0.008301
0.004793
0.000000
0.000000
0.009585
0.000000
0.000000
0.000000
0.022488
0.00000
0.00000
0.00000
Dai, H.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
6
90.00
90.00
120.00
120.464
120.464
44.468
C15 H21 N5 O3 S2
383.489
4-(4-{2-[(methylsulfonyl)amino]ethyl}piperidin-1-yl)thieno[3,2-d]pyrimidine-6-carboxamide
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C3 H8 O3
92.094
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Na 1
22.990
SODIUM ION
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Zn 2
65.409
ZINC ION
non-polymer
N
1
N
C
N
2
N
S
N
3
N
N
N
4
N
C
N
5
N
C
N
6
N
C
N
7
N
C
N
8
N
C
N
9
N
N
Y
10
N
C
Y
11
N
C
Y
12
N
C
Y
13
N
C
Y
14
N
C
N
15
N
C
N
16
N
N
N
17
N
O
Y
18
N
S
Y
19
N
N
Y
20
N
C
Y
21
N
N
N
22
N
C
N
23
N
C
N
24
N
O
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
H
N
42
N
H
N
43
N
H
N
44
N
H
N
45
N
H
N
46
N
H
N
47
N
N
N
48
S
C
N
49
N
C
N
50
N
O
N
51
N
C
N
52
N
O
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
N
N
61
S
C
N
62
N
C
N
63
N
O
N
64
N
C
N
65
N
C
N
66
N
C
N
67
N
N
N
68
N
C
N
69
N
N
N
70
N
N
N
71
N
O
N
72
N
H
N
73
N
H
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
H
N
79
N
H
N
80
N
H
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
N
N
88
S
C
N
89
N
C
N
90
N
O
N
91
N
C
N
92
N
C
N
93
N
O
N
94
N
N
N
95
N
O
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
N
N
105
S
C
N
106
N
C
N
107
N
O
N
108
N
C
N
109
N
C
N
110
N
O
N
111
N
O
N
112
N
O
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
N
N
121
R
C
N
122
N
C
N
123
N
O
N
124
N
C
N
125
N
S
N
126
N
O
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
N
N
135
S
C
N
136
N
C
N
137
N
O
N
138
N
C
N
139
N
C
N
140
N
C
N
141
N
O
N
142
N
N
N
143
N
O
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
N
N
155
S
C
N
156
N
C
N
157
N
O
N
158
N
C
N
159
N
C
N
160
N
C
N
161
N
O
N
162
N
O
N
163
N
O
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
N
N
174
N
C
N
175
N
C
N
176
N
O
N
177
N
O
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
C
N
184
N
O
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
O
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
N
N
198
S
C
N
199
N
C
N
200
N
O
N
201
N
C
Y
202
N
C
Y
203
N
N
Y
204
N
C
Y
205
N
C
Y
206
N
N
N
207
N
O
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
O
N
219
N
H
N
220
N
H
N
221
N
N
N
222
S
C
N
223
N
C
N
224
N
O
N
225
S
C
N
226
N
C
N
227
N
C
N
228
N
C
N
229
N
O
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
N
N
244
S
C
N
245
N
C
N
246
N
O
N
247
N
C
N
248
N
C
N
249
N
C
N
250
N
C
N
251
N
O
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
N
N
266
S
C
N
267
N
C
N
268
N
O
N
269
N
C
N
270
N
C
N
271
N
C
N
272
N
C
N
273
N
N
N
274
N
O
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
N
N
291
S
C
N
292
N
C
N
293
N
O
N
294
N
C
N
295
N
C
N
296
N
S
N
297
N
C
N
298
N
O
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
NA
N
311
N
N
N
312
S
C
N
313
N
C
N
314
N
O
N
315
N
C
Y
316
N
C
Y
317
N
C
Y
318
N
C
Y
319
N
C
Y
320
N
C
Y
321
N
C
N
322
N
O
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
N
N
335
S
C
N
336
N
C
N
337
N
O
N
338
N
C
N
339
N
C
N
340
N
C
N
341
N
O
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
N
N
352
S
C
N
353
N
C
N
354
N
O
N
355
N
C
N
356
N
O
N
357
N
O
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
N
N
366
S
C
N
367
N
C
N
368
N
O
N
369
R
C
N
370
N
O
N
371
N
C
N
372
N
O
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
N
N
383
S
C
N
384
N
C
N
385
N
O
N
386
N
C
Y
387
N
C
Y
388
N
C
Y
389
N
C
Y
390
N
N
Y
391
N
C
Y
392
N
C
Y
393
N
C
Y
394
N
C
Y
395
N
C
N
396
N
O
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
N
N
410
S
C
N
411
N
C
N
412
N
O
N
413
N
C
Y
414
N
C
Y
415
N
C
Y
416
N
C
Y
417
N
C
Y
418
N
C
Y
419
N
C
N
420
N
O
N
421
N
O
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
N
N
434
S
C
N
435
N
C
N
436
N
O
N
437
N
C
N
438
N
C
N
439
N
C
N
440
N
O
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
H
N
450
N
H
N
451
N
H
N
452
N
ZN
N
1
N
doub
N
2
N
doub
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
doub
Y
16
N
sing
Y
17
N
sing
Y
18
N
doub
Y
19
N
sing
Y
20
N
sing
N
21
N
sing
N
22
N
sing
Y
23
N
doub
Y
24
N
doub
Y
25
N
sing
Y
26
N
doub
Y
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
doub
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
doub
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
doub
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
doub
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
doub
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
doub
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
doub
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
doub
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
doub
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
doub
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
doub
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
doub
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
doub
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
doub
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
Y
201
N
sing
Y
202
N
doub
Y
203
N
doub
N
204
N
sing
Y
205
N
sing
N
206
N
sing
Y
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
doub
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
doub
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
doub
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
doub
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
doub
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
Y
309
N
doub
Y
310
N
sing
Y
311
N
sing
N
312
N
sing
Y
313
N
doub
N
314
N
sing
Y
315
N
doub
N
316
N
sing
Y
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
doub
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
doub
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
doub
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
doub
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
Y
378
N
doub
Y
379
N
sing
Y
380
N
sing
N
381
N
sing
Y
382
N
doub
Y
383
N
sing
Y
384
N
sing
N
385
N
sing
Y
386
N
sing
Y
387
N
doub
N
388
N
sing
Y
389
N
doub
N
390
N
sing
Y
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
doub
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
Y
406
N
doub
Y
407
N
sing
Y
408
N
sing
N
409
N
sing
Y
410
N
doub
N
411
N
sing
Y
412
N
doub
N
413
N
sing
Y
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
doub
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
US
J.Med.Chem.
JMCMAR
0151
0022-2623
56
3666
3679
10.1021/jm400204k
23570514
Discovery of Thieno[3,2-d]pyrimidine-6-carboxamides as Potent Inhibitors of SIRT1, SIRT2, and SIRT3.
2013
10.2210/pdb4jt9/pdb
pdb_00004jt9
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
SINGLE WAVELENGTH
M
x-ray
1
1.0
BL17U
SSRF
SYNCHROTRON
SSRF BEAMLINE BL17U
31612.348
NAD-dependent protein deacetylase sirtuin-3, mitochondrial
3.5.1.-
UNP residues 118-399
1
man
polymer
65.409
ZINC ION
1
syn
non-polymer
383.489
4-(4-{2-[(methylsulfonyl)amino]ethyl}piperidin-1-yl)thieno[3,2-d]pyrimidine-6-carboxamide
1
syn
non-polymer
92.094
GLYCEROL
2
syn
non-polymer
22.990
SODIUM ION
1
syn
non-polymer
18.015
water
191
nat
water
hSIRT3, Regulatory protein SIR2 homolog 3, SIR2-like protein 3
no
no
SNASDKGKLSLQDVAELIRARACQRVVVMVGAGISTPSGIPDFRSPGSGLYSNLQQYDLPYPEAIFELPFFFHNPKPFFT
LAKELYPGNYKPNVTHYFLRLLHDKGLLLRLYTQNIDGLERVSGIPASKLVEAHGTFASATCTVCQRPFPGEDIRADVMA
DRVPRCPVCTGVVKPDIVFFGEPLPQRFLLHVVDFPMADLLLILGTSLEVEPFASLTEAVRSSVPRLLINRDLVGPLAWH
PRSRDVAQLGDVVHGVESLVELLGWTEEMRDLVQRETGKLDGPDK
SNASDKGKLSLQDVAELIRARACQRVVVMVGAGISTPSGIPDFRSPGSGLYSNLQQYDLPYPEAIFELPFFFHNPKPFFT
LAKELYPGNYKPNVTHYFLRLLHDKGLLLRLYTQNIDGLERVSGIPASKLVEAHGTFASATCTVCQRPFPGEDIRADVMA
DRVPRCPVCTGVVKPDIVFFGEPLPQRFLLHVVDFPMADLLLILGTSLEVEPFASLTEAVRSSVPRLLINRDLVGPLAWH
PRSRDVAQLGDVVHGVESLVELLGWTEEMRDLVQRETGKLDGPDK
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
sample
SIRT3, SIR2L3
9606
Homo sapiens
562
Escherichia coli
1
2.95
58.25
VAPOR DIFFUSION, HANGING DROP
VAPOR DIFFUSION, HANGING DROP
chem_comp_atom
chem_comp_bond
database_2
pdbx_struct_conn_angle
struct_conn
struct_ref_seq_dif
struct_site
repository
Initial release
Database references
Data collection
Database references
Derived calculations
1
0
2013-04-24
1
1
2013-07-03
1
2
2024-02-28
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr2_auth_comp_id
_pdbx_struct_conn_angle.ptnr2_auth_seq_id
_pdbx_struct_conn_angle.ptnr2_label_asym_id
_pdbx_struct_conn_angle.ptnr2_label_atom_id
_pdbx_struct_conn_angle.ptnr2_label_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
RCSB
2013-03-22
REL
REL
ZN
ZINC ION
1NS
4-(4-{2-[(methylsulfonyl)amino]ethyl}piperidin-1-yl)thieno[3,2-d]pyrimidine-6-carboxamide
GOL
GLYCEROL
NA
SODIUM ION
HOH
water
ZN
1
2
ZN
ZN
401
A
1NS
1
3
1NS
1NS
402
A
GOL
1
4
GOL
GOL
403
A
GOL
2
4
GOL
GOL
404
A
NA
1
5
NA
NA
405
A
HOH
1
6
HOH
HOH
501
A
HOH
2
6
HOH
HOH
502
A
HOH
3
6
HOH
HOH
503
A
HOH
4
6
HOH
HOH
504
A
HOH
5
6
HOH
HOH
505
A
HOH
6
6
HOH
HOH
506
A
HOH
7
6
HOH
HOH
507
A
HOH
8
6
HOH
HOH
508
A
HOH
9
6
HOH
HOH
509
A
HOH
10
6
HOH
HOH
510
A
HOH
11
6
HOH
HOH
511
A
HOH
12
6
HOH
HOH
512
A
HOH
13
6
HOH
HOH
513
A
HOH
14
6
HOH
HOH
514
A
HOH
15
6
HOH
HOH
515
A
HOH
16
6
HOH
HOH
516
A
HOH
17
6
HOH
HOH
517
A
HOH
18
6
HOH
HOH
518
A
HOH
19
6
HOH
HOH
519
A
HOH
20
6
HOH
HOH
520
A
HOH
21
6
HOH
HOH
521
A
HOH
22
6
HOH
HOH
522
A
HOH
23
6
HOH
HOH
523
A
HOH
24
6
HOH
HOH
524
A
HOH
25
6
HOH
HOH
525
A
HOH
26
6
HOH
HOH
526
A
HOH
27
6
HOH
HOH
527
A
HOH
28
6
HOH
HOH
528
A
HOH
29
6
HOH
HOH
529
A
HOH
30
6
HOH
HOH
530
A
HOH
31
6
HOH
HOH
531
A
HOH
32
6
HOH
HOH
532
A
HOH
33
6
HOH
HOH
533
A
HOH
34
6
HOH
HOH
534
A
HOH
35
6
HOH
HOH
535
A
HOH
36
6
HOH
HOH
536
A
HOH
37
6
HOH
HOH
537
A
HOH
38
6
HOH
HOH
538
A
HOH
39
6
HOH
HOH
539
A
HOH
40
6
HOH
HOH
540
A
HOH
41
6
HOH
HOH
541
A
HOH
42
6
HOH
HOH
542
A
HOH
43
6
HOH
HOH
543
A
HOH
44
6
HOH
HOH
544
A
HOH
45
6
HOH
HOH
545
A
HOH
46
6
HOH
HOH
546
A
HOH
47
6
HOH
HOH
547
A
HOH
48
6
HOH
HOH
548
A
HOH
49
6
HOH
HOH
549
A
HOH
50
6
HOH
HOH
550
A
HOH
51
6
HOH
HOH
551
A
HOH
52
6
HOH
HOH
552
A
HOH
53
6
HOH
HOH
553
A
HOH
54
6
HOH
HOH
554
A
HOH
55
6
HOH
HOH
555
A
HOH
56
6
HOH
HOH
556
A
HOH
57
6
HOH
HOH
557
A
HOH
58
6
HOH
HOH
558
A
HOH
59
6
HOH
HOH
559
A
HOH
60
6
HOH
HOH
560
A
HOH
61
6
HOH
HOH
561
A
HOH
62
6
HOH
HOH
562
A
HOH
63
6
HOH
HOH
563
A
HOH
64
6
HOH
HOH
564
A
HOH
65
6
HOH
HOH
565
A
HOH
66
6
HOH
HOH
566
A
HOH
67
6
HOH
HOH
567
A
HOH
68
6
HOH
HOH
568
A
HOH
69
6
HOH
HOH
569
A
HOH
70
6
HOH
HOH
570
A
HOH
71
6
HOH
HOH
571
A
HOH
72
6
HOH
HOH
572
A
HOH
73
6
HOH
HOH
573
A
HOH
74
6
HOH
HOH
574
A
HOH
75
6
HOH
HOH
575
A
HOH
76
6
HOH
HOH
576
A
HOH
77
6
HOH
HOH
577
A
HOH
78
6
HOH
HOH
578
A
HOH
79
6
HOH
HOH
579
A
HOH
80
6
HOH
HOH
580
A
HOH
81
6
HOH
HOH
581
A
HOH
82
6
HOH
HOH
582
A
HOH
83
6
HOH
HOH
583
A
HOH
84
6
HOH
HOH
584
A
HOH
85
6
HOH
HOH
585
A
HOH
86
6
HOH
HOH
586
A
HOH
87
6
HOH
HOH
587
A
HOH
88
6
HOH
HOH
588
A
HOH
89
6
HOH
HOH
589
A
HOH
90
6
HOH
HOH
590
A
HOH
91
6
HOH
HOH
591
A
HOH
92
6
HOH
HOH
592
A
HOH
93
6
HOH
HOH
593
A
HOH
94
6
HOH
HOH
594
A
HOH
95
6
HOH
HOH
595
A
HOH
96
6
HOH
HOH
596
A
HOH
97
6
HOH
HOH
597
A
HOH
98
6
HOH
HOH
598
A
HOH
99
6
HOH
HOH
599
A
HOH
100
6
HOH
HOH
600
A
HOH
101
6
HOH
HOH
601
A
HOH
102
6
HOH
HOH
602
A
HOH
103
6
HOH
HOH
603
A
HOH
104
6
HOH
HOH
604
A
HOH
105
6
HOH
HOH
605
A
HOH
106
6
HOH
HOH
606
A
HOH
107
6
HOH
HOH
607
A
HOH
108
6
HOH
HOH
608
A
HOH
109
6
HOH
HOH
609
A
HOH
110
6
HOH
HOH
610
A
HOH
111
6
HOH
HOH
611
A
HOH
112
6
HOH
HOH
612
A
HOH
113
6
HOH
HOH
613
A
HOH
114
6
HOH
HOH
614
A
HOH
115
6
HOH
HOH
615
A
HOH
116
6
HOH
HOH
616
A
HOH
117
6
HOH
HOH
617
A
HOH
118
6
HOH
HOH
618
A
HOH
119
6
HOH
HOH
619
A
HOH
120
6
HOH
HOH
620
A
HOH
121
6
HOH
HOH
621
A
HOH
122
6
HOH
HOH
622
A
HOH
123
6
HOH
HOH
623
A
HOH
124
6
HOH
HOH
624
A
HOH
125
6
HOH
HOH
625
A
HOH
126
6
HOH
HOH
626
A
HOH
127
6
HOH
HOH
627
A
HOH
129
6
HOH
HOH
628
A
HOH
130
6
HOH
HOH
629
A
HOH
131
6
HOH
HOH
630
A
HOH
132
6
HOH
HOH
631
A
HOH
133
6
HOH
HOH
632
A
HOH
134
6
HOH
HOH
633
A
HOH
135
6
HOH
HOH
634
A
HOH
136
6
HOH
HOH
635
A
HOH
137
6
HOH
HOH
636
A
HOH
138
6
HOH
HOH
637
A
HOH
139
6
HOH
HOH
638
A
HOH
140
6
HOH
HOH
639
A
HOH
141
6
HOH
HOH
640
A
HOH
142
6
HOH
HOH
641
A
HOH
143
6
HOH
HOH
642
A
HOH
144
6
HOH
HOH
643
A
HOH
145
6
HOH
HOH
644
A
HOH
146
6
HOH
HOH
645
A
HOH
147
6
HOH
HOH
646
A
HOH
148
6
HOH
HOH
647
A
HOH
149
6
HOH
HOH
648
A
HOH
150
6
HOH
HOH
649
A
HOH
151
6
HOH
HOH
650
A
HOH
152
6
HOH
HOH
651
A
HOH
153
6
HOH
HOH
652
A
HOH
154
6
HOH
HOH
653
A
HOH
1
6
HOH
HOH
654
A
HOH
2
6
HOH
HOH
655
A
HOH
3
6
HOH
HOH
656
A
HOH
4
6
HOH
HOH
657
A
HOH
5
6
HOH
HOH
658
A
HOH
6
6
HOH
HOH
659
A
HOH
7
6
HOH
HOH
660
A
HOH
8
6
HOH
HOH
661
A
HOH
9
6
HOH
HOH
662
A
HOH
10
6
HOH
HOH
663
A
HOH
11
6
HOH
HOH
664
A
HOH
12
6
HOH
HOH
665
A
HOH
13
6
HOH
HOH
666
A
HOH
14
6
HOH
HOH
667
A
HOH
15
6
HOH
HOH
668
A
HOH
16
6
HOH
HOH
669
A
HOH
17
6
HOH
HOH
670
A
HOH
18
6
HOH
HOH
671
A
HOH
19
6
HOH
HOH
672
A
HOH
20
6
HOH
HOH
673
A
HOH
21
6
HOH
HOH
674
A
HOH
22
6
HOH
HOH
675
A
HOH
23
6
HOH
HOH
676
A
HOH
24
6
HOH
HOH
677
A
HOH
25
6
HOH
HOH
678
A
HOH
26
6
HOH
HOH
679
A
HOH
27
6
HOH
HOH
680
A
HOH
28
6
HOH
HOH
681
A
HOH
29
6
HOH
HOH
682
A
HOH
30
6
HOH
HOH
683
A
HOH
31
6
HOH
HOH
684
A
HOH
32
6
HOH
HOH
685
A
HOH
33
6
HOH
HOH
686
A
HOH
34
6
HOH
HOH
687
A
HOH
35
6
HOH
HOH
688
A
HOH
36
6
HOH
HOH
689
A
HOH
37
6
HOH
HOH
690
A
HOH
38
6
HOH
HOH
691
A
n
1
115
A
n
2
116
A
n
3
117
A
n
4
118
A
n
5
119
A
LYS
120
n
6
LYS
120
A
GLY
121
n
7
GLY
121
A
LYS
122
n
8
LYS
122
A
LEU
123
n
9
LEU
123
A
SER
124
n
10
SER
124
A
LEU
125
n
11
LEU
125
A
GLN
126
n
12
GLN
126
A
ASP
127
n
13
ASP
127
A
VAL
128
n
14
VAL
128
A
ALA
129
n
15
ALA
129
A
GLU
130
n
16
GLU
130
A
LEU
131
n
17
LEU
131
A
ILE
132
n
18
ILE
132
A
ARG
133
n
19
ARG
133
A
ALA
134
n
20
ALA
134
A
ARG
135
n
21
ARG
135
A
ALA
136
n
22
ALA
136
A
CYS
137
n
23
CYS
137
A
GLN
138
n
24
GLN
138
A
ARG
139
n
25
ARG
139
A
VAL
140
n
26
VAL
140
A
VAL
141
n
27
VAL
141
A
VAL
142
n
28
VAL
142
A
MET
143
n
29
MET
143
A
VAL
144
n
30
VAL
144
A
GLY
145
n
31
GLY
145
A
ALA
146
n
32
ALA
146
A
GLY
147
n
33
GLY
147
A
ILE
148
n
34
ILE
148
A
SER
149
n
35
SER
149
A
THR
150
n
36
THR
150
A
PRO
151
n
37
PRO
151
A
SER
152
n
38
SER
152
A
GLY
153
n
39
GLY
153
A
ILE
154
n
40
ILE
154
A
PRO
155
n
41
PRO
155
A
ASP
156
n
42
ASP
156
A
PHE
157
n
43
PHE
157
A
ARG
158
n
44
ARG
158
A
SER
159
n
45
SER
159
A
PRO
160
n
46
PRO
160
A
GLY
161
n
47
GLY
161
A
SER
162
n
48
SER
162
A
GLY
163
n
49
GLY
163
A
LEU
164
n
50
LEU
164
A
TYR
165
n
51
TYR
165
A
SER
166
n
52
SER
166
A
ASN
167
n
53
ASN
167
A
LEU
168
n
54
LEU
168
A
GLN
169
n
55
GLN
169
A
GLN
170
n
56
GLN
170
A
TYR
171
n
57
TYR
171
A
ASP
172
n
58
ASP
172
A
LEU
173
n
59
LEU
173
A
PRO
174
n
60
PRO
174
A
TYR
175
n
61
TYR
175
A
PRO
176
n
62
PRO
176
A
GLU
177
n
63
GLU
177
A
ALA
178
n
64
ALA
178
A
ILE
179
n
65
ILE
179
A
PHE
180
n
66
PHE
180
A
GLU
181
n
67
GLU
181
A
LEU
182
n
68
LEU
182
A
PRO
183
n
69
PRO
183
A
PHE
184
n
70
PHE
184
A
PHE
185
n
71
PHE
185
A
PHE
186
n
72
PHE
186
A
HIS
187
n
73
HIS
187
A
ASN
188
n
74
ASN
188
A
PRO
189
n
75
PRO
189
A
LYS
190
n
76
LYS
190
A
PRO
191
n
77
PRO
191
A
PHE
192
n
78
PHE
192
A
PHE
193
n
79
PHE
193
A
THR
194
n
80
THR
194
A
LEU
195
n
81
LEU
195
A
ALA
196
n
82
ALA
196
A
LYS
197
n
83
LYS
197
A
GLU
198
n
84
GLU
198
A
LEU
199
n
85
LEU
199
A
TYR
200
n
86
TYR
200
A
PRO
201
n
87
PRO
201
A
GLY
202
n
88
GLY
202
A
ASN
203
n
89
ASN
203
A
TYR
204
n
90
TYR
204
A
LYS
205
n
91
LYS
205
A
PRO
206
n
92
PRO
206
A
ASN
207
n
93
ASN
207
A
VAL
208
n
94
VAL
208
A
THR
209
n
95
THR
209
A
HIS
210
n
96
HIS
210
A
TYR
211
n
97
TYR
211
A
PHE
212
n
98
PHE
212
A
LEU
213
n
99
LEU
213
A
ARG
214
n
100
ARG
214
A
LEU
215
n
101
LEU
215
A
LEU
216
n
102
LEU
216
A
HIS
217
n
103
HIS
217
A
ASP
218
n
104
ASP
218
A
LYS
219
n
105
LYS
219
A
GLY
220
n
106
GLY
220
A
LEU
221
n
107
LEU
221
A
LEU
222
n
108
LEU
222
A
LEU
223
n
109
LEU
223
A
ARG
224
n
110
ARG
224
A
LEU
225
n
111
LEU
225
A
TYR
226
n
112
TYR
226
A
THR
227
n
113
THR
227
A
GLN
228
n
114
GLN
228
A
ASN
229
n
115
ASN
229
A
ILE
230
n
116
ILE
230
A
ASP
231
n
117
ASP
231
A
GLY
232
n
118
GLY
232
A
LEU
233
n
119
LEU
233
A
GLU
234
n
120
GLU
234
A
ARG
235
n
121
ARG
235
A
VAL
236
n
122
VAL
236
A
SER
237
n
123
SER
237
A
GLY
238
n
124
GLY
238
A
ILE
239
n
125
ILE
239
A
PRO
240
n
126
PRO
240
A
ALA
241
n
127
ALA
241
A
SER
242
n
128
SER
242
A
LYS
243
n
129
LYS
243
A
LEU
244
n
130
LEU
244
A
VAL
245
n
131
VAL
245
A
GLU
246
n
132
GLU
246
A
ALA
247
n
133
ALA
247
A
HIS
248
n
134
HIS
248
A
GLY
249
n
135
GLY
249
A
THR
250
n
136
THR
250
A
PHE
251
n
137
PHE
251
A
ALA
252
n
138
ALA
252
A
SER
253
n
139
SER
253
A
ALA
254
n
140
ALA
254
A
THR
255
n
141
THR
255
A
CYS
256
n
142
CYS
256
A
THR
257
n
143
THR
257
A
VAL
258
n
144
VAL
258
A
CYS
259
n
145
CYS
259
A
GLN
260
n
146
GLN
260
A
ARG
261
n
147
ARG
261
A
PRO
262
n
148
PRO
262
A
PHE
263
n
149
PHE
263
A
PRO
264
n
150
PRO
264
A
GLY
265
n
151
GLY
265
A
GLU
266
n
152
GLU
266
A
ASP
267
n
153
ASP
267
A
ILE
268
n
154
ILE
268
A
ARG
269
n
155
ARG
269
A
ALA
270
n
156
ALA
270
A
ASP
271
n
157
ASP
271
A
VAL
272
n
158
VAL
272
A
MET
273
n
159
MET
273
A
ALA
274
n
160
ALA
274
A
ASP
275
n
161
ASP
275
A
ARG
276
n
162
ARG
276
A
VAL
277
n
163
VAL
277
A
PRO
278
n
164
PRO
278
A
ARG
279
n
165
ARG
279
A
CYS
280
n
166
CYS
280
A
PRO
281
n
167
PRO
281
A
VAL
282
n
168
VAL
282
A
CYS
283
n
169
CYS
283
A
THR
284
n
170
THR
284
A
GLY
285
n
171
GLY
285
A
VAL
286
n
172
VAL
286
A
VAL
287
n
173
VAL
287
A
LYS
288
n
174
LYS
288
A
PRO
289
n
175
PRO
289
A
ASP
290
n
176
ASP
290
A
ILE
291
n
177
ILE
291
A
VAL
292
n
178
VAL
292
A
PHE
293
n
179
PHE
293
A
PHE
294
n
180
PHE
294
A
GLY
295
n
181
GLY
295
A
GLU
296
n
182
GLU
296
A
PRO
297
n
183
PRO
297
A
LEU
298
n
184
LEU
298
A
PRO
299
n
185
PRO
299
A
GLN
300
n
186
GLN
300
A
ARG
301
n
187
ARG
301
A
PHE
302
n
188
PHE
302
A
LEU
303
n
189
LEU
303
A
LEU
304
n
190
LEU
304
A
HIS
305
n
191
HIS
305
A
VAL
306
n
192
VAL
306
A
VAL
307
n
193
VAL
307
A
ASP
308
n
194
ASP
308
A
PHE
309
n
195
PHE
309
A
PRO
310
n
196
PRO
310
A
MET
311
n
197
MET
311
A
ALA
312
n
198
ALA
312
A
ASP
313
n
199
ASP
313
A
LEU
314
n
200
LEU
314
A
LEU
315
n
201
LEU
315
A
LEU
316
n
202
LEU
316
A
ILE
317
n
203
ILE
317
A
LEU
318
n
204
LEU
318
A
GLY
319
n
205
GLY
319
A
THR
320
n
206
THR
320
A
SER
321
n
207
SER
321
A
LEU
322
n
208
LEU
322
A
GLU
323
n
209
GLU
323
A
VAL
324
n
210
VAL
324
A
GLU
325
n
211
GLU
325
A
PRO
326
n
212
PRO
326
A
PHE
327
n
213
PHE
327
A
ALA
328
n
214
ALA
328
A
SER
329
n
215
SER
329
A
LEU
330
n
216
LEU
330
A
THR
331
n
217
THR
331
A
GLU
332
n
218
GLU
332
A
ALA
333
n
219
ALA
333
A
VAL
334
n
220
VAL
334
A
ARG
335
n
221
ARG
335
A
SER
336
n
222
SER
336
A
SER
337
n
223
SER
337
A
VAL
338
n
224
VAL
338
A
PRO
339
n
225
PRO
339
A
ARG
340
n
226
ARG
340
A
LEU
341
n
227
LEU
341
A
LEU
342
n
228
LEU
342
A
ILE
343
n
229
ILE
343
A
ASN
344
n
230
ASN
344
A
ARG
345
n
231
ARG
345
A
ASP
346
n
232
ASP
346
A
LEU
347
n
233
LEU
347
A
VAL
348
n
234
VAL
348
A
GLY
349
n
235
GLY
349
A
PRO
350
n
236
PRO
350
A
LEU
351
n
237
LEU
351
A
ALA
352
n
238
ALA
352
A
TRP
353
n
239
TRP
353
A
HIS
354
n
240
HIS
354
A
PRO
355
n
241
PRO
355
A
ARG
356
n
242
ARG
356
A
SER
357
n
243
SER
357
A
ARG
358
n
244
ARG
358
A
ASP
359
n
245
ASP
359
A
VAL
360
n
246
VAL
360
A
ALA
361
n
247
ALA
361
A
GLN
362
n
248
GLN
362
A
LEU
363
n
249
LEU
363
A
GLY
364
n
250
GLY
364
A
ASP
365
n
251
ASP
365
A
VAL
366
n
252
VAL
366
A
VAL
367
n
253
VAL
367
A
HIS
368
n
254
HIS
368
A
GLY
369
n
255
GLY
369
A
VAL
370
n
256
VAL
370
A
GLU
371
n
257
GLU
371
A
SER
372
n
258
SER
372
A
LEU
373
n
259
LEU
373
A
VAL
374
n
260
VAL
374
A
GLU
375
n
261
GLU
375
A
LEU
376
n
262
LEU
376
A
LEU
377
n
263
LEU
377
A
GLY
378
n
264
GLY
378
A
TRP
379
n
265
TRP
379
A
THR
380
n
266
THR
380
A
GLU
381
n
267
GLU
381
A
GLU
382
n
268
GLU
382
A
MET
383
n
269
MET
383
A
ARG
384
n
270
ARG
384
A
ASP
385
n
271
ASP
385
A
LEU
386
n
272
LEU
386
A
VAL
387
n
273
VAL
387
A
GLN
388
n
274
GLN
388
A
ARG
389
n
275
ARG
389
A
GLU
390
n
276
GLU
390
A
THR
391
n
277
THR
391
A
GLY
392
n
278
GLY
392
A
LYS
393
n
279
LYS
393
A
n
280
394
A
n
281
395
A
n
282
396
A
n
283
397
A
n
284
398
A
n
285
399
A
author_and_software_defined_assembly
PISA
1
monomeric
A
CYS
256
A
SG
CYS
142
1_555
A
ZN
401
B
ZN
ZN
1_555
A
CYS
259
A
SG
CYS
145
1_555
108.7
A
CYS
256
A
SG
CYS
142
1_555
A
ZN
401
B
ZN
ZN
1_555
A
CYS
280
A
SG
CYS
166
1_555
110.6
A
CYS
259
A
SG
CYS
145
1_555
A
ZN
401
B
ZN
ZN
1_555
A
CYS
280
A
SG
CYS
166
1_555
108.5
A
CYS
256
A
SG
CYS
142
1_555
A
ZN
401
B
ZN
ZN
1_555
A
CYS
283
A
SG
CYS
169
1_555
93.6
A
CYS
259
A
SG
CYS
145
1_555
A
ZN
401
B
ZN
ZN
1_555
A
CYS
283
A
SG
CYS
169
1_555
117.3
A
CYS
280
A
SG
CYS
166
1_555
A
ZN
401
B
ZN
ZN
1_555
A
CYS
283
A
SG
CYS
169
1_555
117.0
A
HOH
628
G
O
HOH
1_555
A
NA
405
F
NA
NA
1_555
A
HOH
629
G
O
HOH
1_555
66.5
A
HOH
628
G
O
HOH
1_555
A
NA
405
F
NA
NA
1_555
A
HOH
653
G
O
HOH
1_555
67.3
A
HOH
629
G
O
HOH
1_555
A
NA
405
F
NA
NA
1_555
A
HOH
653
G
O
HOH
1_555
95.4
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
VAL
245
A
O
VAL
131
A
N
LEU
225
A
N
LEU
111
A
O
TYR
226
A
O
TYR
112
A
N
VAL
142
A
N
VAL
28
A
N
VAL
141
A
N
VAL
27
A
O
LEU
316
A
O
LEU
202
A
N
ILE
317
A
N
ILE
203
A
O
ILE
343
A
O
ILE
229
A
N
LEU
342
A
N
LEU
228
A
O
GLN
362
A
O
GLN
248
A
O
PHE
263
A
O
PHE
149
A
N
ALA
254
A
N
ALA
140
A
N
SER
253
A
N
SER
139
A
O
ASP
290
A
O
ASP
176
1
A
CG
LYS
120
A
CG
LYS
6
1
Y
1
A
CD
LYS
120
A
CD
LYS
6
1
Y
1
A
CE
LYS
120
A
CE
LYS
6
1
Y
1
A
NZ
LYS
120
A
NZ
LYS
6
1
Y
1
A
SER
115
A
SER
1
1
Y
1
A
ASN
116
A
ASN
2
1
Y
1
A
ALA
117
A
ALA
3
1
Y
1
A
SER
118
A
SER
4
1
Y
1
A
ASP
119
A
ASP
5
1
Y
1
A
LEU
394
A
LEU
280
1
Y
1
A
ASP
395
A
ASP
281
1
Y
1
A
GLY
396
A
GLY
282
1
Y
1
A
PRO
397
A
PRO
283
1
Y
1
A
ASP
398
A
ASP
284
1
Y
1
A
LYS
399
A
LYS
285
1
Y
1
A
A
O
O
HOH
HOH
681
687
2.13
1
A
ASN
167
-119.76
51.93
41.090
-0.06
-0.03
0.00
-0.06
0.00
0.08
0.955
0.928
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.24693
0.19735
0.19984
2.24
39.43
900
16756
5.1
97.71
5.990
0.147
RANDOM
1
THROUGHOUT
MOLECULAR REPLACEMENT
0.263
0.215
0.80
0.80
1.40
MAXIMUM LIKELIHOOD
MASK
2.24
39.43
191
2375
39
0
2145
0.011
0.022
2269
1.270
2.000
3093
5.527
5.000
279
34.589
22.828
99
14.176
15.000
361
13.413
15.000
20
0.084
0.200
343
0.005
0.022
1738
0.599
1.500
1390
1.137
2.000
2262
1.618
3.000
879
2.708
4.500
831
0.428
0.413
2.296
64
1151
20
91.91
2.24
39.43
4JT9
16756
1
refinement
REFMAC
5.5.0109
Crystal Structure of human SIRT3 with ELT inhibitor 3 [14-(4-{2-[(methylsulfonyl)amino]ethyl}piperidin-1-yl)thieno[3,2-d]pyrimidine-6-carboxamide]
1
N
N
2
N
N
3
N
N
4
N
N
4
N
N
5
N
N
6
N
N
A
SER
124
A
SER
10
HELX_P
A
ALA
134
A
ALA
20
1
1
11
A
ALA
146
A
ALA
32
HELX_P
A
GLY
153
A
GLY
39
5
2
8
A
GLY
163
A
GLY
49
HELX_P
A
SER
166
A
SER
52
5
3
4
A
ASN
167
A
ASN
53
HELX_P
A
ASP
172
A
ASP
58
1
4
6
A
TYR
175
A
TYR
61
HELX_P
A
PHE
180
A
PHE
66
5
5
6
A
GLU
181
A
GLU
67
HELX_P
A
ASN
188
A
ASN
74
1
6
8
A
PRO
189
A
PRO
75
HELX_P
A
TYR
200
A
TYR
86
1
7
12
A
ASN
207
A
ASN
93
HELX_P
A
LYS
219
A
LYS
105
1
8
13
A
GLY
232
A
GLY
118
HELX_P
A
SER
237
A
SER
123
1
9
6
A
PRO
240
A
PRO
126
HELX_P
A
SER
242
A
SER
128
5
10
3
A
ILE
268
A
ILE
154
HELX_P
A
ALA
274
A
ALA
160
1
11
7
A
PRO
299
A
PRO
185
HELX_P
A
LEU
303
A
LEU
189
5
12
5
A
LEU
304
A
LEU
190
HELX_P
A
ALA
312
A
ALA
198
1
13
9
A
PRO
326
A
PRO
212
HELX_P
A
THR
331
A
THR
217
1
14
6
A
GLY
349
A
GLY
235
HELX_P
A
HIS
354
A
HIS
240
1
15
6
A
ASP
365
A
ASP
251
HELX_P
A
GLY
378
A
GLY
264
1
16
14
A
TRP
379
A
TRP
265
HELX_P
A
GLY
392
A
GLY
278
1
17
14
metalc
2.305
A
CYS
256
A
SG
CYS
142
1_555
A
ZN
401
B
ZN
ZN
1_555
metalc
2.350
A
CYS
259
A
SG
CYS
145
1_555
A
ZN
401
B
ZN
ZN
1_555
metalc
2.259
A
CYS
280
A
SG
CYS
166
1_555
A
ZN
401
B
ZN
ZN
1_555
metalc
2.336
A
CYS
283
A
SG
CYS
169
1_555
A
ZN
401
B
ZN
ZN
1_555
metalc
2.838
A
NA
405
F
NA
NA
1_555
A
HOH
628
G
O
HOH
1_555
metalc
2.794
A
NA
405
F
NA
NA
1_555
A
HOH
629
G
O
HOH
1_555
metalc
2.098
A
NA
405
F
NA
NA
1_555
A
HOH
653
G
O
HOH
1_555
HYDROLASE/HYDROLASE INHIBITOR
Deacetylase, HYDROLASE-HYDROLASE INHIBITOR complex
A
GLU
325
A
GLU
211
1
A
PRO
326
A
PRO
212
7.69
SIR3_HUMAN
UNP
1
118
Q9NTG7
SDKGKLSLQDVAELIRARACQRVVVMVGAGISTPSGIPDFRSPGSGLYSNLQQYDLPYPEAIFELPFFFHNPKPFFTLAK
ELYPGNYKPNVTHYFLRLLHDKGLLLRLYTQNIDGLERVSGIPASKLVEAHGTFASATCTVCQRPFPGEDIRADVMADRV
PRCPVCTGVVKPDIVFFGEPLPQRFLLHVVDFPMADLLLILGTSLEVEPFASLTEAVRSSVPRLLINRDLVGPLAWHPRS
RDVAQLGDVVHGVESLVELLGWTEEMRDLVQRETGKLDGPDK
118
399
4JT9
118
399
Q9NTG7
A
1
4
285
1
expression tag
SER
115
4JT9
A
Q9NTG7
UNP
1
1
expression tag
ASN
116
4JT9
A
Q9NTG7
UNP
2
1
expression tag
ALA
117
4JT9
A
Q9NTG7
UNP
3
6
3
parallel
parallel
parallel
parallel
parallel
anti-parallel
anti-parallel
A
LEU
244
A
LEU
130
A
GLU
246
A
GLU
132
A
LEU
222
A
LEU
108
A
THR
227
A
THR
113
A
VAL
140
A
VAL
26
A
VAL
144
A
VAL
30
A
LEU
314
A
LEU
200
A
LEU
318
A
LEU
204
A
ARG
340
A
ARG
226
A
ASN
344
A
ASN
230
A
ASP
359
A
ASP
245
A
LEU
363
A
LEU
249
A
PRO
262
A
PRO
148
A
PRO
264
A
PRO
150
A
GLY
249
A
GLY
135
A
CYS
256
A
CYS
142
A
VAL
287
A
VAL
173
A
ILE
291
A
ILE
177
BINDING SITE FOR RESIDUE ZN A 401
A
ZN
401
Software
4
BINDING SITE FOR RESIDUE 1NS A 402
A
1NS
402
Software
14
BINDING SITE FOR RESIDUE GOL A 403
A
GOL
403
Software
5
BINDING SITE FOR RESIDUE GOL A 404
A
GOL
404
Software
5
BINDING SITE FOR RESIDUE NA A 405
A
NA
405
Software
6
A
CYS
256
A
CYS
142
4
1_555
A
CYS
259
A
CYS
145
4
1_555
A
CYS
280
A
CYS
166
4
1_555
A
CYS
283
A
CYS
169
4
1_555
A
ILE
154
A
ILE
40
14
1_555
A
ASP
156
A
ASP
42
14
1_555
A
PHE
157
A
PHE
43
14
1_555
A
GLN
228
A
GLN
114
14
1_555
A
ASN
229
A
ASN
115
14
1_555
A
ILE
230
A
ILE
116
14
1_555
A
ASP
231
A
ASP
117
14
1_555
A
HIS
248
A
HIS
134
14
1_555
A
VAL
292
A
VAL
178
14
1_555
A
PHE
294
A
PHE
180
14
1_555
A
GOL
403
D
GOL
14
1_555
A
GOL
404
E
GOL
14
1_555
A
HOH
522
G
HOH
14
1_555
A
HOH
614
G
HOH
14
1_555
A
PHE
294
A
PHE
180
5
1_555
A
GLY
295
A
GLY
181
5
1_555
A
GLU
296
A
GLU
182
5
1_555
A
LEU
298
A
LEU
184
5
1_555
A
1NS
402
C
1NS
5
1_555
A
GLY
145
A
GLY
31
5
1_555
A
ALA
146
A
ALA
32
5
1_555
A
GLN
228
A
GLN
114
5
1_555
A
ASN
229
A
ASN
115
5
1_555
A
1NS
402
C
1NS
5
1_555
A
HIS
187
A
HIS
73
6
1_555
A
HIS
354
A
HIS
240
6
4_664
A
HOH
611
G
HOH
6
4_664
A
HOH
628
G
HOH
6
1_555
A
HOH
629
G
HOH
6
1_555
A
HOH
653
G
HOH
6
1_555
170
P 65