0.022072 0.000000 0.000000 0.000000 0.014974 0.000000 0.000000 0.000000 0.008365 0.00000 0.00000 0.00000 Das, U. Wang, L.K. Smith, P. Shuman, S. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 45.306 66.781 119.546 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C9 H16 N3 O14 P3 483.156 CYTIDINE-5'-TRIPHOSPHATE non-polymer C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking Mg 2 24.305 MAGNESIUM ION non-polymer C5 H11 N O2 Se 196.106 n SELENOMETHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US Biochemistry BICHAW 0033 0006-2960 52 4734 4743 10.1021/bi400412x 23721485 Structural and biochemical analysis of the phosphate donor specificity of the polynucleotide kinase component of the bacterial pnkphen1 RNA repair system. 2013 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 130 1 PIXEL 2012-09-26 DECTRIS PILATUS 6M SINGLE WAVELENGTH M x-ray 1 1.1 1.0 X25 NSLS 1.1 SYNCHROTRON NSLS BEAMLINE X25 19661.062 Metallophosphoesterase 2.7.1.78 V44M, L137M 2 man polymer 24.305 MAGNESIUM ION 2 syn non-polymer 483.156 CYTIDINE-5'-TRIPHOSPHATE 2 syn non-polymer 18.015 water 126 nat water no yes S(MSE)KLTIPELSLVVLIGSSGSGKSTFAKKHFKPTEVISSDFCRGL(MSE)SDDENDQTVTGAAFDVLHYIVSKRLQL GKLTVVDATNVQESARKPLIEIAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQ(MSE)KKSIKGLQRE GFRYVYILNSPEEVEEVVFERQP SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPTEVISSDFCRGLMSDDENDQTVTGAAFDVLHYIVSKRLQLGKLTVVDA TNVQESARKPLIEIAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPE EVEEVVFERQP A,B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n ATCC 27405 / DSM 1237 sample Cthe_2768 203119 Clostridium thermocellum 562 Escherichia coli 1 2.30 46.51 VAPOR DIFFUSION, HANGING DROP 5.6 100mM sodium citrate, 100mM MgCl2, 16-18% PEG 3350, 2mM CTP, pH 5.6, VAPOR DIFFUSION, HANGING DROP, temperature 298K 298 repository Initial release Database references 1 0 2013-08-28 1 1 2013-12-18 Same protein complexed with ATP Same protein complexed with ADP RCSB Y RCSB 2013-03-22 REL REL MG MAGNESIUM ION CTP CYTIDINE-5'-TRIPHOSPHATE HOH water MG 1002 2 MG MG 201 A CTP 1001 3 CTP CTP 202 A CTP 1001 3 CTP CTP 1001 B MG 1002 2 MG MG 1002 B HOH 2 4 HOH HOH 301 A HOH 5 4 HOH HOH 302 A HOH 6 4 HOH HOH 303 A HOH 9 4 HOH HOH 304 A HOH 11 4 HOH HOH 305 A HOH 12 4 HOH HOH 306 A HOH 13 4 HOH HOH 307 A HOH 14 4 HOH HOH 308 A HOH 15 4 HOH HOH 309 A HOH 17 4 HOH HOH 310 A HOH 18 4 HOH HOH 311 A HOH 19 4 HOH HOH 312 A HOH 22 4 HOH HOH 313 A HOH 24 4 HOH HOH 314 A HOH 25 4 HOH HOH 315 A HOH 26 4 HOH HOH 316 A HOH 27 4 HOH HOH 317 A HOH 28 4 HOH HOH 318 A HOH 29 4 HOH HOH 319 A HOH 30 4 HOH HOH 320 A HOH 35 4 HOH HOH 321 A HOH 39 4 HOH HOH 322 A HOH 40 4 HOH HOH 323 A HOH 41 4 HOH HOH 324 A HOH 42 4 HOH HOH 325 A HOH 43 4 HOH HOH 326 A HOH 47 4 HOH HOH 327 A HOH 49 4 HOH HOH 328 A HOH 50 4 HOH HOH 329 A HOH 51 4 HOH HOH 330 A HOH 52 4 HOH HOH 331 A HOH 54 4 HOH HOH 332 A HOH 55 4 HOH HOH 333 A HOH 56 4 HOH HOH 334 A HOH 58 4 HOH HOH 335 A HOH 62 4 HOH HOH 336 A HOH 63 4 HOH HOH 337 A HOH 66 4 HOH HOH 338 A HOH 67 4 HOH HOH 339 A HOH 69 4 HOH HOH 340 A HOH 71 4 HOH HOH 341 A HOH 76 4 HOH HOH 342 A HOH 77 4 HOH HOH 343 A HOH 80 4 HOH HOH 344 A HOH 81 4 HOH HOH 345 A HOH 82 4 HOH HOH 346 A HOH 83 4 HOH HOH 347 A HOH 86 4 HOH HOH 348 A HOH 88 4 HOH HOH 349 A HOH 91 4 HOH HOH 350 A HOH 94 4 HOH HOH 351 A HOH 97 4 HOH HOH 352 A HOH 102 4 HOH HOH 353 A HOH 103 4 HOH HOH 354 A HOH 105 4 HOH HOH 355 A HOH 107 4 HOH HOH 356 A HOH 109 4 HOH HOH 357 A HOH 110 4 HOH HOH 358 A HOH 112 4 HOH HOH 359 A HOH 116 4 HOH HOH 360 A HOH 117 4 HOH HOH 361 A HOH 121 4 HOH HOH 362 A HOH 122 4 HOH HOH 363 A HOH 123 4 HOH HOH 364 A HOH 125 4 HOH HOH 365 A HOH 126 4 HOH HOH 366 A HOH 1 4 HOH HOH 1101 B HOH 3 4 HOH HOH 1102 B HOH 4 4 HOH HOH 1103 B HOH 7 4 HOH HOH 1104 B HOH 8 4 HOH HOH 1105 B HOH 10 4 HOH HOH 1106 B HOH 16 4 HOH HOH 1107 B HOH 20 4 HOH HOH 1108 B HOH 21 4 HOH HOH 1109 B HOH 23 4 HOH HOH 1110 B HOH 31 4 HOH HOH 1111 B HOH 32 4 HOH HOH 1112 B HOH 33 4 HOH HOH 1113 B HOH 34 4 HOH HOH 1114 B HOH 36 4 HOH HOH 1115 B HOH 37 4 HOH HOH 1116 B HOH 38 4 HOH HOH 1117 B HOH 44 4 HOH HOH 1118 B HOH 45 4 HOH HOH 1119 B HOH 46 4 HOH HOH 1120 B HOH 48 4 HOH HOH 1121 B HOH 53 4 HOH HOH 1122 B HOH 57 4 HOH HOH 1123 B HOH 59 4 HOH HOH 1124 B HOH 60 4 HOH HOH 1125 B HOH 61 4 HOH HOH 1126 B HOH 64 4 HOH HOH 1127 B HOH 65 4 HOH HOH 1128 B HOH 68 4 HOH HOH 1129 B HOH 70 4 HOH HOH 1130 B HOH 72 4 HOH HOH 1131 B HOH 73 4 HOH HOH 1132 B HOH 74 4 HOH HOH 1133 B HOH 75 4 HOH HOH 1134 B HOH 78 4 HOH HOH 1135 B HOH 79 4 HOH HOH 1136 B HOH 84 4 HOH HOH 1137 B HOH 85 4 HOH HOH 1138 B HOH 87 4 HOH HOH 1139 B HOH 89 4 HOH HOH 1140 B HOH 90 4 HOH HOH 1141 B HOH 92 4 HOH HOH 1142 B HOH 93 4 HOH HOH 1143 B HOH 95 4 HOH HOH 1144 B HOH 96 4 HOH HOH 1145 B HOH 98 4 HOH HOH 1146 B HOH 99 4 HOH HOH 1147 B HOH 100 4 HOH HOH 1148 B HOH 101 4 HOH HOH 1149 B HOH 104 4 HOH HOH 1150 B HOH 106 4 HOH HOH 1151 B HOH 108 4 HOH HOH 1152 B HOH 111 4 HOH HOH 1153 B HOH 113 4 HOH HOH 1154 B HOH 114 4 HOH HOH 1155 B HOH 115 4 HOH HOH 1156 B HOH 118 4 HOH HOH 1157 B HOH 119 4 HOH HOH 1158 B HOH 120 4 HOH HOH 1159 B HOH 124 4 HOH HOH 1160 B SER 0 n 1 SER 0 A MSE 1 n 2 MSE 1 A LYS 2 n 3 LYS 2 A LEU 3 n 4 LEU 3 A THR 4 n 5 THR 4 A ILE 5 n 6 ILE 5 A PRO 6 n 7 PRO 6 A GLU 7 n 8 GLU 7 A LEU 8 n 9 LEU 8 A SER 9 n 10 SER 9 A LEU 10 n 11 LEU 10 A VAL 11 n 12 VAL 11 A VAL 12 n 13 VAL 12 A LEU 13 n 14 LEU 13 A ILE 14 n 15 ILE 14 A GLY 15 n 16 GLY 15 A SER 16 n 17 SER 16 A SER 17 n 18 SER 17 A GLY 18 n 19 GLY 18 A SER 19 n 20 SER 19 A GLY 20 n 21 GLY 20 A LYS 21 n 22 LYS 21 A SER 22 n 23 SER 22 A THR 23 n 24 THR 23 A PHE 24 n 25 PHE 24 A ALA 25 n 26 ALA 25 A LYS 26 n 27 LYS 26 A LYS 27 n 28 LYS 27 A HIS 28 n 29 HIS 28 A PHE 29 n 30 PHE 29 A LYS 30 n 31 LYS 30 A PRO 31 n 32 PRO 31 A THR 32 n 33 THR 32 A GLU 33 n 34 GLU 33 A VAL 34 n 35 VAL 34 A ILE 35 n 36 ILE 35 A SER 36 n 37 SER 36 A SER 37 n 38 SER 37 A ASP 38 n 39 ASP 38 A PHE 39 n 40 PHE 39 A CYS 40 n 41 CYS 40 A ARG 41 n 42 ARG 41 A GLY 42 n 43 GLY 42 A LEU 43 n 44 LEU 43 A MSE 44 n 45 MSE 44 A SER 45 n 46 SER 45 A ASP 46 n 47 ASP 46 A ASP 47 n 48 ASP 47 A GLU 48 n 49 GLU 48 A ASN 49 n 50 ASN 49 A ASP 50 n 51 ASP 50 A GLN 51 n 52 GLN 51 A THR 52 n 53 THR 52 A VAL 53 n 54 VAL 53 A THR 54 n 55 THR 54 A GLY 55 n 56 GLY 55 A ALA 56 n 57 ALA 56 A ALA 57 n 58 ALA 57 A PHE 58 n 59 PHE 58 A ASP 59 n 60 ASP 59 A VAL 60 n 61 VAL 60 A LEU 61 n 62 LEU 61 A HIS 62 n 63 HIS 62 A TYR 63 n 64 TYR 63 A ILE 64 n 65 ILE 64 A VAL 65 n 66 VAL 65 A SER 66 n 67 SER 66 A LYS 67 n 68 LYS 67 A ARG 68 n 69 ARG 68 A LEU 69 n 70 LEU 69 A GLN 70 n 71 GLN 70 A LEU 71 n 72 LEU 71 A GLY 72 n 73 GLY 72 A LYS 73 n 74 LYS 73 A LEU 74 n 75 LEU 74 A THR 75 n 76 THR 75 A VAL 76 n 77 VAL 76 A VAL 77 n 78 VAL 77 A ASP 78 n 79 ASP 78 A ALA 79 n 80 ALA 79 A THR 80 n 81 THR 80 A ASN 81 n 82 ASN 81 A VAL 82 n 83 VAL 82 A GLN 83 n 84 GLN 83 A GLU 84 n 85 GLU 84 A SER 85 n 86 SER 85 A ALA 86 n 87 ALA 86 A ARG 87 n 88 ARG 87 A LYS 88 n 89 LYS 88 A PRO 89 n 90 PRO 89 A LEU 90 n 91 LEU 90 A ILE 91 n 92 ILE 91 A GLU 92 n 93 GLU 92 A ILE 93 n 94 ILE 93 A ALA 94 n 95 ALA 94 A LYS 95 n 96 LYS 95 A ASP 96 n 97 ASP 96 A TYR 97 n 98 TYR 97 A HIS 98 n 99 HIS 98 A CYS 99 n 100 CYS 99 A PHE 100 n 101 PHE 100 A PRO 101 n 102 PRO 101 A VAL 102 n 103 VAL 102 A ALA 103 n 104 ALA 103 A VAL 104 n 105 VAL 104 A VAL 105 n 106 VAL 105 A PHE 106 n 107 PHE 106 A ASN 107 n 108 ASN 107 A LEU 108 n 109 LEU 108 A PRO 109 n 110 PRO 109 A GLU 110 n 111 GLU 110 A LYS 111 n 112 LYS 111 A VAL 112 n 113 VAL 112 A CYS 113 n 114 CYS 113 A GLN 114 n 115 GLN 114 A GLU 115 n 116 GLU 115 A ARG 116 n 117 ARG 116 A ASN 117 n 118 ASN 117 A LYS 118 n 119 LYS 118 A ASN 119 n 120 ASN 119 A ARG 120 n 121 ARG 120 A THR 121 n 122 THR 121 A ASP 122 n 123 ASP 122 A ARG 123 n 124 ARG 123 A GLN 124 n 125 GLN 124 A VAL 125 n 126 VAL 125 A GLU 126 n 127 GLU 126 A GLU 127 n 128 GLU 127 A TYR 128 n 129 TYR 128 A VAL 129 n 130 VAL 129 A ILE 130 n 131 ILE 130 A ARG 131 n 132 ARG 131 A LYS 132 n 133 LYS 132 A HIS 133 n 134 HIS 133 A THR 134 n 135 THR 134 A GLN 135 n 136 GLN 135 A GLN 136 n 137 GLN 136 A MSE 137 n 138 MSE 137 A LYS 138 n 139 LYS 138 A LYS 139 n 140 LYS 139 A SER 140 n 141 SER 140 A ILE 141 n 142 ILE 141 A LYS 142 n 143 LYS 142 A GLY 143 n 144 GLY 143 A LEU 144 n 145 LEU 144 A GLN 145 n 146 GLN 145 A ARG 146 n 147 ARG 146 A GLU 147 n 148 GLU 147 A GLY 148 n 149 GLY 148 A PHE 149 n 150 PHE 149 A ARG 150 n 151 ARG 150 A TYR 151 n 152 TYR 151 A VAL 152 n 153 VAL 152 A TYR 153 n 154 TYR 153 A ILE 154 n 155 ILE 154 A LEU 155 n 156 LEU 155 A ASN 156 n 157 ASN 156 A SER 157 n 158 SER 157 A PRO 158 n 159 PRO 158 A GLU 159 n 160 GLU 159 A GLU 160 n 161 GLU 160 A VAL 161 n 162 VAL 161 A GLU 162 n 163 GLU 162 A GLU 163 n 164 GLU 163 A VAL 164 n 165 VAL 164 A VAL 165 n 166 VAL 165 A PHE 166 n 167 PHE 166 A GLU 167 n 168 GLU 167 A ARG 168 n 169 ARG 168 A GLN 169 n 170 GLN 169 A PRO 170 n 171 PRO 170 A SER 0 n 1 SER 0 B MSE 1 n 2 MSE 1 B LYS 2 n 3 LYS 2 B LEU 3 n 4 LEU 3 B THR 4 n 5 THR 4 B ILE 5 n 6 ILE 5 B PRO 6 n 7 PRO 6 B GLU 7 n 8 GLU 7 B LEU 8 n 9 LEU 8 B SER 9 n 10 SER 9 B LEU 10 n 11 LEU 10 B VAL 11 n 12 VAL 11 B VAL 12 n 13 VAL 12 B LEU 13 n 14 LEU 13 B ILE 14 n 15 ILE 14 B GLY 15 n 16 GLY 15 B SER 16 n 17 SER 16 B SER 17 n 18 SER 17 B GLY 18 n 19 GLY 18 B SER 19 n 20 SER 19 B GLY 20 n 21 GLY 20 B LYS 21 n 22 LYS 21 B SER 22 n 23 SER 22 B THR 23 n 24 THR 23 B PHE 24 n 25 PHE 24 B ALA 25 n 26 ALA 25 B LYS 26 n 27 LYS 26 B LYS 27 n 28 LYS 27 B HIS 28 n 29 HIS 28 B PHE 29 n 30 PHE 29 B LYS 30 n 31 LYS 30 B PRO 31 n 32 PRO 31 B THR 32 n 33 THR 32 B GLU 33 n 34 GLU 33 B VAL 34 n 35 VAL 34 B ILE 35 n 36 ILE 35 B SER 36 n 37 SER 36 B SER 37 n 38 SER 37 B ASP 38 n 39 ASP 38 B PHE 39 n 40 PHE 39 B CYS 40 n 41 CYS 40 B ARG 41 n 42 ARG 41 B GLY 42 n 43 GLY 42 B LEU 43 n 44 LEU 43 B MSE 44 n 45 MSE 44 B SER 45 n 46 SER 45 B ASP 46 n 47 ASP 46 B ASP 47 n 48 ASP 47 B GLU 48 n 49 GLU 48 B ASN 49 n 50 ASN 49 B ASP 50 n 51 ASP 50 B GLN 51 n 52 GLN 51 B THR 52 n 53 THR 52 B VAL 53 n 54 VAL 53 B THR 54 n 55 THR 54 B GLY 55 n 56 GLY 55 B ALA 56 n 57 ALA 56 B ALA 57 n 58 ALA 57 B PHE 58 n 59 PHE 58 B ASP 59 n 60 ASP 59 B VAL 60 n 61 VAL 60 B LEU 61 n 62 LEU 61 B HIS 62 n 63 HIS 62 B TYR 63 n 64 TYR 63 B ILE 64 n 65 ILE 64 B VAL 65 n 66 VAL 65 B SER 66 n 67 SER 66 B LYS 67 n 68 LYS 67 B ARG 68 n 69 ARG 68 B LEU 69 n 70 LEU 69 B GLN 70 n 71 GLN 70 B LEU 71 n 72 LEU 71 B GLY 72 n 73 GLY 72 B LYS 73 n 74 LYS 73 B LEU 74 n 75 LEU 74 B THR 75 n 76 THR 75 B VAL 76 n 77 VAL 76 B VAL 77 n 78 VAL 77 B ASP 78 n 79 ASP 78 B ALA 79 n 80 ALA 79 B THR 80 n 81 THR 80 B ASN 81 n 82 ASN 81 B VAL 82 n 83 VAL 82 B GLN 83 n 84 GLN 83 B GLU 84 n 85 GLU 84 B SER 85 n 86 SER 85 B ALA 86 n 87 ALA 86 B ARG 87 n 88 ARG 87 B LYS 88 n 89 LYS 88 B PRO 89 n 90 PRO 89 B LEU 90 n 91 LEU 90 B ILE 91 n 92 ILE 91 B GLU 92 n 93 GLU 92 B ILE 93 n 94 ILE 93 B ALA 94 n 95 ALA 94 B LYS 95 n 96 LYS 95 B ASP 96 n 97 ASP 96 B TYR 97 n 98 TYR 97 B HIS 98 n 99 HIS 98 B CYS 99 n 100 CYS 99 B PHE 100 n 101 PHE 100 B PRO 101 n 102 PRO 101 B VAL 102 n 103 VAL 102 B ALA 103 n 104 ALA 103 B VAL 104 n 105 VAL 104 B VAL 105 n 106 VAL 105 B PHE 106 n 107 PHE 106 B ASN 107 n 108 ASN 107 B LEU 108 n 109 LEU 108 B PRO 109 n 110 PRO 109 B GLU 110 n 111 GLU 110 B LYS 111 n 112 LYS 111 B VAL 112 n 113 VAL 112 B CYS 113 n 114 CYS 113 B GLN 114 n 115 GLN 114 B GLU 115 n 116 GLU 115 B ARG 116 n 117 ARG 116 B ASN 117 n 118 ASN 117 B LYS 118 n 119 LYS 118 B ASN 119 n 120 ASN 119 B ARG 120 n 121 ARG 120 B THR 121 n 122 THR 121 B ASP 122 n 123 ASP 122 B ARG 123 n 124 ARG 123 B GLN 124 n 125 GLN 124 B VAL 125 n 126 VAL 125 B GLU 126 n 127 GLU 126 B GLU 127 n 128 GLU 127 B TYR 128 n 129 TYR 128 B VAL 129 n 130 VAL 129 B ILE 130 n 131 ILE 130 B ARG 131 n 132 ARG 131 B LYS 132 n 133 LYS 132 B HIS 133 n 134 HIS 133 B THR 134 n 135 THR 134 B GLN 135 n 136 GLN 135 B GLN 136 n 137 GLN 136 B MSE 137 n 138 MSE 137 B LYS 138 n 139 LYS 138 B LYS 139 n 140 LYS 139 B SER 140 n 141 SER 140 B ILE 141 n 142 ILE 141 B LYS 142 n 143 LYS 142 B GLY 143 n 144 GLY 143 B LEU 144 n 145 LEU 144 B GLN 145 n 146 GLN 145 B ARG 146 n 147 ARG 146 B GLU 147 n 148 GLU 147 B GLY 148 n 149 GLY 148 B PHE 149 n 150 PHE 149 B ARG 150 n 151 ARG 150 B TYR 151 n 152 TYR 151 B VAL 152 n 153 VAL 152 B TYR 153 n 154 TYR 153 B ILE 154 n 155 ILE 154 B LEU 155 n 156 LEU 155 B ASN 156 n 157 ASN 156 B SER 157 n 158 SER 157 B PRO 158 n 159 PRO 158 B GLU 159 n 160 GLU 159 B GLU 160 n 161 GLU 160 B VAL 161 n 162 VAL 161 B GLU 162 n 163 GLU 162 B GLU 163 n 164 GLU 163 B VAL 164 n 165 VAL 164 B VAL 165 n 166 VAL 165 B PHE 166 n 167 PHE 166 B GLU 167 n 168 GLU 167 B ARG 168 n 169 ARG 168 B GLN 169 n 170 GLN 169 B n 171 170 B 1.0291 0.2912 -0.9852 0.4888 -0.2772 1.5089 -0.1582 0.0631 0.2792 -0.1092 0.1618 0.0920 0.4995 0.0169 -0.0157 0.2463 0.0356 -0.0048 0.2247 0.0253 0.2188 refined 30.7947 25.9952 75.8771 X-RAY DIFFRACTION 0.3620 0.3698 0.1349 1.2509 0.3022 0.5101 0.0692 0.0611 0.0774 0.1798 -0.0874 -0.0102 0.2089 0.2604 -0.0080 0.2469 0.1178 0.0026 0.2167 0.0319 0.2676 refined 30.7807 21.8585 91.0050 X-RAY DIFFRACTION 0.3285 -0.1550 0.0437 0.1463 -0.1669 0.2406 -0.0960 -0.1668 -0.0742 0.0205 -0.0188 0.0440 -0.1234 0.1707 -0.0002 0.2557 0.0065 0.0097 0.2026 0.0153 0.1983 refined 28.9785 33.8448 86.3555 X-RAY DIFFRACTION 0.0540 0.0828 -0.2290 0.3267 0.1812 0.5724 0.0184 0.0871 -0.0021 -0.0454 -0.0895 0.1109 0.1713 0.0414 -0.0313 0.2100 -0.0376 -0.0020 0.1700 0.0197 0.2611 refined 18.1228 21.7277 79.7926 X-RAY DIFFRACTION 0.2072 0.1043 -0.2619 0.0666 -0.1459 0.3357 -0.0230 0.0693 0.0042 -0.3339 -0.1257 -0.1026 0.3638 0.3951 -0.1798 0.4051 0.1549 0.0022 0.4011 0.0612 0.2283 refined 33.4941 20.8772 70.8307 X-RAY DIFFRACTION 1.1642 0.3439 -1.0408 0.6746 -0.1644 1.0038 0.0730 0.1255 -0.1133 -0.0143 -0.0334 -0.0550 0.1400 0.0319 0.0012 0.1886 0.0301 -0.0313 0.2143 -0.0175 0.1812 refined 28.0180 35.3266 49.1130 X-RAY DIFFRACTION 0.0902 -0.2747 -0.1240 0.9976 -0.0894 1.1330 0.0969 0.0220 -0.1072 -0.0828 -0.0606 0.1319 0.0315 -0.1753 -0.0001 0.1516 -0.0171 -0.0306 0.2691 0.0019 0.2154 refined 16.3492 36.9154 56.6636 X-RAY DIFFRACTION X-RAY DIFFRACTION 1 CHAIN A AND (RESID 0:20 ) X-RAY DIFFRACTION 2 CHAIN A AND (RESID 21:50 ) X-RAY DIFFRACTION 3 CHAIN A AND (RESID 51:106 ) X-RAY DIFFRACTION 4 CHAIN A AND (RESID 107:157 ) X-RAY DIFFRACTION 5 CHAIN A AND (RESID 158:170 ) X-RAY DIFFRACTION 6 CHAIN B AND (RESID 0:106 ) X-RAY DIFFRACTION 7 CHAIN B AND (RESID 107:169 ) author_defined_assembly 2 dimeric 3440 -35 16450 A CTP 202 D O3G CTP 1_555 A MG 201 C MG MG 1_555 A CTP 202 D O2B CTP 1_555 88.4 A CTP 202 D O3G CTP 1_555 A MG 201 C MG MG 1_555 A SER 22 A OG SER 23 1_555 167.1 A CTP 202 D O2B CTP 1_555 A MG 201 C MG MG 1_555 A SER 22 A OG SER 23 1_555 91.3 A CTP 202 D O3G CTP 1_555 A MG 201 C MG MG 1_555 A HOH 366 G O HOH 1_555 97.0 A CTP 202 D O2B CTP 1_555 A MG 201 C MG MG 1_555 A HOH 366 G O HOH 1_555 93.4 A SER 22 A OG SER 23 1_555 A MG 201 C MG MG 1_555 A HOH 366 G O HOH 1_555 95.9 A CTP 202 D O3G CTP 1_555 A MG 201 C MG MG 1_555 A HOH 301 G O HOH 1_555 82.7 A CTP 202 D O2B CTP 1_555 A MG 201 C MG MG 1_555 A HOH 301 G O HOH 1_555 98.6 A SER 22 A OG SER 23 1_555 A MG 201 C MG MG 1_555 A HOH 301 G O HOH 1_555 84.6 A HOH 366 G O HOH 1_555 A MG 201 C MG MG 1_555 A HOH 301 G O HOH 1_555 167.9 A CTP 202 D O3G CTP 1_555 A MG 201 C MG MG 1_555 A HOH 330 G O HOH 1_555 94.6 A CTP 202 D O2B CTP 1_555 A MG 201 C MG MG 1_555 A HOH 330 G O HOH 1_555 172.5 A SER 22 A OG SER 23 1_555 A MG 201 C MG MG 1_555 A HOH 330 G O HOH 1_555 84.3 A HOH 366 G O HOH 1_555 A MG 201 C MG MG 1_555 A HOH 330 G O HOH 1_555 93.0 A HOH 301 G O HOH 1_555 A MG 201 C MG MG 1_555 A HOH 330 G O HOH 1_555 75.1 B CTP 1001 E O2B CTP 1_555 B MG 1002 F MG MG 1_555 B CTP 1001 E O3G CTP 1_555 87.8 B CTP 1001 E O2B CTP 1_555 B MG 1002 F MG MG 1_555 B SER 22 B OG SER 23 1_555 94.0 B CTP 1001 E O3G CTP 1_555 B MG 1002 F MG MG 1_555 B SER 22 B OG SER 23 1_555 163.6 B CTP 1001 E O2B CTP 1_555 B MG 1002 F MG MG 1_555 B HOH 1144 H O HOH 1_555 93.4 B CTP 1001 E O3G CTP 1_555 B MG 1002 F MG MG 1_555 B HOH 1144 H O HOH 1_555 94.6 B SER 22 B OG SER 23 1_555 B MG 1002 F MG MG 1_555 B HOH 1144 H O HOH 1_555 101.5 B CTP 1001 E O2B CTP 1_555 B MG 1002 F MG MG 1_555 B HOH 1146 H O HOH 1_555 95.1 B CTP 1001 E O3G CTP 1_555 B MG 1002 F MG MG 1_555 B HOH 1146 H O HOH 1_555 82.1 B SER 22 B OG SER 23 1_555 B MG 1002 F MG MG 1_555 B HOH 1146 H O HOH 1_555 81.6 B HOH 1144 H O HOH 1_555 B MG 1002 F MG MG 1_555 B HOH 1146 H O HOH 1_555 170.7 B CTP 1001 E O2B CTP 1_555 B MG 1002 F MG MG 1_555 B HOH 1122 H O HOH 1_555 168.0 B CTP 1001 E O3G CTP 1_555 B MG 1002 F MG MG 1_555 B HOH 1122 H O HOH 1_555 93.2 B SER 22 B OG SER 23 1_555 B MG 1002 F MG MG 1_555 B HOH 1122 H O HOH 1_555 81.8 B HOH 1144 H O HOH 1_555 B MG 1002 F MG MG 1_555 B HOH 1122 H O HOH 1_555 98.4 B HOH 1146 H O HOH 1_555 B MG 1002 F MG MG 1_555 B HOH 1122 H O HOH 1_555 73.3 A MSE 1 SELENOMETHIONINE A MSE 2 MET A MSE 44 SELENOMETHIONINE A MSE 45 MET A MSE 137 SELENOMETHIONINE A MSE 138 MET B MSE 1 SELENOMETHIONINE B MSE 2 MET B MSE 44 SELENOMETHIONINE B MSE 45 MET B MSE 137 SELENOMETHIONINE B MSE 138 MET 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N LEU 3 A N LEU 4 A O GLU 167 A O GLU 168 A N ILE 35 A N ILE 36 A O VAL 76 A O VAL 77 A O VAL 77 A O VAL 78 A N VAL 11 A N VAL 12 A N VAL 12 A N VAL 13 A O VAL 102 A O VAL 103 A N VAL 105 A N VAL 106 A O TYR 153 A O TYR 154 B N LEU 3 B N LEU 4 B O GLU 167 B O GLU 168 B N ILE 35 B N ILE 36 B O VAL 76 B O VAL 77 B O VAL 77 B O VAL 78 B N VAL 11 B N VAL 12 B N VAL 12 B N VAL 13 B O VAL 102 B O VAL 103 B N VAL 105 B N VAL 106 B O TYR 153 B O TYR 154 1 B PRO 170 B PRO 171 1 Y 1 A A O O ASP HOH 47 362 2.16 1 9.87 1.40 123.60 133.47 A A A CD NE CZ ARG ARG ARG 68 68 68 N 1 -7.83 0.50 120.30 112.47 A A A NE CZ NH1 ARG ARG ARG 68 68 68 N 1 7.13 0.50 120.30 127.43 A A A NE CZ NH2 ARG ARG ARG 68 68 68 N 1 5.22 0.50 120.30 125.52 B B B NE CZ NH1 ARG ARG ARG 68 68 68 N 1 -6.27 0.50 120.30 114.03 B B B NE CZ NH2 ARG ARG ARG 68 68 68 N 1 B B O NH2 GLN ARG 70 131 2.18 1_555 1_655 0.2265 0.1809 0.1846 2.49 44.538 1037 13260 13101 7.92 98.75 0.25 random 1 1.34 Direct refinement 22.74 0.90 1.11 ML FLAT BULK SOLVENT MODEL 2.49 44.538 126 2917 60 0 2731 0.006 2859 1.093 3869 16.159 1113 0.064 438 0.005 489 1 A 1 1282 X-RAY DIFFRACTION POSITIONAL 2 B 1 1282 X-RAY DIFFRACTION POSITIONAL 0.060 0.2870 0.2024 2.6226 136 1570 92.00 0.2286 0.2078 2.7869 148 1712 100.00 0.2729 0.1966 3.0020 146 1714 100.00 0.2494 0.1949 3.3040 147 1711 100.00 0.2444 0.1867 3.7819 151 1745 100.00 0.1803 0.1525 4.7640 150 1751 100.00 0.2087 0.1742 44.5453 159 1861 100.00 2.48 58.0 4JT2 13156 13156 -999 -999 1 100 2.48 2.58 1 100 2.58 58 1 100 data collection CBASS model building PHENIX refinement PHENIX (phenix.refine: 1.8.1_1168) data reduction MOSFLM data scaling SCALA phasing PHENIX Metallophosphoesterase (E.C.2.7.1.78) Structure of Clostridium thermocellum polynucleotide kinase bound to CTP 1 N N 1 N N 2 N N 3 N N 3 N N 2 N N 4 N N 4 N N A GLY 20 A GLY 21 HELX_P A PHE 29 A PHE 30 1 1 10 A LYS 30 A LYS 31 HELX_P A THR 32 A THR 33 5 2 3 A SER 37 A SER 38 HELX_P A SER 45 A SER 46 1 3 9 A ASP 50 A ASP 51 HELX_P A THR 52 A THR 53 5 4 3 A VAL 53 A VAL 54 HELX_P A LEU 71 A LEU 72 1 5 19 A GLN 83 A GLN 84 HELX_P A TYR 97 A TYR 98 1 6 15 A PRO 109 A PRO 110 HELX_P A ARG 120 A ARG 121 1 7 12 A GLU 126 A GLU 127 HELX_P A ILE 141 A ILE 142 1 8 16 A GLY 143 A GLY 144 HELX_P A GLY 148 A GLY 149 1 9 6 A SER 157 A SER 158 HELX_P A GLU 163 A GLU 164 1 10 7 B GLY 20 B GLY 21 HELX_P B PHE 29 B PHE 30 1 11 10 B LYS 30 B LYS 31 HELX_P B THR 32 B THR 33 5 12 3 B SER 37 B SER 38 HELX_P B SER 45 B SER 46 1 13 9 B ASP 50 B ASP 51 HELX_P B THR 52 B THR 53 5 14 3 B VAL 53 B VAL 54 HELX_P B LEU 71 B LEU 72 1 15 19 B GLN 83 B GLN 84 HELX_P B TYR 97 B TYR 98 1 16 15 B PRO 109 B PRO 110 HELX_P B ARG 120 B ARG 121 1 17 12 B GLU 126 B GLU 127 HELX_P B ILE 141 B ILE 142 1 18 16 B GLY 143 B GLY 144 HELX_P B GLY 148 B GLY 149 1 19 6 B SER 157 B SER 158 HELX_P B GLU 163 B GLU 164 1 20 7 covale 1.329 A SER 0 A C SER 1 1_555 A MSE 1 A N MSE 2 1_555 covale 1.331 A MSE 1 A C MSE 2 1_555 A LYS 2 A N LYS 3 1_555 covale 1.330 A LEU 43 A C LEU 44 1_555 A MSE 44 A N MSE 45 1_555 covale 1.326 A MSE 44 A C MSE 45 1_555 A SER 45 A N SER 46 1_555 covale 1.333 A GLN 136 A C GLN 137 1_555 A MSE 137 A N MSE 138 1_555 covale 1.331 A MSE 137 A C MSE 138 1_555 A LYS 138 A N LYS 139 1_555 covale 1.325 B SER 0 B C SER 1 1_555 B MSE 1 B N MSE 2 1_555 covale 1.332 B MSE 1 B C MSE 2 1_555 B LYS 2 B N LYS 3 1_555 covale 1.326 B LEU 43 B C LEU 44 1_555 B MSE 44 B N MSE 45 1_555 covale 1.326 B MSE 44 B C MSE 45 1_555 B SER 45 B N SER 46 1_555 covale 1.329 B GLN 136 B C GLN 137 1_555 B MSE 137 B N MSE 138 1_555 covale 1.328 B MSE 137 B C MSE 138 1_555 B LYS 138 B N LYS 139 1_555 metalc 1.844 A MG 201 C MG MG 1_555 A CTP 202 D O3G CTP 1_555 metalc 1.935 B CTP 1001 E O2B CTP 1_555 B MG 1002 F MG MG 1_555 metalc 1.972 B CTP 1001 E O3G CTP 1_555 B MG 1002 F MG MG 1_555 metalc 1.973 A MG 201 C MG MG 1_555 A CTP 202 D O2B CTP 1_555 metalc 2.076 B SER 22 B OG SER 23 1_555 B MG 1002 F MG MG 1_555 metalc 2.194 A SER 22 A OG SER 23 1_555 A MG 201 C MG MG 1_555 metalc 1.852 A MG 201 C MG MG 1_555 A HOH 366 G O HOH 1_555 metalc 1.977 A MG 201 C MG MG 1_555 A HOH 301 G O HOH 1_555 metalc 2.080 A MG 201 C MG MG 1_555 A HOH 330 G O HOH 1_555 metalc 2.103 B MG 1002 F MG MG 1_555 B HOH 1144 H O HOH 1_555 metalc 2.142 B MG 1002 F MG MG 1_555 B HOH 1146 H O HOH 1_555 metalc 2.220 B MG 1002 F MG MG 1_555 B HOH 1122 H O HOH 1_555 TRANSFERASE RNA repair, P-loop phosphotransferase, Polynucleotide kinase, Transferase CHAIN A AND (RESSEQ 0:47 OR RESSEQ 53:167 ) CHAIN B AND (RESSEQ 0:47 OR RESSEQ 53:167 ) A3DJ38_CLOTH UNP 1 1 A3DJ38 MKLTIPELSLVVLIGSSGSGKSTFAKKHFKPTEVISSDFCRGLVSDDENDQTVTGAAFDVLHYIVSKRLQLGKLTVVDAT NVQESARKPLIEIAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQLKKSIKGLQREGFRYVYILNSPEE VEEVVFERQP 1 170 4JT2 1 170 A3DJ38 A 1 2 171 1 170 4JT2 1 170 A3DJ38 B 1 2 171 1 EXPRESSION TAG SER 0 4JT2 A A3DJ38 UNP 1 1 VAL ENGINEERED MUTATION MSE 44 4JT2 A A3DJ38 UNP 44 45 1 LEU ENGINEERED MUTATION MSE 137 4JT2 A A3DJ38 UNP 137 138 2 EXPRESSION TAG SER 0 4JT2 B A3DJ38 UNP 1 2 VAL ENGINEERED MUTATION MSE 44 4JT2 B A3DJ38 UNP 44 45 2 LEU ENGINEERED MUTATION MSE 137 4JT2 B A3DJ38 UNP 137 138 2 5 2 5 parallel parallel parallel parallel parallel parallel parallel parallel parallel parallel A MSE 1 A MSE 2 A PRO 6 A PRO 7 A VAL 164 A VAL 165 A GLN 169 A GLN 170 A VAL 34 A VAL 35 A SER 36 A SER 37 A THR 75 A THR 76 A ASP 78 A ASP 79 A SER 9 A SER 10 A ILE 14 A ILE 15 A PHE 100 A PHE 101 A PHE 106 A PHE 107 A TYR 151 A TYR 152 A LEU 155 A LEU 156 B MSE 1 B MSE 2 B PRO 6 B PRO 7 B VAL 164 B VAL 165 B GLN 169 B GLN 170 B VAL 34 B VAL 35 B SER 36 B SER 37 B THR 75 B THR 76 B ASP 78 B ASP 79 B SER 9 B SER 10 B ILE 14 B ILE 15 B PHE 100 B PHE 101 B PHE 106 B PHE 107 B TYR 151 B TYR 152 B LEU 155 B LEU 156 BINDING SITE FOR RESIDUE MG A 201 Software 6 BINDING SITE FOR RESIDUE CTP A 202 Software 18 BINDING SITE FOR RESIDUE CTP B 1001 Software 16 BINDING SITE FOR RESIDUE MG B 1002 Software 6 A SER 22 A SER 23 6 1_555 A ARG 123 A ARG 124 6 1_555 A CTP 202 D CTP 6 1_555 A HOH 301 G HOH 6 1_555 A HOH 330 G HOH 6 1_555 A HOH 366 G HOH 6 1_555 A SER 16 A SER 17 18 1_555 A SER 17 A SER 18 18 1_555 A GLY 18 A GLY 19 18 1_555 A SER 19 A SER 20 18 1_555 A GLY 20 A GLY 21 18 1_555 A LYS 21 A LYS 22 18 1_555 A SER 22 A SER 23 18 1_555 A THR 23 A THR 24 18 1_555 A ARG 116 A ARG 117 18 1_555 A ARG 120 A ARG 121 18 1_555 A ARG 123 A ARG 124 18 1_555 A MG 201 C MG 18 1_555 A HOH 301 G HOH 18 1_555 A HOH 310 G HOH 18 1_555 A HOH 317 G HOH 18 1_555 A HOH 330 G HOH 18 1_555 A HOH 336 G HOH 18 1_555 A HOH 366 G HOH 18 1_555 B SER 17 B SER 18 16 1_555 B GLY 18 B GLY 19 16 1_555 B GLY 20 B GLY 21 16 1_555 B LYS 21 B LYS 22 16 1_555 B SER 22 B SER 23 16 1_555 B THR 23 B THR 24 16 1_555 B ARG 116 B ARG 117 16 1_555 B ARG 120 B ARG 121 16 1_555 B ARG 123 B ARG 124 16 1_555 B MG 1002 F MG 16 1_555 B HOH 1122 H HOH 16 1_555 B HOH 1130 H HOH 16 1_555 B HOH 1135 H HOH 16 1_555 B HOH 1144 H HOH 16 1_555 B HOH 1146 H HOH 16 1_555 B HOH 1147 H HOH 16 1_555 B SER 22 B SER 23 6 1_555 B ARG 123 B ARG 124 6 1_555 B CTP 1001 E CTP 6 1_555 B HOH 1122 H HOH 6 1_555 B HOH 1144 H HOH 6 1_555 B HOH 1146 H HOH 6 1_555 19 P 21 21 21