0.019829
0.000000
0.006150
0.000000
0.012575
0.000000
0.000000
0.000000
0.018919
0.00000
0.00000
0.00000
Batra, V.K.
Perera, L.
Ping, L.
Shock, D.D.
Beard, W.A.
Pedersen, L.C.
Pedersen, L.G.
Wilson, S.H.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
2
90.00
107.23
90.00
50.430
79.520
55.340
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Cl -1
35.453
CHLORIDE ION
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
C9 H16 N3 O13 P3
467.157
2'-DEOXYURIDINE 5'-ALPHA,BETA-IMIDO-TRIPHOSPHATE
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Mg 2
24.305
MAGNESIUM ION
non-polymer
Na 1
22.990
SODIUM ION
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
CL
N
75
N
N
N
76
R
C
N
77
N
C
N
78
N
O
N
79
N
C
N
80
N
S
N
81
N
O
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
O
N
90
N
P
N
91
N
O
N
92
N
O
N
93
N
O
N
94
N
C
N
95
R
C
N
96
N
O
N
97
S
C
N
98
N
O
N
99
N
C
N
100
R
C
Y
101
N
N
Y
102
N
C
Y
103
N
N
Y
104
N
C
Y
105
N
C
N
106
N
N
Y
107
N
N
Y
108
N
C
Y
109
N
N
Y
110
N
C
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
O
N
126
N
P
N
127
N
O
N
128
N
O
N
129
N
O
N
130
N
C
N
131
R
C
N
132
N
O
N
133
S
C
N
134
N
O
N
135
N
C
N
136
R
C
N
137
N
N
N
138
N
C
N
139
N
O
N
140
N
N
N
141
N
C
N
142
N
N
N
143
N
C
N
144
N
C
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
O
N
160
N
P
N
161
N
O
N
162
N
O
N
163
N
O
N
164
N
C
N
165
R
C
N
166
N
O
N
167
S
C
N
168
N
O
N
169
N
C
N
170
R
C
Y
171
N
N
Y
172
N
C
Y
173
N
N
Y
174
N
C
N
175
N
C
N
176
N
O
N
177
N
N
N
178
N
C
N
179
N
N
N
180
N
N
Y
181
N
C
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
O
N
197
N
P
N
198
N
O
N
199
N
O
N
200
N
O
N
201
N
C
N
202
R
C
N
203
N
O
N
204
S
C
N
205
N
O
N
206
N
C
N
207
R
C
N
208
N
N
N
209
N
C
N
210
N
O
N
211
N
N
N
212
N
C
N
213
N
O
N
214
N
C
N
215
N
C
N
216
N
C
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
O
Y
233
N
C
Y
234
N
C
Y
235
N
C
Y
236
N
N
Y
237
N
C
N
238
N
O
Y
239
N
N
N
240
R
C
N
241
N
C
N
242
S
C
N
243
N
O
N
244
N
O
N
245
R
C
N
246
N
C
N
247
N
O
N
248
S
P
N
249
N
O
N
250
N
O
N
251
N
N
N
252
R
P
N
253
N
O
N
254
N
O
N
255
N
O
N
256
N
P
N
257
N
O
N
258
N
O
N
259
N
O
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
N
N
277
S
C
N
278
N
C
N
279
N
O
N
280
N
C
N
281
N
C
N
282
N
C
N
283
N
O
N
284
N
N
N
285
N
O
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
N
N
297
S
C
N
298
N
C
N
299
N
O
N
300
N
C
N
301
N
C
N
302
N
C
N
303
N
O
N
304
N
O
N
305
N
O
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
N
N
316
N
C
N
317
N
C
N
318
N
O
N
319
N
O
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
N
N
326
S
C
N
327
N
C
N
328
N
O
N
329
N
C
Y
330
N
C
Y
331
N
N
Y
332
N
C
Y
333
N
C
Y
334
N
N
N
335
N
O
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
O
N
347
N
H
N
348
N
H
N
349
N
N
N
350
S
C
N
351
N
C
N
352
N
O
N
353
S
C
N
354
N
C
N
355
N
C
N
356
N
C
N
357
N
O
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
N
N
372
S
C
N
373
N
C
N
374
N
O
N
375
N
C
N
376
N
C
N
377
N
C
N
378
N
C
N
379
N
O
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
N
N
394
S
C
N
395
N
C
N
396
N
O
N
397
N
C
N
398
N
C
N
399
N
C
N
400
N
C
N
401
N
N
N
402
N
O
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
N
N
419
S
C
N
420
N
C
N
421
N
O
N
422
N
C
N
423
N
C
N
424
N
S
N
425
N
C
N
426
N
O
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
MG
N
439
N
NA
N
440
N
N
N
441
S
C
N
442
N
C
N
443
N
O
N
444
N
C
Y
445
N
C
Y
446
N
C
Y
447
N
C
Y
448
N
C
Y
449
N
C
Y
450
N
C
N
451
N
O
N
452
N
H
N
453
N
H
N
454
N
H
N
455
N
H
N
456
N
H
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
H
N
462
N
H
N
463
N
N
N
464
S
C
N
465
N
C
N
466
N
O
N
467
N
C
N
468
N
C
N
469
N
C
N
470
N
O
N
471
N
H
N
472
N
H
N
473
N
H
N
474
N
H
N
475
N
H
N
476
N
H
N
477
N
H
N
478
N
H
N
479
N
H
N
480
N
N
N
481
S
C
N
482
N
C
N
483
N
O
N
484
N
C
N
485
N
O
N
486
N
O
N
487
N
H
N
488
N
H
N
489
N
H
N
490
N
H
N
491
N
H
N
492
N
H
N
493
N
H
N
494
N
N
N
495
S
C
N
496
N
C
N
497
N
O
N
498
R
C
N
499
N
O
N
500
N
C
N
501
N
O
N
502
N
H
N
503
N
H
N
504
N
H
N
505
N
H
N
506
N
H
N
507
N
H
N
508
N
H
N
509
N
H
N
510
N
H
N
511
N
N
N
512
S
C
N
513
N
C
N
514
N
O
N
515
N
C
Y
516
N
C
Y
517
N
C
Y
518
N
C
Y
519
N
N
Y
520
N
C
Y
521
N
C
Y
522
N
C
Y
523
N
C
Y
524
N
C
N
525
N
O
N
526
N
H
N
527
N
H
N
528
N
H
N
529
N
H
N
530
N
H
N
531
N
H
N
532
N
H
N
533
N
H
N
534
N
H
N
535
N
H
N
536
N
H
N
537
N
H
N
538
N
N
N
539
S
C
N
540
N
C
N
541
N
O
N
542
N
C
Y
543
N
C
Y
544
N
C
Y
545
N
C
Y
546
N
C
Y
547
N
C
Y
548
N
C
N
549
N
O
N
550
N
O
N
551
N
H
N
552
N
H
N
553
N
H
N
554
N
H
N
555
N
H
N
556
N
H
N
557
N
H
N
558
N
H
N
559
N
H
N
560
N
H
N
561
N
H
N
562
N
N
N
563
S
C
N
564
N
C
N
565
N
O
N
566
N
C
N
567
N
C
N
568
N
C
N
569
N
O
N
570
N
H
N
571
N
H
N
572
N
H
N
573
N
H
N
574
N
H
N
575
N
H
N
576
N
H
N
577
N
H
N
578
N
H
N
579
N
H
N
580
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
doub
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
Y
106
N
sing
Y
107
N
sing
Y
108
N
doub
N
109
N
sing
Y
110
N
sing
Y
111
N
sing
Y
112
N
doub
N
113
N
sing
Y
114
N
doub
N
115
N
sing
N
116
N
sing
Y
117
N
sing
Y
118
N
doub
N
119
N
sing
Y
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
doub
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
doub
N
147
N
sing
N
148
N
doub
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
doub
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
Y
179
N
sing
Y
180
N
sing
Y
181
N
doub
N
182
N
sing
Y
183
N
sing
N
184
N
sing
Y
185
N
doub
N
186
N
doub
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
doub
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
doub
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
doub
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
doub
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
doub
Y
233
N
sing
Y
234
N
sing
Y
235
N
doub
N
236
N
sing
Y
237
N
sing
N
238
N
sing
Y
239
N
sing
N
240
N
sing
N
241
N
doub
Y
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
doub
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
doub
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
doub
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
doub
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
doub
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
doub
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
doub
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
doub
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
Y
334
N
sing
Y
335
N
doub
Y
336
N
doub
N
337
N
sing
Y
338
N
sing
N
339
N
sing
Y
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
doub
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
doub
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
doub
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
doub
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
doub
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
Y
442
N
doub
Y
443
N
sing
Y
444
N
sing
N
445
N
sing
Y
446
N
doub
N
447
N
sing
Y
448
N
doub
N
449
N
sing
Y
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
doub
N
461
N
sing
N
462
N
sing
N
463
N
sing
N
464
N
sing
N
465
N
sing
N
466
N
sing
N
467
N
sing
N
468
N
sing
N
469
N
sing
N
470
N
sing
N
471
N
sing
N
472
N
sing
N
473
N
sing
N
474
N
sing
N
475
N
sing
N
476
N
sing
N
477
N
doub
N
478
N
sing
N
479
N
sing
N
480
N
sing
N
481
N
sing
N
482
N
sing
N
483
N
sing
N
484
N
sing
N
485
N
sing
N
486
N
sing
N
487
N
sing
N
488
N
sing
N
489
N
sing
N
490
N
doub
N
491
N
sing
N
492
N
sing
N
493
N
sing
N
494
N
sing
N
495
N
sing
N
496
N
sing
N
497
N
sing
N
498
N
sing
N
499
N
sing
N
500
N
sing
N
501
N
sing
N
502
N
sing
N
503
N
sing
N
504
N
sing
N
505
N
sing
N
506
N
doub
N
507
N
sing
N
508
N
sing
N
509
N
sing
N
510
N
sing
Y
511
N
doub
Y
512
N
sing
Y
513
N
sing
N
514
N
sing
Y
515
N
doub
Y
516
N
sing
Y
517
N
sing
N
518
N
sing
Y
519
N
sing
Y
520
N
doub
N
521
N
sing
Y
522
N
doub
N
523
N
sing
Y
524
N
sing
N
525
N
sing
N
526
N
sing
N
527
N
sing
N
528
N
sing
N
529
N
sing
N
530
N
sing
N
531
N
sing
N
532
N
sing
N
533
N
sing
N
534
N
doub
N
535
N
sing
N
536
N
sing
N
537
N
sing
N
538
N
sing
Y
539
N
doub
Y
540
N
sing
Y
541
N
sing
N
542
N
sing
Y
543
N
doub
N
544
N
sing
Y
545
N
doub
N
546
N
sing
Y
547
N
sing
N
548
N
sing
N
549
N
sing
N
550
N
sing
N
551
N
sing
N
552
N
sing
N
553
N
sing
N
554
N
sing
N
555
N
sing
N
556
N
sing
N
557
N
sing
N
558
N
doub
N
559
N
sing
N
560
N
sing
N
561
N
sing
N
562
N
sing
N
563
N
sing
N
564
N
sing
N
565
N
sing
N
566
N
sing
N
567
N
sing
N
568
N
sing
N
569
N
sing
US
J.Am.Chem.Soc.
JACSAT
0004
0002-7863
135
8078
8088
10.1021/ja403842j
23647366
Amino Acid Substitution in the Active Site of DNA Polymerase beta Explains the Energy Barrier of the Nucleotidyl Transfer Reaction.
2013
10.2210/pdb4jwn/pdb
pdb_00004jwn
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
200
1
Viramax
CCD
2007-05-22
RIGAKU SATURN 92
Viramax
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU MICROMAX-007 HF
38197.664
DNA polymerase beta
2.7.7.7
D256A
1
man
polymer
4853.158
DNA (5'-D(*CP*CP*GP*AP*CP*AP*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3')
1
syn
polymer
3061.004
DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*C)-3')
1
syn
polymer
1536.035
DNA (5'-D(P*GP*TP*CP*GP*G)-3')
1
syn
polymer
467.157
2'-DEOXYURIDINE 5'-ALPHA,BETA-IMIDO-TRIPHOSPHATE
1
syn
non-polymer
24.305
MAGNESIUM ION
1
syn
non-polymer
22.990
SODIUM ION
2
syn
non-polymer
35.453
CHLORIDE ION
4
syn
non-polymer
18.015
water
201
nat
water
no
no
MSKRKAPQETLNGGITDMLTELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIAEKIDEFLATG
KLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNEDKLNHHQRIGLKYFGDFEKRIPREEMLQMQD
IVLNEVKKVDSEYIATVCGSFRRGAESSGDMDVLLTHPSFTSESTKQPKLLHQVVEQLQKVHFITDTLSKGETKFMGVCQ
LPSKNDEKEYPHRRIAIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPLGVTGVAGEPLPVDSEKDIF
DYIQWKYREPKDRSE
MSKRKAPQETLNGGITDMLTELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIAEKIDEFLATG
KLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNEDKLNHHQRIGLKYFGDFEKRIPREEMLQMQD
IVLNEVKKVDSEYIATVCGSFRRGAESSGDMDVLLTHPSFTSESTKQPKLLHQVVEQLQKVHFITDTLSKGETKFMGVCQ
LPSKNDEKEYPHRRIAIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPLGVTGVAGEPLPVDSEKDIF
DYIQWKYREPKDRSE
A
polypeptide(L)
no
no
(DC)(DC)(DG)(DA)(DC)(DA)(DG)(DC)(DG)(DC)(DA)(DT)(DC)(DA)(DG)(DC)
CCGACAGCGCATCAGC
T
polydeoxyribonucleotide
no
no
(DG)(DC)(DT)(DG)(DA)(DT)(DG)(DC)(DG)(DC)
GCTGATGCGC
P
polydeoxyribonucleotide
no
no
(DG)(DT)(DC)(DG)(DG)
GTCGG
D
polydeoxyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
sample
POLB
9606
Homo sapiens
562
Escherichia coli
PLASMID
pwl11
1
2.22
44.70
VAPOR DIFFUSION, SITTING DROP
7.5
50 mM Imidazole, 350 mM Sodium Acetate, 18 % PEG3350, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 291K
291
-13.833
1
19
T
1
D
5
-1.541
T_DC1:DG5_D
1
-13.276
0.597
0.265
-0.318
-4.115
1
19
T
2
D
4
-2.334
T_DC2:DG4_D
2
-8.605
0.462
0.224
-0.316
-0.557
1
19
T
3
D
3
3.907
T_DG3:DC3_D
3
-14.495
-0.474
0.054
-0.244
9.133
1
20
T
4
D
2
-4.995
T_DA4:DT2_D
4
-8.277
-0.183
0.257
-0.188
18.692
1
19
T
5
D
1
1.935
T_DC5:DG1_D
5
0.577
0.366
-0.508
0.006
2.756
1
19
T
7
P
10
-0.897
T_DG7:DC10_P
6
-4.351
0.061
0.211
0.022
10.624
1
19
T
8
P
9
0.490
T_DC8:DG9_P
7
-1.422
0.286
-0.509
-0.204
2.247
1
19
T
9
P
8
-0.884
T_DG9:DC8_P
8
-0.907
-0.110
-0.101
-0.177
2.949
1
19
T
10
P
7
-0.378
T_DC10:DG7_P
9
-6.059
0.188
0.188
-0.167
-3.408
1
20
T
11
P
6
2.666
T_DA11:DT6_P
10
-12.168
-0.171
-0.020
-0.042
6.220
1
20
T
12
P
5
8.443
T_DT12:DA5_P
11
-7.990
-0.131
-0.024
0.069
6.559
1
19
T
13
P
4
-0.395
T_DC13:DG4_P
12
-14.148
0.881
-0.516
-0.245
-3.262
1
20
T
14
P
3
-6.380
T_DA14:DT3_P
13
-6.436
0.453
0.152
-0.234
8.491
1
19
T
15
P
2
5.516
T_DG15:DC2_P
14
-10.112
-0.671
0.227
-0.195
2.822
1
19
T
16
P
1
-0.989
T_DC16:DG1_P
15
-7.379
0.651
0.611
-0.506
3.040
31.119
T
T
1
2
16.603
D
D
5
4
3.086
8.780
-0.163
0.366
TT_DC1DC2:DG4DG5_DD
1
2.808
-5.310
29.755
-0.927
0.818
3.421
35.280
T
T
2
3
1.837
D
D
4
3
3.378
1.113
0.231
1.527
TT_DC2DG3:DC3DG4_DD
2
-0.344
0.568
35.261
2.348
-0.434
2.932
35.595
T
T
3
4
-0.322
D
D
3
2
2.917
-0.196
-0.334
0.012
TT_DG3DA4:DT2DC3_DD
3
-2.310
3.781
35.522
0.046
0.245
3.242
29.663
T
T
4
5
5.210
D
D
2
1
3.160
2.649
1.111
-0.613
TT_DA4DC5:DG1DT2_DD
4
5.439
-10.696
29.053
-1.750
-1.036
3.175
29.941
T
T
7
8
9.500
P
P
10
9
3.201
4.849
0.767
-0.468
TT_DG7DC8:DG9DC10_PP
5
6.519
-12.771
28.842
-1.902
-0.146
3.601
39.890
T
T
8
9
11.300
P
P
9
8
3.574
7.651
-0.967
0.032
TT_DC8DG9:DC8DG9_PP
6
-4.433
6.548
38.937
-0.934
0.850
3.180
31.148
T
T
9
10
9.748
P
P
8
7
3.287
5.204
-0.492
-0.574
TT_DG9DC10:DG7DC8_PP
7
-2.798
5.240
30.596
-2.060
0.385
3.166
38.346
T
T
10
11
12.937
P
P
7
6
3.334
8.432
-0.109
-0.444
TT_DC10DA11:DT6DG7_PP
8
-1.225
1.880
37.422
-1.737
0.012
3.154
29.788
T
T
11
12
-6.857
P
P
6
5
3.116
-3.517
0.240
-0.551
TT_DA11DT12:DA5DT6_PP
9
-0.585
1.140
29.579
-0.365
-0.585
3.126
42.237
T
T
12
13
5.140
P
P
5
4
3.157
3.689
-0.008
0.092
TT_DT12DC13:DG4DA5_PP
10
5.721
-7.971
41.709
-0.239
0.579
3.363
36.621
T
T
13
14
18.357
P
P
4
3
3.502
11.336
-0.482
-0.025
TT_DC13DA14:DT3DG4_PP
11
-3.866
6.261
34.671
-1.723
0.193
2.930
24.184
T
T
14
15
10.004
P
P
3
2
3.061
4.168
0.710
-0.179
TT_DA14DG15:DC2DT3_PP
12
-1.699
4.079
23.768
-1.651
-2.193
3.216
41.002
T
T
15
16
7.416
P
P
2
1
3.364
5.172
0.198
-0.698
TT_DG15DC16:DG1DC2_PP
13
-4.487
6.434
40.451
-1.567
-0.778
software
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
pdbx_struct_conn_angle
struct_conn
struct_ref_seq_dif
struct_site
repository
Initial release
Data collection
Refinement description
Data collection
Database references
Derived calculations
Refinement description
1
0
2013-06-26
1
1
2019-07-17
1
2
2023-09-20
_software.classification
_software.name
_software.version
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_asym_id
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr2_auth_comp_id
_pdbx_struct_conn_angle.ptnr2_auth_seq_id
_pdbx_struct_conn_angle.ptnr2_label_asym_id
_pdbx_struct_conn_angle.ptnr2_label_atom_id
_pdbx_struct_conn_angle.ptnr2_label_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
RCSB
2013-03-27
REL
REL
DUP
2'-DEOXYURIDINE 5'-ALPHA,BETA-IMIDO-TRIPHOSPHATE
MG
MAGNESIUM ION
NA
SODIUM ION
CL
CHLORIDE ION
HOH
water
Chemically synthesized oligonucleotide
sample
Chemically synthesized oligonucleotide
sample
Chemically synthesized oligonucleotide
sample
2FMS
PDB entry 2FMS
PDB
experimental model
DUP
338
5
DUP
DUP
401
A
MG
339
6
MG
MG
402
A
NA
341
7
NA
NA
403
A
NA
342
7
NA
NA
404
A
CL
343
8
CL
CL
405
A
CL
344
8
CL
CL
406
A
CL
345
8
CL
CL
407
A
CL
346
8
CL
CL
408
A
HOH
1
9
HOH
HOH
501
A
HOH
2
9
HOH
HOH
502
A
HOH
3
9
HOH
HOH
503
A
HOH
4
9
HOH
HOH
504
A
HOH
5
9
HOH
HOH
505
A
HOH
6
9
HOH
HOH
506
A
HOH
7
9
HOH
HOH
507
A
HOH
9
9
HOH
HOH
508
A
HOH
10
9
HOH
HOH
509
A
HOH
11
9
HOH
HOH
510
A
HOH
14
9
HOH
HOH
511
A
HOH
15
9
HOH
HOH
512
A
HOH
16
9
HOH
HOH
513
A
HOH
17
9
HOH
HOH
514
A
HOH
18
9
HOH
HOH
515
A
HOH
19
9
HOH
HOH
516
A
HOH
22
9
HOH
HOH
517
A
HOH
23
9
HOH
HOH
518
A
HOH
24
9
HOH
HOH
519
A
HOH
25
9
HOH
HOH
520
A
HOH
26
9
HOH
HOH
521
A
HOH
27
9
HOH
HOH
522
A
HOH
28
9
HOH
HOH
523
A
HOH
29
9
HOH
HOH
524
A
HOH
30
9
HOH
HOH
525
A
HOH
31
9
HOH
HOH
526
A
HOH
32
9
HOH
HOH
527
A
HOH
33
9
HOH
HOH
528
A
HOH
34
9
HOH
HOH
529
A
HOH
36
9
HOH
HOH
530
A
HOH
38
9
HOH
HOH
531
A
HOH
39
9
HOH
HOH
532
A
HOH
40
9
HOH
HOH
533
A
HOH
41
9
HOH
HOH
534
A
HOH
42
9
HOH
HOH
535
A
HOH
43
9
HOH
HOH
536
A
HOH
44
9
HOH
HOH
537
A
HOH
45
9
HOH
HOH
538
A
HOH
48
9
HOH
HOH
539
A
HOH
51
9
HOH
HOH
540
A
HOH
52
9
HOH
HOH
541
A
HOH
53
9
HOH
HOH
542
A
HOH
54
9
HOH
HOH
543
A
HOH
55
9
HOH
HOH
544
A
HOH
56
9
HOH
HOH
545
A
HOH
57
9
HOH
HOH
546
A
HOH
58
9
HOH
HOH
547
A
HOH
59
9
HOH
HOH
548
A
HOH
60
9
HOH
HOH
549
A
HOH
61
9
HOH
HOH
550
A
HOH
63
9
HOH
HOH
551
A
HOH
64
9
HOH
HOH
552
A
HOH
65
9
HOH
HOH
553
A
HOH
66
9
HOH
HOH
554
A
HOH
67
9
HOH
HOH
555
A
HOH
69
9
HOH
HOH
556
A
HOH
70
9
HOH
HOH
557
A
HOH
71
9
HOH
HOH
558
A
HOH
73
9
HOH
HOH
559
A
HOH
74
9
HOH
HOH
560
A
HOH
75
9
HOH
HOH
561
A
HOH
76
9
HOH
HOH
562
A
HOH
77
9
HOH
HOH
563
A
HOH
78
9
HOH
HOH
564
A
HOH
79
9
HOH
HOH
565
A
HOH
80
9
HOH
HOH
566
A
HOH
81
9
HOH
HOH
567
A
HOH
82
9
HOH
HOH
568
A
HOH
83
9
HOH
HOH
569
A
HOH
84
9
HOH
HOH
570
A
HOH
85
9
HOH
HOH
571
A
HOH
87
9
HOH
HOH
572
A
HOH
88
9
HOH
HOH
573
A
HOH
90
9
HOH
HOH
574
A
HOH
91
9
HOH
HOH
575
A
HOH
92
9
HOH
HOH
576
A
HOH
93
9
HOH
HOH
577
A
HOH
95
9
HOH
HOH
578
A
HOH
96
9
HOH
HOH
579
A
HOH
97
9
HOH
HOH
580
A
HOH
98
9
HOH
HOH
581
A
HOH
99
9
HOH
HOH
582
A
HOH
101
9
HOH
HOH
583
A
HOH
102
9
HOH
HOH
584
A
HOH
103
9
HOH
HOH
585
A
HOH
104
9
HOH
HOH
586
A
HOH
105
9
HOH
HOH
587
A
HOH
107
9
HOH
HOH
588
A
HOH
108
9
HOH
HOH
589
A
HOH
111
9
HOH
HOH
590
A
HOH
112
9
HOH
HOH
591
A
HOH
114
9
HOH
HOH
592
A
HOH
116
9
HOH
HOH
593
A
HOH
117
9
HOH
HOH
594
A
HOH
118
9
HOH
HOH
595
A
HOH
120
9
HOH
HOH
596
A
HOH
121
9
HOH
HOH
597
A
HOH
122
9
HOH
HOH
598
A
HOH
123
9
HOH
HOH
599
A
HOH
124
9
HOH
HOH
600
A
HOH
125
9
HOH
HOH
601
A
HOH
126
9
HOH
HOH
602
A
HOH
127
9
HOH
HOH
603
A
HOH
128
9
HOH
HOH
604
A
HOH
129
9
HOH
HOH
605
A
HOH
130
9
HOH
HOH
606
A
HOH
131
9
HOH
HOH
607
A
HOH
132
9
HOH
HOH
608
A
HOH
133
9
HOH
HOH
609
A
HOH
134
9
HOH
HOH
610
A
HOH
135
9
HOH
HOH
611
A
HOH
136
9
HOH
HOH
612
A
HOH
137
9
HOH
HOH
613
A
HOH
138
9
HOH
HOH
614
A
HOH
139
9
HOH
HOH
615
A
HOH
140
9
HOH
HOH
616
A
HOH
141
9
HOH
HOH
617
A
HOH
142
9
HOH
HOH
618
A
HOH
143
9
HOH
HOH
619
A
HOH
144
9
HOH
HOH
620
A
HOH
145
9
HOH
HOH
621
A
HOH
148
9
HOH
HOH
622
A
HOH
149
9
HOH
HOH
623
A
HOH
150
9
HOH
HOH
624
A
HOH
151
9
HOH
HOH
625
A
HOH
152
9
HOH
HOH
626
A
HOH
153
9
HOH
HOH
627
A
HOH
154
9
HOH
HOH
628
A
HOH
155
9
HOH
HOH
629
A
HOH
156
9
HOH
HOH
630
A
HOH
157
9
HOH
HOH
631
A
HOH
158
9
HOH
HOH
632
A
HOH
159
9
HOH
HOH
633
A
HOH
160
9
HOH
HOH
634
A
HOH
161
9
HOH
HOH
635
A
HOH
162
9
HOH
HOH
636
A
HOH
163
9
HOH
HOH
637
A
HOH
164
9
HOH
HOH
638
A
HOH
165
9
HOH
HOH
639
A
HOH
166
9
HOH
HOH
640
A
HOH
167
9
HOH
HOH
641
A
HOH
168
9
HOH
HOH
642
A
HOH
170
9
HOH
HOH
643
A
HOH
173
9
HOH
HOH
644
A
HOH
174
9
HOH
HOH
645
A
HOH
175
9
HOH
HOH
646
A
HOH
176
9
HOH
HOH
647
A
HOH
177
9
HOH
HOH
648
A
HOH
179
9
HOH
HOH
649
A
HOH
181
9
HOH
HOH
650
A
HOH
183
9
HOH
HOH
651
A
HOH
185
9
HOH
HOH
652
A
HOH
186
9
HOH
HOH
653
A
HOH
187
9
HOH
HOH
654
A
HOH
188
9
HOH
HOH
655
A
HOH
189
9
HOH
HOH
656
A
HOH
190
9
HOH
HOH
657
A
HOH
191
9
HOH
HOH
658
A
HOH
192
9
HOH
HOH
659
A
HOH
193
9
HOH
HOH
660
A
HOH
194
9
HOH
HOH
661
A
HOH
195
9
HOH
HOH
662
A
HOH
196
9
HOH
HOH
663
A
HOH
197
9
HOH
HOH
664
A
HOH
198
9
HOH
HOH
665
A
HOH
200
9
HOH
HOH
666
A
HOH
201
9
HOH
HOH
667
A
HOH
12
9
HOH
HOH
668
A
HOH
13
9
HOH
HOH
101
T
HOH
21
9
HOH
HOH
102
T
HOH
35
9
HOH
HOH
103
T
HOH
37
9
HOH
HOH
104
T
HOH
47
9
HOH
HOH
105
T
HOH
50
9
HOH
HOH
106
T
HOH
72
9
HOH
HOH
107
T
HOH
89
9
HOH
HOH
108
T
HOH
94
9
HOH
HOH
109
T
HOH
106
9
HOH
HOH
110
T
HOH
109
9
HOH
HOH
111
T
HOH
115
9
HOH
HOH
112
T
HOH
119
9
HOH
HOH
113
T
HOH
146
9
HOH
HOH
114
T
HOH
147
9
HOH
HOH
115
T
HOH
169
9
HOH
HOH
116
T
HOH
171
9
HOH
HOH
117
T
HOH
178
9
HOH
HOH
118
T
HOH
180
9
HOH
HOH
119
T
HOH
182
9
HOH
HOH
120
T
HOH
8
9
HOH
HOH
101
P
HOH
20
9
HOH
HOH
102
P
HOH
46
9
HOH
HOH
103
P
HOH
49
9
HOH
HOH
104
P
HOH
62
9
HOH
HOH
105
P
HOH
68
9
HOH
HOH
106
P
HOH
86
9
HOH
HOH
107
P
HOH
110
9
HOH
HOH
108
P
HOH
113
9
HOH
HOH
109
P
HOH
184
9
HOH
HOH
110
P
HOH
100
9
HOH
HOH
101
D
HOH
172
9
HOH
HOH
102
D
HOH
199
9
HOH
HOH
103
D
n
1
1
A
n
2
2
A
n
3
3
A
n
4
4
A
n
5
5
A
n
6
6
A
n
7
7
A
n
8
8
A
n
9
9
A
THR
10
n
10
THR
10
A
LEU
11
n
11
LEU
11
A
ASN
12
n
12
ASN
12
A
GLY
13
n
13
GLY
13
A
GLY
14
n
14
GLY
14
A
ILE
15
n
15
ILE
15
A
THR
16
n
16
THR
16
A
ASP
17
n
17
ASP
17
A
MET
18
n
18
MET
18
A
LEU
19
n
19
LEU
19
A
THR
20
n
20
THR
20
A
GLU
21
n
21
GLU
21
A
LEU
22
n
22
LEU
22
A
ALA
23
n
23
ALA
23
A
ASN
24
n
24
ASN
24
A
PHE
25
n
25
PHE
25
A
GLU
26
n
26
GLU
26
A
LYS
27
n
27
LYS
27
A
ASN
28
n
28
ASN
28
A
VAL
29
n
29
VAL
29
A
SER
30
n
30
SER
30
A
GLN
31
n
31
GLN
31
A
ALA
32
n
32
ALA
32
A
ILE
33
n
33
ILE
33
A
HIS
34
n
34
HIS
34
A
LYS
35
n
35
LYS
35
A
TYR
36
n
36
TYR
36
A
ASN
37
n
37
ASN
37
A
ALA
38
n
38
ALA
38
A
TYR
39
n
39
TYR
39
A
ARG
40
n
40
ARG
40
A
LYS
41
n
41
LYS
41
A
ALA
42
n
42
ALA
42
A
ALA
43
n
43
ALA
43
A
SER
44
n
44
SER
44
A
VAL
45
n
45
VAL
45
A
ILE
46
n
46
ILE
46
A
ALA
47
n
47
ALA
47
A
LYS
48
n
48
LYS
48
A
TYR
49
n
49
TYR
49
A
PRO
50
n
50
PRO
50
A
HIS
51
n
51
HIS
51
A
LYS
52
n
52
LYS
52
A
ILE
53
n
53
ILE
53
A
LYS
54
n
54
LYS
54
A
SER
55
n
55
SER
55
A
GLY
56
n
56
GLY
56
A
ALA
57
n
57
ALA
57
A
GLU
58
n
58
GLU
58
A
ALA
59
n
59
ALA
59
A
LYS
60
n
60
LYS
60
A
LYS
61
n
61
LYS
61
A
LEU
62
n
62
LEU
62
A
PRO
63
n
63
PRO
63
A
GLY
64
n
64
GLY
64
A
VAL
65
n
65
VAL
65
A
GLY
66
n
66
GLY
66
A
THR
67
n
67
THR
67
A
LYS
68
n
68
LYS
68
A
ILE
69
n
69
ILE
69
A
ALA
70
n
70
ALA
70
A
GLU
71
n
71
GLU
71
A
LYS
72
n
72
LYS
72
A
ILE
73
n
73
ILE
73
A
ASP
74
n
74
ASP
74
A
GLU
75
n
75
GLU
75
A
PHE
76
n
76
PHE
76
A
LEU
77
n
77
LEU
77
A
ALA
78
n
78
ALA
78
A
THR
79
n
79
THR
79
A
GLY
80
n
80
GLY
80
A
LYS
81
n
81
LYS
81
A
LEU
82
n
82
LEU
82
A
ARG
83
n
83
ARG
83
A
LYS
84
n
84
LYS
84
A
LEU
85
n
85
LEU
85
A
GLU
86
n
86
GLU
86
A
LYS
87
n
87
LYS
87
A
ILE
88
n
88
ILE
88
A
ARG
89
n
89
ARG
89
A
GLN
90
n
90
GLN
90
A
ASP
91
n
91
ASP
91
A
ASP
92
n
92
ASP
92
A
THR
93
n
93
THR
93
A
SER
94
n
94
SER
94
A
SER
95
n
95
SER
95
A
SER
96
n
96
SER
96
A
ILE
97
n
97
ILE
97
A
ASN
98
n
98
ASN
98
A
PHE
99
n
99
PHE
99
A
LEU
100
n
100
LEU
100
A
THR
101
n
101
THR
101
A
ARG
102
n
102
ARG
102
A
VAL
103
n
103
VAL
103
A
SER
104
n
104
SER
104
A
GLY
105
n
105
GLY
105
A
ILE
106
n
106
ILE
106
A
GLY
107
n
107
GLY
107
A
PRO
108
n
108
PRO
108
A
SER
109
n
109
SER
109
A
ALA
110
n
110
ALA
110
A
ALA
111
n
111
ALA
111
A
ARG
112
n
112
ARG
112
A
LYS
113
n
113
LYS
113
A
PHE
114
n
114
PHE
114
A
VAL
115
n
115
VAL
115
A
ASP
116
n
116
ASP
116
A
GLU
117
n
117
GLU
117
A
GLY
118
n
118
GLY
118
A
ILE
119
n
119
ILE
119
A
LYS
120
n
120
LYS
120
A
THR
121
n
121
THR
121
A
LEU
122
n
122
LEU
122
A
GLU
123
n
123
GLU
123
A
ASP
124
n
124
ASP
124
A
LEU
125
n
125
LEU
125
A
ARG
126
n
126
ARG
126
A
LYS
127
n
127
LYS
127
A
ASN
128
n
128
ASN
128
A
GLU
129
n
129
GLU
129
A
ASP
130
n
130
ASP
130
A
LYS
131
n
131
LYS
131
A
LEU
132
n
132
LEU
132
A
ASN
133
n
133
ASN
133
A
HIS
134
n
134
HIS
134
A
HIS
135
n
135
HIS
135
A
GLN
136
n
136
GLN
136
A
ARG
137
n
137
ARG
137
A
ILE
138
n
138
ILE
138
A
GLY
139
n
139
GLY
139
A
LEU
140
n
140
LEU
140
A
LYS
141
n
141
LYS
141
A
TYR
142
n
142
TYR
142
A
PHE
143
n
143
PHE
143
A
GLY
144
n
144
GLY
144
A
ASP
145
n
145
ASP
145
A
PHE
146
n
146
PHE
146
A
GLU
147
n
147
GLU
147
A
LYS
148
n
148
LYS
148
A
ARG
149
n
149
ARG
149
A
ILE
150
n
150
ILE
150
A
PRO
151
n
151
PRO
151
A
ARG
152
n
152
ARG
152
A
GLU
153
n
153
GLU
153
A
GLU
154
n
154
GLU
154
A
MET
155
n
155
MET
155
A
LEU
156
n
156
LEU
156
A
GLN
157
n
157
GLN
157
A
MET
158
n
158
MET
158
A
GLN
159
n
159
GLN
159
A
ASP
160
n
160
ASP
160
A
ILE
161
n
161
ILE
161
A
VAL
162
n
162
VAL
162
A
LEU
163
n
163
LEU
163
A
ASN
164
n
164
ASN
164
A
GLU
165
n
165
GLU
165
A
VAL
166
n
166
VAL
166
A
LYS
167
n
167
LYS
167
A
LYS
168
n
168
LYS
168
A
VAL
169
n
169
VAL
169
A
ASP
170
n
170
ASP
170
A
SER
171
n
171
SER
171
A
GLU
172
n
172
GLU
172
A
TYR
173
n
173
TYR
173
A
ILE
174
n
174
ILE
174
A
ALA
175
n
175
ALA
175
A
THR
176
n
176
THR
176
A
VAL
177
n
177
VAL
177
A
CYS
178
n
178
CYS
178
A
GLY
179
n
179
GLY
179
A
SER
180
n
180
SER
180
A
PHE
181
n
181
PHE
181
A
ARG
182
n
182
ARG
182
A
ARG
183
n
183
ARG
183
A
GLY
184
n
184
GLY
184
A
ALA
185
n
185
ALA
185
A
GLU
186
n
186
GLU
186
A
SER
187
n
187
SER
187
A
SER
188
n
188
SER
188
A
GLY
189
n
189
GLY
189
A
ASP
190
n
190
ASP
190
A
MET
191
n
191
MET
191
A
ASP
192
n
192
ASP
192
A
VAL
193
n
193
VAL
193
A
LEU
194
n
194
LEU
194
A
LEU
195
n
195
LEU
195
A
THR
196
n
196
THR
196
A
HIS
197
n
197
HIS
197
A
PRO
198
n
198
PRO
198
A
SER
199
n
199
SER
199
A
PHE
200
n
200
PHE
200
A
THR
201
n
201
THR
201
A
SER
202
n
202
SER
202
A
GLU
203
n
203
GLU
203
A
SER
204
n
204
SER
204
A
THR
205
n
205
THR
205
A
LYS
206
n
206
LYS
206
A
GLN
207
n
207
GLN
207
A
PRO
208
n
208
PRO
208
A
LYS
209
n
209
LYS
209
A
LEU
210
n
210
LEU
210
A
LEU
211
n
211
LEU
211
A
HIS
212
n
212
HIS
212
A
GLN
213
n
213
GLN
213
A
VAL
214
n
214
VAL
214
A
VAL
215
n
215
VAL
215
A
GLU
216
n
216
GLU
216
A
GLN
217
n
217
GLN
217
A
LEU
218
n
218
LEU
218
A
GLN
219
n
219
GLN
219
A
LYS
220
n
220
LYS
220
A
VAL
221
n
221
VAL
221
A
HIS
222
n
222
HIS
222
A
PHE
223
n
223
PHE
223
A
ILE
224
n
224
ILE
224
A
THR
225
n
225
THR
225
A
ASP
226
n
226
ASP
226
A
THR
227
n
227
THR
227
A
LEU
228
n
228
LEU
228
A
SER
229
n
229
SER
229
A
LYS
230
n
230
LYS
230
A
GLY
231
n
231
GLY
231
A
GLU
232
n
232
GLU
232
A
THR
233
n
233
THR
233
A
LYS
234
n
234
LYS
234
A
PHE
235
n
235
PHE
235
A
MET
236
n
236
MET
236
A
GLY
237
n
237
GLY
237
A
VAL
238
n
238
VAL
238
A
CYS
239
n
239
CYS
239
A
GLN
240
n
240
GLN
240
A
LEU
241
n
241
LEU
241
A
PRO
242
n
242
PRO
242
A
SER
243
n
243
SER
243
A
LYS
244
n
244
LYS
244
A
ASN
245
n
245
ASN
245
A
ASP
246
n
246
ASP
246
A
GLU
247
n
247
GLU
247
A
LYS
248
n
248
LYS
248
A
GLU
249
n
249
GLU
249
A
TYR
250
n
250
TYR
250
A
PRO
251
n
251
PRO
251
A
HIS
252
n
252
HIS
252
A
ARG
253
n
253
ARG
253
A
ARG
254
n
254
ARG
254
A
ILE
255
n
255
ILE
255
A
ALA
256
n
256
ALA
256
A
ILE
257
n
257
ILE
257
A
ARG
258
n
258
ARG
258
A
LEU
259
n
259
LEU
259
A
ILE
260
n
260
ILE
260
A
PRO
261
n
261
PRO
261
A
LYS
262
n
262
LYS
262
A
ASP
263
n
263
ASP
263
A
GLN
264
n
264
GLN
264
A
TYR
265
n
265
TYR
265
A
TYR
266
n
266
TYR
266
A
CYS
267
n
267
CYS
267
A
GLY
268
n
268
GLY
268
A
VAL
269
n
269
VAL
269
A
LEU
270
n
270
LEU
270
A
TYR
271
n
271
TYR
271
A
PHE
272
n
272
PHE
272
A
THR
273
n
273
THR
273
A
GLY
274
n
274
GLY
274
A
SER
275
n
275
SER
275
A
ASP
276
n
276
ASP
276
A
ILE
277
n
277
ILE
277
A
PHE
278
n
278
PHE
278
A
ASN
279
n
279
ASN
279
A
LYS
280
n
280
LYS
280
A
ASN
281
n
281
ASN
281
A
MET
282
n
282
MET
282
A
ARG
283
n
283
ARG
283
A
ALA
284
n
284
ALA
284
A
HIS
285
n
285
HIS
285
A
ALA
286
n
286
ALA
286
A
LEU
287
n
287
LEU
287
A
GLU
288
n
288
GLU
288
A
LYS
289
n
289
LYS
289
A
GLY
290
n
290
GLY
290
A
PHE
291
n
291
PHE
291
A
THR
292
n
292
THR
292
A
ILE
293
n
293
ILE
293
A
ASN
294
n
294
ASN
294
A
GLU
295
n
295
GLU
295
A
TYR
296
n
296
TYR
296
A
THR
297
n
297
THR
297
A
ILE
298
n
298
ILE
298
A
ARG
299
n
299
ARG
299
A
PRO
300
n
300
PRO
300
A
LEU
301
n
301
LEU
301
A
GLY
302
n
302
GLY
302
A
VAL
303
n
303
VAL
303
A
THR
304
n
304
THR
304
A
GLY
305
n
305
GLY
305
A
VAL
306
n
306
VAL
306
A
ALA
307
n
307
ALA
307
A
GLY
308
n
308
GLY
308
A
GLU
309
n
309
GLU
309
A
PRO
310
n
310
PRO
310
A
LEU
311
n
311
LEU
311
A
PRO
312
n
312
PRO
312
A
VAL
313
n
313
VAL
313
A
ASP
314
n
314
ASP
314
A
SER
315
n
315
SER
315
A
GLU
316
n
316
GLU
316
A
LYS
317
n
317
LYS
317
A
ASP
318
n
318
ASP
318
A
ILE
319
n
319
ILE
319
A
PHE
320
n
320
PHE
320
A
ASP
321
n
321
ASP
321
A
TYR
322
n
322
TYR
322
A
ILE
323
n
323
ILE
323
A
GLN
324
n
324
GLN
324
A
TRP
325
n
325
TRP
325
A
LYS
326
n
326
LYS
326
A
TYR
327
n
327
TYR
327
A
ARG
328
n
328
ARG
328
A
GLU
329
n
329
GLU
329
A
PRO
330
n
330
PRO
330
A
LYS
331
n
331
LYS
331
A
ASP
332
n
332
ASP
332
A
ARG
333
n
333
ARG
333
A
SER
334
n
334
SER
334
A
GLU
335
n
335
GLU
335
A
DC
1
n
1
DC
1
T
DC
2
n
2
DC
2
T
DG
3
n
3
DG
3
T
DA
4
n
4
DA
4
T
DC
5
n
5
DC
5
T
DA
6
n
6
DA
6
T
DG
7
n
7
DG
7
T
DC
8
n
8
DC
8
T
DG
9
n
9
DG
9
T
DC
10
n
10
DC
10
T
DA
11
n
11
DA
11
T
DT
12
n
12
DT
12
T
DC
13
n
13
DC
13
T
DA
14
n
14
DA
14
T
DG
15
n
15
DG
15
T
DC
16
n
16
DC
16
T
DG
1
n
1
DG
1
P
DC
2
n
2
DC
2
P
DT
3
n
3
DT
3
P
DG
4
n
4
DG
4
P
DA
5
n
5
DA
5
P
DT
6
n
6
DT
6
P
DG
7
n
7
DG
7
P
DC
8
n
8
DC
8
P
DG
9
n
9
DG
9
P
DC
10
n
10
DC
10
P
DG
1
n
1
DG
1
D
DT
2
n
2
DT
2
D
DC
3
n
3
DC
3
D
DG
4
n
4
DG
4
D
DG
5
n
5
DG
5
D
author_and_software_defined_assembly
PISA
4
tetrameric
6300
-106
19630
A
LYS
60
A
O
LYS
60
1_555
A
NA
404
H
NA
NA
1_555
A
LEU
62
A
O
LEU
62
1_555
78.1
A
LYS
60
A
O
LYS
60
1_555
A
NA
404
H
NA
NA
1_555
A
VAL
65
A
O
VAL
65
1_555
77.8
A
LEU
62
A
O
LEU
62
1_555
A
NA
404
H
NA
NA
1_555
A
VAL
65
A
O
VAL
65
1_555
83.2
A
LYS
60
A
O
LYS
60
1_555
A
NA
404
H
NA
NA
1_555
D
DC
3
D
OP1
DC
3
1_555
147.3
A
LEU
62
A
O
LEU
62
1_555
A
NA
404
H
NA
NA
1_555
D
DC
3
D
OP1
DC
3
1_555
90.5
A
VAL
65
A
O
VAL
65
1_555
A
NA
404
H
NA
NA
1_555
D
DC
3
D
OP1
DC
3
1_555
70.5
A
LYS
60
A
O
LYS
60
1_555
A
NA
404
H
NA
NA
1_555
D
HOH
103
P
O
HOH
1_555
101.5
A
LEU
62
A
O
LEU
62
1_555
A
NA
404
H
NA
NA
1_555
D
HOH
103
P
O
HOH
1_555
172.1
A
VAL
65
A
O
VAL
65
1_555
A
NA
404
H
NA
NA
1_555
D
HOH
103
P
O
HOH
1_555
89.0
D
DC
3
D
OP1
DC
3
1_555
A
NA
404
H
NA
NA
1_555
D
HOH
103
P
O
HOH
1_555
85.7
A
THR
101
A
O
THR
101
1_555
A
NA
403
G
NA
NA
1_555
A
VAL
103
A
O
VAL
103
1_555
112.7
A
THR
101
A
O
THR
101
1_555
A
NA
403
G
NA
NA
1_555
A
ILE
106
A
O
ILE
106
1_555
91.0
A
VAL
103
A
O
VAL
103
1_555
A
NA
403
G
NA
NA
1_555
A
ILE
106
A
O
ILE
106
1_555
80.6
A
THR
101
A
O
THR
101
1_555
A
NA
403
G
NA
NA
1_555
P
DG
9
C
OP1
DG
9
1_555
151.1
A
VAL
103
A
O
VAL
103
1_555
A
NA
403
G
NA
NA
1_555
P
DG
9
C
OP1
DG
9
1_555
96.2
A
ILE
106
A
O
ILE
106
1_555
A
NA
403
G
NA
NA
1_555
P
DG
9
C
OP1
DG
9
1_555
94.1
A
THR
101
A
O
THR
101
1_555
A
NA
403
G
NA
NA
1_555
P
HOH
104
O
O
HOH
1_555
68.1
A
VAL
103
A
O
VAL
103
1_555
A
NA
403
G
NA
NA
1_555
P
HOH
104
O
O
HOH
1_555
168.8
A
ILE
106
A
O
ILE
106
1_555
A
NA
403
G
NA
NA
1_555
P
HOH
104
O
O
HOH
1_555
88.3
P
DG
9
C
OP1
DG
9
1_555
A
NA
403
G
NA
NA
1_555
P
HOH
104
O
O
HOH
1_555
83.6
A
THR
101
A
O
THR
101
1_555
A
NA
403
G
NA
NA
1_555
P
HOH
106
O
O
HOH
1_555
95.9
A
VAL
103
A
O
VAL
103
1_555
A
NA
403
G
NA
NA
1_555
P
HOH
106
O
O
HOH
1_555
98.9
A
ILE
106
A
O
ILE
106
1_555
A
NA
403
G
NA
NA
1_555
P
HOH
106
O
O
HOH
1_555
172.8
P
DG
9
C
OP1
DG
9
1_555
A
NA
403
G
NA
NA
1_555
P
HOH
106
O
O
HOH
1_555
78.7
P
HOH
104
O
O
HOH
1_555
A
NA
403
G
NA
NA
1_555
P
HOH
106
O
O
HOH
1_555
92.0
A
ASP
190
A
OD1
ASP
190
1_555
A
MG
402
F
MG
MG
1_555
A
ASP
192
A
OD2
ASP
192
1_555
102.6
A
ASP
190
A
OD1
ASP
190
1_555
A
MG
402
F
MG
MG
1_555
A
DUP
401
E
O3G
DUP
1_555
84.0
A
ASP
192
A
OD2
ASP
192
1_555
A
MG
402
F
MG
MG
1_555
A
DUP
401
E
O3G
DUP
1_555
160.2
A
ASP
190
A
OD1
ASP
190
1_555
A
MG
402
F
MG
MG
1_555
A
DUP
401
E
O1A
DUP
1_555
84.2
A
ASP
192
A
OD2
ASP
192
1_555
A
MG
402
F
MG
MG
1_555
A
DUP
401
E
O1A
DUP
1_555
74.3
A
DUP
401
E
O3G
DUP
1_555
A
MG
402
F
MG
MG
1_555
A
DUP
401
E
O1A
DUP
1_555
88.1
A
ASP
190
A
OD1
ASP
190
1_555
A
MG
402
F
MG
MG
1_555
A
DUP
401
E
O2B
DUP
1_555
153.5
A
ASP
192
A
OD2
ASP
192
1_555
A
MG
402
F
MG
MG
1_555
A
DUP
401
E
O2B
DUP
1_555
83.8
A
DUP
401
E
O3G
DUP
1_555
A
MG
402
F
MG
MG
1_555
A
DUP
401
E
O2B
DUP
1_555
82.4
A
DUP
401
E
O1A
DUP
1_555
A
MG
402
F
MG
MG
1_555
A
DUP
401
E
O2B
DUP
1_555
72.8
A
ASP
190
A
OD1
ASP
190
1_555
A
MG
402
F
MG
MG
1_555
A
HOH
510
M
O
HOH
1_555
108.0
A
ASP
192
A
OD2
ASP
192
1_555
A
MG
402
F
MG
MG
1_555
A
HOH
510
M
O
HOH
1_555
99.9
A
DUP
401
E
O3G
DUP
1_555
A
MG
402
F
MG
MG
1_555
A
HOH
510
M
O
HOH
1_555
95.7
A
DUP
401
E
O1A
DUP
1_555
A
MG
402
F
MG
MG
1_555
A
HOH
510
M
O
HOH
1_555
167.5
A
DUP
401
E
O2B
DUP
1_555
A
MG
402
F
MG
MG
1_555
A
HOH
510
M
O
HOH
1_555
95.9
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
ILE
150
A
N
ILE
150
A
O
SER
188
A
O
SER
188
A
N
THR
176
A
N
THR
176
A
O
LEU
194
A
O
LEU
194
A
N
LEU
195
A
N
LEU
195
A
O
ARG
258
A
O
ARG
258
A
O
ILE
255
A
O
ILE
255
A
N
GLY
237
A
N
GLY
237
A
O
MET
236
A
O
MET
236
A
N
SER
229
A
N
SER
229
A
N
THR
201
A
N
THR
201
A
O
SER
204
A
O
SER
204
A
N
THR
292
A
N
THR
292
A
O
ARG
299
A
O
ARG
299
1
A
CG1
VAL
303
A
CG1
VAL
303
1
Y
1
A
CG2
VAL
303
A
CG2
VAL
303
1
Y
1
A
MET
1
A
MET
1
1
Y
1
A
SER
2
A
SER
2
1
Y
1
A
LYS
3
A
LYS
3
1
Y
1
A
ARG
4
A
ARG
4
1
Y
1
A
LYS
5
A
LYS
5
1
Y
1
A
ALA
6
A
ALA
6
1
Y
1
A
PRO
7
A
PRO
7
1
Y
1
A
GLN
8
A
GLN
8
1
Y
1
A
GLU
9
A
GLU
9
1
Y
1
P
P
O
O
HOH
HOH
105
108
2.08
1
A
A
O
O
HOH
HOH
534
550
2.16
1
A
A
O
O
HOH
HOH
610
637
2.17
1
A
A
O
O
HOH
HOH
510
646
2.17
1
T
T
OP2
O
DC
HOH
5
113
2.19
1
-4.90
0.80
102.40
97.50
T
T
T
C3'
C2'
C1'
DC
DC
DC
2
2
2
N
1
1.91
0.30
108.30
110.21
T
T
T
O4'
C1'
N1
DC
DC
DC
2
2
2
N
1
3.45
0.30
108.30
111.75
T
T
T
O4'
C1'
N1
DC
DC
DC
5
5
5
N
1
1.89
0.30
108.30
110.19
T
T
T
O4'
C1'
N9
DG
DG
DG
7
7
7
N
1
3.50
0.30
108.30
111.80
P
P
P
O4'
C1'
N9
DG
DG
DG
4
4
4
N
1
2.01
0.30
108.30
110.31
P
P
P
O4'
C1'
N9
DA
DA
DA
5
5
5
N
1
D
D
P
OP3
DG
DG
1
1
-0.128
0.012
1.607
1.479
N
1
A
ALA
32
-112.57
79.25
1
A
ASP
170
-176.73
120.24
1
A
CYS
178
-115.72
-142.59
1
A
SER
204
177.69
150.96
1
A
ASP
246
66.73
-7.85
6.7093
0.0000
3.8214
-3.4967
-0.0000
-3.2126
0.2508
0.1765
0.1838
2.390
29.003
1512
16387
15133
9.92
91.71
0.41
Random
1
Restarained
THROUGHOUT
0.00
MOLECULAR REPLACEMENT
24.80
0.83
1.10
PDB entry 2FMS
ML
FLAT BULK SOLVENT MODEL
42.898
0.358
2.390
29.003
201
3476
35
631
2609
0.008
3409
1.532
4725
20.236
1363
0.064
512
0.005
499
0.3387
0.2617
2.4674
105
936
70.00
0.3038
0.2436
2.5555
150
1154
87.00
0.3382
0.2336
2.6578
126
1207
89.00
0.2842
0.2120
2.7786
127
1190
88.00
0.3067
0.2025
2.9250
112
1246
90.00
0.2660
0.1920
3.1081
132
1260
93.00
0.2588
0.1785
3.3477
135
1344
98.00
0.2449
0.1793
3.6840
171
1329
99.00
0.2205
0.1399
4.2157
155
1319
98.00
0.2244
0.1383
5.3060
151
1343
98.00
0.2145
0.1666
29.0049
148
1395
100.00
2.39
50
4JWN
15235
0
2
1
3.3
99
0.44
2.39
2.49
2.07
1509
1
2.7
91.3
refinement
PHENIX
(phenix.refine: 1.7_650)
refinement
CNS
data collection
HKL-2000
data reduction
HKL-2000
data scaling
HKL-2000
phasing
CNS
Ternary complex of D256A mutant of DNA Polymerase Beta
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
6
N
N
7
N
N
7
N
N
8
N
N
8
N
N
8
N
N
8
N
N
9
N
N
9
N
N
9
N
N
9
N
N
A
ASN
12
A
ASN
12
HELX_P
A
VAL
29
A
VAL
29
1
1
18
A
ALA
32
A
ALA
32
HELX_P
A
LYS
48
A
LYS
48
1
2
17
A
SER
55
A
SER
55
HELX_P
A
LYS
61
A
LYS
61
1
3
7
A
GLY
66
A
GLY
66
HELX_P
A
GLY
80
A
GLY
80
1
4
15
A
LEU
82
A
LEU
82
HELX_P
A
ASP
91
A
ASP
91
1
5
10
A
ASP
91
A
ASP
91
HELX_P
A
THR
101
A
THR
101
1
6
11
A
GLY
107
A
GLY
107
HELX_P
A
GLY
118
A
GLY
118
1
7
12
A
THR
121
A
THR
121
HELX_P
A
LYS
127
A
LYS
127
1
8
7
A
ASN
128
A
ASN
128
HELX_P
A
LEU
132
A
LEU
132
5
9
5
A
ASN
133
A
ASN
133
HELX_P
A
TYR
142
A
TYR
142
1
10
10
A
TYR
142
A
TYR
142
HELX_P
A
GLU
147
A
GLU
147
1
11
6
A
ARG
152
A
ARG
152
HELX_P
A
ASP
170
A
ASP
170
1
12
19
A
CYS
178
A
CYS
178
HELX_P
A
ARG
183
A
ARG
183
1
13
6
A
LYS
209
A
LYS
209
HELX_P
A
VAL
221
A
VAL
221
1
14
13
A
PRO
261
A
PRO
261
HELX_P
A
ASP
263
A
ASP
263
5
15
3
A
GLN
264
A
GLN
264
HELX_P
A
GLY
274
A
GLY
274
1
16
11
A
SER
275
A
SER
275
HELX_P
A
GLY
290
A
GLY
290
1
17
16
A
SER
315
A
SER
315
HELX_P
A
ILE
323
A
ILE
323
1
18
9
A
GLU
329
A
GLU
329
HELX_P
A
SER
334
A
SER
334
5
19
6
metalc
2.313
A
LYS
60
A
O
LYS
60
1_555
A
NA
404
H
NA
NA
1_555
metalc
2.403
A
LEU
62
A
O
LEU
62
1_555
A
NA
404
H
NA
NA
1_555
metalc
2.420
A
VAL
65
A
O
VAL
65
1_555
A
NA
404
H
NA
NA
1_555
metalc
2.677
A
THR
101
A
O
THR
101
1_555
A
NA
403
G
NA
NA
1_555
metalc
2.754
A
VAL
103
A
O
VAL
103
1_555
A
NA
403
G
NA
NA
1_555
metalc
2.693
A
ILE
106
A
O
ILE
106
1_555
A
NA
403
G
NA
NA
1_555
metalc
2.040
A
ASP
190
A
OD1
ASP
190
1_555
A
MG
402
F
MG
MG
1_555
metalc
2.306
A
ASP
192
A
OD2
ASP
192
1_555
A
MG
402
F
MG
MG
1_555
metalc
2.110
A
DUP
401
E
O3G
DUP
1_555
A
MG
402
F
MG
MG
1_555
metalc
2.228
A
DUP
401
E
O1A
DUP
1_555
A
MG
402
F
MG
MG
1_555
metalc
2.290
A
DUP
401
E
O2B
DUP
1_555
A
MG
402
F
MG
MG
1_555
metalc
2.155
A
MG
402
F
MG
MG
1_555
A
HOH
510
M
O
HOH
1_555
metalc
2.563
A
NA
403
G
NA
NA
1_555
P
DG
9
C
OP1
DG
9
1_555
metalc
2.658
A
NA
403
G
NA
NA
1_555
P
HOH
104
O
O
HOH
1_555
metalc
2.575
A
NA
403
G
NA
NA
1_555
P
HOH
106
O
O
HOH
1_555
metalc
2.407
A
NA
404
H
NA
NA
1_555
D
DC
3
D
OP1
DC
3
1_555
metalc
2.498
A
NA
404
H
NA
NA
1_555
D
HOH
103
P
O
HOH
1_555
hydrog
WATSON-CRICK
T
DC
1
B
N3
DC
1
1_555
D
DG
5
D
N1
DG
5
1_555
hydrog
WATSON-CRICK
T
DC
1
B
N4
DC
1
1_555
D
DG
5
D
O6
DG
5
1_555
hydrog
WATSON-CRICK
T
DC
1
B
O2
DC
1
1_555
D
DG
5
D
N2
DG
5
1_555
hydrog
WATSON-CRICK
T
DC
2
B
N3
DC
2
1_555
D
DG
4
D
N1
DG
4
1_555
hydrog
WATSON-CRICK
T
DC
2
B
N4
DC
2
1_555
D
DG
4
D
O6
DG
4
1_555
hydrog
WATSON-CRICK
T
DC
2
B
O2
DC
2
1_555
D
DG
4
D
N2
DG
4
1_555
hydrog
WATSON-CRICK
T
DG
3
B
N1
DG
3
1_555
D
DC
3
D
N3
DC
3
1_555
hydrog
WATSON-CRICK
T
DG
3
B
N2
DG
3
1_555
D
DC
3
D
O2
DC
3
1_555
hydrog
WATSON-CRICK
T
DG
3
B
O6
DG
3
1_555
D
DC
3
D
N4
DC
3
1_555
hydrog
WATSON-CRICK
T
DA
4
B
N1
DA
4
1_555
D
DT
2
D
N3
DT
2
1_555
hydrog
WATSON-CRICK
T
DA
4
B
N6
DA
4
1_555
D
DT
2
D
O4
DT
2
1_555
hydrog
WATSON-CRICK
T
DC
5
B
N3
DC
5
1_555
D
DG
1
D
N1
DG
1
1_555
hydrog
WATSON-CRICK
T
DC
5
B
N4
DC
5
1_555
D
DG
1
D
O6
DG
1
1_555
hydrog
WATSON-CRICK
T
DC
5
B
O2
DC
5
1_555
D
DG
1
D
N2
DG
1
1_555
hydrog
WATSON-CRICK
T
DG
7
B
N1
DG
7
1_555
P
DC
10
C
N3
DC
10
1_555
hydrog
WATSON-CRICK
T
DG
7
B
N2
DG
7
1_555
P
DC
10
C
O2
DC
10
1_555
hydrog
WATSON-CRICK
T
DG
7
B
O6
DG
7
1_555
P
DC
10
C
N4
DC
10
1_555
hydrog
WATSON-CRICK
T
DC
8
B
N3
DC
8
1_555
P
DG
9
C
N1
DG
9
1_555
hydrog
WATSON-CRICK
T
DC
8
B
N4
DC
8
1_555
P
DG
9
C
O6
DG
9
1_555
hydrog
WATSON-CRICK
T
DC
8
B
O2
DC
8
1_555
P
DG
9
C
N2
DG
9
1_555
hydrog
WATSON-CRICK
T
DG
9
B
N1
DG
9
1_555
P
DC
8
C
N3
DC
8
1_555
hydrog
WATSON-CRICK
T
DG
9
B
N2
DG
9
1_555
P
DC
8
C
O2
DC
8
1_555
hydrog
WATSON-CRICK
T
DG
9
B
O6
DG
9
1_555
P
DC
8
C
N4
DC
8
1_555
hydrog
WATSON-CRICK
T
DC
10
B
N3
DC
10
1_555
P
DG
7
C
N1
DG
7
1_555
hydrog
WATSON-CRICK
T
DC
10
B
N4
DC
10
1_555
P
DG
7
C
O6
DG
7
1_555
hydrog
WATSON-CRICK
T
DC
10
B
O2
DC
10
1_555
P
DG
7
C
N2
DG
7
1_555
hydrog
WATSON-CRICK
T
DA
11
B
N1
DA
11
1_555
P
DT
6
C
N3
DT
6
1_555
hydrog
WATSON-CRICK
T
DA
11
B
N6
DA
11
1_555
P
DT
6
C
O4
DT
6
1_555
hydrog
WATSON-CRICK
T
DT
12
B
N3
DT
12
1_555
P
DA
5
C
N1
DA
5
1_555
hydrog
WATSON-CRICK
T
DT
12
B
O4
DT
12
1_555
P
DA
5
C
N6
DA
5
1_555
hydrog
WATSON-CRICK
T
DC
13
B
N3
DC
13
1_555
P
DG
4
C
N1
DG
4
1_555
hydrog
WATSON-CRICK
T
DC
13
B
N4
DC
13
1_555
P
DG
4
C
O6
DG
4
1_555
hydrog
WATSON-CRICK
T
DC
13
B
O2
DC
13
1_555
P
DG
4
C
N2
DG
4
1_555
hydrog
WATSON-CRICK
T
DA
14
B
N1
DA
14
1_555
P
DT
3
C
N3
DT
3
1_555
hydrog
WATSON-CRICK
T
DA
14
B
N6
DA
14
1_555
P
DT
3
C
O4
DT
3
1_555
hydrog
WATSON-CRICK
T
DG
15
B
N1
DG
15
1_555
P
DC
2
C
N3
DC
2
1_555
hydrog
WATSON-CRICK
T
DG
15
B
N2
DG
15
1_555
P
DC
2
C
O2
DC
2
1_555
hydrog
WATSON-CRICK
T
DG
15
B
O6
DG
15
1_555
P
DC
2
C
N4
DC
2
1_555
hydrog
WATSON-CRICK
T
DC
16
B
N3
DC
16
1_555
P
DG
1
C
N1
DG
1
1_555
hydrog
WATSON-CRICK
T
DC
16
B
N4
DC
16
1_555
P
DG
1
C
O6
DG
1
1_555
hydrog
WATSON-CRICK
T
DC
16
B
O2
DC
16
1_555
P
DG
1
C
N2
DG
1
1_555
Transferase/DNA
Nucleotidyl Transfer, dNTP, Non-hydrolyzable analog, Transferase-DNA complex
A
GLY
274
A
GLY
274
1
A
SER
275
A
SER
275
1.18
DPOLB_HUMAN
UNP
1
1
P06746
MSKRKAPQETLNGGITDMLTELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIAEKIDEFLATG
KLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNEDKLNHHQRIGLKYFGDFEKRIPREEMLQMQD
IVLNEVKKVDSEYIATVCGSFRRGAESSGDMDVLLTHPSFTSESTKQPKLLHQVVEQLQKVHFITDTLSKGETKFMGVCQ
LPSKNDEKEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPLGVTGVAGEPLPVDSEKDIF
DYIQWKYREPKDRSE
4JWN
PDB
2
4JWN
4JWN
PDB
3
4JWN
4JWN
PDB
4
4JWN
1
335
4JWN
1
335
P06746
A
1
1
335
1
16
4JWN
1
16
4JWN
T
2
1
16
1
10
4JWN
1
10
4JWN
P
3
1
10
1
5
4JWN
1
5
4JWN
D
4
1
5
1
ASP
engineered mutation
ALA
256
4JWN
A
P06746
UNP
256
256
2
5
2
2
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
ILE
150
A
ILE
150
A
PRO
151
A
PRO
151
A
SER
187
A
SER
187
A
SER
188
A
SER
188
A
ILE
174
A
ILE
174
A
VAL
177
A
VAL
177
A
MET
191
A
MET
191
A
THR
196
A
THR
196
A
ARG
253
A
ARG
253
A
LEU
259
A
LEU
259
A
LYS
234
A
LYS
234
A
CYS
239
A
CYS
239
A
ILE
224
A
ILE
224
A
LYS
230
A
LYS
230
A
PHE
200
A
PHE
200
A
THR
201
A
THR
201
A
SER
204
A
SER
204
A
THR
205
A
THR
205
A
PHE
291
A
PHE
291
A
ILE
293
A
ILE
293
A
ILE
298
A
ILE
298
A
PRO
300
A
PRO
300
BINDING SITE FOR RESIDUE DUP A 401
A
DUP
401
Software
18
BINDING SITE FOR RESIDUE MG A 402
A
MG
402
Software
4
BINDING SITE FOR RESIDUE NA A 403
A
NA
403
Software
6
BINDING SITE FOR RESIDUE NA A 404
A
NA
404
Software
5
BINDING SITE FOR RESIDUE CL A 405
A
CL
405
Software
3
BINDING SITE FOR RESIDUE CL A 406
A
CL
406
Software
3
BINDING SITE FOR RESIDUE CL A 407
A
CL
407
Software
3
BINDING SITE FOR RESIDUE CL A 408
A
CL
408
Software
4
A
GLY
179
A
GLY
179
18
1_555
A
SER
180
A
SER
180
18
1_555
A
ARG
183
A
ARG
183
18
1_555
A
SER
188
A
SER
188
18
1_555
A
GLY
189
A
GLY
189
18
1_555
A
ASP
190
A
ASP
190
18
1_555
A
ASP
192
A
ASP
192
18
1_555
A
TYR
271
A
TYR
271
18
1_555
A
PHE
272
A
PHE
272
18
1_555
A
THR
273
A
THR
273
18
1_555
A
GLY
274
A
GLY
274
18
1_555
A
ASP
276
A
ASP
276
18
1_555
A
ASN
279
A
ASN
279
18
1_555
A
MG
402
F
MG
18
1_555
A
HOH
512
M
HOH
18
1_555
A
HOH
649
M
HOH
18
1_555
P
DC
10
C
DC
10
18
1_555
T
DA
6
B
DA
6
18
1_555
A
ASP
190
A
ASP
190
4
1_555
A
ASP
192
A
ASP
192
4
1_555
A
DUP
401
E
DUP
4
1_555
A
HOH
510
M
HOH
4
1_555
A
THR
101
A
THR
101
6
1_555
A
VAL
103
A
VAL
103
6
1_555
A
ILE
106
A
ILE
106
6
1_555
P
DG
9
C
DG
9
6
1_555
P
HOH
104
O
HOH
6
1_555
P
HOH
106
O
HOH
6
1_555
A
LYS
60
A
LYS
60
5
1_555
A
LEU
62
A
LEU
62
5
1_555
A
VAL
65
A
VAL
65
5
1_555
D
DC
3
D
DC
3
5
1_555
D
HOH
103
P
HOH
5
1_555
A
ASN
294
A
ASN
294
3
1_555
A
THR
297
A
THR
297
3
1_555
A
ARG
299
A
ARG
299
3
1_555
A
ALA
32
A
ALA
32
3
1_555
A
HIS
34
A
HIS
34
3
1_555
A
LYS
35
A
LYS
35
3
1_555
A
LYS
81
A
LYS
81
3
1_555
A
LEU
82
A
LEU
82
3
1_555
A
ARG
89
A
ARG
89
3
1_555
A
GLN
264
A
GLN
264
4
1_555
A
TYR
266
A
TYR
266
4
1_555
A
CYS
267
A
CYS
267
4
1_555
A
VAL
313
A
VAL
313
4
1_555
4
P 1 21 1