0.008587
0.000000
0.002586
0.000000
0.024090
0.000000
0.000000
0.000000
0.011551
0.000000
0.000000
0.000000
Grigg, J.C.
Ke, A.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.000
106.760
90.000
116.461
41.511
90.417
C10 H14 N5 O7 P
347.221
y
ADENOSINE-5'-MONOPHOSPHATE
RNA linking
C9 H14 N3 O8 P
323.197
y
CYTIDINE-5'-MONOPHOSPHATE
RNA linking
C10 H14 N5 O8 P
363.221
y
GUANOSINE-5'-MONOPHOSPHATE
RNA linking
C10 H16 N5 O14 P3
523.180
n
GUANOSINE-5'-TRIPHOSPHATE
non-polymer
H2 O
18.015
WATER
non-polymer
Mg 2
24.305
MAGNESIUM ION
non-polymer
C9 H13 N2 O9 P
324.181
y
URIDINE-5'-MONOPHOSPHATE
RNA linking
N
1
N
O
N
2
N
P
N
3
N
O
N
4
N
O
N
5
N
O
N
6
N
C
N
7
R
C
N
8
N
O
N
9
S
C
N
10
N
O
N
11
R
C
N
12
N
O
N
13
R
C
Y
14
N
N
Y
15
N
C
Y
16
N
N
Y
17
N
C
Y
18
N
C
N
19
N
N
Y
20
N
N
Y
21
N
C
Y
22
N
N
Y
23
N
C
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
O
N
39
N
P
N
40
N
O
N
41
N
O
N
42
N
O
N
43
N
C
N
44
R
C
N
45
N
O
N
46
S
C
N
47
N
O
N
48
R
C
N
49
N
O
N
50
R
C
N
51
N
N
N
52
N
C
N
53
N
O
N
54
N
N
N
55
N
C
N
56
N
N
N
57
N
C
N
58
N
C
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
O
N
74
N
P
N
75
N
O
N
76
N
O
N
77
N
O
N
78
N
C
N
79
R
C
N
80
N
O
N
81
S
C
N
82
N
O
N
83
R
C
N
84
N
O
N
85
R
C
Y
86
N
N
Y
87
N
C
Y
88
N
N
Y
89
N
C
N
90
N
C
N
91
N
O
N
92
N
N
N
93
N
C
N
94
N
N
N
95
N
N
Y
96
N
C
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
P
N
112
N
O
N
113
N
O
N
114
N
O
N
115
N
O
N
116
N
P
N
117
N
O
N
118
N
O
N
119
N
O
N
120
N
P
N
121
N
O
N
122
N
O
N
123
N
O
N
124
N
C
N
125
R
C
N
126
N
O
N
127
S
C
N
128
N
O
N
129
R
C
N
130
N
O
N
131
R
C
Y
132
N
N
Y
133
N
C
Y
134
N
N
Y
135
N
C
N
136
N
C
N
137
N
O
N
138
N
N
N
139
N
C
N
140
N
N
N
141
N
N
Y
142
N
C
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
O
N
160
N
H
N
161
N
H
N
162
N
MG
N
163
N
O
N
164
N
P
N
165
N
O
N
166
N
O
N
167
N
O
N
168
N
C
N
169
R
C
N
170
N
O
N
171
S
C
N
172
N
O
N
173
R
C
N
174
N
O
N
175
R
C
N
176
N
N
N
177
N
C
N
178
N
O
N
179
N
N
N
180
N
C
N
181
N
O
N
182
N
C
N
183
N
C
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
1
N
sing
N
2
N
sing
N
3
N
doub
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
Y
25
N
sing
Y
26
N
sing
Y
27
N
doub
N
28
N
sing
Y
29
N
sing
Y
30
N
sing
Y
31
N
doub
N
32
N
sing
Y
33
N
doub
N
34
N
sing
N
35
N
sing
Y
36
N
sing
Y
37
N
doub
N
38
N
sing
Y
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
doub
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
doub
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
doub
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
doub
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
Y
100
N
sing
Y
101
N
sing
Y
102
N
doub
N
103
N
sing
Y
104
N
sing
N
105
N
sing
Y
106
N
doub
N
107
N
doub
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
doub
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
doub
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
doub
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
Y
150
N
sing
Y
151
N
sing
Y
152
N
doub
N
153
N
sing
Y
154
N
sing
N
155
N
sing
Y
156
N
doub
N
157
N
doub
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
doub
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
doub
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
doub
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
doub
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
US
Proc.Natl.Acad.Sci.USA
PNASA6
0040
0027-8424
110
7240
7245
10.1073/pnas.1222214110
23589841
T box RNA decodes both the information content and geometry of tRNA to affect gene expression.
2013
10.2210/pdb4jrc/pdb
pdb_00004jrc
100
1
CCD
2012-07-01
ADSC QUANTUM 210
Horizontal focusing 5.05 asymmetric cut Si(111)
SINGLE WAVELENGTH
M
x-ray
1
0.9767
1.0
52864
0.231
3.58
3.500
35.000
5591
94.70
9.50
A1
CHESS
0.9767
SYNCHROTRON
CHESS BEAMLINE A1
18655.002
Distal Stem I region of the glyQS T box leader RNA
2
syn
polymer
24.305
MAGNESIUM ION
2
syn
non-polymer
18.015
water
25
nat
water
no
yes
(GTP)GAACCCUCUCUUCCGAAGCGAGCCGGGGGCGGUGGGAGCCCGGUGAAGACGGUUCC
GGAACCCUCUCUUCCGAAGCGAGCCGGGGGCGGUGGGAGCCCGGUGAAGACGGUUCC
A,B
polyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
1
2.80
56.14
VAPOR DIFFUSION, HANGING DROP
6.0
80mM NaCl, 12mM KCl, 20mM MgCl2, 40mM sodium cacodylate, 12mM spermine, 28% 2-methyl-1,3 propanediol, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 291K
291
-4.381
1
A
24
A
80
-24.488
A_GTP24:C80_A
1
-2.014
-0.474
-0.306
-0.162
-4.966
1
19
A
25
A
79
3.492
A_G25:C79_A
2
-8.866
-0.045
0.086
0.126
3.883
1
20
A
26
A
78
-5.640
A_A26:U78_A
3
-15.374
-0.063
0.329
-0.068
2.878
1
20
A
27
A
77
-2.448
A_A27:U77_A
4
-21.032
0.028
0.038
-0.051
0.253
1
A
28
A
76
11.051
A_C28:G76_A
5
-16.029
0.887
0.253
0.182
-4.397
1
19
A
29
A
75
3.521
A_C29:G75_A
6
-20.051
0.622
0.475
-0.112
4.815
1
20
A
73
A
33
2.090
A_A73:U33_A
7
-18.057
0.262
-0.400
0.137
-5.685
1
19
A
72
A
34
0.810
A_G72:C34_A
8
-20.746
-0.077
0.131
0.120
0.942
1
20
A
71
A
35
-2.338
A_A71:U35_A
9
-17.668
-0.042
0.215
0.278
1.616
1
20
A
70
A
36
-2.833
A_A70:U36_A
10
-21.410
-0.510
0.275
-0.066
-3.314
1
19
A
69
A
37
4.247
A_G69:C37_A
11
-15.403
-0.815
0.447
-0.030
5.946
1
28
A
46
A
68
-4.177
A_G46:U68_A
12
-18.480
-2.772
0.456
-0.546
10.422
1
19
A
47
A
67
1.333
A_C47:G67_A
13
-15.673
0.136
-0.268
-0.064
7.121
1
19
A
48
A
66
7.000
A_C48:G66_A
14
-2.893
-0.168
-0.150
0.051
0.977
1
19
A
49
A
65
1.474
A_G49:C65_A
15
-5.989
-0.351
-0.167
-0.156
-1.426
1
19
A
50
A
64
3.747
A_G50:C64_A
16
-2.344
-0.374
-0.312
-0.127
-9.800
1
19
A
51
A
63
-7.724
A_G51:C63_A
17
-8.357
0.354
-0.651
-0.333
4.513
4
5
A
41
A
45
-107.449
A_A41:A45_A
18
14.386
4.563
0.609
1.075
5.696
4
24
A
57
A
61
-90.358
A_U57:A61_A
19
14.002
4.067
0.342
-2.291
11.059
2
A
44
A
56
124.723
A_G44:G56_A
20
-13.758
-2.047
0.878
-1.863
-17.298
1
19
A
62
A
43
1.705
A_G62:C43_A
21
-21.267
-0.261
-0.230
-0.172
19.990
1
19
B
43
B
62
3.026
B_C43:G62_B
22
-23.686
0.146
-0.281
-0.123
11.993
2
B
44
B
56
125.104
B_G44:G56_B
23
-10.875
-2.043
0.925
-1.955
-2.988
4
24
B
61
B
57
-91.138
B_A61:U57_B
24
13.829
-4.236
0.338
-2.530
-8.235
4
5
B
45
B
41
-106.754
B_A45:A41_B
25
11.054
-4.217
0.630
1.094
-1.969
1
B
24
B
80
-14.987
B_GTP24:C80_B
26
4.593
-0.032
0.456
-0.051
-1.352
1
19
B
25
B
79
-0.766
B_G25:C79_B
27
-9.751
-0.895
0.343
0.070
-0.985
1
20
B
26
B
78
-10.370
B_A26:U78_B
28
-19.116
-1.014
0.054
-0.099
-1.708
1
20
B
27
B
77
-0.255
B_A27:U77_B
29
-17.986
0.103
0.111
0.273
6.277
B
28
B
76
3.427
B_C28:G76_B
30
-12.896
0.047
0.329
0.553
6.251
1
B
29
B
75
-12.974
B_C29:G75_B
31
-29.120
-0.432
-0.287
-0.031
-5.160
1
20
B
33
B
73
3.793
B_U33:A73_B
32
-16.735
0.002
0.124
0.075
5.138
1
19
B
34
B
72
3.444
B_C34:G72_B
33
-21.145
0.591
0.407
-0.124
2.889
B
35
B
71
6.204
B_U35:A71_B
34
-21.440
0.103
0.322
0.192
-0.580
1
20
B
36
B
70
-1.795
B_U36:A70_B
35
-24.858
0.365
0.057
-0.114
4.715
1
19
B
37
B
69
4.916
B_C37:G69_B
36
-19.023
0.125
0.262
0.192
0.744
1
28
B
46
B
68
-6.018
B_G46:U68_B
37
-18.271
-3.036
0.251
-0.725
9.718
1
19
B
47
B
67
4.121
B_C47:G67_B
38
-9.631
-0.435
-0.346
0.139
3.251
1
19
B
48
B
66
4.590
B_C48:G66_B
39
-5.181
-0.111
-0.429
0.098
-4.497
1
19
B
49
B
65
2.589
B_G49:C65_B
40
-2.432
0.080
0.029
-0.092
-3.122
1
19
B
50
B
64
1.123
B_G50:C64_B
41
-8.930
0.004
-0.281
-0.258
-11.974
1
19
B
51
B
63
-2.308
B_G51:C63_B
42
-10.660
0.857
-0.593
0.010
2.830
43.461
A
A
24
25
11.667
A
A
80
79
3.219
8.573
0.792
-1.252
AA_GTP24G25:C79C80_AA
1
-4.586
6.242
42.411
-2.468
-1.485
2.834
32.332
A
A
25
26
6.685
A
A
79
78
2.952
3.712
-0.635
-1.202
AA_G25A26:U78C79_AA
2
-2.195
3.953
32.051
-2.741
0.796
3.039
35.516
A
A
26
27
8.051
A
A
78
77
3.223
4.894
0.189
-1.202
AA_A26A27:U77U78_AA
3
2.186
-3.597
35.122
-2.659
-0.002
2.932
37.832
A
A
27
28
12.263
A
A
77
76
3.228
7.896
1.125
-1.236
AA_A27C28:G76U77_AA
4
0.674
-1.047
37.023
-2.873
-1.653
3.144
34.298
A
A
28
29
7.041
A
A
76
75
3.341
4.139
-0.082
-1.359
AA_C28C29:G75G76_AA
5
2.546
-4.332
33.962
-2.951
0.537
5.243
159.420
A
A
29
73
-71.960
A
A
75
33
-0.092
-128.026
-0.403
-6.239
AA_C29A73:U33G75_AA
6
-94.968
53.379
4.443
-1.149
-1.294
-2.602
-36.700
A
A
73
72
16.801
A
A
33
34
-3.082
-10.384
0.102
1.066
AA_A73G72:C34U33_AA
7
-6.733
-10.893
-34.618
-2.966
0.987
-2.939
-28.979
A
A
72
71
14.775
A
A
34
35
-3.425
-7.295
-0.842
1.866
AA_G72A71:U35C34_AA
8
-3.906
-7.912
-27.796
-5.331
-0.826
-3.046
-38.530
A
A
71
70
9.851
A
A
35
36
-3.282
-6.468
0.090
1.121
AA_A71A70:U36U35_AA
9
-2.506
-3.818
-37.924
-2.480
0.439
-2.660
-33.816
A
A
70
69
15.748
A
A
36
37
-3.072
-9.054
0.050
1.176
AA_A70G69:C37U36_AA
10
0.547
0.951
-32.611
-3.328
0.007
2.340
-177.119
A
A
69
46
-2.475
A
A
37
68
2.859
4.939
-1.903
2.889
AA_G69G46:U68C37_AA
11
-167.143
-83.735
-153.900
-1.454
-1.247
2.767
42.211
A
A
46
47
13.237
A
A
68
67
3.134
9.449
0.451
-1.498
AA_G46C47:G67U68_AA
12
3.568
-4.999
41.038
-2.969
-0.290
2.706
30.809
A
A
47
48
14.324
A
A
67
66
3.294
7.532
0.334
-1.962
AA_C47C48:G66G67_AA
13
-1.791
3.407
29.843
-5.063
-0.955
2.653
28.370
A
A
48
49
17.355
A
A
66
65
3.341
8.383
-0.559
-1.908
AA_C48G49:C65G66_AA
14
-0.494
1.023
27.123
-5.706
1.033
2.576
32.482
A
A
49
50
18.138
A
A
65
64
3.241
9.987
0.187
-1.686
AA_G49G50:C64C65_AA
15
-1.353
2.457
30.919
-4.612
-0.550
2.988
38.810
A
A
50
51
14.411
A
A
64
63
3.525
9.477
-0.528
-1.654
AA_G50G51:C63C64_AA
16
2.920
-4.440
37.569
-3.661
1.156
0.150
172.760
A
A
41
57
-79.178
A
A
45
61
1.278
-153.238
3.015
-1.403
AA_A41U57:A61A45_AA
17
-79.366
41.008
25.870
-0.197
-1.772
-1.897
-15.010
A
A
57
44
42.446
A
A
61
56
-3.261
-9.838
2.284
-0.801
AA_U57G44:G56A61_AA
18
-5.324
-22.968
-10.025
-4.669
12.929
-2.853
177.437
A
A
44
62
12.501
A
A
56
43
-1.962
24.867
-1.546
-3.993
AA_G44G62:C43G56_AA
19
174.301
-87.620
98.701
-1.871
-0.109
2.982
132.262
A
B
62
43
-3.952
A
B
43
62
2.879
-7.226
0.130
-3.735
AB_G62C43:G62C43_BA
20
-0.114
0.062
132.161
-1.997
-0.072
3.464
-16.412
B
B
43
44
-4.526
B
B
62
56
3.754
1.289
2.788
0.539
BB_C43G44:G56G62_BB
21
1.332
4.675
-16.308
-2.876
10.787
2.268
172.928
B
B
44
61
-9.563
B
B
56
57
2.345
-18.900
-0.121
-3.424
BB_G44A61:U57G56_BB
22
-165.363
83.667
117.009
-1.642
-0.583
0.306
173.627
B
B
61
45
-78.341
B
B
57
41
1.525
-152.744
-2.926
-1.306
BB_A61A45:A41U57_BB
23
81.698
-41.902
39.858
-0.087
1.768
3.121
32.486
B
B
24
25
6.025
B
B
80
79
3.329
3.363
0.622
-1.539
BB_GTP24G25:C79C80_BB
24
-1.680
3.010
32.273
-3.334
-1.403
3.295
31.553
B
B
25
26
1.084
B
B
79
78
3.320
0.589
-0.584
-1.618
BB_G25A26:U78C79_BB
25
-0.250
0.460
31.547
-3.086
1.027
2.955
41.542
B
B
26
27
10.460
B
B
78
77
3.225
7.383
0.217
-1.282
BB_A26A27:U77U78_BB
26
-0.741
1.051
40.903
-2.554
-0.380
2.668
32.086
B
B
27
28
11.005
B
B
77
76
2.965
6.047
0.408
-1.289
BB_A27C28:G76U77_BB
27
-0.757
1.377
31.517
-3.276
-0.856
2.744
32.097
B
B
28
29
6.146
B
B
76
75
3.102
3.366
-0.366
-1.873
BB_C28C29:G75G76_BB
28
7.036
-12.847
31.159
-3.937
1.809
3.748
114.022
B
B
29
33
4.908
B
B
75
73
4.470
8.206
-4.632
-0.985
BB_C29U33:A73G75_BB
29
23.573
-14.100
112.212
-0.704
3.095
2.473
37.623
B
B
33
34
15.307
B
B
73
72
2.899
9.751
0.265
-1.180
BB_U33C34:G72A73_BB
30
-3.671
5.762
36.201
-2.892
-0.811
3.002
25.123
B
B
34
35
9.899
B
B
72
71
3.345
4.285
-0.577
-1.839
BB_C34U35:A71G72_BB
31
-0.665
1.536
24.752
-5.462
1.134
2.862
37.814
B
B
35
36
14.725
B
B
71
70
3.238
9.448
-0.348
-1.191
BB_U35U36:A70A71_BB
32
-0.955
1.488
36.645
-2.991
0.421
2.536
33.355
B
B
36
37
20.478
B
B
70
69
3.076
11.525
0.064
-1.068
BB_U36C37:G69A70_BB
33
-0.038
0.067
31.354
-3.557
-0.118
-0.783
10.887
B
B
37
46
65.971
B
B
69
68
3.189
9.874
2.317
-2.636
BB_C37G46:U68G69_BB
34
1.644
-10.982
4.286
-22.143
-10.841
2.903
38.999
B
B
46
47
8.582
B
B
68
67
3.102
5.704
0.941
-1.660
BB_G46C47:G67U68_BB
35
3.247
-4.886
38.463
-3.124
-1.047
2.661
33.884
B
B
47
48
18.045
B
B
67
66
3.314
10.358
0.049
-1.690
BB_C47C48:G66G67_BB
36
-0.124
0.217
32.306
-4.459
-0.103
2.816
30.899
B
B
48
49
17.713
B
B
66
65
3.461
9.255
-0.575
-1.837
BB_C48G49:C65G66_BB
37
-5.108
9.776
29.076
-5.226
0.099
2.490
33.400
B
B
49
50
17.979
B
B
65
64
3.147
10.175
-0.308
-1.694
BB_G49G50:C64C65_BB
38
1.174
-2.074
31.833
-4.437
0.707
2.887
37.836
B
B
50
51
16.904
B
B
64
63
3.486
10.813
-0.108
-1.636
BB_G50G51:C63C64_BB
39
2.176
-3.403
36.249
-3.908
0.445
chem_comp_atom
chem_comp_bond
database_2
pdbx_struct_conn_angle
struct_conn
repository
Initial release
Database references
Database references
Data collection
Database references
Derived calculations
1
0
2013-04-24
1
1
2013-05-01
1
2
2013-05-22
1
3
2024-02-28
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_asym_id
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr2_auth_asym_id
_pdbx_struct_conn_angle.ptnr2_label_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_label_asym_id
RCSB
Y
RCSB
2013-03-21
REL
REL
0.132
21.162
99.10
6.90
0.135
9.995
100.00
8.90
0.145
5.707
99.70
10.10
0.187
4.019
100.00
11.40
0.211
3.737
100.00
11.50
0.269
3.251
100.00
11.80
0.306
2.632
100.00
12.00
0.342
2.097
100.00
12.10
0.373
1.912
100.00
11.70
0.369
1.849
100.00
11.40
0.423
1.627
100.00
10.60
0.413
1.667
99.70
9.90
0.239
1.726
99.00
9.10
0.349
1.790
96.40
8.40
0.478
1.590
95.40
7.70
0.459
1.286
89.90
7.10
0.394
1.381
85.30
7.00
0.444
1.327
81.20
6.70
0.541
1.264
75.10
6.10
0.497
1.181
72.20
5.70
MG
MAGNESIUM ION
HOH
water
Synthesized in vitro using T7 RNA polymerase from a plasmid template
sample
MG
2
2
MG
MG
101
A
MG
1
2
MG
MG
101
B
HOH
1
3
HOH
HOH
201
A
HOH
2
3
HOH
HOH
202
A
HOH
4
3
HOH
HOH
203
A
HOH
5
3
HOH
HOH
204
A
HOH
7
3
HOH
HOH
205
A
HOH
11
3
HOH
HOH
206
A
HOH
12
3
HOH
HOH
207
A
HOH
13
3
HOH
HOH
208
A
HOH
18
3
HOH
HOH
209
A
HOH
20
3
HOH
HOH
210
A
HOH
24
3
HOH
HOH
211
A
HOH
25
3
HOH
HOH
212
A
HOH
26
3
HOH
HOH
213
A
HOH
3
3
HOH
HOH
201
B
HOH
6
3
HOH
HOH
202
B
HOH
8
3
HOH
HOH
203
B
HOH
9
3
HOH
HOH
204
B
HOH
10
3
HOH
HOH
205
B
HOH
14
3
HOH
HOH
206
B
HOH
16
3
HOH
HOH
207
B
HOH
19
3
HOH
HOH
208
B
HOH
21
3
HOH
HOH
209
B
HOH
22
3
HOH
HOH
210
B
HOH
23
3
HOH
HOH
211
B
HOH
27
3
HOH
HOH
212
B
0.770
0.780
0.710
5022
4428
594
0.760
0.750
0.870
855
791
64
0.810
0.840
0.670
709
586
123
0.790
0.800
0.750
852
744
108
0.760
0.770
0.680
861
761
100
0.760
0.770
0.740
1517
1381
136
GTP
24
n
1
GTP
24
A
G
25
n
2
G
25
A
A
26
n
3
A
26
A
A
27
n
4
A
27
A
C
28
n
5
C
28
A
C
29
n
6
C
29
A
C
30
n
7
C
30
A
U
31
n
8
U
31
A
C
32
n
9
C
32
A
U
33
n
10
U
33
A
C
34
n
11
C
34
A
U
35
n
12
U
35
A
U
36
n
13
U
36
A
C
37
n
14
C
37
A
C
38
n
15
C
38
A
G
39
n
16
G
39
A
A
40
n
17
A
40
A
A
41
n
18
A
41
A
G
42
n
19
G
42
A
C
43
n
20
C
43
A
G
44
n
21
G
44
A
A
45
n
22
A
45
A
G
46
n
23
G
46
A
C
47
n
24
C
47
A
C
48
n
25
C
48
A
G
49
n
26
G
49
A
G
50
n
27
G
50
A
G
51
n
28
G
51
A
G
52
n
29
G
52
A
G
53
n
30
G
53
A
C
54
n
31
C
54
A
G
55
n
32
G
55
A
G
56
n
33
G
56
A
U
57
n
34
U
57
A
G
58
n
35
G
58
A
G
59
n
36
G
59
A
G
60
n
37
G
60
A
A
61
n
38
A
61
A
G
62
n
39
G
62
A
C
63
n
40
C
63
A
C
64
n
41
C
64
A
C
65
n
42
C
65
A
G
66
n
43
G
66
A
G
67
n
44
G
67
A
U
68
n
45
U
68
A
G
69
n
46
G
69
A
A
70
n
47
A
70
A
A
71
n
48
A
71
A
G
72
n
49
G
72
A
A
73
n
50
A
73
A
C
74
n
51
C
74
A
G
75
n
52
G
75
A
G
76
n
53
G
76
A
U
77
n
54
U
77
A
U
78
n
55
U
78
A
C
79
n
56
C
79
A
C
80
n
57
C
80
A
GTP
24
n
1
GTP
24
B
G
25
n
2
G
25
B
A
26
n
3
A
26
B
A
27
n
4
A
27
B
C
28
n
5
C
28
B
C
29
n
6
C
29
B
C
30
n
7
C
30
B
U
31
n
8
U
31
B
C
32
n
9
C
32
B
U
33
n
10
U
33
B
C
34
n
11
C
34
B
U
35
n
12
U
35
B
U
36
n
13
U
36
B
C
37
n
14
C
37
B
C
38
n
15
C
38
B
G
39
n
16
G
39
B
A
40
n
17
A
40
B
A
41
n
18
A
41
B
G
42
n
19
G
42
B
C
43
n
20
C
43
B
G
44
n
21
G
44
B
A
45
n
22
A
45
B
G
46
n
23
G
46
B
C
47
n
24
C
47
B
C
48
n
25
C
48
B
G
49
n
26
G
49
B
G
50
n
27
G
50
B
G
51
n
28
G
51
B
G
52
n
29
G
52
B
G
53
n
30
G
53
B
C
54
n
31
C
54
B
G
55
n
32
G
55
B
G
56
n
33
G
56
B
U
57
n
34
U
57
B
G
58
n
35
G
58
B
G
59
n
36
G
59
B
G
60
n
37
G
60
B
A
61
n
38
A
61
B
G
62
n
39
G
62
B
C
63
n
40
C
63
B
C
64
n
41
C
64
B
C
65
n
42
C
65
B
G
66
n
43
G
66
B
G
67
n
44
G
67
B
U
68
n
45
U
68
B
G
69
n
46
G
69
B
A
70
n
47
A
70
B
A
71
n
48
A
71
B
G
72
n
49
G
72
B
A
73
n
50
A
73
B
C
74
n
51
C
74
B
G
75
n
52
G
75
B
G
76
n
53
G
76
B
U
77
n
54
U
77
B
U
78
n
55
U
78
B
C
79
n
56
C
79
B
C
80
n
57
C
80
B
1.1106
1.0520
-0.1352
0.8831
-0.7675
1.5182
-0.7386
1.4023
0.3415
-0.5280
-0.0318
0.1217
-0.6032
-0.4585
0.5808
1.2493
0.0238
-0.3625
1.4765
-0.1706
0.6877
refined
16.6610
49.9943
-8.7180
X-RAY DIFFRACTION
3.6283
0.2261
1.1720
5.3467
-1.2178
0.9388
-0.1027
0.2973
0.1901
0.1058
0.0199
0.1957
-0.1163
0.0397
0.0959
0.6234
0.0244
-0.1886
0.3289
-0.0663
0.4647
refined
14.6338
45.6602
12.1494
X-RAY DIFFRACTION
4.8434
1.5956
-2.3259
4.7993
2.1744
4.5734
-0.8383
0.9265
0.8614
-0.6443
1.2420
0.3721
0.0950
-0.7815
0.2788
1.4041
0.0416
-0.5583
1.6596
-0.0917
0.7231
refined
10.8361
50.0262
-21.7703
X-RAY DIFFRACTION
3.0535
-0.0068
0.9871
2.9871
-0.5061
0.3890
-0.6597
-0.0276
-0.1546
-0.1952
0.5633
0.0058
-0.3010
1.5212
0.0341
1.4957
-0.3037
0.0132
2.0283
-0.0993
0.5490
refined
36.7448
15.2994
50.0423
X-RAY DIFFRACTION
1.7832
0.9028
-1.7381
2.6998
-2.9547
3.5887
0.3214
-0.7736
-0.1093
0.6981
-0.1749
-0.0449
-0.7013
0.7871
0.0030
0.9211
-0.0804
-0.0975
0.6205
-0.0009
0.4858
refined
28.4895
19.4721
29.9598
X-RAY DIFFRACTION
2.2348
-1.7207
0.1968
5.8040
-2.4489
2.5524
-0.0504
-0.2493
-0.1786
0.5593
0.2031
0.2963
0.0353
-0.3017
-0.1244
0.7165
-0.0672
-0.1304
0.3402
-0.0057
0.3874
refined
16.5223
23.2008
23.2747
X-RAY DIFFRACTION
2.1831
-0.4185
2.3671
2.5398
-0.2610
2.6442
-0.0412
-1.1809
0.0334
0.9528
0.3591
0.0320
-0.4755
1.0078
-0.0006
1.4719
-0.3737
-0.2032
1.6357
-0.0498
0.4283
refined
34.2646
15.3918
47.7990
X-RAY DIFFRACTION
A
0
A
0
X-RAY DIFFRACTION
1
chain 'A' and (resid 24 through 40 )
A
0
A
0
X-RAY DIFFRACTION
2
chain 'A' and (resid 41 through 73 )
A
0
A
0
X-RAY DIFFRACTION
3
chain 'A' and (resid 74 through 80 )
B
0
B
0
X-RAY DIFFRACTION
4
chain 'B' and (resid 24 through 32 )
B
0
B
0
X-RAY DIFFRACTION
5
chain 'B' and (resid 33 through 40 )
B
0
B
0
X-RAY DIFFRACTION
6
chain 'B' and (resid 41 through 68 )
B
0
B
0
X-RAY DIFFRACTION
7
chain 'B' and (resid 69 through 80 )
author_and_software_defined_assembly
PISA
1
monomeric
author_and_software_defined_assembly
PISA
1
monomeric
A
A
40
A
OP2
A
17
1_555
A
MG
101
C
MG
MG
1_555
A
G
42
A
O6
G
19
1_555
161.4
B
A
40
B
OP2
A
17
1_555
B
MG
101
D
MG
MG
1_555
B
G
42
B
O6
G
19
1_555
156.7
B
A
40
B
OP2
A
17
1_555
B
MG
101
D
MG
MG
1_555
B
HOH
210
F
O
HOH
1_555
87.2
B
G
42
B
O6
G
19
1_555
B
MG
101
D
MG
MG
1_555
B
HOH
210
F
O
HOH
1_555
71.3
A
GTP
24
GUANOSINE-5'-TRIPHOSPHATE
A
GTP
1
G
B
GTP
24
GUANOSINE-5'-TRIPHOSPHATE
B
GTP
1
G
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
12.89
1.10
110.50
123.39
B
B
B
O3'
P
OP1
GTP
G
G
24
25
25
Y
205.220
81.9439
33.850
0.2427
0.2010
0.2051
2.6730
20.1400
1151
11484
10.0200
95.7100
1.000
1.000
0.7754
0.3900
1
1.350
SAD
28.4400
0.9000
1.1100
ML
FLAT BULK SOLVENT MODEL
2.6730
20.1400
25
2499
2
2472
0
0.001
2762
0.409
4308
0.019
568
0.002
114
11.385
1366
0.3642
0.3358
2.7945
118
1054
1172
8
79.0000
0.3948
0.3220
2.9414
139
1257
1396
8
93.0000
0.3302
0.2628
3.1251
145
1304
1449
8
99.0000
0.2522
0.2216
3.3654
144
1304
1448
8
98.0000
0.2475
0.1883
3.7022
148
1310
1458
8
97.0000
0.2074
0.1636
4.2335
151
1347
1498
8
100.0000
0.2261
0.1738
5.3175
151
1364
1515
8
100.0000
0.1969
0.1767
20.1403
155
1393
1548
8
99.0000
48.89
2.650
35.000
4JRC
11578
-3
0.068
1
10.900
3.6
97.200
0.484
2.650
2.700
1.808
473
1
3.100
82.700
0.482
2.700
2.740
1.931
529
1
3.100
85.600
0.418
2.740
2.800
2.041
508
1
3.300
90.100
0.323
2.800
2.850
3.086
534
1
3.400
94.200
0.305
2.850
2.920
3.507
615
1
3.400
97.500
0.218
2.920
2.980
5.286
571
1
3.600
99.100
0.212
2.980
3.060
5.942
572
1
3.600
100.000
0.140
3.060
3.140
9.822
588
1
3.600
100.000
0.113
3.140
3.230
12.164
605
1
3.700
100.000
0.103
3.230
3.340
16.639
589
1
3.700
99.700
0.085
3.340
3.460
24.870
600
1
3.700
99.500
0.086
3.460
3.600
15.507
578
1
3.700
100.000
0.067
3.600
3.760
20.645
598
1
3.700
99.800
0.058
3.760
3.960
23.083
585
1
3.700
99.800
0.051
3.960
4.200
27.945
596
1
3.600
100.000
0.050
4.200
4.530
27.776
593
1
3.700
100.000
0.045
4.530
4.980
30.338
619
1
3.700
100.000
0.033
4.980
5.700
36.380
596
1
3.600
99.700
0.033
5.700
7.170
37.338
612
1
3.600
99.700
0.026
7.170
35.000
47.560
617
1
3.400
96.300
data reduction
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
DENZO
program
data scaling
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
SCALEPACK
program
phasing
Tom Terwilliger
terwilliger@LANL.gov
http://www.solve.lanl.gov/
SOLVE
program
phasing
Thomas C. Terwilliger
terwilliger@lanl.gov
20-Mar-2010
http://www.solve.lanl.gov/
RESOLVE
program
2.15
refinement
Paul D. Adams
PDAdams@lbl.gov
C++
http://www.phenix-online.org/
PHENIX
package
1.8.1_1168
data extraction
PDB
deposit@deposit.rcsb.org
April 22, 2011
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.11
data collection
HKL-2000
data reduction
HKL-2000
data scaling
HKL-2000
Distal Stem I region from G. kaustophilus glyQS T box RNA
1
N
N
1
N
N
2
N
N
2
N
N
3
N
N
3
N
N
covale
1.591
both
A
GTP
24
A
O3'
GTP
1
1_555
A
G
25
A
P
G
2
1_555
covale
1.591
both
B
GTP
24
B
O3'
GTP
1
1_555
B
G
25
B
P
G
2
1_555
metalc
2.320
A
A
40
A
OP2
A
17
1_555
A
MG
101
C
MG
MG
1_555
metalc
2.111
A
G
42
A
O6
G
19
1_555
A
MG
101
C
MG
MG
1_555
metalc
2.364
B
A
40
B
OP2
A
17
1_555
B
MG
101
D
MG
MG
1_555
metalc
2.079
B
G
42
B
O6
G
19
1_555
B
MG
101
D
MG
MG
1_555
metalc
2.628
B
MG
101
D
MG
MG
1_555
B
HOH
210
F
O
HOH
1_555
hydrog
GTP-C PAIR
A
GTP
24
A
N1
GTP
1
1_555
A
C
80
A
N3
C
57
1_555
hydrog
WATSON-CRICK
A
G
25
A
N1
G
2
1_555
A
C
79
A
N3
C
56
1_555
hydrog
WATSON-CRICK
A
G
25
A
N2
G
2
1_555
A
C
79
A
O2
C
56
1_555
hydrog
WATSON-CRICK
A
G
25
A
O6
G
2
1_555
A
C
79
A
N4
C
56
1_555
hydrog
WATSON-CRICK
A
A
26
A
N1
A
3
1_555
A
U
78
A
N3
U
55
1_555
hydrog
WATSON-CRICK
A
A
26
A
N6
A
3
1_555
A
U
78
A
O4
U
55
1_555
hydrog
WATSON-CRICK
A
A
27
A
N1
A
4
1_555
A
U
77
A
N3
U
54
1_555
hydrog
WATSON-CRICK
A
A
27
A
N6
A
4
1_555
A
U
77
A
O4
U
54
1_555
hydrog
C-G PAIR
A
C
28
A
O2
C
5
1_555
A
G
76
A
N1
G
53
1_555
hydrog
WATSON-CRICK
A
C
29
A
N3
C
6
1_555
A
G
75
A
N1
G
52
1_555
hydrog
WATSON-CRICK
A
C
29
A
N4
C
6
1_555
A
G
75
A
O6
G
52
1_555
hydrog
WATSON-CRICK
A
C
29
A
O2
C
6
1_555
A
G
75
A
N2
G
52
1_555
hydrog
C-A MISPAIR
A
C
30
A
O2
C
7
1_555
A
A
73
A
N6
A
50
1_555
hydrog
U-G MISPAIR
A
U
31
A
O4
U
8
1_555
A
G
75
A
N2
G
52
1_555
hydrog
C-G PAIR
A
C
32
A
N4
C
9
1_555
A
G
75
A
N3
G
52
1_555
hydrog
WATSON-CRICK
A
U
33
A
N3
U
10
1_555
A
A
73
A
N1
A
50
1_555
hydrog
WATSON-CRICK
A
U
33
A
O4
U
10
1_555
A
A
73
A
N6
A
50
1_555
hydrog
WATSON-CRICK
A
C
34
A
N3
C
11
1_555
A
G
72
A
N1
G
49
1_555
hydrog
WATSON-CRICK
A
C
34
A
N4
C
11
1_555
A
G
72
A
O6
G
49
1_555
hydrog
WATSON-CRICK
A
C
34
A
O2
C
11
1_555
A
G
72
A
N2
G
49
1_555
hydrog
WATSON-CRICK
A
U
35
A
N3
U
12
1_555
A
A
71
A
N1
A
48
1_555
hydrog
WATSON-CRICK
A
U
35
A
O4
U
12
1_555
A
A
71
A
N6
A
48
1_555
hydrog
WATSON-CRICK
A
U
36
A
N3
U
13
1_555
A
A
70
A
N1
A
47
1_555
hydrog
WATSON-CRICK
A
U
36
A
O4
U
13
1_555
A
A
70
A
N6
A
47
1_555
hydrog
WATSON-CRICK
A
C
37
A
N3
C
14
1_555
A
G
69
A
N1
G
46
1_555
hydrog
WATSON-CRICK
A
C
37
A
N4
C
14
1_555
A
G
69
A
O6
G
46
1_555
hydrog
WATSON-CRICK
A
C
37
A
O2
C
14
1_555
A
G
69
A
N2
G
46
1_555
hydrog
TYPE_5_PAIR
A
A
41
A
N1
A
18
1_555
A
A
45
A
N6
A
22
1_555
hydrog
TYPE_5_PAIR
A
A
41
A
N6
A
18
1_555
A
A
45
A
N7
A
22
1_555
hydrog
G-A MISPAIR
A
G
42
A
N2
G
19
1_555
A
A
61
A
N1
A
38
1_555
hydrog
C-G PAIR
A
C
43
A
N4
C
20
1_555
A
G
55
A
O6
G
32
1_555
hydrog
WATSON-CRICK
A
C
43
A
N3
C
20
1_555
A
G
62
A
N1
G
39
1_555
hydrog
WATSON-CRICK
A
C
43
A
N4
C
20
1_555
A
G
62
A
O6
G
39
1_555
hydrog
WATSON-CRICK
A
C
43
A
O2
C
20
1_555
A
G
62
A
N2
G
39
1_555
hydrog
G-G MISPAIR
A
G
44
A
O6
G
21
1_555
A
G
56
A
N1
G
33
1_555
hydrog
TYPE_10_PAIR
A
A
45
A
N1
A
22
1_555
A
G
58
A
N2
G
35
1_555
hydrog
TYPE_10_PAIR
A
A
45
A
N6
A
22
1_555
A
G
58
A
N3
G
35
1_555
hydrog
TYPE_28_PAIR
A
G
46
A
N1
G
23
1_555
A
U
68
A
O2
U
45
1_555
hydrog
TYPE_28_PAIR
A
G
46
A
O6
G
23
1_555
A
U
68
A
N3
U
45
1_555
hydrog
WATSON-CRICK
A
C
47
A
N3
C
24
1_555
A
G
67
A
N1
G
44
1_555
hydrog
WATSON-CRICK
A
C
47
A
N4
C
24
1_555
A
G
67
A
O6
G
44
1_555
hydrog
WATSON-CRICK
A
C
47
A
O2
C
24
1_555
A
G
67
A
N2
G
44
1_555
hydrog
WATSON-CRICK
A
C
48
A
N3
C
25
1_555
A
G
66
A
N1
G
43
1_555
hydrog
WATSON-CRICK
A
C
48
A
N4
C
25
1_555
A
G
66
A
O6
G
43
1_555
hydrog
WATSON-CRICK
A
C
48
A
O2
C
25
1_555
A
G
66
A
N2
G
43
1_555
hydrog
WATSON-CRICK
A
G
49
A
N1
G
26
1_555
A
C
65
A
N3
C
42
1_555
hydrog
WATSON-CRICK
A
G
49
A
N2
G
26
1_555
A
C
65
A
O2
C
42
1_555
hydrog
WATSON-CRICK
A
G
49
A
O6
G
26
1_555
A
C
65
A
N4
C
42
1_555
hydrog
WATSON-CRICK
A
G
50
A
N1
G
27
1_555
A
C
64
A
N3
C
41
1_555
hydrog
WATSON-CRICK
A
G
50
A
N2
G
27
1_555
A
C
64
A
O2
C
41
1_555
hydrog
WATSON-CRICK
A
G
50
A
O6
G
27
1_555
A
C
64
A
N4
C
41
1_555
hydrog
WATSON-CRICK
A
G
51
A
N1
G
28
1_555
A
C
63
A
N3
C
40
1_555
hydrog
WATSON-CRICK
A
G
51
A
N2
G
28
1_555
A
C
63
A
O2
C
40
1_555
hydrog
WATSON-CRICK
A
G
51
A
O6
G
28
1_555
A
C
63
A
N4
C
40
1_555
hydrog
REVERSED HOOGSTEEN
A
U
57
A
N3
U
34
1_555
A
A
61
A
N7
A
38
1_555
hydrog
REVERSED HOOGSTEEN
A
U
57
A
O2
U
34
1_555
A
A
61
A
N6
A
38
1_555
hydrog
GTP-C PAIR
B
GTP
24
B
N1
GTP
1
1_555
B
C
80
B
N3
C
57
1_555
hydrog
WATSON-CRICK
B
G
25
B
N1
G
2
1_555
B
C
79
B
N3
C
56
1_555
hydrog
WATSON-CRICK
B
G
25
B
N2
G
2
1_555
B
C
79
B
O2
C
56
1_555
hydrog
WATSON-CRICK
B
G
25
B
O6
G
2
1_555
B
C
79
B
N4
C
56
1_555
hydrog
WATSON-CRICK
B
A
26
B
N1
A
3
1_555
B
U
78
B
N3
U
55
1_555
hydrog
WATSON-CRICK
B
A
26
B
N6
A
3
1_555
B
U
78
B
O4
U
55
1_555
hydrog
WATSON-CRICK
B
A
27
B
N1
A
4
1_555
B
U
77
B
N3
U
54
1_555
hydrog
WATSON-CRICK
B
A
27
B
N6
A
4
1_555
B
U
77
B
O4
U
54
1_555
hydrog
C-G PAIR
B
C
28
B
O2
C
5
1_555
B
G
76
B
N2
G
53
1_555
hydrog
C-G PAIR
B
C
29
B
N4
C
6
1_555
B
G
75
B
O6
G
52
1_555
hydrog
C-C MISPAIR
B
C
30
B
O2
C
7
1_555
B
C
32
B
N4
C
9
1_555
hydrog
TYPE_25_PAIR
B
C
30
B
N3
C
7
1_555
B
A
73
B
N6
A
50
1_555
hydrog
TYPE_25_PAIR
B
C
30
B
N4
C
7
1_555
B
A
73
B
N7
A
50
1_555
hydrog
U-G MISPAIR
B
U
31
B
O4
U
8
1_555
B
G
75
B
N2
G
52
1_555
hydrog
C-G PAIR
B
C
32
B
N4
C
9
1_555
B
G
75
B
N3
G
52
1_555
hydrog
WATSON-CRICK
B
U
33
B
N3
U
10
1_555
B
A
73
B
N1
A
50
1_555
hydrog
WATSON-CRICK
B
U
33
B
O4
U
10
1_555
B
A
73
B
N6
A
50
1_555
hydrog
WATSON-CRICK
B
C
34
B
N3
C
11
1_555
B
G
72
B
N1
G
49
1_555
hydrog
WATSON-CRICK
B
C
34
B
N4
C
11
1_555
B
G
72
B
O6
G
49
1_555
hydrog
WATSON-CRICK
B
C
34
B
O2
C
11
1_555
B
G
72
B
N2
G
49
1_555
hydrog
U-A PAIR
B
U
35
B
N3
U
12
1_555
B
A
71
B
N1
A
48
1_555
hydrog
WATSON-CRICK
B
U
36
B
N3
U
13
1_555
B
A
70
B
N1
A
47
1_555
hydrog
WATSON-CRICK
B
U
36
B
O4
U
13
1_555
B
A
70
B
N6
A
47
1_555
hydrog
WATSON-CRICK
B
C
37
B
N3
C
14
1_555
B
G
69
B
N1
G
46
1_555
hydrog
WATSON-CRICK
B
C
37
B
N4
C
14
1_555
B
G
69
B
O6
G
46
1_555
hydrog
WATSON-CRICK
B
C
37
B
O2
C
14
1_555
B
G
69
B
N2
G
46
1_555
hydrog
TYPE_5_PAIR
B
A
41
B
N1
A
18
1_555
B
A
45
B
N6
A
22
1_555
hydrog
TYPE_5_PAIR
B
A
41
B
N6
A
18
1_555
B
A
45
B
N7
A
22
1_555
hydrog
TYPE_10_PAIR
B
G
42
B
N2
G
19
1_555
B
A
61
B
N1
A
38
1_555
hydrog
TYPE_10_PAIR
B
G
42
B
N3
G
19
1_555
B
A
61
B
N6
A
38
1_555
hydrog
C-G PAIR
B
C
43
B
N4
C
20
1_555
B
G
55
B
O6
G
32
1_555
hydrog
WATSON-CRICK
B
C
43
B
N3
C
20
1_555
B
G
62
B
N1
G
39
1_555
hydrog
WATSON-CRICK
B
C
43
B
N4
C
20
1_555
B
G
62
B
O6
G
39
1_555
hydrog
WATSON-CRICK
B
C
43
B
O2
C
20
1_555
B
G
62
B
N2
G
39
1_555
hydrog
G-G MISPAIR
B
G
44
B
O6
G
21
1_555
B
G
56
B
N1
G
33
1_555
hydrog
A-G MISPAIR
B
A
45
B
N1
A
22
1_555
B
G
58
B
N2
G
35
1_555
hydrog
TYPE_28_PAIR
B
G
46
B
N1
G
23
1_555
B
U
68
B
O2
U
45
1_555
hydrog
TYPE_28_PAIR
B
G
46
B
O6
G
23
1_555
B
U
68
B
N3
U
45
1_555
hydrog
WATSON-CRICK
B
C
47
B
N3
C
24
1_555
B
G
67
B
N1
G
44
1_555
hydrog
WATSON-CRICK
B
C
47
B
N4
C
24
1_555
B
G
67
B
O6
G
44
1_555
hydrog
WATSON-CRICK
B
C
47
B
O2
C
24
1_555
B
G
67
B
N2
G
44
1_555
hydrog
WATSON-CRICK
B
C
48
B
N3
C
25
1_555
B
G
66
B
N1
G
43
1_555
hydrog
WATSON-CRICK
B
C
48
B
N4
C
25
1_555
B
G
66
B
O6
G
43
1_555
hydrog
WATSON-CRICK
B
C
48
B
O2
C
25
1_555
B
G
66
B
N2
G
43
1_555
hydrog
WATSON-CRICK
B
G
49
B
N1
G
26
1_555
B
C
65
B
N3
C
42
1_555
hydrog
WATSON-CRICK
B
G
49
B
N2
G
26
1_555
B
C
65
B
O2
C
42
1_555
hydrog
WATSON-CRICK
B
G
49
B
O6
G
26
1_555
B
C
65
B
N4
C
42
1_555
hydrog
WATSON-CRICK
B
G
50
B
N1
G
27
1_555
B
C
64
B
N3
C
41
1_555
hydrog
WATSON-CRICK
B
G
50
B
N2
G
27
1_555
B
C
64
B
O2
C
41
1_555
hydrog
WATSON-CRICK
B
G
50
B
O6
G
27
1_555
B
C
64
B
N4
C
41
1_555
hydrog
WATSON-CRICK
B
G
51
B
N1
G
28
1_555
B
C
63
B
N3
C
40
1_555
hydrog
WATSON-CRICK
B
G
51
B
N2
G
28
1_555
B
C
63
B
O2
C
40
1_555
hydrog
WATSON-CRICK
B
G
51
B
O6
G
28
1_555
B
C
63
B
N4
C
40
1_555
hydrog
REVERSED HOOGSTEEN
B
U
57
B
N3
U
34
1_555
B
A
61
B
N7
A
38
1_555
hydrog
REVERSED HOOGSTEEN
B
U
57
B
O2
U
34
1_555
B
A
61
B
N6
A
38
1_555
RNA
T box RNA, Regulatory RNA leader sequence, tRNA binding, RNA
4JRC
PDB
1
4JRC
GGAACCCUCUCUUCCGAAGCGAGCCGGGGGCGGUGGGAGCCCGGUGAAGACGGUUCC
24
80
4JRC
24
80
4JRC
A
1
1
57
24
80
4JRC
24
80
4JRC
B
1
1
57
Software
2
Software
3
A
A
40
A
A
17
2
1_555
A
G
42
A
G
19
2
1_555
B
A
40
B
A
17
3
1_555
B
G
42
B
G
19
3
1_555
B
HOH
210
F
HOH
3
1_555
5
C 1 2 1