0.010545
0.000000
0.000000
0.000000
0.010545
0.000000
0.000000
0.000000
0.008440
0.00000
0.00000
0.00000
Jacobson, B.L.
Anumula, R.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.000
90.000
90.000
94.830
94.830
118.490
C28 H31 N5 O6
533.576
2-{2-[(4-carbamimidoylphenyl)carbamoyl]-6-methoxypyridin-3-yl}-5-{[(2S)-1-hydroxy-3,3-dimethylbutan-2-yl]carbamoyl}benzoic acid
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Ca 2
40.078
CALCIUM ION
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C3 H8 O3
92.094
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
O4 S -2
96.063
SULFATE ION
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
O
N
2
N
C
N
3
N
N
Y
4
N
C
Y
5
N
C
Y
6
N
C
Y
7
N
C
N
8
N
C
N
9
N
N
N
10
N
N
Y
11
N
C
Y
12
N
C
Y
13
N
C
Y
14
N
N
Y
15
N
C
N
16
N
O
N
17
N
C
Y
18
N
C
Y
19
N
C
Y
20
N
C
Y
21
N
C
Y
22
N
C
Y
23
N
C
Y
24
N
C
N
25
N
C
N
26
N
O
N
27
N
O
Y
28
N
C
Y
29
N
C
N
30
N
C
N
31
N
O
N
32
N
N
N
33
S
C
N
34
N
C
N
35
N
O
N
36
N
C
N
37
N
C
N
38
N
C
N
39
N
C
N
40
N
H
N
41
N
H
N
42
N
H
N
43
N
H
N
44
N
H
N
45
N
H
N
46
N
H
N
47
N
H
N
48
N
H
N
49
N
H
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
N
N
72
S
C
N
73
N
C
N
74
N
O
N
75
N
C
N
76
N
O
N
77
N
H
N
78
N
H
N
79
N
H
N
80
N
H
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
N
N
85
S
C
N
86
N
C
N
87
N
O
N
88
N
C
N
89
N
C
N
90
N
C
N
91
N
N
N
92
N
C
N
93
N
N
N
94
N
N
N
95
N
O
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
N
N
112
S
C
N
113
N
C
N
114
N
O
N
115
N
C
N
116
N
C
N
117
N
O
N
118
N
N
N
119
N
O
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
N
N
129
S
C
N
130
N
C
N
131
N
O
N
132
N
C
N
133
N
C
N
134
N
O
N
135
N
O
N
136
N
O
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
CA
N
145
N
N
N
146
R
C
N
147
N
C
N
148
N
O
N
149
N
C
N
150
N
S
N
151
N
O
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
N
N
160
S
C
N
161
N
C
N
162
N
O
N
163
N
C
N
164
N
C
N
165
N
C
N
166
N
O
N
167
N
N
N
168
N
O
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
N
N
180
S
C
N
181
N
C
N
182
N
O
N
183
N
C
N
184
N
C
N
185
N
C
N
186
N
O
N
187
N
O
N
188
N
O
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
N
N
199
N
C
N
200
N
C
N
201
N
O
N
202
N
O
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
C
N
209
N
O
N
210
N
C
N
211
N
O
N
212
N
C
N
213
N
O
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
N
N
223
S
C
N
224
N
C
N
225
N
O
N
226
N
C
Y
227
N
C
Y
228
N
N
Y
229
N
C
Y
230
N
C
Y
231
N
N
N
232
N
O
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
O
N
244
N
H
N
245
N
H
N
246
N
N
N
247
S
C
N
248
N
C
N
249
N
O
N
250
S
C
N
251
N
C
N
252
N
C
N
253
N
C
N
254
N
O
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
N
N
269
S
C
N
270
N
C
N
271
N
O
N
272
N
C
N
273
N
C
N
274
N
C
N
275
N
C
N
276
N
O
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
N
N
291
S
C
N
292
N
C
N
293
N
O
N
294
N
C
N
295
N
C
N
296
N
C
N
297
N
C
N
298
N
N
N
299
N
O
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
N
N
316
S
C
N
317
N
C
N
318
N
O
N
319
N
C
N
320
N
C
N
321
N
S
N
322
N
C
N
323
N
O
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
N
N
336
S
C
N
337
N
C
N
338
N
O
N
339
N
C
Y
340
N
C
Y
341
N
C
Y
342
N
C
Y
343
N
C
Y
344
N
C
Y
345
N
C
N
346
N
O
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
N
N
359
S
C
N
360
N
C
N
361
N
O
N
362
N
C
N
363
N
C
N
364
N
C
N
365
N
O
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
N
N
376
S
C
N
377
N
C
N
378
N
O
N
379
N
C
N
380
N
O
N
381
N
O
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
S
N
390
N
O
N
391
N
O
N
392
N
O
N
393
N
O
N
394
N
N
N
395
S
C
N
396
N
C
N
397
N
O
N
398
R
C
N
399
N
O
N
400
N
C
N
401
N
O
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
N
N
412
S
C
N
413
N
C
N
414
N
O
N
415
N
C
Y
416
N
C
Y
417
N
C
Y
418
N
C
Y
419
N
N
Y
420
N
C
Y
421
N
C
Y
422
N
C
Y
423
N
C
Y
424
N
C
N
425
N
O
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
N
N
439
S
C
N
440
N
C
N
441
N
O
N
442
N
C
Y
443
N
C
Y
444
N
C
Y
445
N
C
Y
446
N
C
Y
447
N
C
Y
448
N
C
N
449
N
O
N
450
N
O
N
451
N
H
N
452
N
H
N
453
N
H
N
454
N
H
N
455
N
H
N
456
N
H
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
H
N
462
N
N
N
463
S
C
N
464
N
C
N
465
N
O
N
466
N
C
N
467
N
C
N
468
N
C
N
469
N
O
N
470
N
H
N
471
N
H
N
472
N
H
N
473
N
H
N
474
N
H
N
475
N
H
N
476
N
H
N
477
N
H
N
478
N
H
N
479
N
H
N
480
N
H
N
1
N
sing
N
2
N
sing
N
3
N
doub
N
4
N
sing
Y
5
N
doub
Y
6
N
sing
Y
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
Y
17
N
doub
Y
18
N
doub
Y
19
N
sing
N
20
N
sing
Y
21
N
doub
Y
22
N
sing
Y
23
N
doub
N
24
N
sing
Y
25
N
doub
N
26
N
doub
Y
27
N
sing
Y
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
doub
N
32
N
sing
Y
33
N
doub
Y
34
N
sing
Y
35
N
sing
Y
36
N
doub
Y
37
N
doub
Y
38
N
sing
N
39
N
sing
N
40
N
doub
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
doub
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
doub
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
doub
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
doub
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
doub
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
doub
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
doub
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
doub
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
doub
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
doub
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
doub
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
doub
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
doub
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
doub
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
Y
225
N
sing
Y
226
N
doub
Y
227
N
doub
N
228
N
sing
Y
229
N
sing
N
230
N
sing
Y
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
doub
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
doub
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
doub
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
doub
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
Y
333
N
doub
Y
334
N
sing
Y
335
N
sing
N
336
N
sing
Y
337
N
doub
N
338
N
sing
Y
339
N
doub
N
340
N
sing
Y
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
doub
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
doub
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
doub
N
376
N
doub
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
doub
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
doub
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
Y
406
N
doub
Y
407
N
sing
Y
408
N
sing
N
409
N
sing
Y
410
N
doub
Y
411
N
sing
Y
412
N
sing
N
413
N
sing
Y
414
N
sing
Y
415
N
doub
N
416
N
sing
Y
417
N
doub
N
418
N
sing
Y
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
doub
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
Y
434
N
doub
Y
435
N
sing
Y
436
N
sing
N
437
N
sing
Y
438
N
doub
N
439
N
sing
Y
440
N
doub
N
441
N
sing
Y
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
doub
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
sing
N
464
N
sing
UK
Bioorg.Med.Chem.Lett.
BMCLE8
1127
0960-894X
23
5239
5243
10.1016/j.bmcl.2013.06.028
23927973
Discovery of nonbenzamidine factor VIIa inhibitors using a biaryl acid scaffold.
2013
10.2210/pdb4jzd/pdb
pdb_00004jzd
100.0
1
CCD
2000-09-20
BRANDEIS 4
SINGLE WAVELENGTH
M
x-ray
1
1.1
1.0
X25
NSLS
1.1
1.1
SYNCHROTRON
NSLS BEAMLINE X25
28103.256
Factor VIIa (Heavy Chain)
3.4.21.21
UNP residues 213-466
1
man
polymer
6030.827
Factor VIIa (Light Chain)
3.4.21.21
UNP residues 150-204
1
man
polymer
533.576
2-{2-[(4-carbamimidoylphenyl)carbamoyl]-6-methoxypyridin-3-yl}-5-{[(2S)-1-hydroxy-3,3-dimethylbutan-2-yl]carbamoyl}benzoic acid
2
syn
non-polymer
40.078
CALCIUM ION
1
syn
non-polymer
96.063
SULFATE ION
6
syn
non-polymer
92.094
GLYCEROL
1
syn
non-polymer
18.015
water
297
nat
water
Factor VII heavy chain, Activated Factor VIIA Heavy Chain, Coagulation factor VII, Proconvertin, Serum prothrombin conversion accelerator, SPCA
Factor VII light chain, Coagulation factor VII, Proconvertin, Serum prothrombin conversion accelerator, SPCA
no
no
IVGGKVCPKGECPWQVLLLVNGAQLCGGTLINTIWVVSAAHCFDKIKNWRNLIAVLGEHDLSEHDGDEQSRRVAQVIIPS
TYVPGTTNHDIALLRLHQPVVLTDHVVPLCLPERTFSERTLAFVRFSLVSGWGQLLDRGATALELMVLNVPRLMTQDCLQ
QSRKVGDSPNITEYMFCAGYSDGSKDSCKGDSGGPHATHYRGTWYLTGIVSWGQGCATVGHFGVYTRVSQYIEWLQKLMR
SEPRPGVLLRAPFP
IVGGKVCPKGECPWQVLLLVNGAQLCGGTLINTIWVVSAAHCFDKIKNWRNLIAVLGEHDLSEHDGDEQSRRVAQVIIPS
TYVPGTTNHDIALLRLHQPVVLTDHVVPLCLPERTFSERTLAFVRFSLVSGWGQLLDRGATALELMVLNVPRLMTQDCLQ
QSRKVGDSPNITEYMFCAGYSDGSKDSCKGDSGGPHATHYRGTWYLTGIVSWGQGCATVGHFGVYTRVSQYIEWLQKLMR
SEPRPGVLLRAPFP
H
polypeptide(L)
no
no
ICVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTPTVEYPCGKIPILEKR
ICVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTPTVEYPCGKIPILEKR
L
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
hamster
sample
F7
9606
Homo sapiens
10026
Cricetinae
human
hamster
sample
F7
9606
Homo sapiens
10026
Cricetinae
1
3.90
68.48
VAPOR DIFFUSION, HANGING DROP
5.6
100 mM bicine, pH 9.0, 1.4-1.9 M lithium sulfate, 5% v/v MPD, VAPOR DIFFUSION, HANGING DROP, temperature 277K
277
software
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_site
repository
Initial release
Database references
Refinement description
Data collection
Database references
Derived calculations
Refinement description
1
0
2013-08-21
1
1
2013-09-04
1
2
2017-11-15
1
3
2023-09-20
_software.name
_software.version
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
RCSB
2013-04-02
REL
REL
1NJ
2-{2-[(4-carbamimidoylphenyl)carbamoyl]-6-methoxypyridin-3-yl}-5-{[(2S)-1-hydroxy-3,3-dimethylbutan-2-yl]carbamoyl}benzoic acid
CA
CALCIUM ION
SO4
SULFATE ION
GOL
GLYCEROL
HOH
water
1DAN
PDB ENTRY 1DAN
PDB
experimental model
LG1
301
3
1NJ
1NJ
301
H
LG1
302
3
1NJ
1NJ
302
H
CA
401
4
CA
CA
303
H
SO4
402
5
SO4
SO4
304
H
SO4
403
5
SO4
SO4
305
H
SO4
404
5
SO4
SO4
306
H
SO4
405
5
SO4
SO4
307
H
SO4
407
5
SO4
SO4
308
H
GOL
408
6
GOL
GOL
309
H
SO4
406
5
SO4
SO4
201
L
HOH
1
7
HOH
HOH
401
H
HOH
2
7
HOH
HOH
402
H
HOH
3
7
HOH
HOH
403
H
HOH
4
7
HOH
HOH
404
H
HOH
7
7
HOH
HOH
405
H
HOH
8
7
HOH
HOH
406
H
HOH
9
7
HOH
HOH
407
H
HOH
10
7
HOH
HOH
408
H
HOH
11
7
HOH
HOH
409
H
HOH
12
7
HOH
HOH
410
H
HOH
14
7
HOH
HOH
411
H
HOH
15
7
HOH
HOH
412
H
HOH
16
7
HOH
HOH
413
H
HOH
17
7
HOH
HOH
414
H
HOH
18
7
HOH
HOH
415
H
HOH
19
7
HOH
HOH
416
H
HOH
20
7
HOH
HOH
417
H
HOH
21
7
HOH
HOH
418
H
HOH
23
7
HOH
HOH
419
H
HOH
24
7
HOH
HOH
420
H
HOH
25
7
HOH
HOH
421
H
HOH
26
7
HOH
HOH
422
H
HOH
27
7
HOH
HOH
423
H
HOH
28
7
HOH
HOH
424
H
HOH
29
7
HOH
HOH
425
H
HOH
30
7
HOH
HOH
426
H
HOH
33
7
HOH
HOH
427
H
HOH
34
7
HOH
HOH
428
H
HOH
36
7
HOH
HOH
429
H
HOH
38
7
HOH
HOH
430
H
HOH
39
7
HOH
HOH
431
H
HOH
40
7
HOH
HOH
432
H
HOH
41
7
HOH
HOH
433
H
HOH
42
7
HOH
HOH
434
H
HOH
43
7
HOH
HOH
435
H
HOH
44
7
HOH
HOH
436
H
HOH
45
7
HOH
HOH
437
H
HOH
46
7
HOH
HOH
438
H
HOH
47
7
HOH
HOH
439
H
HOH
48
7
HOH
HOH
440
H
HOH
49
7
HOH
HOH
441
H
HOH
50
7
HOH
HOH
442
H
HOH
52
7
HOH
HOH
443
H
HOH
53
7
HOH
HOH
444
H
HOH
54
7
HOH
HOH
445
H
HOH
55
7
HOH
HOH
446
H
HOH
56
7
HOH
HOH
447
H
HOH
57
7
HOH
HOH
448
H
HOH
58
7
HOH
HOH
449
H
HOH
59
7
HOH
HOH
450
H
HOH
61
7
HOH
HOH
451
H
HOH
62
7
HOH
HOH
452
H
HOH
63
7
HOH
HOH
453
H
HOH
64
7
HOH
HOH
454
H
HOH
66
7
HOH
HOH
455
H
HOH
67
7
HOH
HOH
456
H
HOH
68
7
HOH
HOH
457
H
HOH
69
7
HOH
HOH
458
H
HOH
70
7
HOH
HOH
459
H
HOH
71
7
HOH
HOH
460
H
HOH
72
7
HOH
HOH
461
H
HOH
73
7
HOH
HOH
462
H
HOH
74
7
HOH
HOH
463
H
HOH
75
7
HOH
HOH
464
H
HOH
76
7
HOH
HOH
465
H
HOH
77
7
HOH
HOH
466
H
HOH
78
7
HOH
HOH
467
H
HOH
79
7
HOH
HOH
468
H
HOH
80
7
HOH
HOH
469
H
HOH
81
7
HOH
HOH
470
H
HOH
82
7
HOH
HOH
471
H
HOH
83
7
HOH
HOH
472
H
HOH
84
7
HOH
HOH
473
H
HOH
86
7
HOH
HOH
474
H
HOH
87
7
HOH
HOH
475
H
HOH
88
7
HOH
HOH
476
H
HOH
89
7
HOH
HOH
477
H
HOH
90
7
HOH
HOH
478
H
HOH
92
7
HOH
HOH
479
H
HOH
93
7
HOH
HOH
480
H
HOH
95
7
HOH
HOH
481
H
HOH
96
7
HOH
HOH
482
H
HOH
97
7
HOH
HOH
483
H
HOH
98
7
HOH
HOH
484
H
HOH
99
7
HOH
HOH
485
H
HOH
100
7
HOH
HOH
486
H
HOH
101
7
HOH
HOH
487
H
HOH
102
7
HOH
HOH
488
H
HOH
104
7
HOH
HOH
489
H
HOH
105
7
HOH
HOH
490
H
HOH
106
7
HOH
HOH
491
H
HOH
107
7
HOH
HOH
492
H
HOH
108
7
HOH
HOH
493
H
HOH
109
7
HOH
HOH
494
H
HOH
110
7
HOH
HOH
495
H
HOH
111
7
HOH
HOH
496
H
HOH
112
7
HOH
HOH
497
H
HOH
113
7
HOH
HOH
498
H
HOH
114
7
HOH
HOH
499
H
HOH
115
7
HOH
HOH
500
H
HOH
116
7
HOH
HOH
501
H
HOH
117
7
HOH
HOH
502
H
HOH
118
7
HOH
HOH
503
H
HOH
119
7
HOH
HOH
504
H
HOH
121
7
HOH
HOH
505
H
HOH
123
7
HOH
HOH
506
H
HOH
126
7
HOH
HOH
507
H
HOH
128
7
HOH
HOH
508
H
HOH
129
7
HOH
HOH
509
H
HOH
130
7
HOH
HOH
510
H
HOH
131
7
HOH
HOH
511
H
HOH
132
7
HOH
HOH
512
H
HOH
133
7
HOH
HOH
513
H
HOH
134
7
HOH
HOH
514
H
HOH
135
7
HOH
HOH
515
H
HOH
136
7
HOH
HOH
516
H
HOH
137
7
HOH
HOH
517
H
HOH
138
7
HOH
HOH
518
H
HOH
139
7
HOH
HOH
519
H
HOH
142
7
HOH
HOH
520
H
HOH
143
7
HOH
HOH
521
H
HOH
144
7
HOH
HOH
522
H
HOH
145
7
HOH
HOH
523
H
HOH
146
7
HOH
HOH
524
H
HOH
148
7
HOH
HOH
525
H
HOH
149
7
HOH
HOH
526
H
HOH
150
7
HOH
HOH
527
H
HOH
151
7
HOH
HOH
528
H
HOH
152
7
HOH
HOH
529
H
HOH
153
7
HOH
HOH
530
H
HOH
154
7
HOH
HOH
531
H
HOH
156
7
HOH
HOH
532
H
HOH
157
7
HOH
HOH
533
H
HOH
159
7
HOH
HOH
534
H
HOH
161
7
HOH
HOH
535
H
HOH
162
7
HOH
HOH
536
H
HOH
163
7
HOH
HOH
537
H
HOH
165
7
HOH
HOH
538
H
HOH
166
7
HOH
HOH
539
H
HOH
167
7
HOH
HOH
540
H
HOH
168
7
HOH
HOH
541
H
HOH
171
7
HOH
HOH
542
H
HOH
172
7
HOH
HOH
543
H
HOH
173
7
HOH
HOH
544
H
HOH
175
7
HOH
HOH
545
H
HOH
176
7
HOH
HOH
546
H
HOH
177
7
HOH
HOH
547
H
HOH
178
7
HOH
HOH
548
H
HOH
179
7
HOH
HOH
549
H
HOH
180
7
HOH
HOH
550
H
HOH
182
7
HOH
HOH
551
H
HOH
183
7
HOH
HOH
552
H
HOH
184
7
HOH
HOH
553
H
HOH
185
7
HOH
HOH
554
H
HOH
186
7
HOH
HOH
555
H
HOH
187
7
HOH
HOH
556
H
HOH
188
7
HOH
HOH
557
H
HOH
189
7
HOH
HOH
558
H
HOH
190
7
HOH
HOH
559
H
HOH
191
7
HOH
HOH
560
H
HOH
192
7
HOH
HOH
561
H
HOH
193
7
HOH
HOH
562
H
HOH
194
7
HOH
HOH
563
H
HOH
195
7
HOH
HOH
564
H
HOH
198
7
HOH
HOH
565
H
HOH
199
7
HOH
HOH
566
H
HOH
200
7
HOH
HOH
567
H
HOH
201
7
HOH
HOH
568
H
HOH
202
7
HOH
HOH
569
H
HOH
203
7
HOH
HOH
570
H
HOH
204
7
HOH
HOH
571
H
HOH
205
7
HOH
HOH
572
H
HOH
206
7
HOH
HOH
573
H
HOH
208
7
HOH
HOH
574
H
HOH
209
7
HOH
HOH
575
H
HOH
210
7
HOH
HOH
576
H
HOH
211
7
HOH
HOH
577
H
HOH
212
7
HOH
HOH
578
H
HOH
213
7
HOH
HOH
579
H
HOH
214
7
HOH
HOH
580
H
HOH
215
7
HOH
HOH
581
H
HOH
216
7
HOH
HOH
582
H
HOH
217
7
HOH
HOH
583
H
HOH
218
7
HOH
HOH
584
H
HOH
219
7
HOH
HOH
585
H
HOH
220
7
HOH
HOH
586
H
HOH
221
7
HOH
HOH
587
H
HOH
222
7
HOH
HOH
588
H
HOH
223
7
HOH
HOH
589
H
HOH
224
7
HOH
HOH
590
H
HOH
225
7
HOH
HOH
591
H
HOH
226
7
HOH
HOH
592
H
HOH
227
7
HOH
HOH
593
H
HOH
228
7
HOH
HOH
594
H
HOH
230
7
HOH
HOH
595
H
HOH
231
7
HOH
HOH
596
H
HOH
232
7
HOH
HOH
597
H
HOH
233
7
HOH
HOH
598
H
HOH
235
7
HOH
HOH
599
H
HOH
236
7
HOH
HOH
600
H
HOH
237
7
HOH
HOH
601
H
HOH
238
7
HOH
HOH
602
H
HOH
239
7
HOH
HOH
603
H
HOH
240
7
HOH
HOH
604
H
HOH
241
7
HOH
HOH
605
H
HOH
242
7
HOH
HOH
606
H
HOH
243
7
HOH
HOH
607
H
HOH
244
7
HOH
HOH
608
H
HOH
245
7
HOH
HOH
609
H
HOH
246
7
HOH
HOH
610
H
HOH
247
7
HOH
HOH
611
H
HOH
248
7
HOH
HOH
612
H
HOH
249
7
HOH
HOH
613
H
HOH
250
7
HOH
HOH
614
H
HOH
251
7
HOH
HOH
615
H
HOH
252
7
HOH
HOH
616
H
HOH
253
7
HOH
HOH
617
H
HOH
254
7
HOH
HOH
618
H
HOH
255
7
HOH
HOH
619
H
HOH
256
7
HOH
HOH
620
H
HOH
257
7
HOH
HOH
621
H
HOH
259
7
HOH
HOH
622
H
HOH
260
7
HOH
HOH
623
H
HOH
261
7
HOH
HOH
624
H
HOH
263
7
HOH
HOH
625
H
HOH
264
7
HOH
HOH
626
H
HOH
265
7
HOH
HOH
627
H
HOH
266
7
HOH
HOH
628
H
HOH
267
7
HOH
HOH
629
H
HOH
268
7
HOH
HOH
630
H
HOH
269
7
HOH
HOH
631
H
HOH
270
7
HOH
HOH
632
H
HOH
271
7
HOH
HOH
633
H
HOH
272
7
HOH
HOH
634
H
HOH
273
7
HOH
HOH
635
H
HOH
274
7
HOH
HOH
636
H
HOH
275
7
HOH
HOH
637
H
HOH
276
7
HOH
HOH
638
H
HOH
277
7
HOH
HOH
639
H
HOH
278
7
HOH
HOH
640
H
HOH
279
7
HOH
HOH
641
H
HOH
280
7
HOH
HOH
642
H
HOH
281
7
HOH
HOH
643
H
HOH
282
7
HOH
HOH
644
H
HOH
283
7
HOH
HOH
645
H
HOH
284
7
HOH
HOH
646
H
HOH
285
7
HOH
HOH
647
H
HOH
286
7
HOH
HOH
648
H
HOH
287
7
HOH
HOH
649
H
HOH
289
7
HOH
HOH
650
H
HOH
291
7
HOH
HOH
651
H
HOH
292
7
HOH
HOH
652
H
HOH
293
7
HOH
HOH
653
H
HOH
294
7
HOH
HOH
654
H
HOH
296
7
HOH
HOH
655
H
HOH
297
7
HOH
HOH
656
H
HOH
5
7
HOH
HOH
301
L
HOH
6
7
HOH
HOH
302
L
HOH
13
7
HOH
HOH
303
L
HOH
22
7
HOH
HOH
304
L
HOH
31
7
HOH
HOH
305
L
HOH
32
7
HOH
HOH
306
L
HOH
35
7
HOH
HOH
307
L
HOH
37
7
HOH
HOH
308
L
HOH
51
7
HOH
HOH
309
L
HOH
60
7
HOH
HOH
310
L
HOH
65
7
HOH
HOH
311
L
HOH
85
7
HOH
HOH
312
L
HOH
91
7
HOH
HOH
313
L
HOH
94
7
HOH
HOH
314
L
HOH
103
7
HOH
HOH
315
L
HOH
120
7
HOH
HOH
316
L
HOH
122
7
HOH
HOH
317
L
HOH
124
7
HOH
HOH
318
L
HOH
125
7
HOH
HOH
319
L
HOH
127
7
HOH
HOH
320
L
HOH
140
7
HOH
HOH
321
L
HOH
141
7
HOH
HOH
322
L
HOH
147
7
HOH
HOH
323
L
HOH
155
7
HOH
HOH
324
L
HOH
158
7
HOH
HOH
325
L
HOH
160
7
HOH
HOH
326
L
HOH
164
7
HOH
HOH
327
L
HOH
169
7
HOH
HOH
328
L
HOH
170
7
HOH
HOH
329
L
HOH
174
7
HOH
HOH
330
L
HOH
181
7
HOH
HOH
331
L
HOH
196
7
HOH
HOH
332
L
HOH
197
7
HOH
HOH
333
L
HOH
207
7
HOH
HOH
334
L
HOH
229
7
HOH
HOH
335
L
HOH
234
7
HOH
HOH
336
L
HOH
258
7
HOH
HOH
337
L
HOH
262
7
HOH
HOH
338
L
HOH
288
7
HOH
HOH
339
L
HOH
290
7
HOH
HOH
340
L
HOH
295
7
HOH
HOH
341
L
ILE
16
n
1
ILE
16
H
VAL
17
n
2
VAL
17
H
GLY
18
n
3
GLY
18
H
GLY
19
n
4
GLY
19
H
LYS
20
n
5
LYS
20
H
VAL
21
n
6
VAL
21
H
CYS
22
n
7
CYS
22
H
PRO
23
n
8
PRO
23
H
LYS
24
n
9
LYS
24
H
GLY
25
n
10
GLY
25
H
GLU
26
n
11
GLU
26
H
CYS
27
n
12
CYS
27
H
PRO
28
n
13
PRO
28
H
TRP
29
n
14
TRP
29
H
GLN
30
n
15
GLN
30
H
VAL
31
n
16
VAL
31
H
LEU
32
n
17
LEU
32
H
LEU
33
n
18
LEU
33
H
LEU
34
n
19
LEU
34
H
VAL
35
n
20
VAL
35
H
ASN
37
n
21
ASN
37
H
GLY
38
n
22
GLY
38
H
ALA
39
n
23
ALA
39
H
GLN
40
n
24
GLN
40
H
LEU
41
n
25
LEU
41
H
CYS
42
n
26
CYS
42
H
GLY
43
n
27
GLY
43
H
GLY
44
n
28
GLY
44
H
THR
45
n
29
THR
45
H
LEU
46
n
30
LEU
46
H
ILE
47
n
31
ILE
47
H
ASN
48
n
32
ASN
48
H
THR
49
n
33
THR
49
H
ILE
50
n
34
ILE
50
H
TRP
51
n
35
TRP
51
H
VAL
52
n
36
VAL
52
H
VAL
53
n
37
VAL
53
H
SER
54
n
38
SER
54
H
ALA
55
n
39
ALA
55
H
ALA
56
n
40
ALA
56
H
HIS
57
n
41
HIS
57
H
CYS
58
n
42
CYS
58
H
PHE
59
n
43
PHE
59
H
ASP
60
n
44
ASP
60
H
LYS
60
n
45
A
LYS
60
H
ILE
60
n
46
B
ILE
60
H
LYS
60
n
47
C
LYS
60
H
ASN
60
n
48
D
ASN
60
H
TRP
61
n
49
TRP
61
H
ARG
62
n
50
ARG
62
H
ASN
63
n
51
ASN
63
H
LEU
64
n
52
LEU
64
H
ILE
65
n
53
ILE
65
H
ALA
66
n
54
ALA
66
H
VAL
67
n
55
VAL
67
H
LEU
68
n
56
LEU
68
H
GLY
69
n
57
GLY
69
H
GLU
70
n
58
GLU
70
H
HIS
71
n
59
HIS
71
H
ASP
72
n
60
ASP
72
H
LEU
73
n
61
LEU
73
H
SER
74
n
62
SER
74
H
GLU
75
n
63
GLU
75
H
HIS
76
n
64
HIS
76
H
ASP
77
n
65
ASP
77
H
GLY
78
n
66
GLY
78
H
ASP
79
n
67
ASP
79
H
GLU
80
n
68
GLU
80
H
GLN
81
n
69
GLN
81
H
SER
82
n
70
SER
82
H
ARG
83
n
71
ARG
83
H
ARG
84
n
72
ARG
84
H
VAL
85
n
73
VAL
85
H
ALA
86
n
74
ALA
86
H
GLN
87
n
75
GLN
87
H
VAL
88
n
76
VAL
88
H
ILE
89
n
77
ILE
89
H
ILE
90
n
78
ILE
90
H
PRO
91
n
79
PRO
91
H
SER
92
n
80
SER
92
H
THR
93
n
81
THR
93
H
TYR
94
n
82
TYR
94
H
VAL
95
n
83
VAL
95
H
PRO
96
n
84
PRO
96
H
GLY
97
n
85
GLY
97
H
THR
98
n
86
THR
98
H
THR
99
n
87
THR
99
H
ASN
100
n
88
ASN
100
H
HIS
101
n
89
HIS
101
H
ASP
102
n
90
ASP
102
H
ILE
103
n
91
ILE
103
H
ALA
104
n
92
ALA
104
H
LEU
105
n
93
LEU
105
H
LEU
106
n
94
LEU
106
H
ARG
107
n
95
ARG
107
H
LEU
108
n
96
LEU
108
H
HIS
109
n
97
HIS
109
H
GLN
110
n
98
GLN
110
H
PRO
111
n
99
PRO
111
H
VAL
112
n
100
VAL
112
H
VAL
113
n
101
VAL
113
H
LEU
114
n
102
LEU
114
H
THR
115
n
103
THR
115
H
ASP
116
n
104
ASP
116
H
HIS
117
n
105
HIS
117
H
VAL
118
n
106
VAL
118
H
VAL
119
n
107
VAL
119
H
PRO
120
n
108
PRO
120
H
LEU
121
n
109
LEU
121
H
CYS
122
n
110
CYS
122
H
LEU
123
n
111
LEU
123
H
PRO
124
n
112
PRO
124
H
GLU
125
n
113
GLU
125
H
ARG
126
n
114
ARG
126
H
THR
127
n
115
THR
127
H
PHE
128
n
116
PHE
128
H
SER
129
n
117
SER
129
H
GLU
129
n
118
A
GLU
129
H
ARG
129
n
119
B
ARG
129
H
THR
129
n
120
C
THR
129
H
LEU
129
n
121
D
LEU
129
H
ALA
129
n
122
E
ALA
129
H
PHE
129
n
123
F
PHE
129
H
VAL
129
n
124
G
VAL
129
H
ARG
134
n
125
ARG
134
H
PHE
135
n
126
PHE
135
H
SER
136
n
127
SER
136
H
LEU
137
n
128
LEU
137
H
VAL
138
n
129
VAL
138
H
SER
139
n
130
SER
139
H
GLY
140
n
131
GLY
140
H
TRP
141
n
132
TRP
141
H
GLY
142
n
133
GLY
142
H
GLN
143
n
134
GLN
143
H
LEU
144
n
135
LEU
144
H
LEU
145
n
136
LEU
145
H
ASP
146
n
137
ASP
146
H
ARG
147
n
138
ARG
147
H
GLY
149
n
139
GLY
149
H
ALA
150
n
140
ALA
150
H
THR
151
n
141
THR
151
H
ALA
152
n
142
ALA
152
H
LEU
153
n
143
LEU
153
H
GLU
154
n
144
GLU
154
H
LEU
155
n
145
LEU
155
H
MET
156
n
146
MET
156
H
VAL
157
n
147
VAL
157
H
LEU
158
n
148
LEU
158
H
ASN
159
n
149
ASN
159
H
VAL
160
n
150
VAL
160
H
PRO
161
n
151
PRO
161
H
ARG
162
n
152
ARG
162
H
LEU
163
n
153
LEU
163
H
MET
164
n
154
MET
164
H
THR
165
n
155
THR
165
H
GLN
166
n
156
GLN
166
H
ASP
167
n
157
ASP
167
H
CYS
168
n
158
CYS
168
H
LEU
169
n
159
LEU
169
H
GLN
170
n
160
GLN
170
H
GLN
170
n
161
A
GLN
170
H
SER
170
n
162
B
SER
170
H
ARG
170
n
163
C
ARG
170
H
LYS
170
n
164
D
LYS
170
H
VAL
170
n
165
E
VAL
170
H
GLY
170
n
166
F
GLY
170
H
ASP
170
n
167
G
ASP
170
H
SER
170
n
168
H
SER
170
H
PRO
170
n
169
I
PRO
170
H
ASN
175
n
170
ASN
175
H
ILE
176
n
171
ILE
176
H
THR
177
n
172
THR
177
H
GLU
178
n
173
GLU
178
H
TYR
179
n
174
TYR
179
H
MET
180
n
175
MET
180
H
PHE
181
n
176
PHE
181
H
CYS
182
n
177
CYS
182
H
ALA
183
n
178
ALA
183
H
GLY
184
n
179
A
GLY
184
H
TYR
184
n
180
TYR
184
H
SER
185
n
181
SER
185
H
ASP
186
n
182
ASP
186
H
GLY
187
n
183
GLY
187
H
SER
188
n
184
A
SER
188
H
LYS
188
n
185
LYS
188
H
ASP
189
n
186
ASP
189
H
SER
190
n
187
SER
190
H
CYS
191
n
188
CYS
191
H
LYS
192
n
189
LYS
192
H
GLY
193
n
190
GLY
193
H
ASP
194
n
191
ASP
194
H
SER
195
n
192
SER
195
H
GLY
196
n
193
GLY
196
H
GLY
197
n
194
GLY
197
H
PRO
198
n
195
PRO
198
H
HIS
199
n
196
HIS
199
H
ALA
200
n
197
ALA
200
H
THR
201
n
198
THR
201
H
HIS
202
n
199
HIS
202
H
TYR
203
n
200
TYR
203
H
ARG
204
n
201
ARG
204
H
GLY
205
n
202
GLY
205
H
THR
206
n
203
THR
206
H
TRP
207
n
204
TRP
207
H
TYR
208
n
205
TYR
208
H
LEU
209
n
206
LEU
209
H
THR
210
n
207
THR
210
H
GLY
211
n
208
GLY
211
H
ILE
212
n
209
ILE
212
H
VAL
213
n
210
VAL
213
H
SER
214
n
211
SER
214
H
TRP
215
n
212
TRP
215
H
GLY
216
n
213
GLY
216
H
GLN
217
n
214
GLN
217
H
GLY
219
n
215
GLY
219
H
CYS
220
n
216
CYS
220
H
ALA
221
n
217
A
ALA
221
H
THR
221
n
218
THR
221
H
VAL
222
n
219
VAL
222
H
GLY
223
n
220
GLY
223
H
HIS
224
n
221
HIS
224
H
PHE
225
n
222
PHE
225
H
GLY
226
n
223
GLY
226
H
VAL
227
n
224
VAL
227
H
TYR
228
n
225
TYR
228
H
THR
229
n
226
THR
229
H
ARG
230
n
227
ARG
230
H
VAL
231
n
228
VAL
231
H
SER
232
n
229
SER
232
H
GLN
233
n
230
GLN
233
H
TYR
234
n
231
TYR
234
H
ILE
235
n
232
ILE
235
H
GLU
236
n
233
GLU
236
H
TRP
237
n
234
TRP
237
H
LEU
238
n
235
LEU
238
H
GLN
239
n
236
GLN
239
H
LYS
240
n
237
LYS
240
H
LEU
241
n
238
LEU
241
H
MET
242
n
239
MET
242
H
ARG
243
n
240
ARG
243
H
SER
244
n
241
SER
244
H
GLU
245
n
242
GLU
245
H
PRO
246
n
243
PRO
246
H
ARG
247
n
244
ARG
247
H
PRO
248
n
245
PRO
248
H
GLY
249
n
246
GLY
249
H
VAL
250
n
247
VAL
250
H
LEU
251
n
248
LEU
251
H
LEU
252
n
249
LEU
252
H
ARG
253
n
250
ARG
253
H
ALA
254
n
251
ALA
254
H
PRO
255
n
252
PRO
255
H
PHE
256
n
253
PHE
256
H
PRO
257
n
254
PRO
257
H
ILE
90
n
1
ILE
90
L
CYS
91
n
2
CYS
91
L
VAL
92
n
3
VAL
92
L
ASN
93
n
4
ASN
93
L
GLU
94
n
5
GLU
94
L
ASN
95
n
6
ASN
95
L
GLY
96
n
7
GLY
96
L
GLY
97
n
8
GLY
97
L
CYS
98
n
9
CYS
98
L
GLU
99
n
10
GLU
99
L
GLN
100
n
11
GLN
100
L
TYR
101
n
12
TYR
101
L
CYS
102
n
13
CYS
102
L
SER
103
n
14
SER
103
L
ASP
104
n
15
ASP
104
L
HIS
105
n
16
HIS
105
L
THR
106
n
17
THR
106
L
GLY
107
n
18
GLY
107
L
THR
108
n
19
THR
108
L
LYS
109
n
20
LYS
109
L
ARG
110
n
21
ARG
110
L
SER
111
n
22
SER
111
L
CYS
112
n
23
CYS
112
L
ARG
113
n
24
ARG
113
L
CYS
114
n
25
CYS
114
L
HIS
115
n
26
HIS
115
L
GLU
116
n
27
GLU
116
L
GLY
117
n
28
GLY
117
L
TYR
118
n
29
TYR
118
L
SER
119
n
30
SER
119
L
LEU
120
n
31
LEU
120
L
LEU
121
n
32
LEU
121
L
ALA
122
n
33
ALA
122
L
ASP
123
n
34
ASP
123
L
GLY
124
n
35
GLY
124
L
VAL
125
n
36
VAL
125
L
SER
126
n
37
SER
126
L
CYS
127
n
38
CYS
127
L
THR
128
n
39
THR
128
L
PRO
129
n
40
PRO
129
L
THR
130
n
41
THR
130
L
VAL
131
n
42
VAL
131
L
GLU
132
n
43
GLU
132
L
TYR
133
n
44
TYR
133
L
PRO
134
n
45
PRO
134
L
CYS
135
n
46
CYS
135
L
GLY
136
n
47
GLY
136
L
LYS
137
n
48
LYS
137
L
ILE
138
n
49
ILE
138
L
PRO
139
n
50
PRO
139
L
ILE
140
n
51
ILE
140
L
LEU
141
n
52
LEU
141
L
GLU
142
n
53
GLU
142
L
LYS
143
n
54
LYS
143
L
ARG
144
n
55
ARG
144
L
author_and_software_defined_assembly
PISA
2
dimeric
3470
-96
14410
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
H
N
LYS
20
A
N
LYS
5
H
O
VAL
157
A
O
VAL
147
H
N
LEU
163
A
N
LEU
153
H
O
CYS
182
A
O
CYS
177
H
N
PHE
181
A
N
PHE
176
H
O
TYR
228
A
O
TYR
225
H
O
VAL
227
A
O
VAL
224
H
N
TRP
215
A
N
TRP
212
H
O
TYR
208
A
O
TYR
205
H
N
THR
201
A
N
THR
198
H
O
ALA
200
A
O
ALA
197
H
N
LEU
137
A
N
LEU
128
H
N
SER
136
A
N
SER
127
H
O
VAL
160
A
O
VAL
150
H
O
LEU
252
A
O
LEU
249
H
N
VAL
88
A
N
VAL
76
H
N
ILE
89
A
N
ILE
77
H
O
LEU
105
A
O
LEU
93
H
O
LEU
106
A
O
LEU
94
H
N
VAL
52
A
N
VAL
36
H
O
VAL
53
A
O
VAL
37
H
N
THR
45
A
N
THR
29
H
O
CYS
42
A
O
CYS
26
H
N
LEU
33
A
N
LEU
18
H
N
LEU
34
A
N
LEU
19
H
O
ILE
65
A
O
ILE
53
H
N
LEU
68
A
N
LEU
56
H
O
GLN
81
A
O
GLN
69
L
N
SER
103
B
N
SER
14
L
O
SER
111
B
O
SER
22
L
N
SER
119
B
N
SER
30
L
O
THR
128
B
O
THR
39
1
H
HOH
654
M
HOH
C
1
H
CG
LYS
60
A
CG
LYS
47
1
Y
C
1
H
CD
LYS
60
A
CD
LYS
47
1
Y
C
1
H
CE
LYS
60
A
CE
LYS
47
1
Y
C
1
H
NZ
LYS
60
A
NZ
LYS
47
1
Y
1
H
CG
GLN
166
A
CG
GLN
156
1
Y
1
H
CD
GLN
166
A
CD
GLN
156
1
Y
1
H
OE1
GLN
166
A
OE1
GLN
156
1
Y
1
H
NE2
GLN
166
A
NE2
GLN
156
1
Y
G
1
H
CG
ASP
170
A
CG
ASP
167
1
Y
G
1
H
OD1
ASP
170
A
OD1
ASP
167
1
Y
G
1
H
OD2
ASP
170
A
OD2
ASP
167
1
Y
1
L
OG1
THR
106
B
OG1
THR
17
1
Y
1
L
CG2
THR
106
B
CG2
THR
17
1
Y
1
H
HIS
71
-133.34
-62.58
C
1
H
THR
129
-120.60
-60.27
1
H
SER
214
-121.63
-63.51
1
L
GLN
100
-122.75
-103.11
1
L
VAL
125
-130.51
-38.95
1
L
TYR
133
-119.34
66.30
114.960
27.0992
8.350
1.2625
0.0000
0.0000
1.2625
0.0000
-2.5251
0.9486
0.9342
IDEAL-DIST CONTACT TERM CONTACT SETUP. RESIDUE
TYPES WITHOUT CCP4 ATOM TYPE IN LIBRARY=CA GOL.
NUMBER OF ATOMS WITH PROPER CCP4 ATOM TYPE=2801.
NUMBER WITH APPROX DEFAULT CCP4 ATOM TYPE=6.
NUMBER TREATED BY BAD NON-BONDED CONTACTS=1.
0.1966
0.1643
0.1657
2.200
24.679
1218
27973
4.35
99.68
1.000
0.500
0.1470
RANDOM
1
THROUGHOUT
0.0
FOURIER SYNTHESIS
0.163
0.143
0.136
PDB ENTRY 1DAN
0.194
2.200
24.679
297
2788
115
0
2376
833
SINUSOIDAL
2.000
51
HARMONIC
2.000
431
HARMONIC
5.000
2574
HARMONIC
20.000
0
SEMIHARMONIC
5.000
316
SEMIHARMONIC
5.000
3108
SEMIHARMONIC
4.000
0.010
2574
HARMONIC
2.000
1.050
3519
HARMONIC
2.000
3.840
15.280
0.2189
0.1749
0.1770
2.280
134
2659
2793
14
4.8
99.68
29.69
2.198
24.679
4JZD
28001
0.0
0.071
1
24.8
4.3
100.0
0.183
2.198
2.380
8.1
1
4.1
100.0
refinement
Gerard Bricogne
buster-develop@GlobalPhasing.com
http://www.globalphasing.com/buster/
BUSTER-TNT
program
BUSTER 2.9.4
data extraction
PDB
deposit@deposit.rcsb.org
April 22, 2011
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.11
data reduction
DENZO
(DENZO)
data scaling
SCALEPACK
(DENZO)
refinement
BUSTER
2.9.4
Structure of factor VIIA in complex with the inhibitor 2-{2-[(4-carbamimidoylphenyl)carbamoyl]-6-methoxypyridin-3-yl}-5-{[(2S)-1-hydroxy-3,3-dimethylbutan-2-yl]carbamoyl}benzoic acid
1
N
N
2
N
N
3
N
N
3
N
N
4
N
N
5
N
N
5
N
N
5
N
N
5
N
N
5
N
N
6
N
N
5
N
N
7
N
N
7
N
N
H
ALA
55
A
ALA
39
HELX_P
H
ASP
60
A
ASP
44
5
1
6
H
ASN
60
A
ASN
48
HELX_P
H
ARG
62
A
ARG
50
5
2
3
D
H
GLU
125
A
GLU
113
HELX_P
H
THR
129
A
THR
120
1
3
8
C
H
LEU
129
A
LEU
121
HELX_P
H
VAL
129
A
VAL
124
5
4
4
D
G
H
MET
164
A
MET
154
HELX_P
H
SER
170
A
SER
162
1
5
9
B
H
TYR
234
A
TYR
231
HELX_P
H
ARG
243
A
ARG
240
1
6
10
L
ASN
93
B
ASN
4
HELX_P
L
CYS
98
B
CYS
9
5
7
6
L
ILE
138
B
ILE
49
HELX_P
L
LYS
143
B
LYS
54
1
8
6
disulf
2.255
A
H
CYS
22
A
SG
CYS
7
1_555
H
CYS
27
A
SG
CYS
12
1_555
disulf
2.025
H
CYS
42
A
SG
CYS
26
1_555
H
CYS
58
A
SG
CYS
42
1_555
disulf
2.029
H
CYS
122
A
SG
CYS
110
1_555
L
CYS
135
B
SG
CYS
46
1_555
disulf
2.068
H
CYS
168
A
SG
CYS
158
1_555
H
CYS
182
A
SG
CYS
177
1_555
disulf
2.039
H
CYS
191
A
SG
CYS
188
1_555
H
CYS
220
A
SG
CYS
216
1_555
disulf
2.037
L
CYS
91
B
SG
CYS
2
1_555
L
CYS
102
B
SG
CYS
13
1_555
disulf
2.040
L
CYS
98
B
SG
CYS
9
1_555
L
CYS
112
B
SG
CYS
23
1_555
disulf
2.058
L
CYS
114
B
SG
CYS
25
1_555
L
CYS
127
B
SG
CYS
38
1_555
HYDROLASE/HYDROLASE INHIBITOR
glycoprotein, serine protease, plasma, blood coagulation factor, protein inhibitor complex, calcium binding, HYDROLASE-HYDROLASE INHIBITOR complex
H
PHE
256
A
PHE
253
1
H
PRO
257
A
PRO
254
0.93
FA7_HUMAN
UNP
1
213
P08709
IVGGKVCPKGECPWQVLLLVNGAQLCGGTLINTIWVVSAAHCFDKIKNWRNLIAVLGEHDLSEHDGDEQSRRVAQVIIPS
TYVPGTTNHDIALLRLHQPVVLTDHVVPLCLPERTFSERTLAFVRFSLVSGWGQLLDRGATALELMVLNVPRLMTQDCLQ
QSRKVGDSPNITEYMFCAGYSDGSKDSCKGDSGGPHATHYRGTWYLTGIVSWGQGCATVGHFGVYTRVSQYIEWLQKLMR
SEPRPGVLLRAPFP
FA7_HUMAN
UNP
2
150
P08709
ICVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTPTVEYPCGKIPILEKR
213
466
4JZD
16
257
P08709
H
1
1
254
150
204
4JZD
90
144
P08709
L
2
1
55
8
8
2
2
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
H
LYS
20
A
LYS
5
H
VAL
21
A
VAL
6
H
MET
156
A
MET
146
H
LEU
163
A
LEU
153
H
MET
180
A
MET
175
H
ALA
183
A
ALA
178
H
GLY
226
A
GLY
223
H
ARG
230
A
ARG
227
H
THR
206
A
THR
203
H
TRP
215
A
TRP
212
H
PRO
198
A
PRO
195
H
TYR
203
A
TYR
200
H
PHE
135
A
PHE
126
H
GLY
140
A
GLY
131
H
MET
156
A
MET
146
H
LEU
163
A
LEU
153
H
LEU
251
A
LEU
248
H
ALA
254
A
ALA
251
H
GLN
81
A
GLN
69
H
PRO
91
A
PRO
79
H
ALA
104
A
ALA
92
H
LEU
108
A
LEU
96
H
TRP
51
A
TRP
35
H
SER
54
A
SER
38
H
ALA
39
A
ALA
23
H
LEU
46
A
LEU
30
H
GLN
30
A
GLN
15
H
VAL
35
A
VAL
20
H
LEU
64
A
LEU
52
H
LEU
68
A
LEU
56
H
GLN
81
A
GLN
69
H
PRO
91
A
PRO
79
L
TYR
101
B
TYR
12
L
ASP
104
B
ASP
15
L
ARG
110
B
ARG
21
L
ARG
113
B
ARG
24
L
TYR
118
B
TYR
29
L
LEU
120
B
LEU
31
L
CYS
127
B
CYS
38
L
PRO
129
B
PRO
40
BINDING SITE FOR RESIDUE 1NJ H 301
H
1NJ
301
Software
17
BINDING SITE FOR RESIDUE 1NJ H 302
H
1NJ
302
Software
19
BINDING SITE FOR RESIDUE CA H 303
H
CA
303
Software
2
BINDING SITE FOR RESIDUE SO4 H 304
H
SO4
304
Software
11
BINDING SITE FOR RESIDUE SO4 H 305
H
SO4
305
Software
4
BINDING SITE FOR RESIDUE SO4 H 306
H
SO4
306
Software
7
BINDING SITE FOR RESIDUE SO4 H 307
H
SO4
307
Software
5
BINDING SITE FOR RESIDUE SO4 H 308
H
SO4
308
Software
4
BINDING SITE FOR RESIDUE GOL H 309
H
GOL
309
Software
6
BINDING SITE FOR RESIDUE SO4 L 201
L
SO4
201
Software
4
H
HIS
57
A
HIS
41
17
1_555
H
ASP
189
A
ASP
186
17
1_555
H
SER
190
A
SER
187
17
1_555
H
LYS
192
A
LYS
189
17
1_555
H
GLY
193
A
GLY
190
17
1_555
H
SER
195
A
SER
192
17
1_555
H
SER
214
A
SER
211
17
1_555
H
TRP
215
A
TRP
212
17
1_555
H
GLY
216
A
GLY
213
17
1_555
H
GLY
219
A
GLY
215
17
1_555
H
GLY
226
A
GLY
223
17
1_555
H
1NJ
302
D
1NJ
17
1_555
H
SO4
306
H
SO4
17
1_555
H
GOL
309
K
GOL
17
1_555
H
HOH
583
M
HOH
17
1_555
H
HOH
594
M
HOH
17
1_555
H
HOH
595
M
HOH
17
3_645
H
PRO
246
A
PRO
243
19
3_645
H
ARG
247
A
ARG
244
19
3_645
H
PRO
248
A
PRO
245
19
3_645
H
1NJ
301
C
1NJ
19
1_555
H
SO4
304
F
SO4
19
1_555
H
SO4
306
H
SO4
19
1_555
H
HOH
527
M
HOH
19
1_555
H
HOH
579
M
HOH
19
1_555
H
HOH
602
M
HOH
19
1_555
H
HOH
645
M
HOH
19
1_555
H
HOH
650
M
HOH
19
1_555
L
SER
119
B
SER
30
19
6_555
L
LEU
120
B
LEU
31
19
6_555
L
LEU
121
B
LEU
32
19
6_555
L
THR
128
B
THR
39
19
6_555
L
PRO
129
B
PRO
40
19
6_555
L
THR
130
B
THR
41
19
6_555
L
GLU
132
B
GLU
43
19
6_555
L
HOH
335
N
HOH
19
6_555
H
ARG
84
A
ARG
72
2
1_555
H
HIS
109
A
HIS
97
2
1_555
H
GLN
143
A
GLN
134
11
1_555
H
ARG
147
A
ARG
138
11
1_555
H
LYS
192
A
LYS
189
11
1_555
H
ARG
247
A
ARG
244
11
3_645
H
1NJ
302
D
1NJ
11
1_555
H
SO4
306
H
SO4
11
1_555
H
HOH
503
M
HOH
11
1_555
H
HOH
533
M
HOH
11
1_555
H
HOH
561
M
HOH
11
1_555
H
HOH
595
M
HOH
11
3_645
H
HOH
602
M
HOH
11
1_555
H
MET
164
A
MET
154
4
1_555
H
THR
165
A
THR
155
4
1_555
H
ARG
230
A
ARG
227
4
1_555
H
HOH
570
M
HOH
4
1_555
H
LYS
192
A
LYS
189
7
1_555
H
1NJ
301
C
1NJ
7
1_555
H
1NJ
302
D
1NJ
7
1_555
H
SO4
304
F
SO4
7
1_555
H
HOH
479
M
HOH
7
1_555
H
HOH
563
M
HOH
7
1_555
H
HOH
598
M
HOH
7
1_555
H
THR
98
A
THR
86
5
1_555
H
THR
99
A
THR
87
5
1_555
H
PRO
170
A
PRO
169
I
5
1_555
H
HOH
520
M
HOH
5
1_555
H
HOH
548
M
HOH
5
1_555
H
GLN
81
A
GLN
69
4
1_555
H
SER
82
A
SER
70
4
1_555
H
ARG
83
A
ARG
71
4
1_555
H
HOH
562
M
HOH
4
1_555
H
LEU
41
A
LEU
25
6
1_555
H
HIS
57
A
HIS
41
6
1_555
H
1NJ
301
C
1NJ
6
1_555
H
HOH
590
M
HOH
6
1_555
H
HOH
598
M
HOH
6
1_555
H
HOH
626
M
HOH
6
1_555
H
ARG
129
A
ARG
119
B
4
1_555
L
CYS
91
B
CYS
2
4
1_555
L
CYS
102
B
CYS
13
4
1_555
L
ASP
104
B
ASP
15
4
1_555
92
P 41 21 2