 A ASP 141 HELX_P A TYR 127 A TYR 147 1 4 7 A THR 131 A THR 151 HELX_P A ALA 136 A ALA 156 1 5 6 A THR 139 A THR 159 HELX_P A ARG 178 A ARG 198 1 6 40 B ASP 13 B ASP 33 HELX_P B ARG 24 B ARG 44 1 7 12 B PRO 89 B PRO 109 HELX_P B LEU 95 B LEU 115 1 8 7 B GLU 104 B GLU 124 HELX_P B ALA 113 B ALA 133 5 9 10 B ASP 121 B ASP 141 HELX_P B TYR 127 B TYR 147 1 10 7 B THR 131 B THR 151 HELX_P B ALA 136 B ALA 156 1 11 6 B THR 139 B THR 159 HELX_P B GLU 177 B GLU 197 1 12 39 covale 1.319 A GLN 52 A C GLN 72 1_555 A MSE 53 A N MSE 73 1_555 covale 1.325 A MSE 53 A C MSE 73 1_555 A VAL 54 A N VAL 74 1_555 covale 1.324 A THR 82 A C THR 102 1_555 A MSE 83 A N MSE 103 1_555 covale 1.323 A MSE 83 A C MSE 103 1_555 A PHE 84 A N PHE 104 1_555 covale 1.324 A PHE 84 A C PHE 104 1_555 A MSE 85 A N MSE 105 1_555 covale 1.324 A MSE 85 A C MSE 105 1_555 A ILE 86 A N ILE 106 1_555 covale 1.330 A THR 131 A C THR 151 1_555 A MSE 132 A N MSE 152 1_555 covale 1.325 A MSE 132 A C MSE 152 1_555 A ALA 133 A N ALA 153 1_555 covale 1.327 A GLN 137 A C GLN 157 1_555 A MSE 138 A N MSE 158 1_555 covale 1.332 A MSE 138 A C MSE 158 1_555 A THR 139 A N THR 159 1_555 covale 1.330 A GLN 156 A C GLN 176 1_555 A MSE 157 A N MSE 177 1_555 covale 1.320 A MSE 157 A C MSE 177 1_555 A ILE 158 A N ILE 178 1_555 covale 1.327 B GLN 52 B C GLN 72 1_555 B MSE 53 B N MSE 73 1_555 covale 1.326 B MSE 53 B C MSE 73 1_555 B VAL 54 B N VAL 74 1_555 covale 1.323 B THR 82 B C THR 102 1_555 B MSE 83 B N MSE 103 1_555 covale 1.325 B MSE 83 B C MSE 103 1_555 B PHE 84 B N PHE 104 1_555 covale 1.331 B PHE 84 B C PHE 104 1_555 B MSE 85 B N MSE 105 1_555 covale 1.332 B MSE 85 B C MSE 105 1_555 B ILE 86 B N ILE 106 1_555 covale 1.327 B THR 131 B C THR 151 1_555 B MSE 132 B N MSE 152 1_555 covale 1.327 B MSE 132 B C MSE 152 1_555 B ALA 133 B N ALA 153 1_555 covale 1.331 B GLN 137 B C GLN 157 1_555 B MSE 138 B N MSE 158 1_555 covale 1.333 B MSE 138 B C MSE 158 1_555 B THR 139 B N THR 159 1_555 covale 1.332 B GLN 156 B C GLN 176 1_555 B MSE 157 B N MSE 177 1_555 covale 1.322 B MSE 157 B C MSE 177 1_555 B ILE 158 B N ILE 178 1_555 VIRAL PROTEIN Gag, coiled-coil, Viral protein, Env GAG_FOAMV UNP 1 1 P14349 MASGSNVEEYELDVEALVVILRDRNIPRNPLHGEVIGLRLTEGWWGQIERFQMVRLILQDDDNEPLQRPRYEVIQRAVNP HTMFMISGPLAELQLAFQDLDLPEGPLRFGPLANGHYVQGDPYSSSYRPVTMAETAQMTRDELEDVLNTQSEIEIQMINL LELYEVETRALRRQLAERS 1 179 4JNH 1 179 P14349 A 1 21 199 1 179 4JNH 1 179 P14349 B 1 21 199 1 EXPRESSION TAG MSE -19 4JNH A P14349 UNP 1 1 EXPRESSION TAG ALA -18 4JNH A P14349 UNP 2 1 EXPRESSION TAG HIS -17 4JNH A P14349 UNP 3 1 EXPRESSION TAG HIS -16 4JNH A P14349 UNP 4 1 EXPRESSION TAG HIS -15 4JNH A P14349 UNP 5 1 EXPRESSION TAG HIS -14 4JNH A P14349 UNP 6 1 EXPRESSION TAG HIS -13 4JNH A P14349 UNP 7 1 EXPRESSION TAG HIS -12 4JNH A P14349 UNP 8 1 EXPRESSION TAG SER -11 4JNH A P14349 UNP 9 1 EXPRESSION TAG ALA -10 4JNH A P14349 UNP 10 1 EXPRESSION TAG ALA -9 4JNH A P14349 UNP 11 1 EXPRESSION TAG LEU -8 4JNH A P14349 UNP 12 1 EXPRESSION TAG GLU -7 4JNH A P14349 UNP 13 1 EXPRESSION TAG VAL -6 4JNH A P14349 UNP 14 1 EXPRESSION TAG LEU -5 4JNH A P14349 UNP 15 1 EXPRESSION TAG PHE -4 4JNH A P14349 UNP 16 1 EXPRESSION TAG GLN -3 4JNH A P14349 UNP 17 1 EXPRESSION TAG GLY -2 4JNH A P14349 UNP 18 1 EXPRESSION TAG PRO -1 4JNH A P14349 UNP 19 1 EXPRESSION TAG GLY 0 4JNH A P14349 UNP 20 1 ASP CONFLICT ASN 60 4JNH A P14349 UNP 60 80 2 EXPRESSION TAG MSE -19 4JNH B P14349 UNP 1 2 EXPRESSION TAG ALA -18 4JNH B P14349 UNP 2 2 EXPRESSION TAG HIS -17 4JNH B P14349 UNP 3 2 EXPRESSION TAG HIS -16 4JNH B P14349 UNP 4 2 EXPRESSION TAG HIS -15 4JNH B P14349 UNP 5 2 EXPRESSION TAG HIS -14 4JNH B P14349 UNP 6 2 EXPRESSION TAG HIS -13 4JNH B P14349 UNP 7 2 EXPRESSION TAG HIS -12 4JNH B P14349 UNP 8 2 EXPRESSION TAG SER -11 4JNH B P14349 UNP 9 2 EXPRESSION TAG ALA -10 4JNH B P14349 UNP 10 2 EXPRESSION TAG ALA -9 4JNH B P14349 UNP 11 2 EXPRESSION TAG LEU -8 4JNH B P14349 UNP 12 2 EXPRESSION TAG GLU -7 4JNH B P14349 UNP 13 2 EXPRESSION TAG VAL -6 4JNH B P14349 UNP 14 2 EXPRESSION TAG LEU -5 4JNH B P14349 UNP 15 2 EXPRESSION TAG PHE -4 4JNH B P14349 UNP 16 2 EXPRESSION TAG GLN -3 4JNH B P14349 UNP 17 2 EXPRESSION TAG GLY -2 4JNH B P14349 UNP 18 2 EXPRESSION TAG PRO -1 4JNH B P14349 UNP 19 2 EXPRESSION TAG GLY 0 4JNH B P14349 UNP 20 2 ASP CONFLICT ASN 60 4JNH B P14349 UNP 60 80 5 5 anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel parallel A TYR 10 A TYR 30 A GLU 11 A GLU 31 A PRO 65 A PRO 85 A VAL 73 A VAL 93 A ARG 50 A ARG 70 A GLN 59 A GLN 79 A VAL 35 A VAL 55 A LEU 40 A LEU 60 A MSE 85 A MSE 105 A GLY 88 A GLY 108 B GLU 9 B GLU 29 B GLU 11 B GLU 31 B PRO 65 B PRO 85 B VAL 73 B VAL 93 B ARG 50 B ARG 70 B GLN 59 B GLN 79 B VAL 35 B VAL 55 B LEU 40 B LEU 60 B MSE 85 B MSE 105 B GLY 88 B GLY 108 4 P 1 21 1