0.010414 0.000000 0.000000 -0.000000 0.010414 0.000000 0.000000 -0.000000 0.010414 0.000000 0.000000 0.000000 Seattle Structural Genomics Center for Infectious Disease (SSGCID) http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 24 90.000 90.000 90.000 96.020 96.020 96.020 C2 H3 O2 -1 59.044 ACETATE ION non-polymer C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking Na 1 22.990 SODIUM ION non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking O4 S -2 96.063 SULFATE ION non-polymer C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N C N 2 N O N 3 N O N 4 N C N 5 N H N 6 N H N 7 N H N 8 N N N 9 S C N 10 N C N 11 N O N 12 N C N 13 N O N 14 N H N 15 N H N 16 N H N 17 N H N 18 N H N 19 N H N 20 N H N 21 N N N 22 S C N 23 N C N 24 N O N 25 N C N 26 N C N 27 N C N 28 N N N 29 N C N 30 N N N 31 N N N 32 N O N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N H N 42 N H N 43 N H N 44 N H N 45 N H N 46 N H N 47 N H N 48 N N N 49 S C N 50 N C N 51 N O N 52 N C N 53 N C N 54 N O N 55 N N N 56 N O N 57 N H N 58 N H N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N N N 66 S C N 67 N C N 68 N O N 69 N C N 70 N C N 71 N O N 72 N O N 73 N O N 74 N H N 75 N H N 76 N H N 77 N H N 78 N H N 79 N H N 80 N H N 81 N N N 82 S C N 83 N C N 84 N O N 85 N C N 86 N C N 87 N C N 88 N O N 89 N N N 90 N O N 91 N H N 92 N H N 93 N H N 94 N H N 95 N H N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N N N 102 S C N 103 N C N 104 N O N 105 N C N 106 N C N 107 N C N 108 N O N 109 N O N 110 N O N 111 N H N 112 N H N 113 N H N 114 N H N 115 N H N 116 N H N 117 N H N 118 N H N 119 N H N 120 N N N 121 N C N 122 N C N 123 N O N 124 N O N 125 N H N 126 N H N 127 N H N 128 N H N 129 N H N 130 N N N 131 S C N 132 N C N 133 N O N 134 N C Y 135 N C Y 136 N N Y 137 N C Y 138 N C Y 139 N N N 140 N O N 141 N H N 142 N H N 143 N H N 144 N H N 145 N H N 146 N H N 147 N H N 148 N H N 149 N H N 150 N H N 151 N O N 152 N H N 153 N H N 154 N N N 155 S C N 156 N C N 157 N O N 158 S C N 159 N C N 160 N C N 161 N C N 162 N O N 163 N H N 164 N H N 165 N H N 166 N H N 167 N H N 168 N H N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N N N 177 S C N 178 N C N 179 N O N 180 N C N 181 N C N 182 N C N 183 N C N 184 N O N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N N N 199 S C N 200 N C N 201 N O N 202 N C N 203 N C N 204 N C N 205 N C N 206 N N N 207 N O N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N N N 224 S C N 225 N C N 226 N O N 227 N C N 228 N C N 229 N S N 230 N C N 231 N O N 232 N H N 233 N H N 234 N H N 235 N H N 236 N H N 237 N H N 238 N H N 239 N H N 240 N H N 241 N H N 242 N H N 243 N NA N 244 N N N 245 S C N 246 N C N 247 N O N 248 N C Y 249 N C Y 250 N C Y 251 N C Y 252 N C Y 253 N C Y 254 N C N 255 N O N 256 N H N 257 N H N 258 N H N 259 N H N 260 N H N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N N N 268 S C N 269 N C N 270 N O N 271 N C N 272 N C N 273 N C N 274 N O N 275 N H N 276 N H N 277 N H N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N N N 285 S C N 286 N C N 287 N O N 288 N C N 289 N O N 290 N O N 291 N H N 292 N H N 293 N H N 294 N H N 295 N H N 296 N H N 297 N H N 298 N S N 299 N O N 300 N O N 301 N O N 302 N O N 303 N N N 304 S C N 305 N C N 306 N O N 307 R C N 308 N O N 309 N C N 310 N O N 311 N H N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N N N 321 S C N 322 N C N 323 N O N 324 N C Y 325 N C Y 326 N C Y 327 N C Y 328 N N Y 329 N C Y 330 N C Y 331 N C Y 332 N C Y 333 N C N 334 N O N 335 N H N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N N N 348 S C N 349 N C N 350 N O N 351 N C Y 352 N C Y 353 N C Y 354 N C Y 355 N C Y 356 N C Y 357 N C N 358 N O N 359 N O N 360 N H N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N N N 372 S C N 373 N C N 374 N O N 375 N C N 376 N C N 377 N C N 378 N O N 379 N H N 380 N H N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 1 N doub N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N doub N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N doub N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N sing N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N doub N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N doub N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N doub N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N sing N 67 N doub N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N doub N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N doub N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N doub N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N doub N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N doub N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N doub N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N doub N 129 N sing N 130 N sing N 131 N sing N 132 N sing Y 133 N sing Y 134 N doub Y 135 N doub N 136 N sing Y 137 N sing N 138 N sing Y 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N doub N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N doub N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N doub N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N doub N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N doub N 237 N sing N 238 N sing N 239 N sing N 240 N sing Y 241 N doub Y 242 N sing Y 243 N sing N 244 N sing Y 245 N doub N 246 N sing Y 247 N doub N 248 N sing Y 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N doub N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N doub N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N doub N 284 N doub N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N doub N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N doub N 310 N sing N 311 N sing N 312 N sing N 313 N sing Y 314 N doub Y 315 N sing Y 316 N sing N 317 N sing Y 318 N doub Y 319 N sing Y 320 N sing N 321 N sing Y 322 N sing Y 323 N doub N 324 N sing Y 325 N doub N 326 N sing Y 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N doub N 338 N sing N 339 N sing N 340 N sing N 341 N sing Y 342 N doub Y 343 N sing Y 344 N sing N 345 N sing Y 346 N doub N 347 N sing Y 348 N doub N 349 N sing Y 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N doub N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing To be Published 0353 The structure of CyaY from Burkholderia cenocepacia 10.2210/pdb4jpd/pdb pdb_00004jpd 1 CCD 2012-10-18 ADSC QUANTUM 315r SINGLE WAVELENGTH M x-ray 1 0.97 1.0 5.0.1 ALS 0.97 SYNCHROTRON ALS BEAMLINE 5.0.1 12236.501 Protein CyaY 1 man polymer 59.044 ACETATE ION 2 syn non-polymer 22.990 SODIUM ION 1 syn non-polymer 96.063 SULFATE ION 1 syn non-polymer 18.015 water 115 nat water no no GPGSMSDTEYLARAEAVLAAVERTVDVANDGDHDIDLERNGSVLTLTFENGSKIIVNLQPPMKEVWIAAKAGGFHYRFID GEWRDTRTGTEFFSALTDYATQQAGLPITFSA GPGSMSDTEYLARAEAVLAAVERTVDVANDGDHDIDLERNGSVLTLTFENGSKIIVNLQPPMKEVWIAAKAGGFHYRFID GEWRDTRTGTEFFSALTDYATQQAGLPITFSA A SSGCID-BuceA.18084.a polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n J2315 / LMG 16656 sample cyaY, BceJ2315_02750, BCAL0273 216591 Burkholderia cenocepacia 562 Escherichia coli 1 3.01 59.20 VAPOR DIFFUSION, SITTING DROP 4.5 50% PEG400, 200mM LiSO4, 100mM Na acetate, 9.46mg/ml BuceA.18084.a.PW33863, direct cryoprotection, pH 4.5, VAPOR DIFFUSION, SITTING DROP, temperature 298K 298 Seattle Structural Genomics Center for Infectious Disease SSGCID chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model struct_ref_seq_dif struct_site repository Initial release Data collection Database references Derived calculations Refinement description 1 0 2013-03-27 1 1 2023-09-20 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id Y RCSB Y RCSB 2013-03-19 REL REL ACT ACETATE ION NA SODIUM ION SO4 SULFATE ION HOH water 1EW4 PDB entry 1EW4 PDB experimental model ACT 1 2 ACT ACT 201 A ACT 2 2 ACT ACT 202 A NA 1 3 NA NA 203 A SO4 1 4 SO4 SO4 204 A HOH 2 5 HOH HOH 301 A HOH 3 5 HOH HOH 302 A HOH 4 5 HOH HOH 303 A HOH 5 5 HOH HOH 304 A HOH 6 5 HOH HOH 305 A HOH 7 5 HOH HOH 306 A HOH 8 5 HOH HOH 307 A HOH 9 5 HOH HOH 308 A HOH 10 5 HOH HOH 309 A HOH 11 5 HOH HOH 310 A HOH 14 5 HOH HOH 311 A HOH 15 5 HOH HOH 312 A HOH 16 5 HOH HOH 313 A HOH 17 5 HOH HOH 314 A HOH 18 5 HOH HOH 315 A HOH 19 5 HOH HOH 316 A HOH 20 5 HOH HOH 317 A HOH 21 5 HOH HOH 318 A HOH 23 5 HOH HOH 319 A HOH 24 5 HOH HOH 320 A HOH 25 5 HOH HOH 321 A HOH 26 5 HOH HOH 322 A HOH 27 5 HOH HOH 323 A HOH 29 5 HOH HOH 324 A HOH 30 5 HOH HOH 325 A HOH 31 5 HOH HOH 326 A HOH 32 5 HOH HOH 327 A HOH 33 5 HOH HOH 328 A HOH 34 5 HOH HOH 329 A HOH 36 5 HOH HOH 330 A HOH 37 5 HOH HOH 331 A HOH 39 5 HOH HOH 332 A HOH 40 5 HOH HOH 333 A HOH 41 5 HOH HOH 334 A HOH 42 5 HOH HOH 335 A HOH 43 5 HOH HOH 336 A HOH 44 5 HOH HOH 337 A HOH 46 5 HOH HOH 338 A HOH 47 5 HOH HOH 339 A HOH 48 5 HOH HOH 340 A HOH 49 5 HOH HOH 341 A HOH 50 5 HOH HOH 342 A HOH 51 5 HOH HOH 343 A HOH 53 5 HOH HOH 344 A HOH 54 5 HOH HOH 345 A HOH 55 5 HOH HOH 346 A HOH 56 5 HOH HOH 347 A HOH 57 5 HOH HOH 348 A HOH 58 5 HOH HOH 349 A HOH 59 5 HOH HOH 350 A HOH 60 5 HOH HOH 351 A HOH 61 5 HOH HOH 352 A HOH 62 5 HOH HOH 353 A HOH 63 5 HOH HOH 354 A HOH 64 5 HOH HOH 355 A HOH 65 5 HOH HOH 356 A HOH 66 5 HOH HOH 357 A HOH 67 5 HOH HOH 358 A HOH 69 5 HOH HOH 359 A HOH 71 5 HOH HOH 360 A HOH 72 5 HOH HOH 361 A HOH 73 5 HOH HOH 362 A HOH 75 5 HOH HOH 363 A HOH 76 5 HOH HOH 364 A HOH 77 5 HOH HOH 365 A HOH 79 5 HOH HOH 366 A HOH 80 5 HOH HOH 367 A HOH 82 5 HOH HOH 368 A HOH 83 5 HOH HOH 369 A HOH 84 5 HOH HOH 370 A HOH 85 5 HOH HOH 371 A HOH 86 5 HOH HOH 372 A HOH 88 5 HOH HOH 373 A HOH 89 5 HOH HOH 374 A HOH 90 5 HOH HOH 375 A HOH 92 5 HOH HOH 376 A HOH 94 5 HOH HOH 377 A HOH 95 5 HOH HOH 378 A HOH 96 5 HOH HOH 379 A HOH 97 5 HOH HOH 380 A HOH 99 5 HOH HOH 381 A HOH 100 5 HOH HOH 382 A HOH 101 5 HOH HOH 383 A HOH 102 5 HOH HOH 384 A HOH 103 5 HOH HOH 385 A HOH 104 5 HOH HOH 386 A HOH 105 5 HOH HOH 387 A HOH 106 5 HOH HOH 388 A HOH 107 5 HOH HOH 389 A HOH 109 5 HOH HOH 390 A HOH 110 5 HOH HOH 391 A HOH 112 5 HOH HOH 392 A HOH 114 5 HOH HOH 393 A HOH 116 5 HOH HOH 394 A HOH 117 5 HOH HOH 395 A HOH 118 5 HOH HOH 396 A HOH 119 5 HOH HOH 397 A HOH 122 5 HOH HOH 398 A HOH 123 5 HOH HOH 399 A HOH 125 5 HOH HOH 400 A HOH 126 5 HOH HOH 401 A HOH 127 5 HOH HOH 402 A HOH 128 5 HOH HOH 403 A HOH 129 5 HOH HOH 404 A HOH 130 5 HOH HOH 405 A HOH 131 5 HOH HOH 406 A HOH 132 5 HOH HOH 407 A HOH 133 5 HOH HOH 408 A HOH 134 5 HOH HOH 409 A HOH 135 5 HOH HOH 410 A HOH 136 5 HOH HOH 411 A HOH 137 5 HOH HOH 412 A HOH 138 5 HOH HOH 413 A HOH 139 5 HOH HOH 414 A HOH 140 5 HOH HOH 415 A 1.950 1.950 48.010 48.010 Phaser MODE: MR_AUTO n 1 -3 A n 2 -2 A n 3 -1 A SER 0 n 4 SER 0 A MET 1 n 5 MET 1 A SER 2 n 6 SER 2 A ASP 3 n 7 ASP 3 A THR 4 n 8 THR 4 A GLU 5 n 9 GLU 5 A TYR 6 n 10 TYR 6 A LEU 7 n 11 LEU 7 A ALA 8 n 12 ALA 8 A ARG 9 n 13 ARG 9 A ALA 10 n 14 ALA 10 A GLU 11 n 15 GLU 11 A ALA 12 n 16 ALA 12 A VAL 13 n 17 VAL 13 A LEU 14 n 18 LEU 14 A ALA 15 n 19 ALA 15 A ALA 16 n 20 ALA 16 A VAL 17 n 21 VAL 17 A GLU 18 n 22 GLU 18 A ARG 19 n 23 ARG 19 A THR 20 n 24 THR 20 A VAL 21 n 25 VAL 21 A ASP 22 n 26 ASP 22 A VAL 23 n 27 VAL 23 A ALA 24 n 28 ALA 24 A ASN 25 n 29 ASN 25 A ASP 26 n 30 ASP 26 A GLY 27 n 31 GLY 27 A ASP 28 n 32 ASP 28 A HIS 29 n 33 HIS 29 A ASP 30 n 34 ASP 30 A ILE 31 n 35 ILE 31 A ASP 32 n 36 ASP 32 A LEU 33 n 37 LEU 33 A GLU 34 n 38 GLU 34 A ARG 35 n 39 ARG 35 A ASN 36 n 40 ASN 36 A GLY 37 n 41 GLY 37 A SER 38 n 42 SER 38 A VAL 39 n 43 VAL 39 A LEU 40 n 44 LEU 40 A THR 41 n 45 THR 41 A LEU 42 n 46 LEU 42 A THR 43 n 47 THR 43 A PHE 44 n 48 PHE 44 A GLU 45 n 49 GLU 45 A ASN 46 n 50 ASN 46 A GLY 47 n 51 GLY 47 A SER 48 n 52 SER 48 A LYS 49 n 53 LYS 49 A ILE 50 n 54 ILE 50 A ILE 51 n 55 ILE 51 A VAL 52 n 56 VAL 52 A ASN 53 n 57 ASN 53 A LEU 54 n 58 LEU 54 A GLN 55 n 59 GLN 55 A PRO 56 n 60 PRO 56 A PRO 57 n 61 PRO 57 A MET 58 n 62 MET 58 A LYS 59 n 63 LYS 59 A GLU 60 n 64 GLU 60 A VAL 61 n 65 VAL 61 A TRP 62 n 66 TRP 62 A ILE 63 n 67 ILE 63 A ALA 64 n 68 ALA 64 A ALA 65 n 69 ALA 65 A LYS 66 n 70 LYS 66 A ALA 67 n 71 ALA 67 A GLY 68 n 72 GLY 68 A GLY 69 n 73 GLY 69 A PHE 70 n 74 PHE 70 A HIS 71 n 75 HIS 71 A TYR 72 n 76 TYR 72 A ARG 73 n 77 ARG 73 A PHE 74 n 78 PHE 74 A ILE 75 n 79 ILE 75 A ASP 76 n 80 ASP 76 A GLY 77 n 81 GLY 77 A GLU 78 n 82 GLU 78 A TRP 79 n 83 TRP 79 A ARG 80 n 84 ARG 80 A ASP 81 n 85 ASP 81 A THR 82 n 86 THR 82 A ARG 83 n 87 ARG 83 A THR 84 n 88 THR 84 A GLY 85 n 89 GLY 85 A THR 86 n 90 THR 86 A GLU 87 n 91 GLU 87 A PHE 88 n 92 PHE 88 A PHE 89 n 93 PHE 89 A SER 90 n 94 SER 90 A ALA 91 n 95 ALA 91 A LEU 92 n 96 LEU 92 A THR 93 n 97 THR 93 A ASP 94 n 98 ASP 94 A TYR 95 n 99 TYR 95 A ALA 96 n 100 ALA 96 A THR 97 n 101 THR 97 A GLN 98 n 102 GLN 98 A GLN 99 n 103 GLN 99 A ALA 100 n 104 ALA 100 A GLY 101 n 105 GLY 101 A LEU 102 n 106 LEU 102 A PRO 103 n 107 PRO 103 A ILE 104 n 108 ILE 104 A THR 105 n 109 THR 105 A PHE 106 n 110 PHE 106 A SER 107 n 111 SER 107 A ALA 108 n 112 ALA 108 A 4.4269 -1.5942 2.3137 0.7888 -0.6738 1.4161 -0.0228 0.1979 0.0400 -0.0179 -0.0117 -0.0330 -0.0082 0.1439 0.0344 0.0574 0.0069 0.0063 0.0854 0.0016 0.0585 refined 68.6596 55.7818 49.4496 X-RAY DIFFRACTION 1.1871 -0.2859 -0.3591 0.8720 0.2367 1.4734 -0.0208 0.0665 -0.0483 -0.0206 0.0472 -0.0521 0.1356 0.0908 -0.0263 0.0519 0.0257 0.0069 0.0554 -0.0111 0.0349 refined 69.5247 46.7606 45.2067 X-RAY DIFFRACTION 5.0352 0.1103 -2.3942 0.8526 2.2123 7.1880 -0.2670 -0.2424 -0.1394 0.1264 0.0956 0.0381 0.5004 0.4816 0.1714 0.1332 0.1120 0.0247 0.1307 0.0552 0.0434 refined 74.4595 40.5597 52.8845 X-RAY DIFFRACTION A 0 A 26 X-RAY DIFFRACTION 1 A 27 A 90 X-RAY DIFFRACTION 2 A 91 A 108 X-RAY DIFFRACTION 3 author_and_software_defined_assembly PISA 6 hexameric 16970 -174 23440 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 5_555 z,x,y crystal symmetry operation 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1.0000000000 0.0000000000 0.0000000000 9_555 y,z,x crystal symmetry operation 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 14_666 -y+5/4,-x+5/4,-z+5/4 crystal symmetry operation 120.0250000000 120.0250000000 120.0250000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 -1.0000000000 0.0000000000 19_666 -x+5/4,-z+5/4,-y+5/4 crystal symmetry operation 120.0250000000 120.0250000000 120.0250000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 -1.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 24_666 -z+5/4,-y+5/4,-x+5/4 crystal symmetry operation 120.0250000000 120.0250000000 120.0250000000 A N GLU 34 A N GLU 38 A O THR 41 A O THR 45 A N LEU 42 A N LEU 46 A O ILE 50 A O ILE 54 A N ASN 53 A N ASN 57 A O TRP 62 A O TRP 66 A N ALA 65 A N ALA 69 A O GLY 68 A O GLY 72 A N ILE 75 A N ILE 79 A O GLU 78 A O GLU 82 1 A NA 203 D NA 1 A SO4 204 E SO4 1 A SO4 204 E SO4 1 A HOH 302 F HOH 1 A HOH 311 F HOH 1 A HOH 328 F HOH 1 A HOH 343 F HOH 1 A HOH 412 F HOH 1 A OG SER 0 A OG SER 4 1 Y 1 A CG ASP 28 A CG ASP 32 1 Y 1 A OD1 ASP 28 A OD1 ASP 32 1 Y 1 A OD2 ASP 28 A OD2 ASP 32 1 Y 1 A CG GLU 34 A CG GLU 38 1 Y 1 A CD GLU 34 A CD GLU 38 1 Y 1 A OE1 GLU 34 A OE1 GLU 38 1 Y 1 A OE2 GLU 34 A OE2 GLU 38 1 Y 1 A CG GLU 45 A CG GLU 49 1 Y 1 A CD GLU 45 A CD GLU 49 1 Y 1 A OE1 GLU 45 A OE1 GLU 49 1 Y 1 A OE2 GLU 45 A OE2 GLU 49 1 Y 1 A CG LYS 49 A CG LYS 53 1 Y 1 A CD LYS 49 A CD LYS 53 1 Y 1 A CE LYS 49 A CE LYS 53 1 Y 1 A NZ LYS 49 A NZ LYS 53 1 Y 1 A GLY -3 A GLY 1 1 Y 1 A PRO -2 A PRO 2 1 Y 1 A GLY -1 A GLY 3 1 Y 1 A A O O HOH HOH 403 403 2.16 1_555 13_545 55.810 18.3399 4.430 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.9550 0.9390 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS 0.1959 0.1624 0.1640 1.9000 42.9800 584 11700 4.8000 98.4100 0.1688 0.1405 1.000 0.330 0.8886 3.8890 0.0620 0.1130 0.1108 RANDOM 1 THROUGHOUT 0.000 MOLECULAR REPLACEMENT 0.1130 0.1110 0.8000 0.8000 1.2000 PDB entry 1EW4 MAXIMUM LIKELIHOOD MASK 1.9000 42.9800 115 961 14 0 832 0.011 0.019 898 0.001 0.020 821 1.349 1.948 1234 0.775 3.000 1882 5.785 5.000 122 37.008 24.186 43 11.243 15.000 135 13.889 15.000 6 0.083 0.200 142 0.006 0.020 1060 0.001 0.020 214 0.895 0.893 451 0.869 0.883 448 1.548 1.314 563 0.2280 0.1860 1.9490 36 805 841 20 93.6500 20.707 1.90 42.9800 4JPD 11700 -3.000 0.111 1 21.420 100.000 0.437 1.90 2.000 6.750 11845 836 1 100.000 0.374 2.000 2.060 7.890 11425 800 1 100.000 0.306 2.060 2.120 9.740 11224 787 1 100.000 0.274 2.120 2.180 10.860 10931 770 1 100.000 0.229 2.180 2.250 12.840 10432 738 1 100.000 0.211 2.250 2.330 13.740 10496 739 1 100.000 0.188 2.330 2.420 14.980 9785 694 1 100.000 0.165 2.420 2.520 17.350 9445 671 1 100.000 0.147 2.520 2.630 18.970 9168 650 1 100.000 0.136 2.630 2.760 19.870 8790 629 1 100.000 0.106 2.760 2.910 25.100 8438 603 1 100.000 0.092 2.910 3.080 27.500 7822 566 1 100.000 0.081 3.080 3.300 30.790 7418 539 1 100.000 0.063 3.300 3.560 37.770 6814 504 1 100.000 0.058 3.560 3.900 39.340 6208 462 1 100.000 0.050 3.900 4.360 43.370 5701 440 1 100.000 0.046 4.360 5.040 47.910 5029 380 1 100.000 0.060 5.040 6.170 37.290 4349 337 1 100.000 0.050 6.170 8.720 40.840 3380 273 1 100.000 data scaling Wolfgang Kabsch http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html XSCALE package phasing Randy J. Read cimr-phaser@lists.cam.ac.uk Mon Oct 8 13:56:31 2012 (svn ) http://www-structmed.cimr.cam.ac.uk/phaser/ PHASER program 2.5.2 refinement Garib N. Murshudov garib@ysbl.york.ac.uk Fortran_77 http://www.ccp4.ac.uk/dist/html/refmac5.html REFMAC program data extraction PDB deposit@deposit.rcsb.org April 22, 2011 C++ http://sw-tools.pdb.org/apps/PDB_EXTRACT/ PDB_EXTRACT package 3.11 data reduction XDS The structure of CyaY from Burkholderia cenocepacia 1 N N 2 N N 2 N N 3 N N 4 N N 5 N N A ASP 3 A ASP 7 HELX_P A GLY 27 A GLY 31 1 1 25 A PRO 56 A PRO 60 HELX_P A MET 58 A MET 62 5 2 3 A GLU 87 A GLU 91 HELX_P A GLY 101 A GLY 105 1 3 15 METAL BINDING PROTEIN SSGCID, Seattle Structural Genomics Center for Infectious Disease, CyaY, Frataxin, iron binding protein, METAL BINDING PROTEIN CYAY_BURCJ UNP 1 1 B4E5Z6 MSDTEYLARAEAVLAAVERTVDVANDGDHDIDLERNGSVLTLTFENGSKIIVNLQPPMKEVWIAAKAGGFHYRFIDGEWR DTRTGTEFFSALTDYATQQAGLPITFSA 1 108 4JPD 1 108 B4E5Z6 A 1 5 112 1 expression tag GLY -3 4JPD A B4E5Z6 UNP 1 1 expression tag PRO -2 4JPD A B4E5Z6 UNP 2 1 expression tag GLY -1 4JPD A B4E5Z6 UNP 3 1 expression tag SER 0 4JPD A B4E5Z6 UNP 4 6 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A ASP 32 A ASP 36 A ASN 36 A ASN 40 A VAL 39 A VAL 43 A THR 43 A THR 47 A LYS 49 A LYS 53 A GLN 55 A GLN 59 A GLU 60 A GLU 64 A ALA 65 A ALA 69 A GLY 68 A GLY 72 A ILE 75 A ILE 79 A GLU 78 A GLU 82 A ASP 81 A ASP 85 BINDING SITE FOR RESIDUE ACT A 201 A ACT 201 Software 7 BINDING SITE FOR RESIDUE ACT A 202 A ACT 202 Software 6 BINDING SITE FOR RESIDUE NA A 203 A NA 203 Software 3 BINDING SITE FOR RESIDUE SO4 A 204 A SO4 204 Software 9 A HIS 29 A HIS 33 7 1_555 A ASP 30 A ASP 34 7 1_555 A ILE 31 A ILE 35 7 1_555 A PHE 44 A PHE 48 7 1_555 A GLU 45 A GLU 49 7 1_555 A ALA 100 A ALA 104 7 1_555 A HOH 320 F HOH 7 1_555 A HIS 71 A HIS 75 6 1_555 A THR 82 A THR 86 6 1_555 A ARG 83 A ARG 87 6 1_555 A ARG 83 A ARG 87 6 13_545 A HOH 313 F HOH 6 13_545 A HOH 351 F HOH 6 1_555 A GLY 77 A GLY 81 3 5_555 A GLY 77 A GLY 81 3 9_555 A GLY 77 A GLY 81 3 1_555 A ARG 9 A ARG 13 9 1_555 A ARG 9 A ARG 13 9 9_555 A ARG 9 A ARG 13 9 5_555 A HOH 370 F HOH 9 9_555 A HOH 370 F HOH 9 1_555 A HOH 370 F HOH 9 5_555 A HOH 374 F HOH 9 1_555 A HOH 374 F HOH 9 5_555 A HOH 374 F HOH 9 9_555 212 P 43 3 2