0.010658
0.000000
0.000000
0.000000
0.009571
0.000000
0.000000
0.000000
0.019037
0.00000
0.00000
0.00000
Banerjee, S.
Shanmugam, G.
Stone, M.P.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
93.826
104.486
52.529
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Ca 2
40.078
CALCIUM ION
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H16 N5 O12 P3
491.182
2'-DEOXYADENOSINE 5'-TRIPHOSPHATE
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C14 H20 N5 O8 P
417.311
n
2'-DEOXY-N-[(1S)-1-METHYL-3-OXOPROPYL]GUANOSINE 5'-PHOSPHATE
RNA linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
CA
N
75
N
N
N
76
R
C
N
77
N
C
N
78
N
O
N
79
N
C
N
80
N
S
N
81
N
O
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
O
N
90
N
P
N
91
N
O
N
92
N
O
N
93
N
O
N
94
N
C
N
95
R
C
N
96
N
O
N
97
S
C
N
98
N
O
N
99
N
C
N
100
R
C
Y
101
N
N
Y
102
N
C
Y
103
N
N
Y
104
N
C
Y
105
N
C
N
106
N
N
Y
107
N
N
Y
108
N
C
Y
109
N
N
Y
110
N
C
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
O
N
126
N
P
N
127
N
O
N
128
N
O
N
129
N
O
N
130
N
C
N
131
R
C
N
132
N
O
N
133
S
C
N
134
N
O
N
135
N
C
N
136
R
C
N
137
N
N
N
138
N
C
N
139
N
O
N
140
N
N
N
141
N
C
N
142
N
N
N
143
N
C
N
144
N
C
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
O
N
160
N
P
N
161
N
O
N
162
N
O
N
163
N
O
N
164
N
C
N
165
R
C
N
166
N
O
N
167
S
C
N
168
N
O
N
169
N
C
N
170
R
C
Y
171
N
N
Y
172
N
C
Y
173
N
N
Y
174
N
C
N
175
N
C
N
176
N
O
N
177
N
N
N
178
N
C
N
179
N
N
N
180
N
N
Y
181
N
C
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
O
N
197
N
P
N
198
N
O
N
199
N
O
N
200
N
O
N
201
N
C
N
202
R
C
N
203
N
O
N
204
S
C
N
205
N
O
N
206
N
C
N
207
R
C
N
208
N
N
N
209
N
C
N
210
N
O
N
211
N
N
N
212
N
C
N
213
N
O
N
214
N
C
N
215
N
C
N
216
N
C
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
P
N
233
N
O
N
234
N
O
N
235
N
O
N
236
S
P
N
237
N
O
N
238
N
O
N
239
N
O
N
240
S
P
N
241
N
O
N
242
N
O
N
243
N
O
N
244
N
O
N
245
N
C
N
246
R
C
N
247
N
O
N
248
S
C
N
249
N
O
N
250
N
C
N
251
R
C
Y
252
N
N
Y
253
N
C
Y
254
N
N
Y
255
N
C
Y
256
N
C
N
257
N
N
Y
258
N
N
Y
259
N
C
Y
260
N
N
Y
261
N
C
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
N
N
279
S
C
N
280
N
C
N
281
N
O
N
282
N
C
N
283
N
C
N
284
N
C
N
285
N
O
N
286
N
N
N
287
N
O
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
N
N
299
S
C
N
300
N
C
N
301
N
O
N
302
N
C
N
303
N
C
N
304
N
C
N
305
N
O
N
306
N
O
N
307
N
O
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
N
N
318
N
C
N
319
N
C
N
320
N
O
N
321
N
O
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
N
N
328
S
C
N
329
N
C
N
330
N
O
N
331
N
C
Y
332
N
C
Y
333
N
N
Y
334
N
C
Y
335
N
C
Y
336
N
N
N
337
N
O
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
O
N
349
N
H
N
350
N
H
N
351
N
N
N
352
S
C
N
353
N
C
N
354
N
O
N
355
S
C
N
356
N
C
N
357
N
C
N
358
N
C
N
359
N
O
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
O
N
374
N
O
N
375
N
P
N
376
N
O
N
377
N
O
N
378
N
C
N
379
R
C
N
380
N
O
N
381
S
C
N
382
N
O
N
383
N
C
N
384
R
C
Y
385
N
N
Y
386
N
C
N
387
N
N
Y
388
N
C
Y
389
N
N
Y
390
N
C
N
391
N
C
N
392
N
O
N
393
N
N
N
394
N
C
N
395
N
N
N
396
S
C
N
397
N
C
N
398
N
C
N
399
N
C
N
400
N
O
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
N
N
422
S
C
N
423
N
C
N
424
N
O
N
425
N
C
N
426
N
C
N
427
N
C
N
428
N
C
N
429
N
O
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
N
N
444
S
C
N
445
N
C
N
446
N
O
N
447
N
C
N
448
N
C
N
449
N
C
N
450
N
C
N
451
N
N
N
452
N
O
N
453
N
H
N
454
N
H
N
455
N
H
N
456
N
H
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
H
N
462
N
H
N
463
N
H
N
464
N
H
N
465
N
H
N
466
N
H
N
467
N
H
N
468
N
N
N
469
S
C
N
470
N
C
N
471
N
O
N
472
N
C
N
473
N
C
N
474
N
S
N
475
N
C
N
476
N
O
N
477
N
H
N
478
N
H
N
479
N
H
N
480
N
H
N
481
N
H
N
482
N
H
N
483
N
H
N
484
N
H
N
485
N
H
N
486
N
H
N
487
N
H
N
488
N
N
N
489
S
C
N
490
N
C
N
491
N
O
N
492
N
C
Y
493
N
C
Y
494
N
C
Y
495
N
C
Y
496
N
C
Y
497
N
C
Y
498
N
C
N
499
N
O
N
500
N
H
N
501
N
H
N
502
N
H
N
503
N
H
N
504
N
H
N
505
N
H
N
506
N
H
N
507
N
H
N
508
N
H
N
509
N
H
N
510
N
H
N
511
N
N
N
512
S
C
N
513
N
C
N
514
N
O
N
515
N
C
N
516
N
C
N
517
N
C
N
518
N
O
N
519
N
H
N
520
N
H
N
521
N
H
N
522
N
H
N
523
N
H
N
524
N
H
N
525
N
H
N
526
N
H
N
527
N
H
N
528
N
N
N
529
S
C
N
530
N
C
N
531
N
O
N
532
N
C
N
533
N
O
N
534
N
O
N
535
N
H
N
536
N
H
N
537
N
H
N
538
N
H
N
539
N
H
N
540
N
H
N
541
N
H
N
542
N
N
N
543
S
C
N
544
N
C
N
545
N
O
N
546
R
C
N
547
N
O
N
548
N
C
N
549
N
O
N
550
N
H
N
551
N
H
N
552
N
H
N
553
N
H
N
554
N
H
N
555
N
H
N
556
N
H
N
557
N
H
N
558
N
H
N
559
N
N
N
560
S
C
N
561
N
C
N
562
N
O
N
563
N
C
Y
564
N
C
Y
565
N
C
Y
566
N
C
Y
567
N
C
Y
568
N
C
Y
569
N
C
N
570
N
O
N
571
N
O
N
572
N
H
N
573
N
H
N
574
N
H
N
575
N
H
N
576
N
H
N
577
N
H
N
578
N
H
N
579
N
H
N
580
N
H
N
581
N
H
N
582
N
H
N
583
N
N
N
584
S
C
N
585
N
C
N
586
N
O
N
587
N
C
N
588
N
C
N
589
N
C
N
590
N
O
N
591
N
H
N
592
N
H
N
593
N
H
N
594
N
H
N
595
N
H
N
596
N
H
N
597
N
H
N
598
N
H
N
599
N
H
N
600
N
H
N
601
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
doub
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
Y
106
N
sing
Y
107
N
sing
Y
108
N
doub
N
109
N
sing
Y
110
N
sing
Y
111
N
sing
Y
112
N
doub
N
113
N
sing
Y
114
N
doub
N
115
N
sing
N
116
N
sing
Y
117
N
sing
Y
118
N
doub
N
119
N
sing
Y
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
doub
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
doub
N
147
N
sing
N
148
N
doub
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
doub
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
Y
179
N
sing
Y
180
N
sing
Y
181
N
doub
N
182
N
sing
Y
183
N
sing
N
184
N
sing
Y
185
N
doub
N
186
N
doub
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
doub
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
doub
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
doub
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
doub
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
doub
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
doub
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
Y
265
N
sing
Y
266
N
sing
Y
267
N
doub
N
268
N
sing
Y
269
N
sing
Y
270
N
sing
Y
271
N
doub
N
272
N
sing
Y
273
N
doub
N
274
N
sing
N
275
N
sing
Y
276
N
sing
Y
277
N
doub
N
278
N
sing
Y
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
doub
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
doub
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
doub
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
doub
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
doub
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
doub
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
Y
337
N
sing
Y
338
N
doub
Y
339
N
doub
N
340
N
sing
Y
341
N
sing
N
342
N
sing
Y
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
doub
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
doub
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
Y
390
N
sing
Y
391
N
sing
N
392
N
sing
Y
393
N
doub
N
394
N
doub
Y
395
N
doub
N
396
N
sing
Y
397
N
sing
N
398
N
sing
N
399
N
doub
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
doub
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
doub
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
doub
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
sing
N
464
N
sing
N
465
N
sing
N
466
N
sing
N
467
N
sing
N
468
N
sing
N
469
N
sing
N
470
N
sing
N
471
N
doub
N
472
N
sing
N
473
N
sing
N
474
N
sing
N
475
N
sing
N
476
N
sing
N
477
N
sing
N
478
N
sing
N
479
N
sing
N
480
N
sing
N
481
N
sing
N
482
N
sing
N
483
N
sing
N
484
N
sing
N
485
N
sing
N
486
N
sing
N
487
N
sing
N
488
N
sing
N
489
N
sing
N
490
N
doub
N
491
N
sing
N
492
N
sing
N
493
N
sing
N
494
N
sing
Y
495
N
doub
Y
496
N
sing
Y
497
N
sing
N
498
N
sing
Y
499
N
doub
N
500
N
sing
Y
501
N
doub
N
502
N
sing
Y
503
N
sing
N
504
N
sing
N
505
N
sing
N
506
N
sing
N
507
N
sing
N
508
N
sing
N
509
N
sing
N
510
N
sing
N
511
N
sing
N
512
N
sing
N
513
N
doub
N
514
N
sing
N
515
N
sing
N
516
N
sing
N
517
N
sing
N
518
N
sing
N
519
N
sing
N
520
N
sing
N
521
N
sing
N
522
N
sing
N
523
N
sing
N
524
N
sing
N
525
N
sing
N
526
N
sing
N
527
N
sing
N
528
N
sing
N
529
N
sing
N
530
N
doub
N
531
N
sing
N
532
N
sing
N
533
N
sing
N
534
N
sing
N
535
N
sing
N
536
N
sing
N
537
N
sing
N
538
N
sing
N
539
N
sing
N
540
N
sing
N
541
N
sing
N
542
N
sing
N
543
N
doub
N
544
N
sing
N
545
N
sing
N
546
N
sing
N
547
N
sing
N
548
N
sing
N
549
N
sing
N
550
N
sing
N
551
N
sing
N
552
N
sing
N
553
N
sing
N
554
N
sing
N
555
N
sing
N
556
N
sing
N
557
N
sing
N
558
N
sing
N
559
N
doub
N
560
N
sing
N
561
N
sing
N
562
N
sing
N
563
N
sing
Y
564
N
doub
Y
565
N
sing
Y
566
N
sing
N
567
N
sing
Y
568
N
doub
N
569
N
sing
Y
570
N
doub
N
571
N
sing
Y
572
N
sing
N
573
N
sing
N
574
N
sing
N
575
N
sing
N
576
N
sing
N
577
N
sing
N
578
N
sing
N
579
N
sing
N
580
N
sing
N
581
N
sing
N
582
N
sing
N
583
N
doub
N
584
N
sing
N
585
N
sing
N
586
N
sing
N
587
N
sing
N
588
N
sing
N
589
N
sing
N
590
N
sing
N
591
N
sing
N
592
N
sing
N
593
N
sing
N
594
N
sing
US
Chem.Res.Toxicol.
CRTOEC
2140
0893-228X
26
1348
1360
10.1021/tx400200b
23947567
Ring-Opening of the gamma-OH-PdG Adduct Promotes Error-Free Bypass by the Sulfolobus solfataricus DNA Polymerase Dpo4.
2013
10.2210/pdb4jv0/pdb
pdb_00004jv0
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1
CCD
2009-10-15
MARMOSAIC 225 mm CCD
SINGLE WAVELENGTH
M
x-ray
1
0.979
1.0
1.0
1.0
21-ID-F
APS
0.979
1.0
SYNCHROTRON
APS BEAMLINE 21-ID-F
39848.398
DNA polymerase IV
2.7.7.7
1
man
polymer
4551.001
DNA (5'-D(P*TP*(KAG)P*GP*AP*AP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3')
1
syn
polymer
4385.852
DNA (5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*TP*TP*CP*C)-3')
1
syn
polymer
491.182
2'-DEOXYADENOSINE 5'-TRIPHOSPHATE
1
syn
non-polymer
40.078
CALCIUM ION
2
syn
non-polymer
18.015
water
44
nat
water
Pol IV
no
no
HHHHHHMIVLFVDFDYFYAQVEEVLNPSLKGKPVVVCVFSGRFEDSGAVATANYEARKFGVKAGIPIVEAKKILPNAVYL
PMRKEVYQQVSSRIMNLLREYSEKIEIASIDEAYLDISDKVRDYREAYNLGLEIKNKILEKEKITVTVGISKNKVFAKIA
ADMAKPNGIKVIDDEEVKRLIRELDIADVPGIGNITAEKLKKLGINKLVDTLSIEFDKLKGMIGEAKAKYLISLARDEYN
EPIRTRVRKSIGRIVTMKRNSRNLEEIKPYLFRAIEESYYKLDKRIPKAIHVVAVTEDLDIVSRGRTFPHGISKETAYSE
SVKLLQKILEEDERKIRRIGVRFSKFI
HHHHHHMIVLFVDFDYFYAQVEEVLNPSLKGKPVVVCVFSGRFEDSGAVATANYEARKFGVKAGIPIVEAKKILPNAVYL
PMRKEVYQQVSSRIMNLLREYSEKIEIASIDEAYLDISDKVRDYREAYNLGLEIKNKILEKEKITVTVGISKNKVFAKIA
ADMAKPNGIKVIDDEEVKRLIRELDIADVPGIGNITAEKLKKLGINKLVDTLSIEFDKLKGMIGEAKAKYLISLARDEYN
EPIRTRVRKSIGRIVTMKRNSRNLEEIKPYLFRAIEESYYKLDKRIPKAIHVVAVTEDLDIVSRGRTFPHGISKETAYSE
SVKLLQKILEEDERKIRRIGVRFSKFI
A
polypeptide(L)
no
yes
(DT)(KAG)(DG)(DA)(DA)(DT)(DC)(DC)(DT)(DT)(DC)(DC)(DC)(DC)(DC)
TGGAATCCTTCCCCC
B
polydeoxyribonucleotide
no
no
(DG)(DG)(DG)(DG)(DG)(DA)(DA)(DG)(DG)(DA)(DT)(DT)(DC)(DC)
GGGGGAAGGATTCC
C
polydeoxyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
ATCC 35092 / DSM 1617 / JCM 11322 / P2
sample
dbh, dpo4, SSO2448
273057
Sulfolobus solfataricus
562
ESCHERICHIA COLI
1
2.640
53.390
VAPOR DIFFUSION, HANGING DROP
7.4
50 MM TRIS HCL, 15% PEG3350, 100MM CALCIUM DIACETATE, 2.5% GLYCEROL, pH 7.4, VAPOR DIFFUSION, HANGING DROP, temperature 298K
298
-3.333
1
19
B
5
C
32
2.169
B_KAG5:DC32_C
1
-10.122
0.861
-0.384
-0.092
-11.809
1
19
B
6
C
31
2.911
B_DG6:DC31_C
2
-9.733
-0.807
-0.486
-0.308
-6.994
1
20
B
7
C
30
1.403
B_DA7:DT30_C
3
-0.126
-0.278
-0.447
-0.187
0.191
1
20
B
8
C
29
4.941
B_DA8:DT29_C
4
-12.836
0.018
0.054
-0.111
9.757
1
20
B
9
C
28
2.907
B_DT9:DA28_C
5
-8.254
-0.231
-0.161
-0.230
4.514
1
19
B
10
C
27
0.185
B_DC10:DG27_C
6
-16.088
-0.171
-0.041
-0.347
-6.604
1
19
B
11
C
26
-6.542
B_DC11:DG26_C
7
-7.550
-0.579
0.383
-0.488
-3.972
1
20
B
12
C
25
-2.576
B_DT12:DA25_C
8
-7.409
-0.338
0.197
-0.206
-5.104
1
20
B
13
C
24
-5.279
B_DT13:DA24_C
9
-11.522
-0.428
0.214
-0.302
-3.842
1
19
B
14
C
23
4.480
B_DC14:DG23_C
10
-9.477
-0.129
0.380
-0.261
-16.427
1
19
B
15
C
22
-0.375
B_DC15:DG22_C
11
-10.344
-0.074
0.513
-0.170
-3.600
1
19
B
16
C
21
-8.790
B_DC16:DG21_C
12
-6.227
0.099
-0.103
-0.263
0.136
1
19
B
17
C
20
1.453
B_DC17:DG20_C
13
-7.570
0.175
-0.220
-0.369
3.279
1
19
B
18
C
19
-9.435
B_DC18:DG19_C
14
-7.642
-0.075
-0.255
-0.297
2.566
24.249
B
B
5
6
30.387
C
C
32
31
3.604
12.187
0.019
-1.112
BB_KAG5DG6:DC31DC32_CC
1
1.720
-4.289
20.934
-6.561
0.508
3.081
30.171
B
B
6
7
14.680
C
C
31
30
3.271
7.557
-0.074
-0.352
BB_DG6DA7:DT30DC31_CC
2
-2.215
4.303
29.148
-2.196
-0.303
3.278
37.039
B
B
7
8
-0.168
C
C
30
29
3.248
-0.106
-0.523
-0.337
BB_DA7DA8:DT29DT30_CC
3
-2.825
4.452
36.935
-0.517
0.444
2.918
26.994
B
B
8
9
11.200
C
C
29
28
3.104
5.197
0.022
-0.690
BB_DA8DT9:DA28DT29_CC
4
-0.024
0.052
26.498
-2.709
-0.054
3.406
37.883
B
B
9
10
-4.723
C
C
28
27
3.411
-3.061
0.115
-0.220
BB_DT9DC10:DG27DA28_CC
5
-2.185
3.370
37.703
0.071
-0.469
3.529
32.218
B
B
10
11
9.661
C
C
27
26
3.701
5.334
-0.430
-0.890
BB_DC10DC11:DG26DG27_CC
6
-2.048
3.709
31.721
-2.663
0.369
3.320
34.177
B
B
11
12
-1.063
C
C
26
25
3.311
-0.624
0.252
-0.202
BB_DC11DT12:DA25DG26_CC
7
1.000
-1.703
34.157
-0.243
-0.269
3.138
32.880
B
B
12
13
8.931
C
C
25
24
3.238
5.033
0.350
-0.531
BB_DT12DT13:DA24DA25_CC
8
2.045
-3.629
32.440
-1.782
-0.275
3.030
36.194
B
B
13
14
11.478
C
C
24
23
3.215
7.082
0.618
-0.390
BB_DT13DC14:DG23DA24_CC
9
-2.675
4.335
35.420
-1.590
-1.358
3.295
29.568
B
B
14
15
10.429
C
C
23
22
3.512
5.294
-0.276
-0.877
BB_DC14DC15:DG22DG23_CC
10
0.838
-1.652
29.088
-2.896
0.727
2.757
32.220
B
B
15
16
10.198
C
C
22
21
3.019
5.615
-0.833
-0.481
BB_DC15DC16:DG21DG22_CC
11
4.332
-7.867
31.450
-1.762
2.190
3.230
32.175
B
B
16
17
17.567
C
C
21
20
3.284
9.570
1.614
-0.299
BB_DC16DC17:DG20DG21_CC
12
4.106
-7.537
30.486
-2.291
-2.160
3.407
32.412
B
B
17
18
5.949
C
C
20
19
3.337
3.311
-1.210
-0.046
BB_DC17DC18:DG19DG20_CC
13
-2.854
5.128
32.124
-0.686
1.647
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
pdbx_struct_conn_angle
struct_conn
struct_ref_seq_dif
struct_site
repository
Initial release
Database references
Data collection
Database references
Derived calculations
Refinement description
1
0
2013-08-28
1
1
2013-10-09
1
2
2023-09-20
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_asym_id
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
RCSB
2013-03-25
REL
REL
DTP
2'-DEOXYADENOSINE 5'-TRIPHOSPHATE
CA
CALCIUM ION
HOH
water
2BQU
PDB
experimental model
DTP
1000
4
DTP
DTP
1000
A
CA
1001
5
CA
CA
1001
A
CA
1002
5
CA
CA
1002
A
HOH
342
6
HOH
HOH
1101
A
HOH
343
6
HOH
HOH
1102
A
HOH
344
6
HOH
HOH
1103
A
HOH
345
6
HOH
HOH
1104
A
HOH
346
6
HOH
HOH
1105
A
HOH
347
6
HOH
HOH
1106
A
HOH
348
6
HOH
HOH
1107
A
HOH
349
6
HOH
HOH
1108
A
HOH
350
6
HOH
HOH
1109
A
HOH
351
6
HOH
HOH
1110
A
HOH
352
6
HOH
HOH
1111
A
HOH
353
6
HOH
HOH
1112
A
HOH
354
6
HOH
HOH
1113
A
HOH
355
6
HOH
HOH
1114
A
HOH
356
6
HOH
HOH
1115
A
HOH
357
6
HOH
HOH
1116
A
HOH
358
6
HOH
HOH
1117
A
HOH
359
6
HOH
HOH
1118
A
HOH
360
6
HOH
HOH
1119
A
HOH
361
6
HOH
HOH
1120
A
HOH
362
6
HOH
HOH
1121
A
HOH
363
6
HOH
HOH
1122
A
HOH
364
6
HOH
HOH
1123
A
HOH
365
6
HOH
HOH
1124
A
HOH
366
6
HOH
HOH
1125
A
HOH
25
6
HOH
HOH
101
B
HOH
1
6
HOH
HOH
102
B
HOH
29
6
HOH
HOH
103
B
HOH
30
6
HOH
HOH
104
B
HOH
32
6
HOH
HOH
105
B
HOH
33
6
HOH
HOH
106
B
HOH
34
6
HOH
HOH
107
B
HOH
35
6
HOH
HOH
108
B
HOH
38
6
HOH
HOH
109
B
HOH
39
6
HOH
HOH
110
B
HOH
40
6
HOH
HOH
111
B
HOH
4
6
HOH
HOH
101
C
HOH
18
6
HOH
HOH
102
C
HOH
33
6
HOH
HOH
103
C
HOH
34
6
HOH
HOH
104
C
HOH
35
6
HOH
HOH
105
C
HOH
41
6
HOH
HOH
106
C
HOH
43
6
HOH
HOH
107
C
HOH
45
6
HOH
HOH
108
C
n
1
-5
A
n
2
-4
A
n
3
-3
A
n
4
-2
A
n
5
-1
A
n
6
0
A
MET
1
n
7
MET
1
A
ILE
2
n
8
ILE
2
A
VAL
3
n
9
VAL
3
A
LEU
4
n
10
LEU
4
A
PHE
5
n
11
PHE
5
A
VAL
6
n
12
VAL
6
A
ASP
7
n
13
ASP
7
A
PHE
8
n
14
PHE
8
A
ASP
9
n
15
ASP
9
A
TYR
10
n
16
TYR
10
A
PHE
11
n
17
PHE
11
A
TYR
12
n
18
TYR
12
A
ALA
13
n
19
ALA
13
A
GLN
14
n
20
GLN
14
A
VAL
15
n
21
VAL
15
A
GLU
16
n
22
GLU
16
A
GLU
17
n
23
GLU
17
A
VAL
18
n
24
VAL
18
A
LEU
19
n
25
LEU
19
A
ASN
20
n
26
ASN
20
A
PRO
21
n
27
PRO
21
A
SER
22
n
28
SER
22
A
LEU
23
n
29
LEU
23
A
LYS
24
n
30
LYS
24
A
GLY
25
n
31
GLY
25
A
LYS
26
n
32
LYS
26
A
PRO
27
n
33
PRO
27
A
VAL
28
n
34
VAL
28
A
VAL
29
n
35
VAL
29
A
VAL
30
n
36
VAL
30
A
CYS
31
n
37
CYS
31
A
VAL
32
n
38
VAL
32
A
PHE
33
n
39
PHE
33
A
SER
34
n
40
SER
34
A
GLY
35
n
41
GLY
35
A
ARG
36
n
42
ARG
36
A
PHE
37
n
43
PHE
37
A
GLU
38
n
44
GLU
38
A
ASP
39
n
45
ASP
39
A
SER
40
n
46
SER
40
A
GLY
41
n
47
GLY
41
A
ALA
42
n
48
ALA
42
A
VAL
43
n
49
VAL
43
A
ALA
44
n
50
ALA
44
A
THR
45
n
51
THR
45
A
ALA
46
n
52
ALA
46
A
ASN
47
n
53
ASN
47
A
TYR
48
n
54
TYR
48
A
GLU
49
n
55
GLU
49
A
ALA
50
n
56
ALA
50
A
ARG
51
n
57
ARG
51
A
LYS
52
n
58
LYS
52
A
PHE
53
n
59
PHE
53
A
GLY
54
n
60
GLY
54
A
VAL
55
n
61
VAL
55
A
LYS
56
n
62
LYS
56
A
ALA
57
n
63
ALA
57
A
GLY
58
n
64
GLY
58
A
ILE
59
n
65
ILE
59
A
PRO
60
n
66
PRO
60
A
ILE
61
n
67
ILE
61
A
VAL
62
n
68
VAL
62
A
GLU
63
n
69
GLU
63
A
ALA
64
n
70
ALA
64
A
LYS
65
n
71
LYS
65
A
LYS
66
n
72
LYS
66
A
ILE
67
n
73
ILE
67
A
LEU
68
n
74
LEU
68
A
PRO
69
n
75
PRO
69
A
ASN
70
n
76
ASN
70
A
ALA
71
n
77
ALA
71
A
VAL
72
n
78
VAL
72
A
TYR
73
n
79
TYR
73
A
LEU
74
n
80
LEU
74
A
PRO
75
n
81
PRO
75
A
MET
76
n
82
MET
76
A
ARG
77
n
83
ARG
77
A
LYS
78
n
84
LYS
78
A
GLU
79
n
85
GLU
79
A
VAL
80
n
86
VAL
80
A
TYR
81
n
87
TYR
81
A
GLN
82
n
88
GLN
82
A
GLN
83
n
89
GLN
83
A
VAL
84
n
90
VAL
84
A
SER
85
n
91
SER
85
A
SER
86
n
92
SER
86
A
ARG
87
n
93
ARG
87
A
ILE
88
n
94
ILE
88
A
MET
89
n
95
MET
89
A
ASN
90
n
96
ASN
90
A
LEU
91
n
97
LEU
91
A
LEU
92
n
98
LEU
92
A
ARG
93
n
99
ARG
93
A
GLU
94
n
100
GLU
94
A
TYR
95
n
101
TYR
95
A
SER
96
n
102
SER
96
A
GLU
97
n
103
GLU
97
A
LYS
98
n
104
LYS
98
A
ILE
99
n
105
ILE
99
A
GLU
100
n
106
GLU
100
A
ILE
101
n
107
ILE
101
A
ALA
102
n
108
ALA
102
A
SER
103
n
109
SER
103
A
ILE
104
n
110
ILE
104
A
ASP
105
n
111
ASP
105
A
GLU
106
n
112
GLU
106
A
ALA
107
n
113
ALA
107
A
TYR
108
n
114
TYR
108
A
LEU
109
n
115
LEU
109
A
ASP
110
n
116
ASP
110
A
ILE
111
n
117
ILE
111
A
SER
112
n
118
SER
112
A
ASP
113
n
119
ASP
113
A
LYS
114
n
120
LYS
114
A
VAL
115
n
121
VAL
115
A
ARG
116
n
122
ARG
116
A
ASP
117
n
123
ASP
117
A
TYR
118
n
124
TYR
118
A
ARG
119
n
125
ARG
119
A
GLU
120
n
126
GLU
120
A
ALA
121
n
127
ALA
121
A
TYR
122
n
128
TYR
122
A
ASN
123
n
129
ASN
123
A
LEU
124
n
130
LEU
124
A
GLY
125
n
131
GLY
125
A
LEU
126
n
132
LEU
126
A
GLU
127
n
133
GLU
127
A
ILE
128
n
134
ILE
128
A
LYS
129
n
135
LYS
129
A
ASN
130
n
136
ASN
130
A
LYS
131
n
137
LYS
131
A
ILE
132
n
138
ILE
132
A
LEU
133
n
139
LEU
133
A
GLU
134
n
140
GLU
134
A
LYS
135
n
141
LYS
135
A
GLU
136
n
142
GLU
136
A
LYS
137
n
143
LYS
137
A
ILE
138
n
144
ILE
138
A
THR
139
n
145
THR
139
A
VAL
140
n
146
VAL
140
A
THR
141
n
147
THR
141
A
VAL
142
n
148
VAL
142
A
GLY
143
n
149
GLY
143
A
ILE
144
n
150
ILE
144
A
SER
145
n
151
SER
145
A
LYS
146
n
152
LYS
146
A
ASN
147
n
153
ASN
147
A
LYS
148
n
154
LYS
148
A
VAL
149
n
155
VAL
149
A
PHE
150
n
156
PHE
150
A
ALA
151
n
157
ALA
151
A
LYS
152
n
158
LYS
152
A
ILE
153
n
159
ILE
153
A
ALA
154
n
160
ALA
154
A
ALA
155
n
161
ALA
155
A
ASP
156
n
162
ASP
156
A
MET
157
n
163
MET
157
A
ALA
158
n
164
ALA
158
A
LYS
159
n
165
LYS
159
A
PRO
160
n
166
PRO
160
A
ASN
161
n
167
ASN
161
A
GLY
162
n
168
GLY
162
A
ILE
163
n
169
ILE
163
A
LYS
164
n
170
LYS
164
A
VAL
165
n
171
VAL
165
A
ILE
166
n
172
ILE
166
A
ASP
167
n
173
ASP
167
A
ASP
168
n
174
ASP
168
A
GLU
169
n
175
GLU
169
A
GLU
170
n
176
GLU
170
A
VAL
171
n
177
VAL
171
A
LYS
172
n
178
LYS
172
A
ARG
173
n
179
ARG
173
A
LEU
174
n
180
LEU
174
A
ILE
175
n
181
ILE
175
A
ARG
176
n
182
ARG
176
A
GLU
177
n
183
GLU
177
A
LEU
178
n
184
LEU
178
A
ASP
179
n
185
ASP
179
A
ILE
180
n
186
ILE
180
A
ALA
181
n
187
ALA
181
A
ASP
182
n
188
ASP
182
A
VAL
183
n
189
VAL
183
A
PRO
184
n
190
PRO
184
A
GLY
185
n
191
GLY
185
A
ILE
186
n
192
ILE
186
A
GLY
187
n
193
GLY
187
A
ASN
188
n
194
ASN
188
A
ILE
189
n
195
ILE
189
A
THR
190
n
196
THR
190
A
ALA
191
n
197
ALA
191
A
GLU
192
n
198
GLU
192
A
LYS
193
n
199
LYS
193
A
LEU
194
n
200
LEU
194
A
LYS
195
n
201
LYS
195
A
LYS
196
n
202
LYS
196
A
LEU
197
n
203
LEU
197
A
GLY
198
n
204
GLY
198
A
ILE
199
n
205
ILE
199
A
ASN
200
n
206
ASN
200
A
LYS
201
n
207
LYS
201
A
LEU
202
n
208
LEU
202
A
VAL
203
n
209
VAL
203
A
ASP
204
n
210
ASP
204
A
THR
205
n
211
THR
205
A
LEU
206
n
212
LEU
206
A
SER
207
n
213
SER
207
A
ILE
208
n
214
ILE
208
A
GLU
209
n
215
GLU
209
A
PHE
210
n
216
PHE
210
A
ASP
211
n
217
ASP
211
A
LYS
212
n
218
LYS
212
A
LEU
213
n
219
LEU
213
A
LYS
214
n
220
LYS
214
A
GLY
215
n
221
GLY
215
A
MET
216
n
222
MET
216
A
ILE
217
n
223
ILE
217
A
GLY
218
n
224
GLY
218
A
GLU
219
n
225
GLU
219
A
ALA
220
n
226
ALA
220
A
LYS
221
n
227
LYS
221
A
ALA
222
n
228
ALA
222
A
LYS
223
n
229
LYS
223
A
TYR
224
n
230
TYR
224
A
LEU
225
n
231
LEU
225
A
ILE
226
n
232
ILE
226
A
SER
227
n
233
SER
227
A
LEU
228
n
234
LEU
228
A
ALA
229
n
235
ALA
229
A
ARG
230
n
236
ARG
230
A
ASP
231
n
237
ASP
231
A
GLU
232
n
238
GLU
232
A
TYR
233
n
239
TYR
233
A
ASN
234
n
240
ASN
234
A
GLU
235
n
241
GLU
235
A
PRO
236
n
242
PRO
236
A
ILE
237
n
243
ILE
237
A
ARG
238
n
244
ARG
238
A
THR
239
n
245
THR
239
A
ARG
240
n
246
ARG
240
A
VAL
241
n
247
VAL
241
A
ARG
242
n
248
ARG
242
A
LYS
243
n
249
LYS
243
A
SER
244
n
250
SER
244
A
ILE
245
n
251
ILE
245
A
GLY
246
n
252
GLY
246
A
ARG
247
n
253
ARG
247
A
ILE
248
n
254
ILE
248
A
VAL
249
n
255
VAL
249
A
THR
250
n
256
THR
250
A
MET
251
n
257
MET
251
A
LYS
252
n
258
LYS
252
A
ARG
253
n
259
ARG
253
A
ASN
254
n
260
ASN
254
A
SER
255
n
261
SER
255
A
ARG
256
n
262
ARG
256
A
ASN
257
n
263
ASN
257
A
LEU
258
n
264
LEU
258
A
GLU
259
n
265
GLU
259
A
GLU
260
n
266
GLU
260
A
ILE
261
n
267
ILE
261
A
LYS
262
n
268
LYS
262
A
PRO
263
n
269
PRO
263
A
TYR
264
n
270
TYR
264
A
LEU
265
n
271
LEU
265
A
PHE
266
n
272
PHE
266
A
ARG
267
n
273
ARG
267
A
ALA
268
n
274
ALA
268
A
ILE
269
n
275
ILE
269
A
GLU
270
n
276
GLU
270
A
GLU
271
n
277
GLU
271
A
SER
272
n
278
SER
272
A
TYR
273
n
279
TYR
273
A
TYR
274
n
280
TYR
274
A
LYS
275
n
281
LYS
275
A
LEU
276
n
282
LEU
276
A
ASP
277
n
283
ASP
277
A
LYS
278
n
284
LYS
278
A
ARG
279
n
285
ARG
279
A
ILE
280
n
286
ILE
280
A
PRO
281
n
287
PRO
281
A
LYS
282
n
288
LYS
282
A
ALA
283
n
289
ALA
283
A
ILE
284
n
290
ILE
284
A
HIS
285
n
291
HIS
285
A
VAL
286
n
292
VAL
286
A
VAL
287
n
293
VAL
287
A
ALA
288
n
294
ALA
288
A
VAL
289
n
295
VAL
289
A
THR
290
n
296
THR
290
A
GLU
291
n
297
GLU
291
A
ASP
292
n
298
ASP
292
A
LEU
293
n
299
LEU
293
A
ASP
294
n
300
ASP
294
A
ILE
295
n
301
ILE
295
A
VAL
296
n
302
VAL
296
A
SER
297
n
303
SER
297
A
ARG
298
n
304
ARG
298
A
GLY
299
n
305
GLY
299
A
ARG
300
n
306
ARG
300
A
THR
301
n
307
THR
301
A
PHE
302
n
308
PHE
302
A
PRO
303
n
309
PRO
303
A
HIS
304
n
310
HIS
304
A
GLY
305
n
311
GLY
305
A
ILE
306
n
312
ILE
306
A
SER
307
n
313
SER
307
A
LYS
308
n
314
LYS
308
A
GLU
309
n
315
GLU
309
A
THR
310
n
316
THR
310
A
ALA
311
n
317
ALA
311
A
TYR
312
n
318
TYR
312
A
SER
313
n
319
SER
313
A
GLU
314
n
320
GLU
314
A
SER
315
n
321
SER
315
A
VAL
316
n
322
VAL
316
A
LYS
317
n
323
LYS
317
A
LEU
318
n
324
LEU
318
A
LEU
319
n
325
LEU
319
A
GLN
320
n
326
GLN
320
A
LYS
321
n
327
LYS
321
A
ILE
322
n
328
ILE
322
A
LEU
323
n
329
LEU
323
A
GLU
324
n
330
GLU
324
A
GLU
325
n
331
GLU
325
A
ASP
326
n
332
ASP
326
A
GLU
327
n
333
GLU
327
A
ARG
328
n
334
ARG
328
A
LYS
329
n
335
LYS
329
A
ILE
330
n
336
ILE
330
A
ARG
331
n
337
ARG
331
A
ARG
332
n
338
ARG
332
A
ILE
333
n
339
ILE
333
A
GLY
334
n
340
GLY
334
A
VAL
335
n
341
VAL
335
A
ARG
336
n
342
ARG
336
A
PHE
337
n
343
PHE
337
A
SER
338
n
344
SER
338
A
LYS
339
n
345
LYS
339
A
PHE
340
n
346
PHE
340
A
ILE
341
n
347
ILE
341
A
DT
4
n
1
DT
4
B
KAG
5
n
2
KAG
5
B
DG
6
n
3
DG
6
B
DA
7
n
4
DA
7
B
DA
8
n
5
DA
8
B
DT
9
n
6
DT
9
B
DC
10
n
7
DC
10
B
DC
11
n
8
DC
11
B
DT
12
n
9
DT
12
B
DT
13
n
10
DT
13
B
DC
14
n
11
DC
14
B
DC
15
n
12
DC
15
B
DC
16
n
13
DC
16
B
DC
17
n
14
DC
17
B
DC
18
n
15
DC
18
B
DG
19
n
1
DG
19
C
DG
20
n
2
DG
20
C
DG
21
n
3
DG
21
C
DG
22
n
4
DG
22
C
DG
23
n
5
DG
23
C
DA
24
n
6
DA
24
C
DA
25
n
7
DA
25
C
DG
26
n
8
DG
26
C
DG
27
n
9
DG
27
C
DA
28
n
10
DA
28
C
DT
29
n
11
DT
29
C
DT
30
n
12
DT
30
C
DC
31
n
13
DC
31
C
DC
32
n
14
DC
32
C
author_and_software_defined_assembly
PISA
3
trimeric
6070
-52
19890
A
ASP
7
A
OD1
ASP
13
1_555
A
CA
1001
E
CA
CA
1_555
A
PHE
8
A
O
PHE
14
1_555
102.6
A
ASP
7
A
OD1
ASP
13
1_555
A
CA
1001
E
CA
CA
1_555
A
ASP
105
A
OD2
ASP
111
1_555
67.5
A
PHE
8
A
O
PHE
14
1_555
A
CA
1001
E
CA
CA
1_555
A
ASP
105
A
OD2
ASP
111
1_555
74.0
A
ASP
7
A
OD1
ASP
13
1_555
A
CA
1001
E
CA
CA
1_555
A
DTP
1000
D
O1G
DTP
1_555
118.7
A
PHE
8
A
O
PHE
14
1_555
A
CA
1001
E
CA
CA
1_555
A
DTP
1000
D
O1G
DTP
1_555
137.6
A
ASP
105
A
OD2
ASP
111
1_555
A
CA
1001
E
CA
CA
1_555
A
DTP
1000
D
O1G
DTP
1_555
129.4
A
ASP
7
A
OD1
ASP
13
1_555
A
CA
1001
E
CA
CA
1_555
A
DTP
1000
D
O1A
DTP
1_555
81.1
A
PHE
8
A
O
PHE
14
1_555
A
CA
1001
E
CA
CA
1_555
A
DTP
1000
D
O1A
DTP
1_555
125.9
A
ASP
105
A
OD2
ASP
111
1_555
A
CA
1001
E
CA
CA
1_555
A
DTP
1000
D
O1A
DTP
1_555
57.6
A
DTP
1000
D
O1G
DTP
1_555
A
CA
1001
E
CA
CA
1_555
A
DTP
1000
D
O1A
DTP
1_555
73.3
A
ASP
7
A
OD1
ASP
13
1_555
A
CA
1001
E
CA
CA
1_555
A
DTP
1000
D
O2B
DTP
1_555
138.5
A
PHE
8
A
O
PHE
14
1_555
A
CA
1001
E
CA
CA
1_555
A
DTP
1000
D
O2B
DTP
1_555
76.3
A
ASP
105
A
OD2
ASP
111
1_555
A
CA
1001
E
CA
CA
1_555
A
DTP
1000
D
O2B
DTP
1_555
72.6
A
DTP
1000
D
O1G
DTP
1_555
A
CA
1001
E
CA
CA
1_555
A
DTP
1000
D
O2B
DTP
1_555
79.0
A
DTP
1000
D
O1A
DTP
1_555
A
CA
1001
E
CA
CA
1_555
A
DTP
1000
D
O2B
DTP
1_555
68.0
A
ALA
181
A
O
ALA
187
1_555
A
CA
1002
F
CA
CA
1_555
A
ILE
186
A
O
ILE
192
1_555
74.1
A
ALA
181
A
O
ALA
187
1_555
A
CA
1002
F
CA
CA
1_555
A
HOH
1101
G
O
HOH
1_555
70.0
A
ILE
186
A
O
ILE
192
1_555
A
CA
1002
F
CA
CA
1_555
A
HOH
1101
G
O
HOH
1_555
128.1
A
ALA
181
A
O
ALA
187
1_555
A
CA
1002
F
CA
CA
1_555
A
HOH
1102
G
O
HOH
1_555
88.4
A
ILE
186
A
O
ILE
192
1_555
A
CA
1002
F
CA
CA
1_555
A
HOH
1102
G
O
HOH
1_555
88.7
A
HOH
1101
G
O
HOH
1_555
A
CA
1002
F
CA
CA
1_555
A
HOH
1102
G
O
HOH
1_555
125.5
A
ALA
181
A
O
ALA
187
1_555
A
CA
1002
F
CA
CA
1_555
C
HOH
101
I
O
HOH
1_555
67.4
A
ILE
186
A
O
ILE
192
1_555
A
CA
1002
F
CA
CA
1_555
C
HOH
101
I
O
HOH
1_555
65.7
A
HOH
1101
G
O
HOH
1_555
A
CA
1002
F
CA
CA
1_555
C
HOH
101
I
O
HOH
1_555
66.5
A
HOH
1102
G
O
HOH
1_555
A
CA
1002
F
CA
CA
1_555
C
HOH
101
I
O
HOH
1_555
148.3
B
KAG
5
B
KAG
2
G
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
GLU
100
A
N
GLU
106
A
O
TYR
108
A
O
TYR
114
A
O
LEU
109
A
O
LEU
115
A
N
LEU
4
A
N
LEU
10
A
N
VAL
3
A
N
VAL
9
A
O
SER
145
A
O
SER
151
A
N
ILE
144
A
N
ILE
150
A
O
LYS
164
A
O
LYS
170
A
O
THR
45
A
O
THR
51
A
N
VAL
30
A
N
VAL
36
A
N
CYS
31
A
N
CYS
37
A
O
LEU
74
A
O
LEU
80
A
N
ILE
245
A
N
ILE
251
A
O
PHE
337
A
O
PHE
343
A
O
ARG
331
A
O
ARG
337
A
N
VAL
289
A
N
VAL
295
A
N
VAL
286
A
N
VAL
292
A
O
ARG
298
A
O
ARG
304
1
B
C1M
KAG
5
B
C1M
KAG
2
1
Y
1
A
HIS
-5
A
HIS
1
1
Y
1
A
HIS
-4
A
HIS
2
1
Y
1
A
HIS
-3
A
HIS
3
1
Y
1
A
HIS
-2
A
HIS
4
1
Y
1
A
HIS
-1
A
HIS
5
1
Y
1
A
HIS
0
A
HIS
6
1
Y
1
A
B
O
O
HOH
HOH
1121
105
1.98
1
A
A
OE1
O
GLU
HOH
106
1122
2.00
1
A
A
O
O
ILE
HOH
2
1123
2.05
1
A
A
NH2
OD1
ARG
ASN
36
254
2.07
1
A
B
NH1
OP1
ARG
DA
242
8
2.10
1
A
A
O1A
O
DTP
HOH
1000
1122
2.12
1
B
B
O
O
HOH
HOH
110
111
2.14
1
B
B
O
O
HOH
HOH
105
106
2.15
1
A
A
O
OG1
LEU
THR
202
205
2.16
1
A
A
OD2
O
ASP
HOH
294
1116
2.18
1
A
A
NH2
O
ARG
HOH
267
1111
2.18
1
A
A
N
O
ILE
HOH
111
1123
2.19
1
A
B
O
O
HOH
HOH
1121
104
2.19
1
-16.88
2.20
105.20
88.32
B
B
B
O3'
P
OP2
DT
KAG
KAG
4
5
5
Y
1
23.75
1.10
110.50
134.25
B
B
B
O3'
P
OP1
DT
KAG
KAG
4
5
5
Y
1
-6.77
0.80
109.40
102.63
B
B
B
O5'
C5'
C4'
DG
DG
DG
6
6
6
N
1
-6.79
1.00
110.10
103.31
B
B
B
C1'
O4'
C4'
DA
DA
DA
7
7
7
N
1
-4.86
0.80
102.40
97.54
B
B
B
C3'
C2'
C1'
DA
DA
DA
7
7
7
N
1
-7.81
0.80
105.90
98.09
B
B
B
O4'
C1'
C2'
DA
DA
DA
7
7
7
N
1
5.73
0.30
108.30
114.03
B
B
B
O4'
C1'
N9
DA
DA
DA
7
7
7
N
1
-5.44
0.70
108.00
102.56
B
B
B
O4'
C1'
N9
DA
DA
DA
8
8
8
N
1
4.64
0.30
108.30
112.94
B
B
B
O4'
C1'
N1
DC
DC
DC
11
11
11
N
1
3.90
0.60
119.90
123.80
B
B
B
N3
C4
O4
DT
DT
DT
12
12
12
N
1
-2.81
0.40
104.50
101.69
B
B
B
O4'
C4'
C3'
DC
DC
DC
15
15
15
N
1
-7.35
1.00
110.10
102.75
B
B
B
C1'
O4'
C4'
DC
DC
DC
15
15
15
N
1
5.79
0.30
108.30
114.09
B
B
B
O4'
C1'
N1
DC
DC
DC
17
17
17
N
1
-6.32
0.80
102.40
96.08
B
B
B
C3'
C2'
C1'
DC
DC
DC
18
18
18
N
1
3.23
0.30
108.30
111.53
C
C
C
O4'
C1'
N9
DG
DG
DG
21
21
21
N
1
3.91
0.30
108.30
112.21
C
C
C
O4'
C1'
N9
DG
DG
DG
22
22
22
N
1
-5.91
0.80
109.40
103.49
C
C
C
O5'
C5'
C4'
DA
DA
DA
24
24
24
N
1
6.04
0.30
108.30
114.34
C
C
C
O4'
C1'
N1
DC
DC
DC
31
31
31
N
1
7.69
0.30
108.30
115.99
C
C
C
O4'
C1'
N1
DC
DC
DC
32
32
32
N
1
B
B
O3'
C3'
DG
DG
6
6
-0.037
0.006
1.419
1.382
N
1
A
TYR
10
24.12
51.52
1
A
ASN
20
-165.30
78.40
1
A
ARG
36
-72.65
-80.43
1
A
LEU
68
-118.71
63.12
1
A
ARG
93
-56.09
-9.61
1
A
ASP
105
-143.09
12.58
1
A
ASP
113
-64.88
10.21
1
A
ASP
117
-173.13
-173.54
1
A
SER
145
-166.42
-161.96
1
A
ASN
161
45.26
23.63
1
A
ASP
231
30.96
53.60
1
A
GLU
232
-141.89
12.47
1
A
ASN
234
-158.73
45.24
1
A
ASP
277
53.16
86.94
127.780
71.5388
45.960
14.4796
0.0000
0.0000
3.7151
-0.0000
-18.1947
0.2700
0.1920
0.2000
2.9500
34.9100
1118
11170
10.0100
98.1000
1.000
0.000
0.8100
1
1.360
MOLECULAR REPLACEMENT
29.0500
0.8600
1.1000
2BQU
ML
FLAT BULK SOLVENT MODEL
37.1600
0.3200
2.9500
34.9100
44
3415
32
595
2744
0.009
1.3
0.4542
0.3007
3.0844
125
1123
1248
8
90.0000
0.3177
0.2469
3.2469
133
1203
1336
8
96.0000
0.3197
0.2071
3.4502
139
1252
1391
8
100.0000
0.2916
0.1949
3.7163
141
1258
1399
8
100.0000
0.2716
0.1823
4.0898
141
1270
1411
8
100.0000
0.2230
0.1459
4.6804
142
1289
1431
8
100.0000
0.2150
0.1752
5.8922
144
1296
1440
8
100.0000
0.2709
0.2010
34.9077
153
1361
1514
8
100.0000
2.950
50.000
4JV0
11170
0.000
0.124
1
0.565
2.9
3.0
1
refinement
Paul D. Adams
PDAdams@lbl.gov
C++
http://www.phenix-online.org/
PHENIX
package
1.7.2_869
data extraction
PDB
deposit@deposit.rcsb.org
April 22, 2011
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.11
data reduction
HKL-2000
data scaling
HKL-2000
phasing
CNS
Ring-Opening of the -OH-PdG Adduct in Ternary Complexes with the Sulfolobus solfataricus DNA polymerase Dpo4
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
5
N
N
6
N
N
6
N
N
6
N
N
A
TYR
10
A
TYR
16
HELX_P
A
LEU
19
A
LEU
25
1
1
10
A
ASN
20
A
ASN
26
HELX_P
A
LYS
24
A
LYS
30
5
2
5
A
ASN
47
A
ASN
53
HELX_P
A
LYS
52
A
LYS
58
1
3
6
A
PRO
60
A
PRO
66
HELX_P
A
LEU
68
A
LEU
74
1
4
9
A
ARG
77
A
ARG
83
HELX_P
A
ARG
93
A
ARG
99
1
5
17
A
ASP
117
A
ASP
123
HELX_P
A
LYS
137
A
LYS
143
1
6
21
A
ASN
147
A
ASN
153
HELX_P
A
LYS
159
A
LYS
165
1
7
13
A
ASP
167
A
ASP
173
HELX_P
A
LEU
178
A
LEU
184
1
8
12
A
ASP
179
A
ASP
185
HELX_P
A
VAL
183
A
VAL
189
5
9
5
A
GLY
187
A
GLY
193
HELX_P
A
LYS
196
A
LYS
202
1
10
10
A
LYS
201
A
LYS
207
HELX_P
A
LEU
206
A
LEU
212
5
11
6
A
GLU
209
A
GLU
215
HELX_P
A
GLY
218
A
GLY
224
1
12
10
A
GLY
218
A
GLY
224
HELX_P
A
ARG
230
A
ARG
236
1
13
13
A
ASN
257
A
ASN
263
HELX_P
A
ASP
277
A
ASP
283
1
14
21
A
SER
307
A
SER
313
HELX_P
A
ASP
326
A
ASP
332
1
15
20
covale
1.615
both
B
DT
4
B
O3'
DT
1
1_555
B
KAG
5
B
P
KAG
2
1_555
covale
1.600
both
B
KAG
5
B
O3'
KAG
2
1_555
B
DG
6
B
P
DG
3
1_555
metalc
2.879
A
ASP
7
A
OD1
ASP
13
1_555
A
CA
1001
E
CA
CA
1_555
metalc
2.670
A
PHE
8
A
O
PHE
14
1_555
A
CA
1001
E
CA
CA
1_555
metalc
2.690
A
ASP
105
A
OD2
ASP
111
1_555
A
CA
1001
E
CA
CA
1_555
metalc
2.887
A
ALA
181
A
O
ALA
187
1_555
A
CA
1002
F
CA
CA
1_555
metalc
2.876
A
ILE
186
A
O
ILE
192
1_555
A
CA
1002
F
CA
CA
1_555
metalc
2.835
A
DTP
1000
D
O1G
DTP
1_555
A
CA
1001
E
CA
CA
1_555
metalc
2.843
A
DTP
1000
D
O1A
DTP
1_555
A
CA
1001
E
CA
CA
1_555
metalc
2.883
A
DTP
1000
D
O2B
DTP
1_555
A
CA
1001
E
CA
CA
1_555
metalc
2.975
A
CA
1002
F
CA
CA
1_555
A
HOH
1101
G
O
HOH
1_555
metalc
3.089
A
CA
1002
F
CA
CA
1_555
A
HOH
1102
G
O
HOH
1_555
metalc
2.950
A
CA
1002
F
CA
CA
1_555
C
HOH
101
I
O
HOH
1_555
hydrog
WATSON-CRICK
B
KAG
5
B
N1
KAG
2
1_555
C
DC
32
C
N3
DC
14
1_555
hydrog
WATSON-CRICK
B
KAG
5
B
N2
KAG
2
1_555
C
DC
32
C
O2
DC
14
1_555
hydrog
WATSON-CRICK
B
KAG
5
B
O6
KAG
2
1_555
C
DC
32
C
N4
DC
14
1_555
hydrog
WATSON-CRICK
B
DG
6
B
N1
DG
3
1_555
C
DC
31
C
N3
DC
13
1_555
hydrog
WATSON-CRICK
B
DG
6
B
N2
DG
3
1_555
C
DC
31
C
O2
DC
13
1_555
hydrog
WATSON-CRICK
B
DG
6
B
O6
DG
3
1_555
C
DC
31
C
N4
DC
13
1_555
hydrog
WATSON-CRICK
B
DA
7
B
N1
DA
4
1_555
C
DT
30
C
N3
DT
12
1_555
hydrog
WATSON-CRICK
B
DA
7
B
N6
DA
4
1_555
C
DT
30
C
O4
DT
12
1_555
hydrog
WATSON-CRICK
B
DA
8
B
N1
DA
5
1_555
C
DT
29
C
N3
DT
11
1_555
hydrog
WATSON-CRICK
B
DA
8
B
N6
DA
5
1_555
C
DT
29
C
O4
DT
11
1_555
hydrog
WATSON-CRICK
B
DT
9
B
N3
DT
6
1_555
C
DA
28
C
N1
DA
10
1_555
hydrog
WATSON-CRICK
B
DT
9
B
O4
DT
6
1_555
C
DA
28
C
N6
DA
10
1_555
hydrog
WATSON-CRICK
B
DC
10
B
N3
DC
7
1_555
C
DG
27
C
N1
DG
9
1_555
hydrog
WATSON-CRICK
B
DC
10
B
N4
DC
7
1_555
C
DG
27
C
O6
DG
9
1_555
hydrog
WATSON-CRICK
B
DC
10
B
O2
DC
7
1_555
C
DG
27
C
N2
DG
9
1_555
hydrog
WATSON-CRICK
B
DC
11
B
N3
DC
8
1_555
C
DG
26
C
N1
DG
8
1_555
hydrog
WATSON-CRICK
B
DC
11
B
N4
DC
8
1_555
C
DG
26
C
O6
DG
8
1_555
hydrog
WATSON-CRICK
B
DC
11
B
O2
DC
8
1_555
C
DG
26
C
N2
DG
8
1_555
hydrog
WATSON-CRICK
B
DT
12
B
N3
DT
9
1_555
C
DA
25
C
N1
DA
7
1_555
hydrog
WATSON-CRICK
B
DT
12
B
O4
DT
9
1_555
C
DA
25
C
N6
DA
7
1_555
hydrog
WATSON-CRICK
B
DT
13
B
N3
DT
10
1_555
C
DA
24
C
N1
DA
6
1_555
hydrog
WATSON-CRICK
B
DT
13
B
O4
DT
10
1_555
C
DA
24
C
N6
DA
6
1_555
hydrog
WATSON-CRICK
B
DC
14
B
N3
DC
11
1_555
C
DG
23
C
N1
DG
5
1_555
hydrog
WATSON-CRICK
B
DC
14
B
N4
DC
11
1_555
C
DG
23
C
O6
DG
5
1_555
hydrog
WATSON-CRICK
B
DC
14
B
O2
DC
11
1_555
C
DG
23
C
N2
DG
5
1_555
hydrog
WATSON-CRICK
B
DC
15
B
N3
DC
12
1_555
C
DG
22
C
N1
DG
4
1_555
hydrog
WATSON-CRICK
B
DC
15
B
N4
DC
12
1_555
C
DG
22
C
O6
DG
4
1_555
hydrog
WATSON-CRICK
B
DC
15
B
O2
DC
12
1_555
C
DG
22
C
N2
DG
4
1_555
hydrog
WATSON-CRICK
B
DC
16
B
N3
DC
13
1_555
C
DG
21
C
N1
DG
3
1_555
hydrog
WATSON-CRICK
B
DC
16
B
N4
DC
13
1_555
C
DG
21
C
O6
DG
3
1_555
hydrog
WATSON-CRICK
B
DC
16
B
O2
DC
13
1_555
C
DG
21
C
N2
DG
3
1_555
hydrog
WATSON-CRICK
B
DC
17
B
N3
DC
14
1_555
C
DG
20
C
N1
DG
2
1_555
hydrog
WATSON-CRICK
B
DC
17
B
N4
DC
14
1_555
C
DG
20
C
O6
DG
2
1_555
hydrog
WATSON-CRICK
B
DC
17
B
O2
DC
14
1_555
C
DG
20
C
N2
DG
2
1_555
hydrog
WATSON-CRICK
B
DC
18
B
N3
DC
15
1_555
C
DG
19
C
N1
DG
1
1_555
hydrog
WATSON-CRICK
B
DC
18
B
N4
DC
15
1_555
C
DG
19
C
O6
DG
1
1_555
hydrog
WATSON-CRICK
B
DC
18
B
O2
DC
15
1_555
C
DG
19
C
N2
DG
1
1_555
TRANSFERASE/DNA
TERNARY COMPLEX OF DPO4-DNA-DATP, DNA POLYMERASE, DNA ADDUCT, TRANSFERASE-DNA COMPLEX
A
LYS
159
A
LYS
165
1
A
PRO
160
A
PRO
166
1.81
DPO4_SULSO
UNP
1
1
Q97W02
MIVLFVDFDYFYAQVEEVLNPSLKGKPVVVCVFSGRFEDSGAVATANYEARKFGVKAGIPIVEAKKILPNAVYLPMRKEV
YQQVSSRIMNLLREYSEKIEIASIDEAYLDISDKVRDYREAYNLGLEIKNKILEKEKITVTVGISKNKVFAKIAADMAKP
NGIKVIDDEEVKRLIRELDIADVPGIGNITAEKLKKLGINKLVDTLSIEFDKLKGMIGEAKAKYLISLARDEYNEPIRTR
VRKSIGRIVTMKRNSRNLEEIKPYLFRAIEESYYKLDKRIPKAIHVVAVTEDLDIVSRGRTFPHGISKETAYSESVKLLQ
KILEEDERKIRRIGVRFSKFI
4JV0
PDB
2
4JV0
4JV0
PDB
3
4JV0
1
341
4JV0
1
341
Q97W02
A
1
7
347
4
18
4JV0
4
18
4JV0
B
2
1
15
19
32
4JV0
19
32
4JV0
C
3
1
14
1
expression tag
HIS
-5
4JV0
A
Q97W02
UNP
1
1
expression tag
HIS
-4
4JV0
A
Q97W02
UNP
2
1
expression tag
HIS
-3
4JV0
A
Q97W02
UNP
3
1
expression tag
HIS
-2
4JV0
A
Q97W02
UNP
4
1
expression tag
HIS
-1
4JV0
A
Q97W02
UNP
5
1
expression tag
HIS
0
4JV0
A
Q97W02
UNP
6
5
3
4
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
A
ILE
99
A
ILE
105
A
ILE
101
A
ILE
107
A
GLU
106
A
GLU
112
A
ASP
110
A
ASP
116
A
VAL
3
A
VAL
9
A
PHE
8
A
PHE
14
A
VAL
140
A
VAL
146
A
SER
145
A
SER
151
A
ILE
163
A
ILE
169
A
VAL
165
A
VAL
171
A
GLY
41
A
GLY
47
A
ALA
46
A
ALA
52
A
VAL
28
A
VAL
34
A
PHE
33
A
PHE
39
A
VAL
72
A
VAL
78
A
PRO
75
A
PRO
81
A
SER
244
A
SER
250
A
SER
255
A
SER
261
A
ILE
330
A
ILE
336
A
PHE
340
A
PHE
346
A
PRO
281
A
PRO
287
A
THR
290
A
THR
296
A
ILE
295
A
ILE
301
A
THR
301
A
THR
307
BINDING SITE FOR RESIDUE DTP A 1000
A
DTP
1000
Software
16
BINDING SITE FOR RESIDUE CA A 1001
A
CA
1001
Software
4
BINDING SITE FOR RESIDUE CA A 1002
A
CA
1002
Software
5
A
PHE
8
A
PHE
14
16
1_555
A
ASP
9
A
ASP
15
16
1_555
A
TYR
10
A
TYR
16
16
1_555
A
PHE
11
A
PHE
17
16
1_555
A
TYR
12
A
TYR
18
16
1_555
A
ALA
44
A
ALA
50
16
1_555
A
THR
45
A
THR
51
16
1_555
A
TYR
48
A
TYR
54
16
1_555
A
ARG
51
A
ARG
57
16
1_555
A
ASP
105
A
ASP
111
16
1_555
A
LYS
159
A
LYS
165
16
1_555
A
CA
1001
E
CA
16
1_555
A
HOH
1122
G
HOH
16
1_555
B
DT
4
B
DT
1
16
1_555
B
KAG
5
B
KAG
2
16
1_555
C
DC
32
C
DC
14
16
1_555
A
ASP
7
A
ASP
13
4
1_555
A
PHE
8
A
PHE
14
4
1_555
A
ASP
105
A
ASP
111
4
1_555
A
DTP
1000
D
DTP
4
1_555
A
ALA
181
A
ALA
187
5
1_555
A
ILE
186
A
ILE
192
5
1_555
A
HOH
1101
G
HOH
5
1_555
A
HOH
1102
G
HOH
5
1_555
C
HOH
101
I
HOH
5
1_555
18
P 21 21 2