0.022072 0.000000 0.000000 0.000000 0.014974 0.000000 0.000000 0.000000 0.008365 0.00000 0.00000 0.00000 Das, U. Wang, L.K. Smith, P. Shuman, S. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 45.306 66.781 119.546 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C10 H16 N5 O12 P3 491.182 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE non-polymer C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking Mg 2 24.305 MAGNESIUM ION non-polymer C5 H11 N O2 Se 196.106 n SELENOMETHIONINE L-peptide linking Na 1 22.990 SODIUM ION non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US Biochemistry BICHAW 0033 0006-2960 52 4734 4743 10.1021/bi400412x 23721485 Structural and biochemical analysis of the phosphate donor specificity of the polynucleotide kinase component of the bacterial pnkphen1 RNA repair system. 2013 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 130 1 PIXEL 2012-09-26 DECTRIS PILATUS 6M SINGLE WAVELENGTH M x-ray 1 1.1 1.0 X25 NSLS 1.1 SYNCHROTRON NSLS BEAMLINE X25 19661.062 Metallophosphoesterase 2.7.1.78 V44M, L137M 2 man polymer 24.305 MAGNESIUM ION 2 syn non-polymer 491.182 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE 2 syn non-polymer 22.990 SODIUM ION 1 syn non-polymer 18.015 water 279 nat water no yes S(MSE)KLTIPELSLVVLIGSSGSGKSTFAKKHFKPTEVISSDFCRGL(MSE)SDDENDQTVTGAAFDVLHYIVSKRLQL GKLTVVDATNVQESARKPLIEIAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQ(MSE)KKSIKGLQRE GFRYVYILNSPEEVEEVVFERQP SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPTEVISSDFCRGLMSDDENDQTVTGAAFDVLHYIVSKRLQLGKLTVVDA TNVQESARKPLIEIAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPE EVEEVVFERQP A,B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n ATCC 27405 / DSM 1237 sample Cthe_2768 203119 Clostridium thermocellum 562 Escherichia coli 1 2.30 46.51 VAPOR DIFFUSION, HANGING DROP 5.6 100mM sodium citrate, 100mM MgCl2, 16-18% PEG 3350, 2mM dATP, pH 5.6, VAPOR DIFFUSION, HANGING DROP, temperature 298K 298 repository Initial release Database references 1 0 2013-08-28 1 1 2013-12-18 Same protein complexed with ATP Same protein complexed with ADP RCSB Y RCSB 2013-03-22 REL REL MG MAGNESIUM ION DTP 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE NA SODIUM ION HOH water MG 1002 2 MG MG 201 A DTP 1001 3 DTP DTP 202 A MG 1002 2 MG MG 201 B DTP 1001 3 DTP DTP 202 B NA 1003 4 NA NA 203 B HOH 1 5 HOH HOH 301 A HOH 4 5 HOH HOH 302 A HOH 6 5 HOH HOH 303 A HOH 7 5 HOH HOH 304 A HOH 8 5 HOH HOH 305 A HOH 13 5 HOH HOH 306 A HOH 15 5 HOH HOH 307 A HOH 16 5 HOH HOH 308 A HOH 17 5 HOH HOH 309 A HOH 19 5 HOH HOH 310 A HOH 20 5 HOH HOH 311 A HOH 21 5 HOH HOH 312 A HOH 23 5 HOH HOH 313 A HOH 24 5 HOH HOH 314 A HOH 29 5 HOH HOH 315 A HOH 32 5 HOH HOH 316 A HOH 33 5 HOH HOH 317 A HOH 37 5 HOH HOH 318 A HOH 38 5 HOH HOH 319 A HOH 39 5 HOH HOH 320 A HOH 41 5 HOH HOH 321 A HOH 42 5 HOH HOH 322 A HOH 43 5 HOH HOH 323 A HOH 44 5 HOH HOH 324 A HOH 50 5 HOH HOH 325 A HOH 51 5 HOH HOH 326 A HOH 55 5 HOH HOH 327 A HOH 58 5 HOH HOH 328 A HOH 59 5 HOH HOH 329 A HOH 62 5 HOH HOH 330 A HOH 63 5 HOH HOH 331 A HOH 64 5 HOH HOH 332 A HOH 68 5 HOH HOH 333 A HOH 69 5 HOH HOH 334 A HOH 71 5 HOH HOH 335 A HOH 77 5 HOH HOH 336 A HOH 79 5 HOH HOH 337 A HOH 82 5 HOH HOH 338 A HOH 84 5 HOH HOH 339 A HOH 86 5 HOH HOH 340 A HOH 87 5 HOH HOH 341 A HOH 88 5 HOH HOH 342 A HOH 91 5 HOH HOH 343 A HOH 92 5 HOH HOH 344 A HOH 93 5 HOH HOH 345 A HOH 95 5 HOH HOH 346 A HOH 96 5 HOH HOH 347 A HOH 97 5 HOH HOH 348 A HOH 99 5 HOH HOH 349 A HOH 101 5 HOH HOH 350 A HOH 108 5 HOH HOH 351 A HOH 109 5 HOH HOH 352 A HOH 111 5 HOH HOH 353 A HOH 112 5 HOH HOH 354 A HOH 116 5 HOH HOH 355 A HOH 117 5 HOH HOH 356 A HOH 118 5 HOH HOH 357 A HOH 120 5 HOH HOH 358 A HOH 121 5 HOH HOH 359 A HOH 122 5 HOH HOH 360 A HOH 123 5 HOH HOH 361 A HOH 125 5 HOH HOH 362 A HOH 128 5 HOH HOH 363 A HOH 131 5 HOH HOH 364 A HOH 134 5 HOH HOH 365 A HOH 136 5 HOH HOH 366 A HOH 138 5 HOH HOH 367 A HOH 139 5 HOH HOH 368 A HOH 140 5 HOH HOH 369 A HOH 141 5 HOH HOH 370 A HOH 142 5 HOH HOH 371 A HOH 143 5 HOH HOH 372 A HOH 146 5 HOH HOH 373 A HOH 147 5 HOH HOH 374 A HOH 150 5 HOH HOH 375 A HOH 151 5 HOH HOH 376 A HOH 153 5 HOH HOH 377 A HOH 154 5 HOH HOH 378 A HOH 155 5 HOH HOH 379 A HOH 158 5 HOH HOH 380 A HOH 159 5 HOH HOH 381 A HOH 160 5 HOH HOH 382 A HOH 163 5 HOH HOH 383 A HOH 172 5 HOH HOH 384 A HOH 173 5 HOH HOH 385 A HOH 181 5 HOH HOH 386 A HOH 183 5 HOH HOH 387 A HOH 184 5 HOH HOH 388 A HOH 186 5 HOH HOH 389 A HOH 187 5 HOH HOH 390 A HOH 189 5 HOH HOH 391 A HOH 190 5 HOH HOH 392 A HOH 194 5 HOH HOH 393 A HOH 195 5 HOH HOH 394 A HOH 196 5 HOH HOH 395 A HOH 197 5 HOH HOH 396 A HOH 199 5 HOH HOH 397 A HOH 200 5 HOH HOH 398 A HOH 203 5 HOH HOH 399 A HOH 205 5 HOH HOH 400 A HOH 209 5 HOH HOH 401 A HOH 211 5 HOH HOH 402 A HOH 213 5 HOH HOH 403 A HOH 215 5 HOH HOH 404 A HOH 218 5 HOH HOH 405 A HOH 219 5 HOH HOH 406 A HOH 220 5 HOH HOH 407 A HOH 226 5 HOH HOH 408 A HOH 227 5 HOH HOH 409 A HOH 228 5 HOH HOH 410 A HOH 229 5 HOH HOH 411 A HOH 231 5 HOH HOH 412 A HOH 234 5 HOH HOH 413 A HOH 236 5 HOH HOH 414 A HOH 239 5 HOH HOH 415 A HOH 241 5 HOH HOH 416 A HOH 245 5 HOH HOH 417 A HOH 246 5 HOH HOH 418 A HOH 247 5 HOH HOH 419 A HOH 248 5 HOH HOH 420 A HOH 249 5 HOH HOH 421 A HOH 252 5 HOH HOH 422 A HOH 253 5 HOH HOH 423 A HOH 254 5 HOH HOH 424 A HOH 255 5 HOH HOH 425 A HOH 257 5 HOH HOH 426 A HOH 258 5 HOH HOH 427 A HOH 259 5 HOH HOH 428 A HOH 260 5 HOH HOH 429 A HOH 262 5 HOH HOH 430 A HOH 265 5 HOH HOH 431 A HOH 266 5 HOH HOH 432 A HOH 267 5 HOH HOH 433 A HOH 269 5 HOH HOH 434 A HOH 270 5 HOH HOH 435 A HOH 271 5 HOH HOH 436 A HOH 274 5 HOH HOH 437 A HOH 279 5 HOH HOH 438 A HOH 2 5 HOH HOH 301 B HOH 3 5 HOH HOH 302 B HOH 5 5 HOH HOH 303 B HOH 9 5 HOH HOH 304 B HOH 10 5 HOH HOH 305 B HOH 11 5 HOH HOH 306 B HOH 12 5 HOH HOH 307 B HOH 14 5 HOH HOH 308 B HOH 18 5 HOH HOH 309 B HOH 22 5 HOH HOH 310 B HOH 25 5 HOH HOH 311 B HOH 26 5 HOH HOH 312 B HOH 27 5 HOH HOH 313 B HOH 28 5 HOH HOH 314 B HOH 30 5 HOH HOH 315 B HOH 31 5 HOH HOH 316 B HOH 34 5 HOH HOH 317 B HOH 35 5 HOH HOH 318 B HOH 36 5 HOH HOH 319 B HOH 40 5 HOH HOH 320 B HOH 45 5 HOH HOH 321 B HOH 46 5 HOH HOH 322 B HOH 47 5 HOH HOH 323 B HOH 48 5 HOH HOH 324 B HOH 49 5 HOH HOH 325 B HOH 52 5 HOH HOH 326 B HOH 53 5 HOH HOH 327 B HOH 54 5 HOH HOH 328 B HOH 56 5 HOH HOH 329 B HOH 57 5 HOH HOH 330 B HOH 60 5 HOH HOH 331 B HOH 61 5 HOH HOH 332 B HOH 65 5 HOH HOH 333 B HOH 66 5 HOH HOH 334 B HOH 67 5 HOH HOH 335 B HOH 70 5 HOH HOH 336 B HOH 72 5 HOH HOH 337 B HOH 73 5 HOH HOH 338 B HOH 74 5 HOH HOH 339 B HOH 75 5 HOH HOH 340 B HOH 76 5 HOH HOH 341 B HOH 78 5 HOH HOH 342 B HOH 80 5 HOH HOH 343 B HOH 81 5 HOH HOH 344 B HOH 83 5 HOH HOH 345 B HOH 85 5 HOH HOH 346 B HOH 89 5 HOH HOH 347 B HOH 90 5 HOH HOH 348 B HOH 94 5 HOH HOH 349 B HOH 98 5 HOH HOH 350 B HOH 100 5 HOH HOH 351 B HOH 102 5 HOH HOH 352 B HOH 103 5 HOH HOH 353 B HOH 104 5 HOH HOH 354 B HOH 105 5 HOH HOH 355 B HOH 106 5 HOH HOH 356 B HOH 107 5 HOH HOH 357 B HOH 110 5 HOH HOH 358 B HOH 113 5 HOH HOH 359 B HOH 114 5 HOH HOH 360 B HOH 115 5 HOH HOH 361 B HOH 119 5 HOH HOH 362 B HOH 124 5 HOH HOH 363 B HOH 126 5 HOH HOH 364 B HOH 127 5 HOH HOH 365 B HOH 129 5 HOH HOH 366 B HOH 130 5 HOH HOH 367 B HOH 132 5 HOH HOH 368 B HOH 133 5 HOH HOH 369 B HOH 135 5 HOH HOH 370 B HOH 137 5 HOH HOH 371 B HOH 144 5 HOH HOH 372 B HOH 145 5 HOH HOH 373 B HOH 148 5 HOH HOH 374 B HOH 149 5 HOH HOH 375 B HOH 152 5 HOH HOH 376 B HOH 156 5 HOH HOH 377 B HOH 157 5 HOH HOH 378 B HOH 161 5 HOH HOH 379 B HOH 162 5 HOH HOH 380 B HOH 164 5 HOH HOH 381 B HOH 165 5 HOH HOH 382 B HOH 166 5 HOH HOH 383 B HOH 167 5 HOH HOH 384 B HOH 168 5 HOH HOH 385 B HOH 169 5 HOH HOH 386 B HOH 170 5 HOH HOH 387 B HOH 171 5 HOH HOH 388 B HOH 174 5 HOH HOH 389 B HOH 175 5 HOH HOH 390 B HOH 176 5 HOH HOH 391 B HOH 177 5 HOH HOH 392 B HOH 178 5 HOH HOH 393 B HOH 179 5 HOH HOH 394 B HOH 180 5 HOH HOH 395 B HOH 182 5 HOH HOH 396 B HOH 185 5 HOH HOH 397 B HOH 188 5 HOH HOH 398 B HOH 191 5 HOH HOH 399 B HOH 192 5 HOH HOH 400 B HOH 193 5 HOH HOH 401 B HOH 198 5 HOH HOH 402 B HOH 201 5 HOH HOH 403 B HOH 202 5 HOH HOH 404 B HOH 204 5 HOH HOH 405 B HOH 206 5 HOH HOH 406 B HOH 207 5 HOH HOH 407 B HOH 208 5 HOH HOH 408 B HOH 210 5 HOH HOH 409 B HOH 212 5 HOH HOH 410 B HOH 214 5 HOH HOH 411 B HOH 216 5 HOH HOH 412 B HOH 217 5 HOH HOH 413 B HOH 221 5 HOH HOH 414 B HOH 222 5 HOH HOH 415 B HOH 223 5 HOH HOH 416 B HOH 224 5 HOH HOH 417 B HOH 225 5 HOH HOH 418 B HOH 230 5 HOH HOH 419 B HOH 232 5 HOH HOH 420 B HOH 233 5 HOH HOH 421 B HOH 235 5 HOH HOH 422 B HOH 237 5 HOH HOH 423 B HOH 238 5 HOH HOH 424 B HOH 240 5 HOH HOH 425 B HOH 242 5 HOH HOH 426 B HOH 243 5 HOH HOH 427 B HOH 244 5 HOH HOH 428 B HOH 250 5 HOH HOH 429 B HOH 251 5 HOH HOH 430 B HOH 256 5 HOH HOH 431 B HOH 261 5 HOH HOH 432 B HOH 263 5 HOH HOH 433 B HOH 264 5 HOH HOH 434 B HOH 268 5 HOH HOH 435 B HOH 272 5 HOH HOH 436 B HOH 273 5 HOH HOH 437 B HOH 275 5 HOH HOH 438 B HOH 276 5 HOH HOH 439 B HOH 277 5 HOH HOH 440 B HOH 278 5 HOH HOH 441 B SER 0 n 1 SER 0 A MSE 1 n 2 MSE 1 A LYS 2 n 3 LYS 2 A LEU 3 n 4 LEU 3 A THR 4 n 5 THR 4 A ILE 5 n 6 ILE 5 A PRO 6 n 7 PRO 6 A GLU 7 n 8 GLU 7 A LEU 8 n 9 LEU 8 A SER 9 n 10 SER 9 A LEU 10 n 11 LEU 10 A VAL 11 n 12 VAL 11 A VAL 12 n 13 VAL 12 A LEU 13 n 14 LEU 13 A ILE 14 n 15 ILE 14 A GLY 15 n 16 GLY 15 A SER 16 n 17 SER 16 A SER 17 n 18 SER 17 A GLY 18 n 19 GLY 18 A SER 19 n 20 SER 19 A GLY 20 n 21 GLY 20 A LYS 21 n 22 LYS 21 A SER 22 n 23 SER 22 A THR 23 n 24 THR 23 A PHE 24 n 25 PHE 24 A ALA 25 n 26 ALA 25 A LYS 26 n 27 LYS 26 A LYS 27 n 28 LYS 27 A HIS 28 n 29 HIS 28 A PHE 29 n 30 PHE 29 A LYS 30 n 31 LYS 30 A PRO 31 n 32 PRO 31 A THR 32 n 33 THR 32 A GLU 33 n 34 GLU 33 A VAL 34 n 35 VAL 34 A ILE 35 n 36 ILE 35 A SER 36 n 37 SER 36 A SER 37 n 38 SER 37 A ASP 38 n 39 ASP 38 A PHE 39 n 40 PHE 39 A CYS 40 n 41 CYS 40 A ARG 41 n 42 ARG 41 A GLY 42 n 43 GLY 42 A LEU 43 n 44 LEU 43 A MSE 44 n 45 MSE 44 A SER 45 n 46 SER 45 A ASP 46 n 47 ASP 46 A ASP 47 n 48 ASP 47 A GLU 48 n 49 GLU 48 A ASN 49 n 50 ASN 49 A ASP 50 n 51 ASP 50 A GLN 51 n 52 GLN 51 A THR 52 n 53 THR 52 A VAL 53 n 54 VAL 53 A THR 54 n 55 THR 54 A GLY 55 n 56 GLY 55 A ALA 56 n 57 ALA 56 A ALA 57 n 58 ALA 57 A PHE 58 n 59 PHE 58 A ASP 59 n 60 ASP 59 A VAL 60 n 61 VAL 60 A LEU 61 n 62 LEU 61 A HIS 62 n 63 HIS 62 A TYR 63 n 64 TYR 63 A ILE 64 n 65 ILE 64 A VAL 65 n 66 VAL 65 A SER 66 n 67 SER 66 A LYS 67 n 68 LYS 67 A ARG 68 n 69 ARG 68 A LEU 69 n 70 LEU 69 A GLN 70 n 71 GLN 70 A LEU 71 n 72 LEU 71 A GLY 72 n 73 GLY 72 A LYS 73 n 74 LYS 73 A LEU 74 n 75 LEU 74 A THR 75 n 76 THR 75 A VAL 76 n 77 VAL 76 A VAL 77 n 78 VAL 77 A ASP 78 n 79 ASP 78 A ALA 79 n 80 ALA 79 A THR 80 n 81 THR 80 A ASN 81 n 82 ASN 81 A VAL 82 n 83 VAL 82 A GLN 83 n 84 GLN 83 A GLU 84 n 85 GLU 84 A SER 85 n 86 SER 85 A ALA 86 n 87 ALA 86 A ARG 87 n 88 ARG 87 A LYS 88 n 89 LYS 88 A PRO 89 n 90 PRO 89 A LEU 90 n 91 LEU 90 A ILE 91 n 92 ILE 91 A GLU 92 n 93 GLU 92 A ILE 93 n 94 ILE 93 A ALA 94 n 95 ALA 94 A LYS 95 n 96 LYS 95 A ASP 96 n 97 ASP 96 A TYR 97 n 98 TYR 97 A HIS 98 n 99 HIS 98 A CYS 99 n 100 CYS 99 A PHE 100 n 101 PHE 100 A PRO 101 n 102 PRO 101 A VAL 102 n 103 VAL 102 A ALA 103 n 104 ALA 103 A VAL 104 n 105 VAL 104 A VAL 105 n 106 VAL 105 A PHE 106 n 107 PHE 106 A ASN 107 n 108 ASN 107 A LEU 108 n 109 LEU 108 A PRO 109 n 110 PRO 109 A GLU 110 n 111 GLU 110 A LYS 111 n 112 LYS 111 A VAL 112 n 113 VAL 112 A CYS 113 n 114 CYS 113 A GLN 114 n 115 GLN 114 A GLU 115 n 116 GLU 115 A ARG 116 n 117 ARG 116 A ASN 117 n 118 ASN 117 A LYS 118 n 119 LYS 118 A ASN 119 n 120 ASN 119 A ARG 120 n 121 ARG 120 A THR 121 n 122 THR 121 A ASP 122 n 123 ASP 122 A ARG 123 n 124 ARG 123 A GLN 124 n 125 GLN 124 A VAL 125 n 126 VAL 125 A GLU 126 n 127 GLU 126 A GLU 127 n 128 GLU 127 A TYR 128 n 129 TYR 128 A VAL 129 n 130 VAL 129 A ILE 130 n 131 ILE 130 A ARG 131 n 132 ARG 131 A LYS 132 n 133 LYS 132 A HIS 133 n 134 HIS 133 A THR 134 n 135 THR 134 A GLN 135 n 136 GLN 135 A GLN 136 n 137 GLN 136 A MSE 137 n 138 MSE 137 A LYS 138 n 139 LYS 138 A LYS 139 n 140 LYS 139 A SER 140 n 141 SER 140 A ILE 141 n 142 ILE 141 A LYS 142 n 143 LYS 142 A GLY 143 n 144 GLY 143 A LEU 144 n 145 LEU 144 A GLN 145 n 146 GLN 145 A ARG 146 n 147 ARG 146 A GLU 147 n 148 GLU 147 A GLY 148 n 149 GLY 148 A PHE 149 n 150 PHE 149 A ARG 150 n 151 ARG 150 A TYR 151 n 152 TYR 151 A VAL 152 n 153 VAL 152 A TYR 153 n 154 TYR 153 A ILE 154 n 155 ILE 154 A LEU 155 n 156 LEU 155 A ASN 156 n 157 ASN 156 A SER 157 n 158 SER 157 A PRO 158 n 159 PRO 158 A GLU 159 n 160 GLU 159 A GLU 160 n 161 GLU 160 A VAL 161 n 162 VAL 161 A GLU 162 n 163 GLU 162 A GLU 163 n 164 GLU 163 A VAL 164 n 165 VAL 164 A VAL 165 n 166 VAL 165 A PHE 166 n 167 PHE 166 A GLU 167 n 168 GLU 167 A ARG 168 n 169 ARG 168 A GLN 169 n 170 GLN 169 A PRO 170 n 171 PRO 170 A SER 0 n 1 SER 0 B MSE 1 n 2 MSE 1 B LYS 2 n 3 LYS 2 B LEU 3 n 4 LEU 3 B THR 4 n 5 THR 4 B ILE 5 n 6 ILE 5 B PRO 6 n 7 PRO 6 B GLU 7 n 8 GLU 7 B LEU 8 n 9 LEU 8 B SER 9 n 10 SER 9 B LEU 10 n 11 LEU 10 B VAL 11 n 12 VAL 11 B VAL 12 n 13 VAL 12 B LEU 13 n 14 LEU 13 B ILE 14 n 15 ILE 14 B GLY 15 n 16 GLY 15 B SER 16 n 17 SER 16 B SER 17 n 18 SER 17 B GLY 18 n 19 GLY 18 B SER 19 n 20 SER 19 B GLY 20 n 21 GLY 20 B LYS 21 n 22 LYS 21 B SER 22 n 23 SER 22 B THR 23 n 24 THR 23 B PHE 24 n 25 PHE 24 B ALA 25 n 26 ALA 25 B LYS 26 n 27 LYS 26 B LYS 27 n 28 LYS 27 B HIS 28 n 29 HIS 28 B PHE 29 n 30 PHE 29 B LYS 30 n 31 LYS 30 B PRO 31 n 32 PRO 31 B THR 32 n 33 THR 32 B GLU 33 n 34 GLU 33 B VAL 34 n 35 VAL 34 B ILE 35 n 36 ILE 35 B SER 36 n 37 SER 36 B SER 37 n 38 SER 37 B ASP 38 n 39 ASP 38 B PHE 39 n 40 PHE 39 B CYS 40 n 41 CYS 40 B ARG 41 n 42 ARG 41 B GLY 42 n 43 GLY 42 B LEU 43 n 44 LEU 43 B MSE 44 n 45 MSE 44 B SER 45 n 46 SER 45 B ASP 46 n 47 ASP 46 B ASP 47 n 48 ASP 47 B GLU 48 n 49 GLU 48 B ASN 49 n 50 ASN 49 B ASP 50 n 51 ASP 50 B GLN 51 n 52 GLN 51 B THR 52 n 53 THR 52 B VAL 53 n 54 VAL 53 B THR 54 n 55 THR 54 B GLY 55 n 56 GLY 55 B ALA 56 n 57 ALA 56 B ALA 57 n 58 ALA 57 B PHE 58 n 59 PHE 58 B ASP 59 n 60 ASP 59 B VAL 60 n 61 VAL 60 B LEU 61 n 62 LEU 61 B HIS 62 n 63 HIS 62 B TYR 63 n 64 TYR 63 B ILE 64 n 65 ILE 64 B VAL 65 n 66 VAL 65 B SER 66 n 67 SER 66 B LYS 67 n 68 LYS 67 B ARG 68 n 69 ARG 68 B LEU 69 n 70 LEU 69 B GLN 70 n 71 GLN 70 B LEU 71 n 72 LEU 71 B GLY 72 n 73 GLY 72 B LYS 73 n 74 LYS 73 B LEU 74 n 75 LEU 74 B THR 75 n 76 THR 75 B VAL 76 n 77 VAL 76 B VAL 77 n 78 VAL 77 B ASP 78 n 79 ASP 78 B ALA 79 n 80 ALA 79 B THR 80 n 81 THR 80 B ASN 81 n 82 ASN 81 B VAL 82 n 83 VAL 82 B GLN 83 n 84 GLN 83 B GLU 84 n 85 GLU 84 B SER 85 n 86 SER 85 B ALA 86 n 87 ALA 86 B ARG 87 n 88 ARG 87 B LYS 88 n 89 LYS 88 B PRO 89 n 90 PRO 89 B LEU 90 n 91 LEU 90 B ILE 91 n 92 ILE 91 B GLU 92 n 93 GLU 92 B ILE 93 n 94 ILE 93 B ALA 94 n 95 ALA 94 B LYS 95 n 96 LYS 95 B ASP 96 n 97 ASP 96 B TYR 97 n 98 TYR 97 B HIS 98 n 99 HIS 98 B CYS 99 n 100 CYS 99 B PHE 100 n 101 PHE 100 B PRO 101 n 102 PRO 101 B VAL 102 n 103 VAL 102 B ALA 103 n 104 ALA 103 B VAL 104 n 105 VAL 104 B VAL 105 n 106 VAL 105 B PHE 106 n 107 PHE 106 B ASN 107 n 108 ASN 107 B LEU 108 n 109 LEU 108 B PRO 109 n 110 PRO 109 B GLU 110 n 111 GLU 110 B LYS 111 n 112 LYS 111 B VAL 112 n 113 VAL 112 B CYS 113 n 114 CYS 113 B GLN 114 n 115 GLN 114 B GLU 115 n 116 GLU 115 B ARG 116 n 117 ARG 116 B ASN 117 n 118 ASN 117 B LYS 118 n 119 LYS 118 B ASN 119 n 120 ASN 119 B ARG 120 n 121 ARG 120 B THR 121 n 122 THR 121 B ASP 122 n 123 ASP 122 B ARG 123 n 124 ARG 123 B GLN 124 n 125 GLN 124 B VAL 125 n 126 VAL 125 B GLU 126 n 127 GLU 126 B GLU 127 n 128 GLU 127 B TYR 128 n 129 TYR 128 B VAL 129 n 130 VAL 129 B ILE 130 n 131 ILE 130 B ARG 131 n 132 ARG 131 B LYS 132 n 133 LYS 132 B HIS 133 n 134 HIS 133 B THR 134 n 135 THR 134 B GLN 135 n 136 GLN 135 B GLN 136 n 137 GLN 136 B MSE 137 n 138 MSE 137 B LYS 138 n 139 LYS 138 B LYS 139 n 140 LYS 139 B SER 140 n 141 SER 140 B ILE 141 n 142 ILE 141 B LYS 142 n 143 LYS 142 B GLY 143 n 144 GLY 143 B LEU 144 n 145 LEU 144 B GLN 145 n 146 GLN 145 B ARG 146 n 147 ARG 146 B GLU 147 n 148 GLU 147 B GLY 148 n 149 GLY 148 B PHE 149 n 150 PHE 149 B ARG 150 n 151 ARG 150 B TYR 151 n 152 TYR 151 B VAL 152 n 153 VAL 152 B TYR 153 n 154 TYR 153 B ILE 154 n 155 ILE 154 B LEU 155 n 156 LEU 155 B ASN 156 n 157 ASN 156 B SER 157 n 158 SER 157 B PRO 158 n 159 PRO 158 B GLU 159 n 160 GLU 159 B GLU 160 n 161 GLU 160 B VAL 161 n 162 VAL 161 B GLU 162 n 163 GLU 162 B GLU 163 n 164 GLU 163 B VAL 164 n 165 VAL 164 B VAL 165 n 166 VAL 165 B PHE 166 n 167 PHE 166 B GLU 167 n 168 GLU 167 B ARG 168 n 169 ARG 168 B GLN 169 n 170 GLN 169 B PRO 170 n 171 PRO 170 B author_defined_assembly 2 dimeric 3670 -48 16450 A DTP 202 D O3G DTP 1_555 A MG 201 C MG MG 1_555 A DTP 202 D O2B DTP 1_555 88.6 A DTP 202 D O3G DTP 1_555 A MG 201 C MG MG 1_555 A SER 22 A OG SER 23 1_555 173.6 A DTP 202 D O2B DTP 1_555 A MG 201 C MG MG 1_555 A SER 22 A OG SER 23 1_555 89.5 A DTP 202 D O3G DTP 1_555 A MG 201 C MG MG 1_555 A HOH 303 H O HOH 1_555 90.1 A DTP 202 D O2B DTP 1_555 A MG 201 C MG MG 1_555 A HOH 303 H O HOH 1_555 178.1 A SER 22 A OG SER 23 1_555 A MG 201 C MG MG 1_555 A HOH 303 H O HOH 1_555 91.7 A DTP 202 D O3G DTP 1_555 A MG 201 C MG MG 1_555 A HOH 301 H O HOH 1_555 85.9 A DTP 202 D O2B DTP 1_555 A MG 201 C MG MG 1_555 A HOH 301 H O HOH 1_555 94.6 A SER 22 A OG SER 23 1_555 A MG 201 C MG MG 1_555 A HOH 301 H O HOH 1_555 88.2 A HOH 303 H O HOH 1_555 A MG 201 C MG MG 1_555 A HOH 301 H O HOH 1_555 83.8 A DTP 202 D O3G DTP 1_555 A MG 201 C MG MG 1_555 A HOH 304 H O HOH 1_555 91.7 A DTP 202 D O2B DTP 1_555 A MG 201 C MG MG 1_555 A HOH 304 H O HOH 1_555 87.7 A SER 22 A OG SER 23 1_555 A MG 201 C MG MG 1_555 A HOH 304 H O HOH 1_555 94.3 A HOH 303 H O HOH 1_555 A MG 201 C MG MG 1_555 A HOH 304 H O HOH 1_555 93.8 A HOH 301 H O HOH 1_555 A MG 201 C MG MG 1_555 A HOH 304 H O HOH 1_555 176.6 B DTP 202 F O3G DTP 1_555 B MG 201 E MG MG 1_555 B DTP 202 F O1B DTP 1_555 96.2 B DTP 202 F O3G DTP 1_555 B MG 201 E MG MG 1_555 B SER 22 B OG SER 23 1_555 172.4 B DTP 202 F O1B DTP 1_555 B MG 201 E MG MG 1_555 B SER 22 B OG SER 23 1_555 89.4 B DTP 202 F O3G DTP 1_555 B MG 201 E MG MG 1_555 B HOH 305 I O HOH 1_555 91.6 B DTP 202 F O1B DTP 1_555 B MG 201 E MG MG 1_555 B HOH 305 I O HOH 1_555 91.5 B SER 22 B OG SER 23 1_555 B MG 201 E MG MG 1_555 B HOH 305 I O HOH 1_555 93.4 B DTP 202 F O3G DTP 1_555 B MG 201 E MG MG 1_555 B HOH 303 I O HOH 1_555 91.5 B DTP 202 F O1B DTP 1_555 B MG 201 E MG MG 1_555 B HOH 303 I O HOH 1_555 93.0 B SER 22 B OG SER 23 1_555 B MG 201 E MG MG 1_555 B HOH 303 I O HOH 1_555 83.1 B HOH 305 I O HOH 1_555 B MG 201 E MG MG 1_555 B HOH 303 I O HOH 1_555 174.2 B DTP 202 F O3G DTP 1_555 B MG 201 E MG MG 1_555 B HOH 306 I O HOH 1_555 89.3 B DTP 202 F O1B DTP 1_555 B MG 201 E MG MG 1_555 B HOH 306 I O HOH 1_555 173.4 B SER 22 B OG SER 23 1_555 B MG 201 E MG MG 1_555 B HOH 306 I O HOH 1_555 84.8 B HOH 305 I O HOH 1_555 B MG 201 E MG MG 1_555 B HOH 306 I O HOH 1_555 92.1 B HOH 303 I O HOH 1_555 B MG 201 E MG MG 1_555 B HOH 306 I O HOH 1_555 83.1 B HOH 355 I O HOH 1_555 B NA 203 G NA NA 1_555 B HOH 352 I O HOH 1_555 96.8 B HOH 355 I O HOH 1_555 B NA 203 G NA NA 1_555 B HOH 388 I O HOH 1_555 137.6 B HOH 352 I O HOH 1_555 B NA 203 G NA NA 1_555 B HOH 388 I O HOH 1_555 112.9 B HOH 355 I O HOH 1_555 B NA 203 G NA NA 1_555 B HOH 372 I O HOH 1_555 81.8 B HOH 352 I O HOH 1_555 B NA 203 G NA NA 1_555 B HOH 372 I O HOH 1_555 72.8 B HOH 388 I O HOH 1_555 B NA 203 G NA NA 1_555 B HOH 372 I O HOH 1_555 79.3 A MSE 1 SELENOMETHIONINE A MSE 2 MET A MSE 44 SELENOMETHIONINE A MSE 45 MET A MSE 137 SELENOMETHIONINE A MSE 138 MET B MSE 1 SELENOMETHIONINE B MSE 2 MET B MSE 44 SELENOMETHIONINE B MSE 45 MET B MSE 137 SELENOMETHIONINE B MSE 138 MET 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N LEU 3 A N LEU 4 A O GLU 167 A O GLU 168 A N ILE 35 A N ILE 36 A O VAL 76 A O VAL 77 A O VAL 77 A O VAL 78 A N VAL 11 A N VAL 12 A N ILE 14 A N ILE 15 A O PHE 106 A O PHE 107 A N VAL 105 A N VAL 106 A O TYR 153 A O TYR 154 B N ILE 5 B N ILE 6 B O GLU 167 B O GLU 168 B N ILE 35 B N ILE 36 B O VAL 76 B O VAL 77 B O VAL 77 B O VAL 78 B N VAL 11 B N VAL 12 B N VAL 12 B N VAL 13 B O VAL 102 B O VAL 103 B N VAL 105 B N VAL 106 B O LEU 155 B O LEU 156 1 B B OE1 O GLU HOH 167 418 2.13 1 B B O O HOH HOH 434 438 2.19 1 A A OD1 O ASP HOH 96 394 2.18 1_555 3_656 1 B B NZ O LYS HOH 118 439 2.18 A 1_555 1_455 1 B ASN 49 -109.98 40.66 1 B GLN 169 -104.72 -64.03 0.2176 0.1538 0.1590 2.01 44.538 1916 24577 24307 7.88 98.07 0.19 1 1.35 Direct refinement 21.30 0.90 1.11 ML FLAT BULK SOLVENT MODEL 2.01 44.538 279 3080 63 0 2738 0.010 2876 1.273 3894 16.235 1122 0.078 437 0.006 492 0.2544 0.1513 2.0630 106 1277 80.00 0.2006 0.1487 2.1188 135 1573 99.00 0.2172 0.1382 2.1812 135 1596 99.00 0.1974 0.1390 2.2516 138 1596 99.00 0.2158 0.1449 2.3320 136 1568 99.00 0.2602 0.1640 2.4254 136 1604 100.00 0.2686 0.1625 2.5358 140 1627 99.00 0.2463 0.1679 2.6695 139 1621 99.00 0.2286 0.1545 2.8367 138 1604 100.00 0.2055 0.1613 3.0557 139 1620 99.00 0.2218 0.1561 3.3631 140 1630 100.00 0.2047 0.1434 3.8495 141 1647 100.00 0.1847 0.1333 4.8490 143 1668 100.00 0.2271 0.1814 44.5490 150 1760 99.00 2.01 45.5 4JT4 24436 24363 -999 -999 1 99.7 2.01 2.07 1 99.2 2.07 45.5 1 99.7 data collection CBASS model building PHENIX refinement PHENIX (phenix.refine: 1.8.1_1168) data reduction MOSFLM data scaling SCALA phasing PHENIX Metallophosphoesterase (E.C.2.7.1.78) Structure of Clostridium thermocellum polynucleotide kinase bound to dATP 1 N N 1 N N 2 N N 3 N N 2 N N 3 N N 4 N N 5 N N 5 N N A GLY 20 A GLY 21 HELX_P A PHE 29 A PHE 30 1 1 10 A LYS 30 A LYS 31 HELX_P A THR 32 A THR 33 5 2 3 A SER 37 A SER 38 HELX_P A SER 45 A SER 46 1 3 9 A ASP 50 A ASP 51 HELX_P A THR 52 A THR 53 5 4 3 A VAL 53 A VAL 54 HELX_P A LEU 71 A LEU 72 1 5 19 A GLN 83 A GLN 84 HELX_P A TYR 97 A TYR 98 1 6 15 A PRO 109 A PRO 110 HELX_P A ASN 119 A ASN 120 1 7 11 A GLU 126 A GLU 127 HELX_P A ILE 141 A ILE 142 1 8 16 A GLY 143 A GLY 144 HELX_P A GLY 148 A GLY 149 1 9 6 A SER 157 A SER 158 HELX_P A GLU 163 A GLU 164 1 10 7 B GLY 20 B GLY 21 HELX_P B PHE 29 B PHE 30 1 11 10 B LYS 30 B LYS 31 HELX_P B THR 32 B THR 33 5 12 3 B SER 37 B SER 38 HELX_P B SER 45 B SER 46 1 13 9 B VAL 53 B VAL 54 HELX_P B LEU 71 B LEU 72 1 14 19 B GLN 83 B GLN 84 HELX_P B TYR 97 B TYR 98 1 15 15 B PRO 109 B PRO 110 HELX_P B ARG 120 B ARG 121 1 16 12 B GLU 126 B GLU 127 HELX_P B ILE 141 B ILE 142 1 17 16 B GLY 143 B GLY 144 HELX_P B GLY 148 B GLY 149 1 18 6 B SER 157 B SER 158 HELX_P B GLU 163 B GLU 164 1 19 7 covale 1.329 A SER 0 A C SER 1 1_555 A MSE 1 A N MSE 2 1_555 covale 1.325 A MSE 1 A C MSE 2 1_555 A LYS 2 A N LYS 3 1_555 covale 1.330 A LEU 43 A C LEU 44 1_555 A MSE 44 A N MSE 45 1_555 covale 1.326 A MSE 44 A C MSE 45 1_555 A SER 45 A N SER 46 1_555 covale 1.329 A GLN 136 A C GLN 137 1_555 A MSE 137 A N MSE 138 1_555 covale 1.331 A MSE 137 A C MSE 138 1_555 A LYS 138 A N LYS 139 1_555 covale 1.328 B SER 0 B C SER 1 1_555 B MSE 1 B N MSE 2 1_555 covale 1.329 B MSE 1 B C MSE 2 1_555 B LYS 2 B N LYS 3 1_555 covale 1.325 B LEU 43 B C LEU 44 1_555 B MSE 44 B N MSE 45 1_555 covale 1.325 B MSE 44 B C MSE 45 1_555 B SER 45 B N SER 46 1_555 covale 1.329 B GLN 136 B C GLN 137 1_555 B MSE 137 B N MSE 138 1_555 covale 1.322 B MSE 137 B C MSE 138 1_555 B LYS 138 B N LYS 139 1_555 metalc 1.911 A MG 201 C MG MG 1_555 A DTP 202 D O3G DTP 1_555 metalc 1.963 B MG 201 E MG MG 1_555 B DTP 202 F O3G DTP 1_555 metalc 1.976 B MG 201 E MG MG 1_555 B DTP 202 F O1B DTP 1_555 metalc 2.040 A MG 201 C MG MG 1_555 A DTP 202 D O2B DTP 1_555 metalc 2.070 A SER 22 A OG SER 23 1_555 A MG 201 C MG MG 1_555 metalc 2.173 B SER 22 B OG SER 23 1_555 B MG 201 E MG MG 1_555 metalc 2.035 A MG 201 C MG MG 1_555 A HOH 303 H O HOH 1_555 metalc 2.098 B MG 201 E MG MG 1_555 B HOH 305 I O HOH 1_555 metalc 2.111 B MG 201 E MG MG 1_555 B HOH 303 I O HOH 1_555 metalc 2.128 A MG 201 C MG MG 1_555 A HOH 301 H O HOH 1_555 metalc 2.170 A MG 201 C MG MG 1_555 A HOH 304 H O HOH 1_555 metalc 2.259 B MG 201 E MG MG 1_555 B HOH 306 I O HOH 1_555 metalc 3.001 B NA 203 G NA NA 1_555 B HOH 355 I O HOH 1_555 metalc 3.053 B NA 203 G NA NA 1_555 B HOH 352 I O HOH 1_555 metalc 3.095 B NA 203 G NA NA 1_555 B HOH 388 I O HOH 1_555 metalc 3.163 B NA 203 G NA NA 1_555 B HOH 372 I O HOH 1_555 TRANSFERASE RNA repair, P-loop phosphotransferase, polynucleotide kinase, Transferase A3DJ38_CLOTH UNP 1 1 A3DJ38 MKLTIPELSLVVLIGSSGSGKSTFAKKHFKPTEVISSDFCRGLVSDDENDQTVTGAAFDVLHYIVSKRLQLGKLTVVDAT NVQESARKPLIEIAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQLKKSIKGLQREGFRYVYILNSPEE VEEVVFERQP 1 170 4JT4 1 170 A3DJ38 A 1 2 171 1 170 4JT4 1 170 A3DJ38 B 1 2 171 1 EXPRESSION TAG SER 0 4JT4 A A3DJ38 UNP 1 1 VAL ENGINEERED MUTATION MSE 44 4JT4 A A3DJ38 UNP 44 45 1 LEU ENGINEERED MUTATION MSE 137 4JT4 A A3DJ38 UNP 137 138 2 EXPRESSION TAG SER 0 4JT4 B A3DJ38 UNP 1 2 VAL ENGINEERED MUTATION MSE 44 4JT4 B A3DJ38 UNP 44 45 2 LEU ENGINEERED MUTATION MSE 137 4JT4 B A3DJ38 UNP 137 138 2 5 2 5 parallel parallel parallel parallel parallel parallel parallel parallel parallel parallel A MSE 1 A MSE 2 A PRO 6 A PRO 7 A VAL 164 A VAL 165 A GLN 169 A GLN 170 A VAL 34 A VAL 35 A SER 36 A SER 37 A THR 75 A THR 76 A ASP 78 A ASP 79 A SER 9 A SER 10 A ILE 14 A ILE 15 A PHE 100 A PHE 101 A PHE 106 A PHE 107 A TYR 151 A TYR 152 A LEU 155 A LEU 156 B MSE 1 B MSE 2 B ILE 5 B ILE 6 B VAL 164 B VAL 165 B ARG 168 B ARG 169 B VAL 34 B VAL 35 B SER 36 B SER 37 B THR 75 B THR 76 B ASP 78 B ASP 79 B SER 9 B SER 10 B ILE 14 B ILE 15 B PHE 100 B PHE 101 B PHE 106 B PHE 107 B TYR 151 B TYR 152 B LEU 155 B LEU 156 BINDING SITE FOR RESIDUE MG A 201 Software 5 BINDING SITE FOR RESIDUE DTP A 202 Software 22 BINDING SITE FOR RESIDUE MG B 201 Software 5 BINDING SITE FOR RESIDUE DTP B 202 Software 21 BINDING SITE FOR RESIDUE NA B 203 Software 4 A SER 22 A SER 23 5 1_555 A DTP 202 D DTP 5 1_555 A HOH 301 H HOH 5 1_555 A HOH 303 H HOH 5 1_555 A HOH 304 H HOH 5 1_555 A SER 16 A SER 17 22 1_555 A SER 17 A SER 18 22 1_555 A GLY 18 A GLY 19 22 1_555 A SER 19 A SER 20 22 1_555 A GLY 20 A GLY 21 22 1_555 A LYS 21 A LYS 22 22 1_555 A SER 22 A SER 23 22 1_555 A THR 23 A THR 24 22 1_555 A ARG 116 A ARG 117 22 1_555 A ARG 120 A ARG 121 22 1_555 A ARG 123 A ARG 124 22 1_555 A MG 201 C MG 22 1_555 A HOH 301 H HOH 22 1_555 A HOH 303 H HOH 22 1_555 A HOH 304 H HOH 22 1_555 A HOH 341 H HOH 22 1_555 A HOH 348 H HOH 22 1_555 A HOH 368 H HOH 22 1_555 A HOH 375 H HOH 22 1_555 A HOH 377 H HOH 22 1_555 A HOH 391 H HOH 22 1_555 A HOH 395 H HOH 22 1_555 B SER 22 B SER 23 5 1_555 B DTP 202 F DTP 5 1_555 B HOH 303 I HOH 5 1_555 B HOH 305 I HOH 5 1_555 B HOH 306 I HOH 5 1_555 B SER 16 B SER 17 21 1_555 B SER 17 B SER 18 21 1_555 B GLY 18 B GLY 19 21 1_555 B SER 19 B SER 20 21 1_555 B GLY 20 B GLY 21 21 1_555 B LYS 21 B LYS 22 21 1_555 B SER 22 B SER 23 21 1_555 B THR 23 B THR 24 21 1_555 B ARG 116 B ARG 117 21 1_555 B ARG 120 B ARG 121 21 1_555 B MG 201 E MG 21 1_555 B HOH 303 I HOH 21 1_555 B HOH 305 I HOH 21 1_555 B HOH 306 I HOH 21 1_555 B HOH 330 I HOH 21 1_555 B HOH 338 I HOH 21 1_555 B HOH 344 I HOH 21 1_555 B HOH 347 I HOH 21 1_555 B HOH 355 I HOH 21 1_555 B HOH 367 I HOH 21 1_555 B HOH 424 I HOH 21 1_555 B PHE 24 B PHE 25 4 1_555 B HOH 352 I HOH 4 1_555 B HOH 355 I HOH 4 1_555 B HOH 388 I HOH 4 1_555 19 P 21 21 21