0.010707
0.000000
0.000000
0.000000
0.004262
0.000000
0.000000
0.000000
0.008795
0.00000
0.00000
0.00000
Perona, J.J.
Rodriguez-Hernandez, A.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
93.400
234.620
113.700
C12 H16 N3 O10 P S
425.308
n
(E)-N-{[4-oxo-1-(5-O-phosphono-beta-D-arabinofuranosyl)-2-thioxo-1,2,3,4-tetrahydropyrimidin-5-yl]methylidene}glycine
RNA linking
C11 H16 N5 O7 P
361.248
n
2-METHYLADENOSINE-5'-MONOPHOSPHATE
RNA linking
C9 H13 N2 O8 P S
340.247
n
4-THIOURIDINE-5'-MONOPHOSPHATE
RNA linking
C10 H15 N2 O9 P
338.208
n
5-METHYLURIDINE 5'-MONOPHOSPHATE
RNA linking
C10 H14 N5 O7 P
347.221
y
ADENOSINE-5'-MONOPHOSPHATE
RNA linking
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C10 H16 N5 O13 P3
507.181
ADENOSINE-5'-TRIPHOSPHATE
non-polymer
C9 H14 N3 O8 P
323.197
y
CYTIDINE-5'-MONOPHOSPHATE
RNA linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C10 H14 N5 O8 P
363.221
y
GUANOSINE-5'-MONOPHOSPHATE
RNA linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C9 H15 N2 O9 P
326.197
n
5,6-DIHYDROURIDINE-5'-MONOPHOSPHATE
RNA linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C11 H16 N5 O8 P
377.247
n
O2'-METHYLGUANOSINE-5'-MONOPHOSPHATE
RNA linking
C10 H15 N2 O9 P
338.208
n
O2'-METHYLURIDINE 5'-MONOPHOSPHATE
RNA linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C9 H13 N2 O9 P
324.181
n
PSEUDOURIDINE-5'-MONOPHOSPHATE
RNA linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
O4 S -2
96.063
SULFATE ION
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C9 H13 N2 O9 P
324.181
y
URIDINE-5'-MONOPHOSPHATE
RNA linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
N
C
N
3
N
S
N
4
N
N
N
5
N
C
N
6
N
O
N
7
N
C
N
8
N
C
N
9
R
C
N
10
N
O
N
11
S
C
N
12
N
O
N
13
S
C
N
14
R
C
N
15
N
O
N
16
N
C
N
17
N
O
N
18
N
P
N
19
N
O
N
20
N
O
N
21
N
C
N
22
N
N
N
23
N
C
N
24
N
C
N
25
N
O
N
26
N
O
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
H
N
42
N
O
N
43
N
H
N
44
N
P
N
45
N
O
N
46
N
O
N
47
N
O
N
48
N
O
N
49
N
C
N
50
R
C
N
51
N
O
N
52
S
C
N
53
N
O
N
54
R
C
N
55
N
O
N
56
R
C
Y
57
N
N
Y
58
N
C
Y
59
N
N
Y
60
N
C
N
61
N
C
N
62
N
N
N
63
N
N
N
64
N
C
N
65
N
C
N
66
N
N
Y
67
N
C
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
H
N
79
N
H
N
80
N
H
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
N
N
85
N
C
N
86
N
N
N
87
N
C
N
88
N
C
N
89
N
C
N
90
N
O
N
91
N
S
N
92
R
C
N
93
R
C
N
94
N
O
N
95
S
C
N
96
R
C
N
97
N
O
N
98
N
O
N
99
N
C
N
100
N
O
N
101
N
P
N
102
N
O
N
103
N
O
N
104
N
O
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
N
N
119
N
C
N
120
N
N
N
121
N
C
N
122
N
C
N
123
N
C
N
124
N
C
N
125
N
O
N
126
N
O
N
127
R
C
N
128
R
C
N
129
N
O
N
130
S
C
N
131
R
C
N
132
N
O
N
133
N
O
N
134
N
C
N
135
N
O
N
136
N
P
N
137
N
O
N
138
N
O
N
139
N
O
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
O
N
156
N
P
N
157
N
O
N
158
N
O
N
159
N
O
N
160
N
C
N
161
R
C
N
162
N
O
N
163
S
C
N
164
N
O
N
165
R
C
N
166
N
O
N
167
R
C
Y
168
N
N
Y
169
N
C
Y
170
N
N
Y
171
N
C
Y
172
N
C
N
173
N
N
Y
174
N
N
Y
175
N
C
Y
176
N
N
Y
177
N
C
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
N
N
193
S
C
N
194
N
C
N
195
N
O
N
196
N
C
N
197
N
O
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
N
N
213
N
C
N
214
N
N
N
215
N
N
N
216
N
O
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
N
N
233
S
C
N
234
N
C
N
235
N
O
N
236
N
C
N
237
N
C
N
238
N
O
N
239
N
N
N
240
N
O
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
N
N
250
S
C
N
251
N
C
N
252
N
O
N
253
N
C
N
254
N
C
N
255
N
O
N
256
N
O
N
257
N
O
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
P
N
266
N
O
N
267
N
O
N
268
N
O
N
269
R
P
N
270
N
O
N
271
N
O
N
272
N
O
N
273
R
P
N
274
N
O
N
275
N
O
N
276
N
O
N
277
N
O
N
278
N
C
N
279
R
C
N
280
N
O
N
281
S
C
N
282
N
O
N
283
R
C
N
284
N
O
N
285
R
C
Y
286
N
N
Y
287
N
C
Y
288
N
N
Y
289
N
C
Y
290
N
C
N
291
N
N
Y
292
N
N
Y
293
N
C
Y
294
N
N
Y
295
N
C
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
O
N
313
N
P
N
314
N
O
N
315
N
O
N
316
N
O
N
317
N
C
N
318
R
C
N
319
N
O
N
320
S
C
N
321
N
O
N
322
R
C
N
323
N
O
N
324
R
C
N
325
N
N
N
326
N
C
N
327
N
O
N
328
N
N
N
329
N
C
N
330
N
N
N
331
N
C
N
332
N
C
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
N
N
348
R
C
N
349
N
C
N
350
N
O
N
351
N
C
N
352
N
S
N
353
N
O
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
O
N
362
N
P
N
363
N
O
N
364
N
O
N
365
N
O
N
366
N
C
N
367
R
C
N
368
N
O
N
369
S
C
N
370
N
O
N
371
R
C
N
372
N
O
N
373
R
C
Y
374
N
N
Y
375
N
C
Y
376
N
N
Y
377
N
C
N
378
N
C
N
379
N
O
N
380
N
N
N
381
N
C
N
382
N
N
N
383
N
N
Y
384
N
C
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
N
N
400
S
C
N
401
N
C
N
402
N
O
N
403
N
C
N
404
N
C
N
405
N
C
N
406
N
O
N
407
N
N
N
408
N
O
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
N
N
420
S
C
N
421
N
C
N
422
N
O
N
423
N
C
N
424
N
C
N
425
N
C
N
426
N
O
N
427
N
O
N
428
N
O
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
N
N
439
N
C
N
440
N
C
N
441
N
O
N
442
N
O
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
P
N
449
N
O
N
450
N
O
N
451
N
O
N
452
N
O
N
453
N
C
N
454
R
C
N
455
N
O
N
456
S
C
N
457
N
O
N
458
R
C
N
459
R
C
N
460
N
O
N
461
N
N
N
462
N
C
N
463
N
O
N
464
N
N
N
465
N
C
N
466
N
O
N
467
N
C
N
468
N
C
N
469
N
H
N
470
N
H
N
471
N
H
N
472
N
H
N
473
N
H
N
474
N
H
N
475
N
H
N
476
N
H
N
477
N
H
N
478
N
H
N
479
N
H
N
480
N
H
N
481
N
H
N
482
N
H
N
483
N
H
N
484
N
N
N
485
S
C
N
486
N
C
N
487
N
O
N
488
N
C
Y
489
N
C
Y
490
N
N
Y
491
N
C
Y
492
N
C
Y
493
N
N
N
494
N
O
N
495
N
H
N
496
N
H
N
497
N
H
N
498
N
H
N
499
N
H
N
500
N
H
N
501
N
H
N
502
N
H
N
503
N
H
N
504
N
H
N
505
N
O
N
506
N
H
N
507
N
H
N
508
N
N
N
509
S
C
N
510
N
C
N
511
N
O
N
512
S
C
N
513
N
C
N
514
N
C
N
515
N
C
N
516
N
O
N
517
N
H
N
518
N
H
N
519
N
H
N
520
N
H
N
521
N
H
N
522
N
H
N
523
N
H
N
524
N
H
N
525
N
H
N
526
N
H
N
527
N
H
N
528
N
H
N
529
N
H
N
530
N
N
N
531
S
C
N
532
N
C
N
533
N
O
N
534
N
C
N
535
N
C
N
536
N
C
N
537
N
C
N
538
N
O
N
539
N
H
N
540
N
H
N
541
N
H
N
542
N
H
N
543
N
H
N
544
N
H
N
545
N
H
N
546
N
H
N
547
N
H
N
548
N
H
N
549
N
H
N
550
N
H
N
551
N
H
N
552
N
N
N
553
S
C
N
554
N
C
N
555
N
O
N
556
N
C
N
557
N
C
N
558
N
C
N
559
N
C
N
560
N
N
N
561
N
O
N
562
N
H
N
563
N
H
N
564
N
H
N
565
N
H
N
566
N
H
N
567
N
H
N
568
N
H
N
569
N
H
N
570
N
H
N
571
N
H
N
572
N
H
N
573
N
H
N
574
N
H
N
575
N
H
N
576
N
H
N
577
N
N
N
578
S
C
N
579
N
C
N
580
N
O
N
581
N
C
N
582
N
C
N
583
N
S
N
584
N
C
N
585
N
O
N
586
N
H
N
587
N
H
N
588
N
H
N
589
N
H
N
590
N
H
N
591
N
H
N
592
N
H
N
593
N
H
N
594
N
H
N
595
N
H
N
596
N
H
N
597
N
P
N
598
N
O
N
599
N
O
N
600
N
O
N
601
N
O
N
602
N
C
N
603
R
C
N
604
N
O
N
605
R
C
N
606
N
O
N
607
R
C
N
608
N
O
N
609
N
C
N
610
R
C
Y
611
N
N
Y
612
N
C
Y
613
N
N
Y
614
N
C
N
615
N
C
N
616
N
O
N
617
N
N
N
618
N
C
N
619
N
N
N
620
N
N
Y
621
N
C
N
622
N
H
N
623
N
H
N
624
N
H
N
625
N
H
N
626
N
H
N
627
N
H
N
628
N
H
N
629
N
H
N
630
N
H
N
631
N
H
N
632
N
H
N
633
N
H
N
634
N
H
N
635
N
H
N
636
N
H
N
637
N
H
N
638
N
N
N
639
N
C
N
640
N
N
N
641
N
C
N
642
N
C
N
643
N
C
N
644
N
O
N
645
N
O
N
646
R
C
N
647
R
C
N
648
N
O
N
649
N
C
N
650
R
C
N
651
R
C
N
652
N
O
N
653
N
O
N
654
N
C
N
655
N
O
N
656
N
P
N
657
N
O
N
658
N
O
N
659
N
O
N
660
N
H
N
661
N
H
N
662
N
H
N
663
N
H
N
664
N
H
N
665
N
H
N
666
N
H
N
667
N
H
N
668
N
H
N
669
N
H
N
670
N
H
N
671
N
H
N
672
N
H
N
673
N
H
N
674
N
H
N
675
N
N
N
676
S
C
N
677
N
C
N
678
N
O
N
679
N
C
Y
680
N
C
Y
681
N
C
Y
682
N
C
Y
683
N
C
Y
684
N
C
Y
685
N
C
N
686
N
O
N
687
N
H
N
688
N
H
N
689
N
H
N
690
N
H
N
691
N
H
N
692
N
H
N
693
N
H
N
694
N
H
N
695
N
H
N
696
N
H
N
697
N
H
N
698
N
N
N
699
S
C
N
700
N
C
N
701
N
O
N
702
N
C
N
703
N
C
N
704
N
C
N
705
N
O
N
706
N
H
N
707
N
H
N
708
N
H
N
709
N
H
N
710
N
H
N
711
N
H
N
712
N
H
N
713
N
H
N
714
N
H
N
715
N
N
N
716
N
C
N
717
N
N
N
718
N
C
N
719
N
C
N
720
N
C
N
721
N
O
N
722
N
O
N
723
S
C
N
724
R
C
N
725
N
O
N
726
S
C
N
727
R
C
N
728
N
O
N
729
N
O
N
730
N
C
N
731
N
O
N
732
N
P
N
733
N
O
N
734
N
O
N
735
N
O
N
736
N
H
N
737
N
H
N
738
N
H
N
739
N
H
N
740
N
H
N
741
N
H
N
742
N
H
N
743
N
H
N
744
N
H
N
745
N
H
N
746
N
H
N
747
N
H
N
748
N
H
N
749
N
N
N
750
S
C
N
751
N
C
N
752
N
O
N
753
N
C
N
754
N
O
N
755
N
O
N
756
N
H
N
757
N
H
N
758
N
H
N
759
N
H
N
760
N
H
N
761
N
H
N
762
N
H
N
763
N
S
N
764
N
O
N
765
N
O
N
766
N
O
N
767
N
O
N
768
N
N
N
769
S
C
N
770
N
C
N
771
N
O
N
772
R
C
N
773
N
O
N
774
N
C
N
775
N
O
N
776
N
H
N
777
N
H
N
778
N
H
N
779
N
H
N
780
N
H
N
781
N
H
N
782
N
H
N
783
N
H
N
784
N
H
N
785
N
N
N
786
S
C
N
787
N
C
N
788
N
O
N
789
N
C
Y
790
N
C
Y
791
N
C
Y
792
N
C
Y
793
N
N
Y
794
N
C
Y
795
N
C
Y
796
N
C
Y
797
N
C
Y
798
N
C
N
799
N
O
N
800
N
H
N
801
N
H
N
802
N
H
N
803
N
H
N
804
N
H
N
805
N
H
N
806
N
H
N
807
N
H
N
808
N
H
N
809
N
H
N
810
N
H
N
811
N
H
N
812
N
N
N
813
S
C
N
814
N
C
N
815
N
O
N
816
N
C
Y
817
N
C
Y
818
N
C
Y
819
N
C
Y
820
N
C
Y
821
N
C
Y
822
N
C
N
823
N
O
N
824
N
O
N
825
N
H
N
826
N
H
N
827
N
H
N
828
N
H
N
829
N
H
N
830
N
H
N
831
N
H
N
832
N
H
N
833
N
H
N
834
N
H
N
835
N
H
N
836
N
O
N
837
N
P
N
838
N
O
N
839
N
O
N
840
N
O
N
841
N
C
N
842
R
C
N
843
N
O
N
844
S
C
N
845
N
O
N
846
R
C
N
847
N
O
N
848
R
C
N
849
N
N
N
850
N
C
N
851
N
O
N
852
N
N
N
853
N
C
N
854
N
O
N
855
N
C
N
856
N
C
N
857
N
H
N
858
N
H
N
859
N
H
N
860
N
H
N
861
N
H
N
862
N
H
N
863
N
H
N
864
N
H
N
865
N
H
N
866
N
H
N
867
N
H
N
868
N
H
N
869
N
H
N
870
N
N
N
871
S
C
N
872
N
C
N
873
N
O
N
874
N
C
N
875
N
C
N
876
N
C
N
877
N
O
N
878
N
H
N
879
N
H
N
880
N
H
N
881
N
H
N
882
N
H
N
883
N
H
N
884
N
H
N
885
N
H
N
886
N
H
N
887
N
H
N
888
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
doub
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
doub
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
doub
N
23
N
doub
N
24
N
sing
N
25
N
sing
N
26
N
doub
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
Y
69
N
sing
Y
70
N
sing
Y
71
N
doub
N
72
N
sing
Y
73
N
sing
N
74
N
sing
Y
75
N
doub
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
doub
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
doub
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
doub
N
96
N
doub
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
doub
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
doub
N
131
N
sing
N
132
N
doub
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
doub
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
doub
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
Y
184
N
sing
Y
185
N
sing
Y
186
N
doub
N
187
N
sing
Y
188
N
sing
Y
189
N
sing
Y
190
N
doub
N
191
N
sing
Y
192
N
doub
N
193
N
sing
N
194
N
sing
Y
195
N
sing
Y
196
N
doub
N
197
N
sing
Y
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
doub
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
doub
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
doub
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
doub
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
doub
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
doub
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
doub
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
doub
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
doub
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
Y
302
N
sing
Y
303
N
sing
Y
304
N
doub
N
305
N
sing
Y
306
N
sing
Y
307
N
sing
Y
308
N
doub
N
309
N
sing
Y
310
N
doub
N
311
N
sing
N
312
N
sing
Y
313
N
sing
Y
314
N
doub
N
315
N
sing
Y
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
doub
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
doub
N
344
N
sing
N
345
N
doub
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
doub
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
doub
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
doub
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
Y
390
N
sing
Y
391
N
sing
Y
392
N
doub
N
393
N
sing
Y
394
N
sing
N
395
N
sing
Y
396
N
doub
N
397
N
doub
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
doub
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
doub
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
doub
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
doub
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
doub
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
doub
N
450
N
sing
N
451
N
sing
N
452
N
doub
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
sing
N
464
N
sing
N
465
N
sing
N
466
N
sing
N
467
N
sing
N
468
N
sing
N
469
N
sing
N
470
N
sing
N
471
N
sing
N
472
N
sing
N
473
N
sing
N
474
N
sing
N
475
N
sing
N
476
N
sing
N
477
N
sing
N
478
N
doub
N
479
N
sing
N
480
N
sing
N
481
N
sing
N
482
N
doub
N
483
N
sing
N
484
N
sing
N
485
N
sing
N
486
N
sing
N
487
N
sing
N
488
N
sing
N
489
N
sing
N
490
N
sing
N
491
N
sing
N
492
N
sing
N
493
N
sing
N
494
N
sing
N
495
N
doub
N
496
N
sing
N
497
N
sing
N
498
N
sing
N
499
N
sing
Y
500
N
sing
Y
501
N
doub
Y
502
N
doub
N
503
N
sing
Y
504
N
sing
N
505
N
sing
Y
506
N
sing
N
507
N
sing
N
508
N
sing
N
509
N
sing
N
510
N
sing
N
511
N
sing
N
512
N
sing
N
513
N
sing
N
514
N
sing
N
515
N
sing
N
516
N
sing
N
517
N
sing
N
518
N
doub
N
519
N
sing
N
520
N
sing
N
521
N
sing
N
522
N
sing
N
523
N
sing
N
524
N
sing
N
525
N
sing
N
526
N
sing
N
527
N
sing
N
528
N
sing
N
529
N
sing
N
530
N
sing
N
531
N
sing
N
532
N
sing
N
533
N
sing
N
534
N
sing
N
535
N
sing
N
536
N
sing
N
537
N
sing
N
538
N
sing
N
539
N
doub
N
540
N
sing
N
541
N
sing
N
542
N
sing
N
543
N
sing
N
544
N
sing
N
545
N
sing
N
546
N
sing
N
547
N
sing
N
548
N
sing
N
549
N
sing
N
550
N
sing
N
551
N
sing
N
552
N
sing
N
553
N
sing
N
554
N
sing
N
555
N
sing
N
556
N
sing
N
557
N
sing
N
558
N
sing
N
559
N
sing
N
560
N
doub
N
561
N
sing
N
562
N
sing
N
563
N
sing
N
564
N
sing
N
565
N
sing
N
566
N
sing
N
567
N
sing
N
568
N
sing
N
569
N
sing
N
570
N
sing
N
571
N
sing
N
572
N
sing
N
573
N
sing
N
574
N
sing
N
575
N
sing
N
576
N
sing
N
577
N
sing
N
578
N
sing
N
579
N
sing
N
580
N
sing
N
581
N
sing
N
582
N
sing
N
583
N
sing
N
584
N
doub
N
585
N
sing
N
586
N
sing
N
587
N
sing
N
588
N
sing
N
589
N
sing
N
590
N
sing
N
591
N
sing
N
592
N
sing
N
593
N
sing
N
594
N
sing
N
595
N
sing
N
596
N
sing
N
597
N
doub
N
598
N
sing
N
599
N
sing
N
600
N
sing
N
601
N
sing
N
602
N
sing
N
603
N
sing
N
604
N
sing
N
605
N
sing
N
606
N
sing
N
607
N
sing
N
608
N
sing
N
609
N
sing
N
610
N
sing
N
611
N
sing
N
612
N
sing
N
613
N
sing
N
614
N
sing
N
615
N
sing
N
616
N
sing
N
617
N
sing
N
618
N
sing
N
619
N
sing
N
620
N
sing
N
621
N
sing
N
622
N
sing
N
623
N
sing
Y
624
N
sing
Y
625
N
sing
Y
626
N
doub
N
627
N
sing
Y
628
N
sing
N
629
N
sing
Y
630
N
doub
N
631
N
doub
N
632
N
sing
N
633
N
sing
N
634
N
sing
N
635
N
sing
N
636
N
doub
N
637
N
sing
N
638
N
sing
N
639
N
sing
N
640
N
sing
N
641
N
sing
N
642
N
sing
N
643
N
sing
N
644
N
doub
N
645
N
sing
N
646
N
sing
N
647
N
sing
N
648
N
doub
N
649
N
doub
N
650
N
sing
N
651
N
sing
N
652
N
sing
N
653
N
sing
N
654
N
sing
N
655
N
sing
N
656
N
sing
N
657
N
sing
N
658
N
sing
N
659
N
sing
N
660
N
sing
N
661
N
sing
N
662
N
sing
N
663
N
sing
N
664
N
sing
N
665
N
sing
N
666
N
sing
N
667
N
sing
N
668
N
sing
N
669
N
sing
N
670
N
sing
N
671
N
sing
N
672
N
sing
N
673
N
doub
N
674
N
sing
N
675
N
sing
N
676
N
sing
N
677
N
sing
N
678
N
sing
N
679
N
sing
N
680
N
sing
N
681
N
sing
N
682
N
sing
N
683
N
sing
N
684
N
doub
N
685
N
sing
N
686
N
sing
N
687
N
sing
N
688
N
sing
Y
689
N
doub
Y
690
N
sing
Y
691
N
sing
N
692
N
sing
Y
693
N
doub
N
694
N
sing
Y
695
N
doub
N
696
N
sing
Y
697
N
sing
N
698
N
sing
N
699
N
sing
N
700
N
sing
N
701
N
sing
N
702
N
sing
N
703
N
sing
N
704
N
sing
N
705
N
sing
N
706
N
sing
N
707
N
doub
N
708
N
sing
N
709
N
sing
N
710
N
sing
N
711
N
sing
N
712
N
sing
N
713
N
sing
N
714
N
sing
N
715
N
sing
N
716
N
sing
N
717
N
sing
N
718
N
sing
N
719
N
sing
N
720
N
sing
N
721
N
sing
N
722
N
doub
N
723
N
sing
N
724
N
sing
N
725
N
sing
N
726
N
doub
N
727
N
doub
N
728
N
sing
N
729
N
sing
N
730
N
sing
N
731
N
sing
N
732
N
sing
N
733
N
sing
N
734
N
sing
N
735
N
sing
N
736
N
sing
N
737
N
sing
N
738
N
sing
N
739
N
sing
N
740
N
sing
N
741
N
sing
N
742
N
sing
N
743
N
sing
N
744
N
sing
N
745
N
sing
N
746
N
sing
N
747
N
sing
N
748
N
doub
N
749
N
sing
N
750
N
sing
N
751
N
sing
N
752
N
sing
N
753
N
sing
N
754
N
sing
N
755
N
sing
N
756
N
sing
N
757
N
sing
N
758
N
sing
N
759
N
doub
N
760
N
sing
N
761
N
sing
N
762
N
sing
N
763
N
sing
N
764
N
sing
N
765
N
sing
N
766
N
doub
N
767
N
doub
N
768
N
sing
N
769
N
sing
N
770
N
sing
N
771
N
sing
N
772
N
sing
N
773
N
sing
N
774
N
sing
N
775
N
sing
N
776
N
doub
N
777
N
sing
N
778
N
sing
N
779
N
sing
N
780
N
sing
N
781
N
sing
N
782
N
sing
N
783
N
sing
N
784
N
sing
N
785
N
sing
N
786
N
sing
N
787
N
sing
N
788
N
sing
N
789
N
sing
N
790
N
sing
N
791
N
sing
N
792
N
doub
N
793
N
sing
N
794
N
sing
N
795
N
sing
N
796
N
sing
Y
797
N
doub
Y
798
N
sing
Y
799
N
sing
N
800
N
sing
Y
801
N
doub
Y
802
N
sing
Y
803
N
sing
N
804
N
sing
Y
805
N
sing
Y
806
N
doub
N
807
N
sing
Y
808
N
doub
N
809
N
sing
Y
810
N
sing
N
811
N
sing
N
812
N
sing
N
813
N
sing
N
814
N
sing
N
815
N
sing
N
816
N
sing
N
817
N
sing
N
818
N
sing
N
819
N
sing
N
820
N
doub
N
821
N
sing
N
822
N
sing
N
823
N
sing
N
824
N
sing
Y
825
N
doub
Y
826
N
sing
Y
827
N
sing
N
828
N
sing
Y
829
N
doub
N
830
N
sing
Y
831
N
doub
N
832
N
sing
Y
833
N
sing
N
834
N
sing
N
835
N
sing
N
836
N
sing
N
837
N
sing
N
838
N
sing
N
839
N
sing
N
840
N
doub
N
841
N
sing
N
842
N
sing
N
843
N
sing
N
844
N
sing
N
845
N
sing
N
846
N
sing
N
847
N
sing
N
848
N
sing
N
849
N
sing
N
850
N
sing
N
851
N
sing
N
852
N
sing
N
853
N
sing
N
854
N
sing
N
855
N
sing
N
856
N
sing
N
857
N
sing
N
858
N
sing
N
859
N
sing
N
860
N
sing
N
861
N
sing
N
862
N
sing
N
863
N
sing
N
864
N
doub
N
865
N
sing
N
866
N
sing
N
867
N
sing
N
868
N
doub
N
869
N
sing
N
870
N
doub
N
871
N
sing
N
872
N
sing
N
873
N
sing
N
874
N
sing
N
875
N
sing
N
876
N
sing
N
877
N
sing
N
878
N
sing
N
879
N
doub
N
880
N
sing
N
881
N
sing
N
882
N
sing
N
883
N
sing
N
884
N
sing
N
885
N
sing
N
886
N
sing
N
887
N
sing
N
888
N
sing
N
889
N
sing
N
890
N
sing
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
425
3888
3906
10.1016/j.jmb.2013.05.018
23727144
Structural and Mechanistic Basis for Enhanced Translational Efficiency by 2-Thiouridine at the tRNA Anticodon Wobble Position.
2013
10.2210/pdb4jyz/pdb
pdb_00004jyz
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2012-01-05
NOIR-1
sagitally focused Si(111)
SINGLE WAVELENGTH
M
x-ray
1
1.0
1.0
4.2.2
ALS
1.0
SYNCHROTRON
ALS BEAMLINE 4.2.2
63434.641
Glutamine--tRNA ligase
6.1.1.18
1
man
polymer
24236.584
RNA (72-MER)
1
nat
polymer
507.181
ADENOSINE-5'-TRIPHOSPHATE
1
syn
non-polymer
96.063
SULFATE ION
2
syn
non-polymer
18.015
water
110
nat
water
Glutaminyl-tRNA synthetase, GlnRS
no
no
SEAEARPTNFIRQIIDEDLASGKHTTVHTRFPPEPNGYLHIGHAKSICLNFGIAQDYKGQCNLRFDDTNPVKEDIEYVES
IKNDVEWLGFHWSGNVRYSSDYFDQLHAYAIELINKGLAYVDELTPEQIREYRGTLTQPGKNSPYRDRSVEENLALFEKM
RAGGFEEGKACLRAKIDMASPFIVMRDPVLYRIKFAEHHQTGNKWCIYPMYDFTHCISDALEGITHSLCTLEFQDNRRLY
DWVLDNITIPVHPRQYEFSRLNLEYTVMSKRKLNLLVTDKHVEGWDDPRMPTISGLRRRGYTAASIREFCKRIGVTKQDN
TIEMASLESCIREDLNENAPRAMAVIDPVKLVIENYQGEGEMVTMPNHPNKPEMGSRQVPFSGEIWIDRADFREEANKQY
KRLVLGKEVRLRNAYVIKAERVEKDAEGNITTIFCTYDADTLSKDPADGRKVKGVIHWVSAAHALPVEIRLYDRLFSVPN
PGAADDFLSVINPESLVIKQGFAEPSLKDAVAGKAFQFEREGYFCLDSRHSTAEKPVFNRTVGLRDTWAKVGE
SEAEARPTNFIRQIIDEDLASGKHTTVHTRFPPEPNGYLHIGHAKSICLNFGIAQDYKGQCNLRFDDTNPVKEDIEYVES
IKNDVEWLGFHWSGNVRYSSDYFDQLHAYAIELINKGLAYVDELTPEQIREYRGTLTQPGKNSPYRDRSVEENLALFEKM
RAGGFEEGKACLRAKIDMASPFIVMRDPVLYRIKFAEHHQTGNKWCIYPMYDFTHCISDALEGITHSLCTLEFQDNRRLY
DWVLDNITIPVHPRQYEFSRLNLEYTVMSKRKLNLLVTDKHVEGWDDPRMPTISGLRRRGYTAASIREFCKRIGVTKQDN
TIEMASLESCIREDLNENAPRAMAVIDPVKLVIENYQGEGEMVTMPNHPNKPEMGSRQVPFSGEIWIDRADFREEANKQY
KRLVLGKEVRLRNAYVIKAERVEKDAEGNITTIFCTYDADTLSKDPADGRKVKGVIHWVSAAHALPVEIRLYDRLFSVPN
PGAADDFLSVINPESLVIKQGFAEPSLKDAVAGKAFQFEREGYFCLDSRHSTAEKPVFNRTVGLRDTWAKVGE
A
polypeptide(L)
no
yes
UGGGGUA(4SU)CGCCAAGC(OMG)G(H2U)AAGGCACCGGU(OMU)U(1RN)UG(2MA)(PSU)ACCGGCAUUCGCAGG
(5MU)(PSU)CGAAUCCUGCUACCCCAGCCA
UGGGGUAUCGCCAAGCGGUAAGGCACCGGUUUXUGAUACCGGCAUUCGCAGGUUCGAAUCCUGCUACCCCAGCCA
B
polyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
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n
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n
n
n
n
n
n
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n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
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n
K12
sample
glnS, b0680, JW0666
83333
Escherichia coli
562
Escherichia coli
sample
562
Escherichia coli
1
3.55
65.40
VAPOR DIFFUSION, HANGING DROP
7.0
0.36-0.4 w/v sodium citrate, 40 mM PIPES, 20 mM MgSO4, 20 mM b-mercaptoethanol, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 290K
290
-7.345
1
19
B
902
B
971
-2.118
B_G902:C971_B
1
2.192
-0.349
-0.144
-0.185
0.916
1
19
B
903
B
970
-2.423
B_G903:C970_B
2
-5.838
-0.118
0.256
-0.378
-9.517
1
19
B
904
B
969
-2.873
B_G904:C969_B
3
-13.626
0.211
-0.242
-0.281
-14.773
1
19
B
905
B
968
1.885
B_G905:C968_B
4
-15.147
-0.105
-0.280
-0.193
-9.359
1
20
B
906
B
967
7.187
B_U906:A967_B
5
-14.649
0.317
0.352
-0.090
6.464
1
20
B
907
B
966
-7.497
B_A907:U966_B
6
-6.363
0.143
0.301
-0.172
1.646
1
19
B
949
B
965
0.194
B_G949:C965_B
7
-12.454
-0.889
0.145
-0.795
5.919
1
19
B
950
B
964
1.069
B_C950:G964_B
8
-14.347
-0.335
0.049
-0.241
-4.898
1
20
B
951
B
963
7.262
B_A951:U963_B
9
-12.677
0.824
0.132
-0.427
0.022
1
19
B
952
B
962
-4.103
B_G952:C962_B
10
-13.257
0.411
0.476
-0.305
-4.436
1
19
B
953
B
961
-0.401
B_G953:C961_B
11
-3.608
0.481
0.270
-0.306
-3.465
4
24
B
954
B
958
-100.092
B_5MU954:A958_B
12
11.226
3.612
0.654
-1.408
12.401
2
B
955
B
918
-99.514
B_PSU955:OMG918_B
13
23.963
0.515
0.685
-5.746
-10.152
B
937
B
933
-33.362
B_2MA937:U933_B
14
12.780
-6.349
0.435
-4.586
13.350
B
938
B
932
-31.554
B_PSU938:OMU932_B
15
6.786
-3.296
0.909
-1.662
6.470
1
20
B
939
B
931
-3.487
B_A939:U931_B
16
-17.623
-0.698
-0.230
-0.395
4.037
1
19
B
940
B
930
3.664
B_C940:G930_B
17
-13.986
-0.283
-0.170
-0.152
2.538
1
19
B
941
B
929
-0.564
B_C941:G929_B
18
-7.994
0.442
0.060
-0.371
-5.293
1
19
B
942
B
928
4.621
B_G942:C928_B
19
-15.202
0.219
-0.069
-0.101
-21.595
1
19
B
943
B
927
0.342
B_G943:C927_B
20
-19.713
-0.257
-0.201
-0.063
-5.116
1
B
944
B
926
4.641
B_C944:A926_B
21
6.468
4.166
0.474
-1.148
-4.695
1
19
B
910
B
925
-1.794
B_G910:C925_B
22
-5.727
-0.588
-0.266
-0.567
-3.434
1
19
B
911
B
924
0.797
B_C911:G924_B
23
-5.368
0.144
-0.017
-0.299
-0.686
1
19
B
912
B
923
0.170
B_C912:G923_B
24
-2.199
0.457
-0.085
-0.192
7.369
B
913
B
945
167.896
B_A913:A945_B
25
-6.364
-2.024
0.228
-0.687
3.533
4
24
B
914
B
908
-91.348
B_A914:4SU908_B
26
3.232
-4.206
0.618
-2.144
5.599
2
22
B
915
B
948
158.024
B_G915:C948_B
27
7.453
0.261
-0.237
4.143
-23.357
1
B
919
B
956
6.769
B_G919:C956_B
28
-25.571
0.765
0.307
0.211
2.970
32.389
B
B
902
903
3.248
B
B
971
970
3.097
1.808
0.120
-1.735
BB_G902G903:C970C971_BB
1
-3.337
5.996
32.172
-3.407
-0.762
2.994
35.062
B
B
903
904
12.017
B
B
970
969
3.455
7.167
0.176
-1.926
BB_G903G904:C969C970_BB
2
5.070
-8.500
33.979
-4.275
0.470
2.278
29.929
B
B
904
905
25.139
B
B
969
968
3.330
12.543
1.019
-2.113
BB_G904G905:C968C969_BB
3
4.621
-9.261
26.839
-6.443
-1.105
2.933
32.922
B
B
905
906
6.059
B
B
968
967
3.099
3.424
0.068
-1.323
BB_G905U906:A967C968_BB
4
-2.857
5.056
32.627
-2.876
-0.571
2.385
32.909
B
B
906
907
13.253
B
B
967
966
2.805
7.440
-0.416
-1.428
BB_U906A907:U966A967_BB
5
2.401
-4.277
31.992
-3.543
1.064
3.247
29.357
B
B
907
949
3.795
B
B
966
965
3.373
1.921
0.166
-1.912
BB_A907G949:C965U966_BB
6
1.948
-3.849
29.233
-4.192
0.098
3.149
36.048
B
B
949
950
1.076
B
B
965
964
3.162
0.666
-0.533
-2.017
BB_G949C950:G964C965_BB
7
-1.998
3.230
35.989
-3.350
0.588
2.940
38.139
B
B
950
951
16.429
B
B
964
963
3.419
10.604
0.106
-1.321
BB_C950A951:U963G964_BB
8
0.240
-0.372
36.687
-3.352
-0.132
2.891
28.077
B
B
951
952
4.741
B
B
963
962
3.023
2.296
-0.094
-1.501
BB_A951G952:C962U963_BB
9
-2.120
4.379
27.906
-3.585
-0.259
3.098
32.621
B
B
952
953
3.122
B
B
962
961
3.183
1.749
0.621
-2.481
BB_G952G953:C961C962_BB
10
3.703
-6.609
32.370
-4.710
-0.485
3.385
82.347
B
B
953
954
-0.243
B
B
961
958
3.429
-0.320
-2.781
-2.165
BB_G9535MU954:A958C961_BB
11
1.808
-1.373
82.331
-1.636
2.159
3.691
46.448
B
B
954
955
-0.224
B
B
958
918
3.539
-0.176
1.314
-2.022
BB_5MU954PSU955:OMG918A958_BB
12
6.629
-8.431
45.999
-2.548
-1.044
2.731
44.336
B
B
937
938
-1.673
B
B
933
932
2.699
-1.260
0.196
-2.764
BB_2MA937PSU938:OMU932U933_BB
13
-5.504
7.311
43.993
-3.565
-0.685
3.293
47.184
B
B
938
939
12.470
B
B
932
931
3.572
9.894
1.311
-1.685
BB_PSU938A939:U931OMU932_BB
14
5.680
-7.159
45.861
-2.967
-1.143
2.953
34.514
B
B
939
940
10.309
B
B
931
930
3.306
6.086
0.863
-1.726
BB_A939C940:G930U931_BB
15
-0.373
0.632
33.988
-3.819
-1.511
2.315
39.241
B
B
940
941
21.918
B
B
930
929
3.115
14.378
-0.433
-1.765
BB_C940C941:G929G930_BB
16
-3.868
5.896
36.410
-4.110
0.247
2.499
27.237
B
B
941
942
19.909
B
B
929
928
3.377
9.197
-0.041
-2.069
BB_C941G942:C928G929_BB
17
-0.240
0.519
25.663
-6.525
0.031
3.262
31.689
B
B
942
943
11.841
B
B
928
927
3.720
6.423
-0.195
-1.909
BB_G942G943:C927C928_BB
18
0.864
-1.594
31.036
-4.773
0.530
2.546
47.490
B
B
943
944
15.771
B
B
927
926
2.933
12.563
0.339
-1.217
BB_G943C944:A926C927_BB
19
2.068
-2.596
45.847
-2.376
-0.279
2.671
46.654
B
B
944
910
4.801
B
B
926
925
2.851
3.798
-4.297
-0.457
BB_C944G910:C925A926_BB
20
1.553
-1.963
46.483
-0.846
5.536
3.144
38.412
B
B
910
911
2.298
B
B
925
924
3.220
1.511
-0.511
-2.101
BB_G910C911:G924C925_BB
21
-0.456
0.693
38.381
-3.377
0.721
2.860
28.148
B
B
911
912
8.238
B
B
924
923
3.126
3.968
0.648
-2.185
BB_C911C912:G923G924_BB
22
5.565
-11.553
27.322
-5.357
-0.122
3.092
-40.172
B
B
912
913
-20.679
B
B
923
945
2.946
13.886
4.325
0.733
BB_C912A913:A945G923_BB
23
-5.658
-8.425
-37.376
-2.582
5.679
3.226
135.040
B
B
913
914
-4.955
B
B
945
908
3.257
-9.155
-2.691
-0.364
BB_A913A914:4SU908A945_BB
24
4.188
-2.266
134.856
-0.139
1.483
3.722
-72.022
B
B
914
915
-13.589
B
B
908
948
3.334
15.875
1.757
-2.762
BB_A914G915:C9484SU908_BB
25
3.641
3.117
-70.400
1.767
1.628
chem_comp_atom
chem_comp_bond
database_2
struct_conn
struct_site
repository
Initial release
Database references
Database references
Data collection
Database references
Derived calculations
1
0
2013-05-29
1
1
2013-08-21
1
2
2013-10-23
1
3
2024-02-28
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
The same structure with an unmodified tRNA(Gln) transcript containing the UUG anticodon
RCSB
Y
RCSB
2013-04-01
REL
REL
ATP
ADENOSINE-5'-TRIPHOSPHATE
SO4
SULFATE ION
HOH
water
THE CHIRALITY FOR THE DEFINED NUCLEOTIDE-BASE 1RN IS BASED ON THE MODELED COORDINATES
ATP
100
3
ATP
ATP
601
A
SO4
1
4
SO4
SO4
602
A
SO4
2
4
SO4
SO4
603
A
HOH
1
5
HOH
HOH
701
A
HOH
2
5
HOH
HOH
702
A
HOH
3
5
HOH
HOH
703
A
HOH
4
5
HOH
HOH
704
A
HOH
5
5
HOH
HOH
705
A
HOH
6
5
HOH
HOH
706
A
HOH
7
5
HOH
HOH
707
A
HOH
9
5
HOH
HOH
708
A
HOH
13
5
HOH
HOH
709
A
HOH
14
5
HOH
HOH
710
A
HOH
15
5
HOH
HOH
711
A
HOH
16
5
HOH
HOH
712
A
HOH
17
5
HOH
HOH
713
A
HOH
18
5
HOH
HOH
714
A
HOH
19
5
HOH
HOH
715
A
HOH
21
5
HOH
HOH
716
A
HOH
22
5
HOH
HOH
717
A
HOH
23
5
HOH
HOH
718
A
HOH
25
5
HOH
HOH
719
A
HOH
28
5
HOH
HOH
720
A
HOH
29
5
HOH
HOH
721
A
HOH
30
5
HOH
HOH
722
A
HOH
31
5
HOH
HOH
723
A
HOH
33
5
HOH
HOH
724
A
HOH
34
5
HOH
HOH
725
A
HOH
36
5
HOH
HOH
726
A
HOH
39
5
HOH
HOH
727
A
HOH
40
5
HOH
HOH
728
A
HOH
42
5
HOH
HOH
729
A
HOH
44
5
HOH
HOH
730
A
HOH
46
5
HOH
HOH
731
A
HOH
47
5
HOH
HOH
732
A
HOH
48
5
HOH
HOH
733
A
HOH
49
5
HOH
HOH
734
A
HOH
50
5
HOH
HOH
735
A
HOH
51
5
HOH
HOH
736
A
HOH
52
5
HOH
HOH
737
A
HOH
54
5
HOH
HOH
738
A
HOH
57
5
HOH
HOH
739
A
HOH
58
5
HOH
HOH
740
A
HOH
60
5
HOH
HOH
741
A
HOH
62
5
HOH
HOH
742
A
HOH
65
5
HOH
HOH
743
A
HOH
69
5
HOH
HOH
744
A
HOH
70
5
HOH
HOH
745
A
HOH
71
5
HOH
HOH
746
A
HOH
72
5
HOH
HOH
747
A
HOH
73
5
HOH
HOH
748
A
HOH
75
5
HOH
HOH
749
A
HOH
76
5
HOH
HOH
750
A
HOH
79
5
HOH
HOH
751
A
HOH
80
5
HOH
HOH
752
A
HOH
81
5
HOH
HOH
753
A
HOH
83
5
HOH
HOH
754
A
HOH
84
5
HOH
HOH
755
A
HOH
85
5
HOH
HOH
756
A
HOH
86
5
HOH
HOH
757
A
HOH
87
5
HOH
HOH
758
A
HOH
89
5
HOH
HOH
759
A
HOH
90
5
HOH
HOH
760
A
HOH
91
5
HOH
HOH
761
A
HOH
93
5
HOH
HOH
762
A
HOH
94
5
HOH
HOH
763
A
HOH
96
5
HOH
HOH
764
A
HOH
99
5
HOH
HOH
765
A
HOH
100
5
HOH
HOH
766
A
HOH
101
5
HOH
HOH
767
A
HOH
102
5
HOH
HOH
768
A
HOH
103
5
HOH
HOH
769
A
HOH
104
5
HOH
HOH
770
A
HOH
105
5
HOH
HOH
771
A
HOH
106
5
HOH
HOH
772
A
HOH
107
5
HOH
HOH
773
A
HOH
108
5
HOH
HOH
774
A
HOH
110
5
HOH
HOH
775
A
HOH
114
5
HOH
HOH
776
A
HOH
115
5
HOH
HOH
777
A
HOH
117
5
HOH
HOH
778
A
HOH
118
5
HOH
HOH
779
A
HOH
10
5
HOH
HOH
1001
B
HOH
12
5
HOH
HOH
1002
B
HOH
20
5
HOH
HOH
1003
B
HOH
24
5
HOH
HOH
1004
B
HOH
26
5
HOH
HOH
1005
B
HOH
27
5
HOH
HOH
1006
B
HOH
32
5
HOH
HOH
1007
B
HOH
35
5
HOH
HOH
1008
B
HOH
37
5
HOH
HOH
1009
B
HOH
38
5
HOH
HOH
1010
B
HOH
43
5
HOH
HOH
1011
B
HOH
53
5
HOH
HOH
1012
B
HOH
55
5
HOH
HOH
1013
B
HOH
56
5
HOH
HOH
1014
B
HOH
59
5
HOH
HOH
1015
B
HOH
61
5
HOH
HOH
1016
B
HOH
63
5
HOH
HOH
1017
B
HOH
64
5
HOH
HOH
1018
B
HOH
66
5
HOH
HOH
1019
B
HOH
67
5
HOH
HOH
1020
B
HOH
68
5
HOH
HOH
1021
B
HOH
74
5
HOH
HOH
1022
B
HOH
77
5
HOH
HOH
1023
B
HOH
82
5
HOH
HOH
1024
B
HOH
92
5
HOH
HOH
1025
B
HOH
95
5
HOH
HOH
1026
B
HOH
97
5
HOH
HOH
1027
B
HOH
111
5
HOH
HOH
1028
B
HOH
112
5
HOH
HOH
1029
B
HOH
113
5
HOH
HOH
1030
B
HOH
119
5
HOH
HOH
1031
B
n
1
1
A
n
2
2
A
n
3
3
A
n
4
4
A
n
5
5
A
n
6
6
A
PRO
7
n
7
PRO
7
A
THR
8
n
8
THR
8
A
ASN
9
n
9
ASN
9
A
PHE
10
n
10
PHE
10
A
ILE
11
n
11
ILE
11
A
ARG
12
n
12
ARG
12
A
GLN
13
n
13
GLN
13
A
ILE
14
n
14
ILE
14
A
ILE
15
n
15
ILE
15
A
ASP
16
n
16
ASP
16
A
GLU
17
n
17
GLU
17
A
ASP
18
n
18
ASP
18
A
LEU
19
n
19
LEU
19
A
ALA
20
n
20
ALA
20
A
SER
21
n
21
SER
21
A
GLY
22
n
22
GLY
22
A
LYS
23
n
23
LYS
23
A
HIS
24
n
24
HIS
24
A
THR
25
n
25
THR
25
A
THR
26
n
26
THR
26
A
VAL
27
n
27
VAL
27
A
HIS
28
n
28
HIS
28
A
THR
29
n
29
THR
29
A
ARG
30
n
30
ARG
30
A
PHE
31
n
31
PHE
31
A
PRO
32
n
32
PRO
32
A
PRO
33
n
33
PRO
33
A
GLU
34
n
34
GLU
34
A
PRO
35
n
35
PRO
35
A
ASN
36
n
36
ASN
36
A
GLY
37
n
37
GLY
37
A
TYR
38
n
38
TYR
38
A
LEU
39
n
39
LEU
39
A
HIS
40
n
40
HIS
40
A
ILE
41
n
41
ILE
41
A
GLY
42
n
42
GLY
42
A
HIS
43
n
43
HIS
43
A
ALA
44
n
44
ALA
44
A
LYS
45
n
45
LYS
45
A
SER
46
n
46
SER
46
A
ILE
47
n
47
ILE
47
A
CYS
48
n
48
CYS
48
A
LEU
49
n
49
LEU
49
A
ASN
50
n
50
ASN
50
A
PHE
51
n
51
PHE
51
A
GLY
52
n
52
GLY
52
A
ILE
53
n
53
ILE
53
A
ALA
54
n
54
ALA
54
A
GLN
55
n
55
GLN
55
A
ASP
56
n
56
ASP
56
A
TYR
57
n
57
TYR
57
A
LYS
58
n
58
LYS
58
A
GLY
59
n
59
GLY
59
A
GLN
60
n
60
GLN
60
A
CYS
61
n
61
CYS
61
A
ASN
62
n
62
ASN
62
A
LEU
63
n
63
LEU
63
A
ARG
64
n
64
ARG
64
A
PHE
65
n
65
PHE
65
A
ASP
66
n
66
ASP
66
A
ASP
67
n
67
ASP
67
A
THR
68
n
68
THR
68
A
ASN
69
n
69
ASN
69
A
PRO
70
n
70
PRO
70
A
VAL
71
n
71
VAL
71
A
LYS
72
n
72
LYS
72
A
GLU
73
n
73
GLU
73
A
ASP
74
n
74
ASP
74
A
ILE
75
n
75
ILE
75
A
GLU
76
n
76
GLU
76
A
TYR
77
n
77
TYR
77
A
VAL
78
n
78
VAL
78
A
GLU
79
n
79
GLU
79
A
SER
80
n
80
SER
80
A
ILE
81
n
81
ILE
81
A
LYS
82
n
82
LYS
82
A
ASN
83
n
83
ASN
83
A
ASP
84
n
84
ASP
84
A
VAL
85
n
85
VAL
85
A
GLU
86
n
86
GLU
86
A
TRP
87
n
87
TRP
87
A
LEU
88
n
88
LEU
88
A
GLY
89
n
89
GLY
89
A
PHE
90
n
90
PHE
90
A
HIS
91
n
91
HIS
91
A
TRP
92
n
92
TRP
92
A
SER
93
n
93
SER
93
A
GLY
94
n
94
GLY
94
A
ASN
95
n
95
ASN
95
A
VAL
96
n
96
VAL
96
A
ARG
97
n
97
ARG
97
A
TYR
98
n
98
TYR
98
A
SER
99
n
99
SER
99
A
SER
100
n
100
SER
100
A
ASP
101
n
101
ASP
101
A
TYR
102
n
102
TYR
102
A
PHE
103
n
103
PHE
103
A
ASP
104
n
104
ASP
104
A
GLN
105
n
105
GLN
105
A
LEU
106
n
106
LEU
106
A
HIS
107
n
107
HIS
107
A
ALA
108
n
108
ALA
108
A
TYR
109
n
109
TYR
109
A
ALA
110
n
110
ALA
110
A
ILE
111
n
111
ILE
111
A
GLU
112
n
112
GLU
112
A
LEU
113
n
113
LEU
113
A
ILE
114
n
114
ILE
114
A
ASN
115
n
115
ASN
115
A
LYS
116
n
116
LYS
116
A
GLY
117
n
117
GLY
117
A
LEU
118
n
118
LEU
118
A
ALA
119
n
119
ALA
119
A
TYR
120
n
120
TYR
120
A
VAL
121
n
121
VAL
121
A
ASP
122
n
122
ASP
122
A
GLU
123
n
123
GLU
123
A
LEU
124
n
124
LEU
124
A
THR
125
n
125
THR
125
A
PRO
126
n
126
PRO
126
A
GLU
127
n
127
GLU
127
A
GLN
128
n
128
GLN
128
A
ILE
129
n
129
ILE
129
A
ARG
130
n
130
ARG
130
A
GLU
131
n
131
GLU
131
A
TYR
132
n
132
TYR
132
A
ARG
133
n
133
ARG
133
A
GLY
134
n
134
GLY
134
A
THR
135
n
135
THR
135
A
LEU
136
n
136
LEU
136
A
THR
137
n
137
THR
137
A
GLN
138
n
138
GLN
138
A
PRO
139
n
139
PRO
139
A
GLY
140
n
140
GLY
140
A
LYS
141
n
141
LYS
141
A
ASN
142
n
142
ASN
142
A
SER
143
n
143
SER
143
A
PRO
144
n
144
PRO
144
A
TYR
145
n
145
TYR
145
A
ARG
146
n
146
ARG
146
A
ASP
147
n
147
ASP
147
A
ARG
148
n
148
ARG
148
A
SER
149
n
149
SER
149
A
VAL
150
n
150
VAL
150
A
GLU
151
n
151
GLU
151
A
GLU
152
n
152
GLU
152
A
ASN
153
n
153
ASN
153
A
LEU
154
n
154
LEU
154
A
ALA
155
n
155
ALA
155
A
LEU
156
n
156
LEU
156
A
PHE
157
n
157
PHE
157
A
GLU
158
n
158
GLU
158
A
LYS
159
n
159
LYS
159
A
MET
160
n
160
MET
160
A
ARG
161
n
161
ARG
161
A
ALA
162
n
162
ALA
162
A
GLY
163
n
163
GLY
163
A
GLY
164
n
164
GLY
164
A
PHE
165
n
165
PHE
165
A
GLU
166
n
166
GLU
166
A
GLU
167
n
167
GLU
167
A
GLY
168
n
168
GLY
168
A
LYS
169
n
169
LYS
169
A
ALA
170
n
170
ALA
170
A
CYS
171
n
171
CYS
171
A
LEU
172
n
172
LEU
172
A
ARG
173
n
173
ARG
173
A
ALA
174
n
174
ALA
174
A
LYS
175
n
175
LYS
175
A
ILE
176
n
176
ILE
176
A
ASP
177
n
177
ASP
177
A
MET
178
n
178
MET
178
A
ALA
179
n
179
ALA
179
A
SER
180
n
180
SER
180
A
PRO
181
n
181
PRO
181
A
PHE
182
n
182
PHE
182
A
ILE
183
n
183
ILE
183
A
VAL
184
n
184
VAL
184
A
MET
185
n
185
MET
185
A
ARG
186
n
186
ARG
186
A
ASP
187
n
187
ASP
187
A
PRO
188
n
188
PRO
188
A
VAL
189
n
189
VAL
189
A
LEU
190
n
190
LEU
190
A
TYR
191
n
191
TYR
191
A
ARG
192
n
192
ARG
192
A
ILE
193
n
193
ILE
193
A
LYS
194
n
194
LYS
194
A
PHE
195
n
195
PHE
195
A
ALA
196
n
196
ALA
196
A
GLU
197
n
197
GLU
197
A
HIS
198
n
198
HIS
198
A
HIS
199
n
199
HIS
199
A
GLN
200
n
200
GLN
200
A
THR
201
n
201
THR
201
A
GLY
202
n
202
GLY
202
A
ASN
203
n
203
ASN
203
A
LYS
204
n
204
LYS
204
A
TRP
205
n
205
TRP
205
A
CYS
206
n
206
CYS
206
A
ILE
207
n
207
ILE
207
A
TYR
208
n
208
TYR
208
A
PRO
209
n
209
PRO
209
A
MET
210
n
210
MET
210
A
TYR
211
n
211
TYR
211
A
ASP
212
n
212
ASP
212
A
PHE
213
n
213
PHE
213
A
THR
214
n
214
THR
214
A
HIS
215
n
215
HIS
215
A
CYS
216
n
216
CYS
216
A
ILE
217
n
217
ILE
217
A
SER
218
n
218
SER
218
A
ASP
219
n
219
ASP
219
A
ALA
220
n
220
ALA
220
A
LEU
221
n
221
LEU
221
A
GLU
222
n
222
GLU
222
A
GLY
223
n
223
GLY
223
A
ILE
224
n
224
ILE
224
A
THR
225
n
225
THR
225
A
HIS
226
n
226
HIS
226
A
SER
227
n
227
SER
227
A
LEU
228
n
228
LEU
228
A
CYS
229
n
229
CYS
229
A
THR
230
n
230
THR
230
A
LEU
231
n
231
LEU
231
A
GLU
232
n
232
GLU
232
A
PHE
233
n
233
PHE
233
A
GLN
234
n
234
GLN
234
A
ASP
235
n
235
ASP
235
A
ASN
236
n
236
ASN
236
A
ARG
237
n
237
ARG
237
A
ARG
238
n
238
ARG
238
A
LEU
239
n
239
LEU
239
A
TYR
240
n
240
TYR
240
A
ASP
241
n
241
ASP
241
A
TRP
242
n
242
TRP
242
A
VAL
243
n
243
VAL
243
A
LEU
244
n
244
LEU
244
A
ASP
245
n
245
ASP
245
A
ASN
246
n
246
ASN
246
A
ILE
247
n
247
ILE
247
A
THR
248
n
248
THR
248
A
ILE
249
n
249
ILE
249
A
PRO
250
n
250
PRO
250
A
VAL
251
n
251
VAL
251
A
HIS
252
n
252
HIS
252
A
PRO
253
n
253
PRO
253
A
ARG
254
n
254
ARG
254
A
GLN
255
n
255
GLN
255
A
TYR
256
n
256
TYR
256
A
GLU
257
n
257
GLU
257
A
PHE
258
n
258
PHE
258
A
SER
259
n
259
SER
259
A
ARG
260
n
260
ARG
260
A
LEU
261
n
261
LEU
261
A
ASN
262
n
262
ASN
262
A
LEU
263
n
263
LEU
263
A
GLU
264
n
264
GLU
264
A
TYR
265
n
265
TYR
265
A
THR
266
n
266
THR
266
A
VAL
267
n
267
VAL
267
A
MET
268
n
268
MET
268
A
SER
269
n
269
SER
269
A
LYS
270
n
270
LYS
270
A
ARG
271
n
271
ARG
271
A
LYS
272
n
272
LYS
272
A
LEU
273
n
273
LEU
273
A
ASN
274
n
274
ASN
274
A
LEU
275
n
275
LEU
275
A
LEU
276
n
276
LEU
276
A
VAL
277
n
277
VAL
277
A
THR
278
n
278
THR
278
A
ASP
279
n
279
ASP
279
A
LYS
280
n
280
LYS
280
A
HIS
281
n
281
HIS
281
A
VAL
282
n
282
VAL
282
A
GLU
283
n
283
GLU
283
A
GLY
284
n
284
GLY
284
A
TRP
285
n
285
TRP
285
A
ASP
286
n
286
ASP
286
A
ASP
287
n
287
ASP
287
A
PRO
288
n
288
PRO
288
A
ARG
289
n
289
ARG
289
A
MET
290
n
290
MET
290
A
PRO
291
n
291
PRO
291
A
THR
292
n
292
THR
292
A
ILE
293
n
293
ILE
293
A
SER
294
n
294
SER
294
A
GLY
295
n
295
GLY
295
A
LEU
296
n
296
LEU
296
A
ARG
297
n
297
ARG
297
A
ARG
298
n
298
ARG
298
A
ARG
299
n
299
ARG
299
A
GLY
300
n
300
GLY
300
A
TYR
301
n
301
TYR
301
A
THR
302
n
302
THR
302
A
ALA
303
n
303
ALA
303
A
ALA
304
n
304
ALA
304
A
SER
305
n
305
SER
305
A
ILE
306
n
306
ILE
306
A
ARG
307
n
307
ARG
307
A
GLU
308
n
308
GLU
308
A
PHE
309
n
309
PHE
309
A
CYS
310
n
310
CYS
310
A
LYS
311
n
311
LYS
311
A
ARG
312
n
312
ARG
312
A
ILE
313
n
313
ILE
313
A
GLY
314
n
314
GLY
314
A
VAL
315
n
315
VAL
315
A
THR
316
n
316
THR
316
A
LYS
317
n
317
LYS
317
A
GLN
318
n
318
GLN
318
A
ASP
319
n
319
ASP
319
A
ASN
320
n
320
ASN
320
A
THR
321
n
321
THR
321
A
ILE
322
n
322
ILE
322
A
GLU
323
n
323
GLU
323
A
MET
324
n
324
MET
324
A
ALA
325
n
325
ALA
325
A
SER
326
n
326
SER
326
A
LEU
327
n
327
LEU
327
A
GLU
328
n
328
GLU
328
A
SER
329
n
329
SER
329
A
CYS
330
n
330
CYS
330
A
ILE
331
n
331
ILE
331
A
ARG
332
n
332
ARG
332
A
GLU
333
n
333
GLU
333
A
ASP
334
n
334
ASP
334
A
LEU
335
n
335
LEU
335
A
ASN
336
n
336
ASN
336
A
GLU
337
n
337
GLU
337
A
ASN
338
n
338
ASN
338
A
ALA
339
n
339
ALA
339
A
PRO
340
n
340
PRO
340
A
ARG
341
n
341
ARG
341
A
ALA
342
n
342
ALA
342
A
MET
343
n
343
MET
343
A
ALA
344
n
344
ALA
344
A
VAL
345
n
345
VAL
345
A
ILE
346
n
346
ILE
346
A
ASP
347
n
347
ASP
347
A
PRO
348
n
348
PRO
348
A
VAL
349
n
349
VAL
349
A
LYS
350
n
350
LYS
350
A
LEU
351
n
351
LEU
351
A
VAL
352
n
352
VAL
352
A
ILE
353
n
353
ILE
353
A
GLU
354
n
354
GLU
354
A
ASN
355
n
355
ASN
355
A
TYR
356
n
356
TYR
356
A
ALA
357
n
357
GLN
357
A
GLY
358
n
358
GLY
358
A
GLU
359
n
359
GLU
359
A
GLY
360
n
360
GLY
360
A
GLU
361
n
361
GLU
361
A
MET
362
n
362
MET
362
A
VAL
363
n
363
VAL
363
A
THR
364
n
364
THR
364
A
MET
365
n
365
MET
365
A
PRO
366
n
366
PRO
366
A
ASN
367
n
367
ASN
367
A
HIS
368
n
368
HIS
368
A
PRO
369
n
369
PRO
369
A
ASN
370
n
370
ASN
370
A
LYS
371
n
371
LYS
371
A
PRO
372
n
372
PRO
372
A
GLU
373
n
373
GLU
373
A
MET
374
n
374
MET
374
A
GLY
375
n
375
GLY
375
A
SER
376
n
376
SER
376
A
ARG
377
n
377
ARG
377
A
GLN
378
n
378
GLN
378
A
VAL
379
n
379
VAL
379
A
PRO
380
n
380
PRO
380
A
PHE
381
n
381
PHE
381
A
SER
382
n
382
SER
382
A
GLY
383
n
383
GLY
383
A
GLU
384
n
384
GLU
384
A
ILE
385
n
385
ILE
385
A
TRP
386
n
386
TRP
386
A
ILE
387
n
387
ILE
387
A
ASP
388
n
388
ASP
388
A
ARG
389
n
389
ARG
389
A
ALA
390
n
390
ALA
390
A
ASP
391
n
391
ASP
391
A
PHE
392
n
392
PHE
392
A
ARG
393
n
393
ARG
393
A
GLU
394
n
394
GLU
394
A
ALA
395
n
395
GLU
395
A
ALA
396
n
396
ALA
396
A
ASN
397
n
397
ASN
397
A
ALA
398
n
398
LYS
398
A
GLN
399
n
399
GLN
399
A
TYR
400
n
400
TYR
400
A
ALA
401
n
401
LYS
401
A
ARG
402
n
402
ARG
402
A
LEU
403
n
403
LEU
403
A
ALA
404
n
404
VAL
404
A
ALA
405
n
405
LEU
405
A
GLY
406
n
406
GLY
406
A
ALA
407
n
407
LYS
407
A
GLU
408
n
408
GLU
408
A
VAL
409
n
409
VAL
409
A
ARG
410
n
410
ARG
410
A
LEU
411
n
411
LEU
411
A
ARG
412
n
412
ARG
412
A
ASN
413
n
413
ASN
413
A
ALA
414
n
414
ALA
414
A
TYR
415
n
415
TYR
415
A
VAL
416
n
416
VAL
416
A
ILE
417
n
417
ILE
417
A
LYS
418
n
418
LYS
418
A
ALA
419
n
419
ALA
419
A
GLU
420
n
420
GLU
420
A
ARG
421
n
421
ARG
421
A
VAL
422
n
422
VAL
422
A
ALA
423
n
423
GLU
423
A
LYS
424
n
424
LYS
424
A
ASP
425
n
425
ASP
425
A
ALA
426
n
426
ALA
426
A
GLU
427
n
427
GLU
427
A
GLY
428
n
428
GLY
428
A
ASN
429
n
429
ASN
429
A
ILE
430
n
430
ILE
430
A
THR
431
n
431
THR
431
A
THR
432
n
432
THR
432
A
ILE
433
n
433
ILE
433
A
PHE
434
n
434
PHE
434
A
CYS
435
n
435
CYS
435
A
THR
436
n
436
THR
436
A
TYR
437
n
437
TYR
437
A
ASP
438
n
438
ASP
438
A
ALA
439
n
439
ALA
439
A
ALA
440
n
440
ASP
440
A
THR
441
n
441
THR
441
A
LEU
442
n
442
LEU
442
A
ALA
443
n
443
SER
443
A
ALA
444
n
444
LYS
444
A
ALA
445
n
445
ASP
445
A
PRO
446
n
446
PRO
446
A
ALA
447
n
447
ALA
447
A
ALA
448
n
448
ASP
448
A
GLY
449
n
449
GLY
449
A
ARG
450
n
450
ARG
450
A
LYS
451
n
451
LYS
451
A
VAL
452
n
452
VAL
452
A
ALA
453
n
453
LYS
453
A
GLY
454
n
454
GLY
454
A
VAL
455
n
455
VAL
455
A
ILE
456
n
456
ILE
456
A
HIS
457
n
457
HIS
457
A
TRP
458
n
458
TRP
458
A
VAL
459
n
459
VAL
459
A
SER
460
n
460
SER
460
A
ALA
461
n
461
ALA
461
A
ALA
462
n
462
ALA
462
A
ALA
463
n
463
HIS
463
A
ALA
464
n
464
ALA
464
A
LEU
465
n
465
LEU
465
A
PRO
466
n
466
PRO
466
A
VAL
467
n
467
VAL
467
A
GLU
468
n
468
GLU
468
A
ILE
469
n
469
ILE
469
A
ARG
470
n
470
ARG
470
A
LEU
471
n
471
LEU
471
A
TYR
472
n
472
TYR
472
A
ASP
473
n
473
ASP
473
A
ARG
474
n
474
ARG
474
A
LEU
475
n
475
LEU
475
A
PHE
476
n
476
PHE
476
A
SER
477
n
477
SER
477
A
VAL
478
n
478
VAL
478
A
PRO
479
n
479
PRO
479
A
ASN
480
n
480
ASN
480
A
PRO
481
n
481
PRO
481
A
GLY
482
n
482
GLY
482
A
ALA
483
n
483
ALA
483
A
ALA
484
n
484
ALA
484
A
ASP
485
n
485
ASP
485
A
ASP
486
n
486
ASP
486
A
PHE
487
n
487
PHE
487
A
LEU
488
n
488
LEU
488
A
SER
489
n
489
SER
489
A
VAL
490
n
490
VAL
490
A
ILE
491
n
491
ILE
491
A
ASN
492
n
492
ASN
492
A
PRO
493
n
493
PRO
493
A
GLU
494
n
494
GLU
494
A
SER
495
n
495
SER
495
A
LEU
496
n
496
LEU
496
A
VAL
497
n
497
VAL
497
A
ILE
498
n
498
ILE
498
A
LYS
499
n
499
LYS
499
A
GLN
500
n
500
GLN
500
A
GLY
501
n
501
GLY
501
A
PHE
502
n
502
PHE
502
A
ALA
503
n
503
ALA
503
A
GLU
504
n
504
GLU
504
A
PRO
505
n
505
PRO
505
A
SER
506
n
506
SER
506
A
LEU
507
n
507
LEU
507
A
LYS
508
n
508
LYS
508
A
ASP
509
n
509
ASP
509
A
ALA
510
n
510
ALA
510
A
VAL
511
n
511
VAL
511
A
ALA
512
n
512
ALA
512
A
GLY
513
n
513
GLY
513
A
LYS
514
n
514
LYS
514
A
ALA
515
n
515
ALA
515
A
PHE
516
n
516
PHE
516
A
GLN
517
n
517
GLN
517
A
PHE
518
n
518
PHE
518
A
GLU
519
n
519
GLU
519
A
ARG
520
n
520
ARG
520
A
GLU
521
n
521
GLU
521
A
GLY
522
n
522
GLY
522
A
TYR
523
n
523
TYR
523
A
PHE
524
n
524
PHE
524
A
CYS
525
n
525
CYS
525
A
LEU
526
n
526
LEU
526
A
ALA
527
n
527
ASP
527
A
SER
528
n
528
SER
528
A
ARG
529
n
529
ARG
529
A
HIS
530
n
530
HIS
530
A
SER
531
n
531
SER
531
A
THR
532
n
532
THR
532
A
ALA
533
n
533
ALA
533
A
GLU
534
n
534
GLU
534
A
LYS
535
n
535
LYS
535
A
PRO
536
n
536
PRO
536
A
VAL
537
n
537
VAL
537
A
PHE
538
n
538
PHE
538
A
ASN
539
n
539
ASN
539
A
ARG
540
n
540
ARG
540
A
THR
541
n
541
THR
541
A
VAL
542
n
542
VAL
542
A
GLY
543
n
543
GLY
543
A
LEU
544
n
544
LEU
544
A
ARG
545
n
545
ARG
545
A
ASP
546
n
546
ASP
546
A
THR
547
n
547
THR
547
A
TRP
548
n
548
TRP
548
A
n
549
549
A
n
550
550
A
n
551
551
A
n
552
552
A
n
553
553
A
n
1
901
B
G
902
n
2
G
902
B
G
903
n
3
G
903
B
G
904
n
4
G
904
B
G
905
n
5
G
905
B
U
906
n
6
U
906
B
A
907
n
7
A
907
B
4SU
908
n
8
4SU
908
B
C
909
n
9
C
909
B
G
910
n
10
G
910
B
C
911
n
11
C
911
B
C
912
n
12
C
912
B
A
913
n
13
A
913
B
A
914
n
14
A
914
B
G
915
n
15
G
915
B
C
916
n
16
C
916
B
OMG
918
n
17
OMG
918
B
G
919
n
18
G
919
B
H2U
920
n
19
H2U
920
B
A
921
n
20
A
921
B
A
922
n
21
A
922
B
G
923
n
22
G
923
B
G
924
n
23
G
924
B
C
925
n
24
C
925
B
A
926
n
25
A
926
B
C
927
n
26
C
927
B
C
928
n
27
C
928
B
G
929
n
28
G
929
B
G
930
n
29
G
930
B
U
931
n
30
U
931
B
OMU
932
n
31
OMU
932
B
U
933
n
32
U
933
B
1RN
934
n
33
1RN
934
B
U
935
n
34
U
935
B
G
936
n
35
G
936
B
2MA
937
n
36
2MA
937
B
PSU
938
n
37
PSU
938
B
A
939
n
38
A
939
B
C
940
n
39
C
940
B
C
941
n
40
C
941
B
G
942
n
41
G
942
B
G
943
n
42
G
943
B
C
944
n
43
C
944
B
A
945
n
44
A
945
B
n
45
946
B
n
46
947
B
C
948
n
47
C
948
B
G
949
n
48
G
949
B
C
950
n
49
C
950
B
A
951
n
50
A
951
B
G
952
n
51
G
952
B
G
953
n
52
G
953
B
5MU
954
n
53
5MU
954
B
PSU
955
n
54
PSU
955
B
C
956
n
55
C
956
B
G
957
n
56
G
957
B
A
958
n
57
A
958
B
A
959
n
58
A
959
B
U
960
n
59
U
960
B
C
961
n
60
C
961
B
C
962
n
61
C
962
B
U
963
n
62
U
963
B
G
964
n
63
G
964
B
C
965
n
64
C
965
B
U
966
n
65
U
966
B
A
967
n
66
A
967
B
C
968
n
67
C
968
B
C
969
n
68
C
969
B
C
970
n
69
C
970
B
C
971
n
70
C
971
B
A
972
n
71
A
972
B
G
973
n
72
G
973
B
C
974
n
73
C
974
B
C
975
n
74
C
975
B
A
976
n
75
A
976
B
author_and_software_defined_assembly
PISA
2
dimeric
10510
-76
30730
B
4SU
908
4-THIOURIDINE-5'-MONOPHOSPHATE
B
4SU
8
U
B
OMG
918
O2'-METHYLGUANOSINE-5'-MONOPHOSPHATE
B
OMG
17
G
B
H2U
920
5,6-DIHYDROURIDINE-5'-MONOPHOSPHATE
B
H2U
19
U
B
OMU
932
O2'-METHYLURIDINE 5'-MONOPHOSPHATE
B
OMU
31
U
B
1RN
934
B
1RN
33
U
B
2MA
937
2-METHYLADENOSINE-5'-MONOPHOSPHATE
B
2MA
36
A
B
PSU
938
PSEUDOURIDINE-5'-MONOPHOSPHATE
B
PSU
37
U
B
5MU
954
5-METHYLURIDINE 5'-MONOPHOSPHATE
B
5MU
53
U
B
PSU
955
PSEUDOURIDINE-5'-MONOPHOSPHATE
B
PSU
54
U
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
PHE
31
A
N
PHE
31
A
O
ASN
62
A
O
ASN
62
A
N
LEU
63
A
N
LEU
63
A
O
ARG
97
A
O
ARG
97
A
N
TYR
120
A
N
TYR
120
A
O
ARG
173
A
O
ARG
173
A
N
LEU
172
A
N
LEU
172
A
O
LEU
190
A
O
LEU
190
A
N
ARG
192
A
N
ARG
192
A
O
TYR
208
A
O
TYR
208
A
N
SER
227
A
N
SER
227
A
O
ARG
254
A
O
ARG
254
A
N
ALA
342
A
N
ALA
342
A
O
GLN
517
A
O
GLN
517
A
N
PHE
516
A
N
PHE
516
A
O
PHE
524
A
O
PHE
524
A
N
CYS
525
A
N
CYS
525
A
O
ASN
539
A
O
ASN
539
A
O
PHE
538
A
O
PHE
538
A
N
ARG
470
A
N
ARG
470
A
N
ILE
469
A
N
ILE
469
A
O
LYS
499
A
O
LYS
499
A
O
PHE
502
A
O
PHE
502
A
N
VAL
345
A
N
VAL
345
A
N
VAL
349
A
N
VAL
349
A
O
ILE
387
A
O
ILE
387
A
N
VAL
363
A
N
VAL
363
A
O
VAL
379
A
O
VAL
379
A
N
ARG
393
A
N
ARG
393
A
O
LEU
403
A
O
LEU
403
A
N
ARG
410
A
N
ARG
410
A
O
ILE
456
A
O
ILE
456
A
N
GLU
423
A
N
GLU
423
A
O
THR
431
A
O
THR
431
1
A
HOH
772
F
HOH
1
A
CG
GLN
357
A
CG
GLN
357
1
Y
1
A
CD
GLN
357
A
CD
GLN
357
1
Y
1
A
OE1
GLN
357
A
OE1
GLN
357
1
Y
1
A
NE2
GLN
357
A
NE2
GLN
357
1
Y
1
A
CG
GLU
395
A
CG
GLU
395
1
Y
1
A
CD
GLU
395
A
CD
GLU
395
1
Y
1
A
OE1
GLU
395
A
OE1
GLU
395
1
Y
1
A
OE2
GLU
395
A
OE2
GLU
395
1
Y
1
A
CG
LYS
398
A
CG
LYS
398
1
Y
1
A
CD
LYS
398
A
CD
LYS
398
1
Y
1
A
CE
LYS
398
A
CE
LYS
398
1
Y
1
A
NZ
LYS
398
A
NZ
LYS
398
1
Y
1
A
CG
LYS
401
A
CG
LYS
401
1
Y
1
A
CD
LYS
401
A
CD
LYS
401
1
Y
1
A
CE
LYS
401
A
CE
LYS
401
1
Y
1
A
NZ
LYS
401
A
NZ
LYS
401
1
Y
1
A
CG1
VAL
404
A
CG1
VAL
404
1
Y
1
A
CG2
VAL
404
A
CG2
VAL
404
1
Y
1
A
CG
LEU
405
A
CG
LEU
405
1
Y
1
A
CD1
LEU
405
A
CD1
LEU
405
1
Y
1
A
CD2
LEU
405
A
CD2
LEU
405
1
Y
1
A
CG
LYS
407
A
CG
LYS
407
1
Y
1
A
CD
LYS
407
A
CD
LYS
407
1
Y
1
A
CE
LYS
407
A
CE
LYS
407
1
Y
1
A
NZ
LYS
407
A
NZ
LYS
407
1
Y
1
A
CG
GLU
423
A
CG
GLU
423
1
Y
1
A
CD
GLU
423
A
CD
GLU
423
1
Y
1
A
OE1
GLU
423
A
OE1
GLU
423
1
Y
1
A
OE2
GLU
423
A
OE2
GLU
423
1
Y
1
A
CG
ASP
440
A
CG
ASP
440
1
Y
1
A
OD1
ASP
440
A
OD1
ASP
440
1
Y
1
A
OD2
ASP
440
A
OD2
ASP
440
1
Y
1
A
OG
SER
443
A
OG
SER
443
1
Y
1
A
CG
LYS
444
A
CG
LYS
444
1
Y
1
A
CD
LYS
444
A
CD
LYS
444
1
Y
1
A
CE
LYS
444
A
CE
LYS
444
1
Y
1
A
NZ
LYS
444
A
NZ
LYS
444
1
Y
1
A
CG
ASP
445
A
CG
ASP
445
1
Y
1
A
OD1
ASP
445
A
OD1
ASP
445
1
Y
1
A
OD2
ASP
445
A
OD2
ASP
445
1
Y
1
A
CG
ASP
448
A
CG
ASP
448
1
Y
1
A
OD1
ASP
448
A
OD1
ASP
448
1
Y
1
A
OD2
ASP
448
A
OD2
ASP
448
1
Y
1
A
CG
LYS
453
A
CG
LYS
453
1
Y
1
A
CD
LYS
453
A
CD
LYS
453
1
Y
1
A
CE
LYS
453
A
CE
LYS
453
1
Y
1
A
NZ
LYS
453
A
NZ
LYS
453
1
Y
1
A
CG
HIS
463
A
CG
HIS
463
1
Y
1
A
ND1
HIS
463
A
ND1
HIS
463
1
Y
1
A
CD2
HIS
463
A
CD2
HIS
463
1
Y
1
A
CE1
HIS
463
A
CE1
HIS
463
1
Y
1
A
NE2
HIS
463
A
NE2
HIS
463
1
Y
1
A
CG
ASP
527
A
CG
ASP
527
1
Y
1
A
OD1
ASP
527
A
OD1
ASP
527
1
Y
1
A
OD2
ASP
527
A
OD2
ASP
527
1
Y
1
A
SER
1
A
SER
1
1
Y
1
A
GLU
2
A
GLU
2
1
Y
1
A
ALA
3
A
ALA
3
1
Y
1
A
GLU
4
A
GLU
4
1
Y
1
A
ALA
5
A
ALA
5
1
Y
1
A
ARG
6
A
ARG
6
1
Y
1
A
ALA
549
A
ALA
549
1
Y
1
A
LYS
550
A
LYS
550
1
Y
1
A
VAL
551
A
VAL
551
1
Y
1
A
GLY
552
A
GLY
552
1
Y
1
A
GLU
553
A
GLU
553
1
Y
1
B
U
901
B
U
1
1
Y
1
B
U
946
B
U
45
1
Y
1
B
U
947
B
U
46
1
Y
1
B
G
919
0.053
SIDE CHAIN
1
9.09
1.50
119.30
128.39
A
A
A
C
N
CA
HIS
PRO
PRO
368
369
369
Y
1
10.93
1.60
113.70
124.63
B
B
B
C2'
C3'
O3'
U
U
U
960
960
960
N
1
A
PRO
32
-114.14
75.69
1
A
ILE
176
-120.14
-103.87
1
A
THR
316
-140.21
-159.43
1
A
GLU
361
-164.82
-165.66
1
A
HIS
368
-173.20
98.22
1
A
PRO
369
-36.68
-26.80
1
A
SER
382
-101.53
-163.74
1
A
ARG
402
-75.70
-134.25
1
A
ALA
414
-155.83
-150.77
1
A
GLU
420
-132.32
-57.88
1
A
ASP
440
-99.18
51.66
1
A
THR
441
-114.86
-73.40
1
A
LEU
442
24.24
-99.60
1
A
LYS
444
176.09
-172.14
1
A
ASP
445
59.91
129.65
1
A
PRO
446
-88.80
38.59
1
A
ALA
447
62.97
-97.19
1
A
ARG
450
-59.68
104.84
1
A
ALA
462
-57.35
-75.14
1
A
ALA
464
32.77
102.11
1
A
PRO
466
-66.14
87.17
1
A
ASN
480
-119.76
68.74
1
A
LEU
507
-68.02
2.51
1
A
GLU
521
-125.78
-63.26
1
A
ARG
545
-57.38
107.34
1
A
THR
547
169.70
109.39
0.263
0.234
0.237
2.5
47.6
4103
43622
43186
random
1
0.0
FOURIER SYNTHESIS
Engh & Huber
0.48
0.41
5.0
0.62
0.52
2.5
47.6
110
6022
41
1543
4328
0.0067
1.389
59.6
2.5
47.6
4JYZ
44522
44106
1.0
1.0
0.076
1
11.9
6.74
99.0
0.467
2.5
2.58
3.0
1
6.6
97.0
data collection
StructureStudio
refinement
CNS
data reduction
d*TREK
data scaling
d*TREK
phasing
CNS
Crystal structure of E. coli glutaminyl-tRNA synthetase bound to ATP and native tRNA(Gln) containing the cmnm5s2U34 anticodon wobble base
1
N
N
2
N
N
3
N
N
4
N
N
4
N
N
5
N
N
5
N
N
A
ASN
9
A
ASN
9
HELX_P
A
SER
21
A
SER
21
1
1
13
A
HIS
40
A
HIS
40
HELX_P
A
TYR
57
A
TYR
57
1
2
18
A
ASN
69
A
ASN
69
HELX_P
A
GLU
73
A
GLU
73
5
3
5
A
ASP
74
A
ASP
74
HELX_P
A
LEU
88
A
LEU
88
1
4
15
A
TYR
102
A
TYR
102
HELX_P
A
LYS
116
A
LYS
116
1
5
15
A
THR
125
A
THR
125
HELX_P
A
GLY
134
A
GLY
134
1
6
10
A
SER
149
A
SER
149
HELX_P
A
GLY
163
A
GLY
163
1
7
15
A
PHE
182
A
PHE
182
HELX_P
A
ARG
186
A
ARG
186
5
8
5
A
MET
210
A
MET
210
HELX_P
A
GLY
223
A
GLY
223
1
9
14
A
PHE
233
A
PHE
233
HELX_P
A
ILE
247
A
ILE
247
1
10
15
A
SER
269
A
SER
269
HELX_P
A
ASP
279
A
ASP
279
1
11
11
A
THR
292
A
THR
292
HELX_P
A
GLY
300
A
GLY
300
1
12
9
A
THR
302
A
THR
302
HELX_P
A
GLY
314
A
GLY
314
1
13
13
A
GLU
323
A
GLU
323
HELX_P
A
GLU
337
A
GLU
337
1
14
15
A
LYS
371
A
LYS
371
HELX_P
A
MET
374
A
MET
374
5
15
4
A
ASN
480
A
ASN
480
HELX_P
A
ALA
484
A
ALA
484
5
16
5
A
ASP
486
A
ASP
486
HELX_P
A
ILE
491
A
ILE
491
5
17
6
A
PRO
505
A
PRO
505
HELX_P
A
ALA
510
A
ALA
510
5
18
6
covale
1.601
both
B
A
907
B
O3'
A
7
1_555
B
4SU
908
B
P
4SU
8
1_555
covale
1.607
both
B
4SU
908
B
O3'
4SU
8
1_555
B
C
909
B
P
C
9
1_555
covale
1.604
both
B
C
916
B
O3'
C
16
1_555
B
OMG
918
B
P
OMG
17
1_555
covale
1.611
both
B
OMG
918
B
O3'
OMG
17
1_555
B
G
919
B
P
G
18
1_555
covale
1.616
both
B
G
919
B
O3'
G
18
1_555
B
H2U
920
B
P
H2U
19
1_555
covale
1.613
both
B
H2U
920
B
O3'
H2U
19
1_555
B
A
921
B
P
A
20
1_555
covale
1.602
both
B
U
931
B
O3'
U
30
1_555
B
OMU
932
B
P
OMU
31
1_555
covale
1.608
both
B
OMU
932
B
O3'
OMU
31
1_555
B
U
933
B
P
U
32
1_555
covale
1.611
both
B
U
933
B
O3'
U
32
1_555
B
1RN
934
B
P
1RN
33
1_555
covale
1.599
one
B
1RN
934
B
O3'
1RN
33
1_555
B
U
935
B
P
U
34
1_555
covale
1.595
both
B
G
936
B
O3'
G
35
1_555
B
2MA
937
B
P
2MA
36
1_555
covale
1.605
both
B
2MA
937
B
O3'
2MA
36
1_555
B
PSU
938
B
P
PSU
37
1_555
covale
1.605
both
B
PSU
938
B
O3'
PSU
37
1_555
B
A
939
B
P
A
38
1_555
covale
1.608
both
B
G
953
B
O3'
G
52
1_555
B
5MU
954
B
P
5MU
53
1_555
covale
1.611
both
B
5MU
954
B
O3'
5MU
53
1_555
B
PSU
955
B
P
PSU
54
1_555
covale
1.611
both
B
PSU
955
B
O3'
PSU
54
1_555
B
C
956
B
P
C
55
1_555
hydrog
WATSON-CRICK
B
G
902
B
N1
G
2
1_555
B
C
971
B
N3
C
70
1_555
hydrog
WATSON-CRICK
B
G
902
B
N2
G
2
1_555
B
C
971
B
O2
C
70
1_555
hydrog
WATSON-CRICK
B
G
902
B
O6
G
2
1_555
B
C
971
B
N4
C
70
1_555
hydrog
WATSON-CRICK
B
G
903
B
N1
G
3
1_555
B
C
970
B
N3
C
69
1_555
hydrog
WATSON-CRICK
B
G
903
B
N2
G
3
1_555
B
C
970
B
O2
C
69
1_555
hydrog
WATSON-CRICK
B
G
903
B
O6
G
3
1_555
B
C
970
B
N4
C
69
1_555
hydrog
WATSON-CRICK
B
G
904
B
N1
G
4
1_555
B
C
969
B
N3
C
68
1_555
hydrog
WATSON-CRICK
B
G
904
B
N2
G
4
1_555
B
C
969
B
O2
C
68
1_555
hydrog
WATSON-CRICK
B
G
904
B
O6
G
4
1_555
B
C
969
B
N4
C
68
1_555
hydrog
WATSON-CRICK
B
G
905
B
N1
G
5
1_555
B
C
968
B
N3
C
67
1_555
hydrog
WATSON-CRICK
B
G
905
B
N2
G
5
1_555
B
C
968
B
O2
C
67
1_555
hydrog
WATSON-CRICK
B
G
905
B
O6
G
5
1_555
B
C
968
B
N4
C
67
1_555
hydrog
WATSON-CRICK
B
U
906
B
N3
U
6
1_555
B
A
967
B
N1
A
66
1_555
hydrog
WATSON-CRICK
B
U
906
B
O4
U
6
1_555
B
A
967
B
N6
A
66
1_555
hydrog
WATSON-CRICK
B
A
907
B
N1
A
7
1_555
B
U
966
B
N3
U
65
1_555
hydrog
WATSON-CRICK
B
A
907
B
N6
A
7
1_555
B
U
966
B
O4
U
65
1_555
hydrog
REVERSED HOOGSTEEN
B
4SU
908
B
N3
4SU
8
1_555
B
A
914
B
N7
A
14
1_555
hydrog
REVERSED HOOGSTEEN
B
4SU
908
B
O2
4SU
8
1_555
B
A
914
B
N6
A
14
1_555
hydrog
C-G PAIR
B
C
909
B
N4
C
9
1_555
B
G
923
B
O6
G
22
1_555
hydrog
WATSON-CRICK
B
G
910
B
N1
G
10
1_555
B
C
925
B
N3
C
24
1_555
hydrog
WATSON-CRICK
B
G
910
B
N2
G
10
1_555
B
C
925
B
O2
C
24
1_555
hydrog
WATSON-CRICK
B
G
910
B
O6
G
10
1_555
B
C
925
B
N4
C
24
1_555
hydrog
WATSON-CRICK
B
C
911
B
N3
C
11
1_555
B
G
924
B
N1
G
23
1_555
hydrog
WATSON-CRICK
B
C
911
B
N4
C
11
1_555
B
G
924
B
O6
G
23
1_555
hydrog
WATSON-CRICK
B
C
911
B
O2
C
11
1_555
B
G
924
B
N2
G
23
1_555
hydrog
WATSON-CRICK
B
C
912
B
N3
C
12
1_555
B
G
923
B
N1
G
22
1_555
hydrog
WATSON-CRICK
B
C
912
B
N4
C
12
1_555
B
G
923
B
O6
G
22
1_555
hydrog
WATSON-CRICK
B
C
912
B
O2
C
12
1_555
B
G
923
B
N2
G
22
1_555
hydrog
A-A MISPAIR
B
A
913
B
N3
A
13
1_555
B
A
922
B
N6
A
21
1_555
hydrog
A-A MISPAIR
B
A
913
B
N6
A
13
1_555
B
A
945
B
N1
A
44
1_555
hydrog
A-A MISPAIR
B
A
914
B
N6
A
14
1_555
B
A
921
B
N3
A
20
1_555
hydrog
REVERSED WATSON-CRICK
B
G
915
B
N1
G
15
1_555
B
C
948
B
O2
C
47
1_555
hydrog
REVERSED WATSON-CRICK
B
G
915
B
N2
G
15
1_555
B
C
948
B
N3
C
47
1_555
hydrog
OMG-PSU MISPAIR
B
OMG
918
B
N1
OMG
17
1_555
B
PSU
955
B
O4
PSU
54
1_555
hydrog
G-C PAIR
B
G
919
B
N1
G
18
1_555
B
C
956
B
N3
C
55
1_555
hydrog
A-C MISPAIR
B
A
926
B
N6
A
25
1_555
B
C
944
B
O2
C
43
1_555
hydrog
WATSON-CRICK
B
C
927
B
N3
C
26
1_555
B
G
943
B
N1
G
42
1_555
hydrog
WATSON-CRICK
B
C
927
B
N4
C
26
1_555
B
G
943
B
O6
G
42
1_555
hydrog
WATSON-CRICK
B
C
927
B
O2
C
26
1_555
B
G
943
B
N2
G
42
1_555
hydrog
WATSON-CRICK
B
C
928
B
N3
C
27
1_555
B
G
942
B
N1
G
41
1_555
hydrog
WATSON-CRICK
B
C
928
B
N4
C
27
1_555
B
G
942
B
O6
G
41
1_555
hydrog
WATSON-CRICK
B
C
928
B
O2
C
27
1_555
B
G
942
B
N2
G
41
1_555
hydrog
WATSON-CRICK
B
G
929
B
N1
G
28
1_555
B
C
941
B
N3
C
40
1_555
hydrog
WATSON-CRICK
B
G
929
B
N2
G
28
1_555
B
C
941
B
O2
C
40
1_555
hydrog
WATSON-CRICK
B
G
929
B
O6
G
28
1_555
B
C
941
B
N4
C
40
1_555
hydrog
WATSON-CRICK
B
G
930
B
N1
G
29
1_555
B
C
940
B
N3
C
39
1_555
hydrog
WATSON-CRICK
B
G
930
B
N2
G
29
1_555
B
C
940
B
O2
C
39
1_555
hydrog
WATSON-CRICK
B
G
930
B
O6
G
29
1_555
B
C
940
B
N4
C
39
1_555
hydrog
WATSON-CRICK
B
U
931
B
N3
U
30
1_555
B
A
939
B
N1
A
38
1_555
hydrog
WATSON-CRICK
B
U
931
B
O4
U
30
1_555
B
A
939
B
N6
A
38
1_555
hydrog
OMU-PSU MISPAIR
B
OMU
932
B
N3
OMU
31
1_555
B
PSU
938
B
O2
PSU
37
1_555
hydrog
U-2MA PAIR
B
U
933
B
O2
U
32
1_555
B
2MA
937
B
N6
2MA
36
1_555
hydrog
WATSON-CRICK
B
G
949
B
N1
G
48
1_555
B
C
965
B
N3
C
64
1_555
hydrog
WATSON-CRICK
B
G
949
B
N2
G
48
1_555
B
C
965
B
O2
C
64
1_555
hydrog
WATSON-CRICK
B
G
949
B
O6
G
48
1_555
B
C
965
B
N4
C
64
1_555
hydrog
WATSON-CRICK
B
C
950
B
N3
C
49
1_555
B
G
964
B
N1
G
63
1_555
hydrog
WATSON-CRICK
B
C
950
B
N4
C
49
1_555
B
G
964
B
O6
G
63
1_555
hydrog
WATSON-CRICK
B
C
950
B
O2
C
49
1_555
B
G
964
B
N2
G
63
1_555
hydrog
WATSON-CRICK
B
A
951
B
N1
A
50
1_555
B
U
963
B
N3
U
62
1_555
hydrog
WATSON-CRICK
B
A
951
B
N6
A
50
1_555
B
U
963
B
O4
U
62
1_555
hydrog
WATSON-CRICK
B
G
952
B
N1
G
51
1_555
B
C
962
B
N3
C
61
1_555
hydrog
WATSON-CRICK
B
G
952
B
N2
G
51
1_555
B
C
962
B
O2
C
61
1_555
hydrog
WATSON-CRICK
B
G
952
B
O6
G
51
1_555
B
C
962
B
N4
C
61
1_555
hydrog
WATSON-CRICK
B
G
953
B
N1
G
52
1_555
B
C
961
B
N3
C
60
1_555
hydrog
WATSON-CRICK
B
G
953
B
N2
G
52
1_555
B
C
961
B
O2
C
60
1_555
hydrog
WATSON-CRICK
B
G
953
B
O6
G
52
1_555
B
C
961
B
N4
C
60
1_555
hydrog
REVERSED HOOGSTEEN
B
5MU
954
B
N3
5MU
53
1_555
B
A
958
B
N7
A
57
1_555
hydrog
REVERSED HOOGSTEEN
B
5MU
954
B
O2
5MU
53
1_555
B
A
958
B
N6
A
57
1_555
ligase/rna
Rossmann fold, Protein-RNA complex, aminoacyl-tRNA synthetase, LIGASE, ligase-rna complex
SYQ_ECOLI
UNP
1
2
P00962
SEAEARPTNFIRQIIDEDLASGKHTTVHTRFPPEPNGYLHIGHAKSICLNFGIAQDYKGQCNLRFDDTNPVKEDIEYVES
IKNDVEWLGFHWSGNVRYSSDYFDQLHAYAIELINKGLAYVDELTPEQIREYRGTLTQPGKNSPYRDRSVEENLALFEKM
RAGGFEEGKACLRAKIDMASPFIVMRDPVLYRIKFAEHHQTGNKWCIYPMYDFTHCISDALEGITHSLCTLEFQDNRRLY
DWVLDNITIPVHPRQYEFSRLNLEYTVMSKRKLNLLVTDKHVEGWDDPRMPTISGLRRRGYTAASIREFCKRIGVTKQDN
TIEMASLESCIREDLNENAPRAMAVIDPVKLVIENYQGEGEMVTMPNHPNKPEMGSRQVPFSGEIWIDRADFREEANKQY
KRLVLGKEVRLRNAYVIKAERVEKDAEGNITTIFCTYDADTLSKDPADGRKVKGVIHWVSAAHALPVEIRLYDRLFSVPN
PGAADDFLSVINPESLVIKQGFAEPSLKDAVAGKAFQFEREGYFCLDSRHSTAEKPVFNRTVGLRDTWAKVGE
4JYZ
PDB
2
4JYZ
2
554
4JYZ
1
553
P00962
A
1
1
553
901
976
4JYZ
901
976
4JYZ
B
2
1
75
3
4
2
7
2
2
2
2
2
parallel
parallel
anti-parallel
anti-parallel
anti-parallel
parallel
parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
parallel
anti-parallel
A
HIS
28
A
HIS
28
A
PHE
31
A
PHE
31
A
GLN
60
A
GLN
60
A
PHE
65
A
PHE
65
A
ARG
97
A
ARG
97
A
TYR
98
A
TYR
98
A
ALA
119
A
ALA
119
A
ASP
122
A
ASP
122
A
CYS
171
A
CYS
171
A
ALA
174
A
ALA
174
A
VAL
189
A
VAL
189
A
ILE
193
A
ILE
193
A
ILE
207
A
ILE
207
A
PRO
209
A
PRO
209
A
HIS
226
A
HIS
226
A
THR
230
A
THR
230
A
ARG
254
A
ARG
254
A
PHE
258
A
PHE
258
A
ARG
341
A
ARG
341
A
ALA
342
A
ALA
342
A
PHE
516
A
PHE
516
A
PHE
518
A
PHE
518
A
GLY
522
A
GLY
522
A
LEU
526
A
LEU
526
A
VAL
537
A
VAL
537
A
GLY
543
A
GLY
543
A
LEU
465
A
LEU
465
A
TYR
472
A
TYR
472
A
LEU
496
A
LEU
496
A
ALA
503
A
ALA
503
A
ALA
344
A
ALA
344
A
VAL
345
A
VAL
345
A
PRO
348
A
PRO
348
A
LYS
350
A
LYS
350
A
TRP
386
A
TRP
386
A
ASP
388
A
ASP
388
A
GLU
361
A
GLU
361
A
PRO
366
A
PRO
366
A
SER
376
A
SER
376
A
PHE
381
A
PHE
381
A
PHE
392
A
PHE
392
A
ARG
393
A
ARG
393
A
LEU
403
A
LEU
403
A
VAL
404
A
VAL
404
A
ARG
410
A
ARG
410
A
LEU
411
A
LEU
411
A
VAL
455
A
VAL
455
A
ILE
456
A
ILE
456
A
ILE
417
A
ILE
417
A
LYS
424
A
LYS
424
A
ILE
430
A
ILE
430
A
TYR
437
A
TYR
437
BINDING SITE FOR RESIDUE ATP A 601
A
ATP
601
Software
13
BINDING SITE FOR RESIDUE SO4 A 602
A
SO4
602
Software
6
BINDING SITE FOR RESIDUE SO4 A 603
A
SO4
603
Software
3
A
PRO
32
A
PRO
32
13
1_555
A
GLU
34
A
GLU
34
13
1_555
A
HIS
40
A
HIS
40
13
1_555
A
GLY
42
A
GLY
42
13
1_555
A
HIS
43
A
HIS
43
13
1_555
A
SER
46
A
SER
46
13
1_555
A
THR
230
A
THR
230
13
1_555
A
ARG
260
A
ARG
260
13
1_555
A
LEU
261
A
LEU
261
13
1_555
A
MET
268
A
MET
268
13
1_555
A
LYS
270
A
LYS
270
13
1_555
A
HOH
705
F
HOH
13
1_555
B
A
976
B
A
75
13
1_555
A
VAL
267
A
VAL
267
6
1_555
A
MET
268
A
MET
268
6
1_555
A
SER
269
A
SER
269
6
1_555
A
LYS
272
A
LYS
272
6
1_555
A
GLY
482
A
GLY
482
6
1_555
A
HOH
771
F
HOH
6
1_555
A
MET
290
A
MET
290
3
1_555
A
LEU
296
A
LEU
296
3
1_555
A
MET
324
A
MET
324
3
1_555
20
C 2 2 21