0.015364 0.000000 0.000000 0.000000 0.006071 0.000000 0.000000 0.000000 0.012815 0.00000 0.00000 0.00000 Acharya, P. Kwong, P.D. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 65.087 164.719 78.031 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H9 N O2 115.130 D-PROLINE D-peptide linking C6 H5 O7 -3 189.100 CITRATE ANION non-polymer C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C3 H8 O 60.095 ISOPROPYL ALCOHOL 2-PROPANOL non-polymer C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C3 H6 O2 S 106.144 BETA-MERCAPTOPROPIONIC ACID non-polymer Na 1 22.990 SODIUM ION non-polymer C8 H15 N O6 221.208 2-acetamido-2-deoxy-beta-D-glucopyranose D-saccharide, beta linking H2 N 16.023 AMINO GROUP non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C16 H23 N O3 277.359 n O-(cyclohexylmethyl)-L-tyrosine L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking UK Structure STRUE6 2005 0969-2126 21 1018 1029 10.1016/j.str.2013.04.015 23707685 Structural Basis for Highly Effective HIV-1 Neutralization by CD4-Mimetic Miniproteins Revealed by 1.5 A Cocrystal Structure of gp120 and M48U1. 2013 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 IMAGE PLATE 2010-06-19 MAR scanner 300 mm plate SI(111) SINGLE WAVELENGTH M x-ray 1 1.0000 1.0 22-ID APS 1.0000 SYNCHROTRON APS BEAMLINE 22-ID 41695.406 HIV-1 YU2 gp120 glycoprotein 1 man polymer 3056.804 CD4-MIMETIC MINIPROTEIN M48U1 1 syn polymer 221.208 2-acetamido-2-deoxy-beta-D-glucopyranose 8 man non-polymer 22.990 SODIUM ION 6 syn non-polymer 60.095 ISOPROPYL ALCOHOL 5 syn non-polymer 189.100 CITRATE ANION 1 syn non-polymer 18.015 water 377 nat water no no MPMGSLQPLATLYLLGMLVASVLAVWKEATTTLFCASDAKAYDTEVHNVWATHACVPTDPNPQEVKLENVTENFNMWKNN MVEQMHEDIISLWDQSLKPCVKLTGGSVITQACPKVSFEPIPIHYCAPAGFAILKCNDKKFNGTGPCTNVSTVQCTHGIR PVVSTQLLLNGSLAEEEIVIRSENFTNNAKTIIVQLNESVVINCTRPNNGGSGSGGDIRQAHCNLSKTQWENTLEQIAIK LKEQFGNNKTIIFNPSSGGDPEIVTHSFNCGGEFFYCNSTQLFTWNDTRKLNNTGRNITLPCRIKQIINMWQEVGKAMYA PPIRGQIRCSSNITGLLLTRDGGKDTNGTEIFRPGGGDMRDNWRSELYKYKVVKIE MPMGSLQPLATLYLLGMLVASVLAVWKEATTTLFCASDAKAYDTEVHNVWATHACVPTDPNPQEVKLENVTENFNMWKNN MVEQMHEDIISLWDQSLKPCVKLTGGSVITQACPKVSFEPIPIHYCAPAGFAILKCNDKKFNGTGPCTNVSTVQCTHGIR PVVSTQLLLNGSLAEEEIVIRSENFTNNAKTIIVQLNESVVINCTRPNNGGSGSGGDIRQAHCNLSKTQWENTLEQIAIK LKEQFGNNKTIIFNPSSGGDPEIVTHSFNCGGEFFYCNSTQLFTWNDTRKLNNTGRNITLPCRIKQIINMWQEVGKAMYA PPIRGQIRCSSNITGLLLTRDGGKDTNGTEIFRPGGGDMRDNWRSELYKYKVVKIE A polypeptide(L) no yes (MPT)NLHFCQLRCKSLGLLGRCA(DPR)T(U2X)CACV(NH2) XNLHFCQLRCKSLGLLGRCAPTXCACVX R polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n YU2 human sample gp120 11676 Human immunodeficiency virus 1 9606 Homo sapiens plasmid pVRC8400 1 2.34 47.36 5.6 9.0% PEG 4000, 14.0% isopropanol, 100 mM sodium citrate, pH 5.6, VAPOR DIFFUSION, temperature 298K 298 chem_comp database_PDB_caveat entity pdbx_chem_comp_identifier pdbx_entity_nonpoly pdbx_struct_conn_angle pdbx_unobs_or_zero_occ_atoms struct_conn struct_site struct_site_gen repository Initial release Carbohydrate remediation repository Remediation Database references Advisory Data collection Derived calculations Structure summary 1 0 2013-06-12 1 1 2013-07-10 1 2 2020-07-29 _chem_comp.name _chem_comp.type _entity.pdbx_description _pdbx_entity_nonpoly.name _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.value _struct_conn.conn_type_id _struct_conn.id _struct_conn.pdbx_dist_value _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_role _struct_conn.pdbx_value_order _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id DGlcpNAcb N-acetyl-b-D-glucopyranosamine b-D-GlcpNAc GlcNAc 'Crystal structure of CD4-mimetic miniprotein M48U1 in complex with HIV-1 YU2 gp120 in P212121 space group RCSB Y RCSB 2013-04-03 REL REL NAG 2-acetamido-2-deoxy-beta-D-glucopyranose NA SODIUM ION IPA ISOPROPYL ALCOHOL FLC CITRATE ANION HOH water DERIVED FROM SCYLLATOXIN (A SCORPION TOXIN) BY TRANSPLANTING THE GP120-INTERACTIVDERIVED FROM SCYLLATOXIN (A SCORPION TOXIN) BY TRANSPLANTING THE GP120-INTERACTIVE REGION OF CD4 ONTO THE SCYLLATOXIN SCAFFOLD,E REGION OF CD4 ONTO THE SCYLLATOXIN SCAFFOLD, sample THE CD4-MIMETIC MINIPROTEINS INHIBIT HIV-1 ENTRY AND ARE DERIVED FROM SCYLLATOXIN (A SCORPION TOXIN) BY TRANSPLANTING THE GP120-INTERACTIVE REGION OF CD4 ONTO THE SCYLLATOXIN SCAFFOLD, FOLLOWED BY MANY ROUNDS OF ITERATIVE OPTIMIZATION Inhibitor CD4-MIMETIC MINIPROTEIN M48U1 Peptide-like NAG 501 3 NAG NAG 501 A NAG 502 3 NAG NAG 502 A NAG 503 3 NAG NAG 503 A NAG 504 3 NAG NAG 504 A NAG 505 3 NAG NAG 505 A NAG 506 3 NAG NAG 506 A NAG 507 3 NAG NAG 507 A NAG 508 3 NAG NAG 508 A NA 509 4 NA NA 509 A IPA 510 5 IPA IPA 510 A IPA 511 5 IPA IPA 511 A IPA 512 5 IPA IPA 512 A IPA 513 5 IPA IPA 513 A NA 514 4 NA NA 514 A NA 515 4 NA NA 515 A NA 516 4 NA NA 516 A NA 517 4 NA NA 517 A NA 518 4 NA NA 518 A IPA 519 5 IPA IPA 519 A FLC 520 6 FLC FLC 520 A HOH 601 7 HOH HOH 601 A HOH 602 7 HOH HOH 602 A HOH 603 7 HOH HOH 603 A HOH 604 7 HOH HOH 604 A HOH 605 7 HOH HOH 605 A HOH 606 7 HOH HOH 606 A HOH 607 7 HOH HOH 607 A HOH 608 7 HOH HOH 608 A HOH 609 7 HOH HOH 609 A HOH 610 7 HOH HOH 610 A HOH 611 7 HOH HOH 611 A HOH 612 7 HOH HOH 612 A HOH 613 7 HOH HOH 613 A HOH 614 7 HOH HOH 614 A HOH 615 7 HOH HOH 615 A HOH 616 7 HOH HOH 616 A HOH 617 7 HOH HOH 617 A HOH 618 7 HOH HOH 618 A HOH 619 7 HOH HOH 619 A HOH 620 7 HOH HOH 620 A HOH 621 7 HOH HOH 621 A HOH 622 7 HOH HOH 622 A HOH 623 7 HOH HOH 623 A HOH 624 7 HOH HOH 624 A HOH 625 7 HOH HOH 625 A HOH 626 7 HOH HOH 626 A HOH 627 7 HOH HOH 627 A HOH 628 7 HOH HOH 628 A HOH 629 7 HOH HOH 629 A HOH 630 7 HOH HOH 630 A HOH 631 7 HOH HOH 631 A HOH 632 7 HOH HOH 632 A HOH 633 7 HOH HOH 633 A HOH 634 7 HOH HOH 634 A HOH 635 7 HOH HOH 635 A HOH 636 7 HOH HOH 636 A HOH 637 7 HOH HOH 637 A HOH 638 7 HOH HOH 638 A HOH 639 7 HOH HOH 639 A HOH 640 7 HOH HOH 640 A HOH 641 7 HOH HOH 641 A HOH 642 7 HOH HOH 642 A HOH 643 7 HOH HOH 643 A HOH 644 7 HOH HOH 644 A HOH 645 7 HOH HOH 645 A HOH 646 7 HOH HOH 646 A HOH 647 7 HOH HOH 647 A HOH 648 7 HOH HOH 648 A HOH 649 7 HOH HOH 649 A HOH 650 7 HOH HOH 650 A HOH 651 7 HOH HOH 651 A HOH 652 7 HOH HOH 652 A HOH 653 7 HOH HOH 653 A HOH 654 7 HOH HOH 654 A HOH 655 7 HOH HOH 655 A HOH 656 7 HOH HOH 656 A HOH 657 7 HOH HOH 657 A HOH 658 7 HOH HOH 658 A HOH 659 7 HOH HOH 659 A HOH 660 7 HOH HOH 660 A HOH 661 7 HOH HOH 661 A HOH 662 7 HOH HOH 662 A HOH 663 7 HOH HOH 663 A HOH 664 7 HOH HOH 664 A HOH 665 7 HOH HOH 665 A HOH 666 7 HOH HOH 666 A HOH 667 7 HOH HOH 667 A HOH 668 7 HOH HOH 668 A HOH 669 7 HOH HOH 669 A HOH 670 7 HOH HOH 670 A HOH 671 7 HOH HOH 671 A HOH 672 7 HOH HOH 672 A HOH 673 7 HOH HOH 673 A HOH 674 7 HOH HOH 674 A HOH 675 7 HOH HOH 675 A HOH 676 7 HOH HOH 676 A HOH 677 7 HOH HOH 677 A HOH 678 7 HOH HOH 678 A HOH 679 7 HOH HOH 679 A HOH 680 7 HOH HOH 680 A HOH 681 7 HOH HOH 681 A HOH 682 7 HOH HOH 682 A HOH 683 7 HOH HOH 683 A HOH 684 7 HOH HOH 684 A HOH 685 7 HOH HOH 685 A HOH 686 7 HOH HOH 686 A HOH 687 7 HOH HOH 687 A HOH 688 7 HOH HOH 688 A HOH 689 7 HOH HOH 689 A HOH 690 7 HOH HOH 690 A HOH 691 7 HOH HOH 691 A HOH 692 7 HOH HOH 692 A HOH 693 7 HOH HOH 693 A HOH 694 7 HOH HOH 694 A HOH 695 7 HOH HOH 695 A HOH 696 7 HOH HOH 696 A HOH 697 7 HOH HOH 697 A HOH 698 7 HOH HOH 698 A HOH 699 7 HOH HOH 699 A HOH 700 7 HOH HOH 700 A HOH 701 7 HOH HOH 701 A HOH 702 7 HOH HOH 702 A HOH 703 7 HOH HOH 703 A HOH 704 7 HOH HOH 704 A HOH 705 7 HOH HOH 705 A HOH 706 7 HOH HOH 706 A HOH 707 7 HOH HOH 707 A HOH 708 7 HOH HOH 708 A HOH 709 7 HOH HOH 709 A HOH 710 7 HOH HOH 710 A HOH 711 7 HOH HOH 711 A HOH 712 7 HOH HOH 712 A HOH 713 7 HOH HOH 713 A HOH 714 7 HOH HOH 714 A HOH 715 7 HOH HOH 715 A HOH 716 7 HOH HOH 716 A HOH 717 7 HOH HOH 717 A HOH 718 7 HOH HOH 718 A HOH 719 7 HOH HOH 719 A HOH 720 7 HOH HOH 720 A HOH 721 7 HOH HOH 721 A HOH 722 7 HOH HOH 722 A HOH 723 7 HOH HOH 723 A HOH 724 7 HOH HOH 724 A HOH 725 7 HOH HOH 725 A HOH 726 7 HOH HOH 726 A HOH 727 7 HOH HOH 727 A HOH 728 7 HOH HOH 728 A HOH 729 7 HOH HOH 729 A HOH 730 7 HOH HOH 730 A HOH 731 7 HOH HOH 731 A HOH 732 7 HOH HOH 732 A HOH 733 7 HOH HOH 733 A HOH 734 7 HOH HOH 734 A HOH 735 7 HOH HOH 735 A HOH 736 7 HOH HOH 736 A HOH 737 7 HOH HOH 737 A HOH 738 7 HOH HOH 738 A HOH 739 7 HOH HOH 739 A HOH 740 7 HOH HOH 740 A HOH 741 7 HOH HOH 741 A HOH 742 7 HOH HOH 742 A HOH 743 7 HOH HOH 743 A HOH 744 7 HOH HOH 744 A HOH 745 7 HOH HOH 745 A HOH 746 7 HOH HOH 746 A HOH 747 7 HOH HOH 747 A HOH 748 7 HOH HOH 748 A HOH 749 7 HOH HOH 749 A HOH 750 7 HOH HOH 750 A HOH 751 7 HOH HOH 751 A HOH 752 7 HOH HOH 752 A HOH 753 7 HOH HOH 753 A HOH 754 7 HOH HOH 754 A HOH 755 7 HOH HOH 755 A HOH 756 7 HOH HOH 756 A HOH 757 7 HOH HOH 757 A HOH 758 7 HOH HOH 758 A HOH 759 7 HOH HOH 759 A HOH 760 7 HOH HOH 760 A HOH 761 7 HOH HOH 761 A HOH 762 7 HOH HOH 762 A HOH 763 7 HOH HOH 763 A HOH 764 7 HOH HOH 764 A HOH 765 7 HOH HOH 765 A HOH 766 7 HOH HOH 766 A HOH 767 7 HOH HOH 767 A HOH 768 7 HOH HOH 768 A HOH 769 7 HOH HOH 769 A HOH 770 7 HOH HOH 770 A HOH 771 7 HOH HOH 771 A HOH 772 7 HOH HOH 772 A HOH 773 7 HOH HOH 773 A HOH 774 7 HOH HOH 774 A HOH 775 7 HOH HOH 775 A HOH 776 7 HOH HOH 776 A HOH 777 7 HOH HOH 777 A HOH 778 7 HOH HOH 778 A HOH 779 7 HOH HOH 779 A HOH 780 7 HOH HOH 780 A HOH 781 7 HOH HOH 781 A HOH 782 7 HOH HOH 782 A HOH 783 7 HOH HOH 783 A HOH 784 7 HOH HOH 784 A HOH 785 7 HOH HOH 785 A HOH 786 7 HOH HOH 786 A HOH 787 7 HOH HOH 787 A HOH 788 7 HOH HOH 788 A HOH 789 7 HOH HOH 789 A HOH 790 7 HOH HOH 790 A HOH 791 7 HOH HOH 791 A HOH 792 7 HOH HOH 792 A HOH 793 7 HOH HOH 793 A HOH 794 7 HOH HOH 794 A HOH 795 7 HOH HOH 795 A HOH 796 7 HOH HOH 796 A HOH 797 7 HOH HOH 797 A HOH 798 7 HOH HOH 798 A HOH 799 7 HOH HOH 799 A HOH 800 7 HOH HOH 800 A HOH 801 7 HOH HOH 801 A HOH 802 7 HOH HOH 802 A HOH 803 7 HOH HOH 803 A HOH 804 7 HOH HOH 804 A HOH 805 7 HOH HOH 805 A HOH 806 7 HOH HOH 806 A HOH 807 7 HOH HOH 807 A HOH 808 7 HOH HOH 808 A HOH 809 7 HOH HOH 809 A HOH 810 7 HOH HOH 810 A HOH 811 7 HOH HOH 811 A HOH 812 7 HOH HOH 812 A HOH 813 7 HOH HOH 813 A HOH 814 7 HOH HOH 814 A HOH 815 7 HOH HOH 815 A HOH 816 7 HOH HOH 816 A HOH 817 7 HOH HOH 817 A HOH 818 7 HOH HOH 818 A HOH 819 7 HOH HOH 819 A HOH 820 7 HOH HOH 820 A HOH 821 7 HOH HOH 821 A HOH 822 7 HOH HOH 822 A HOH 823 7 HOH HOH 823 A HOH 824 7 HOH HOH 824 A HOH 825 7 HOH HOH 825 A HOH 826 7 HOH HOH 826 A HOH 827 7 HOH HOH 827 A HOH 828 7 HOH HOH 828 A HOH 829 7 HOH HOH 829 A HOH 830 7 HOH HOH 830 A HOH 831 7 HOH HOH 831 A HOH 832 7 HOH HOH 832 A HOH 833 7 HOH HOH 833 A HOH 834 7 HOH HOH 834 A HOH 835 7 HOH HOH 835 A HOH 836 7 HOH HOH 836 A HOH 837 7 HOH HOH 837 A HOH 838 7 HOH HOH 838 A HOH 839 7 HOH HOH 839 A HOH 840 7 HOH HOH 840 A HOH 841 7 HOH HOH 841 A HOH 842 7 HOH HOH 842 A HOH 843 7 HOH HOH 843 A HOH 844 7 HOH HOH 844 A HOH 845 7 HOH HOH 845 A HOH 846 7 HOH HOH 846 A HOH 847 7 HOH HOH 847 A HOH 848 7 HOH HOH 848 A HOH 849 7 HOH HOH 849 A HOH 850 7 HOH HOH 850 A HOH 851 7 HOH HOH 851 A HOH 852 7 HOH HOH 852 A HOH 853 7 HOH HOH 853 A HOH 854 7 HOH HOH 854 A HOH 855 7 HOH HOH 855 A HOH 856 7 HOH HOH 856 A HOH 857 7 HOH HOH 857 A HOH 858 7 HOH HOH 858 A HOH 859 7 HOH HOH 859 A HOH 860 7 HOH HOH 860 A HOH 861 7 HOH HOH 861 A HOH 862 7 HOH HOH 862 A HOH 863 7 HOH HOH 863 A HOH 864 7 HOH HOH 864 A HOH 865 7 HOH HOH 865 A HOH 866 7 HOH HOH 866 A HOH 867 7 HOH HOH 867 A HOH 868 7 HOH HOH 868 A HOH 869 7 HOH HOH 869 A HOH 870 7 HOH HOH 870 A HOH 871 7 HOH HOH 871 A HOH 872 7 HOH HOH 872 A HOH 873 7 HOH HOH 873 A HOH 874 7 HOH HOH 874 A HOH 875 7 HOH HOH 875 A HOH 876 7 HOH HOH 876 A HOH 877 7 HOH HOH 877 A HOH 878 7 HOH HOH 878 A HOH 879 7 HOH HOH 879 A HOH 880 7 HOH HOH 880 A HOH 881 7 HOH HOH 881 A HOH 882 7 HOH HOH 882 A HOH 883 7 HOH HOH 883 A HOH 884 7 HOH HOH 884 A HOH 885 7 HOH HOH 885 A HOH 886 7 HOH HOH 886 A HOH 887 7 HOH HOH 887 A HOH 888 7 HOH HOH 888 A HOH 889 7 HOH HOH 889 A HOH 890 7 HOH HOH 890 A HOH 891 7 HOH HOH 891 A HOH 892 7 HOH HOH 892 A HOH 893 7 HOH HOH 893 A HOH 894 7 HOH HOH 894 A HOH 895 7 HOH HOH 895 A HOH 896 7 HOH HOH 896 A HOH 897 7 HOH HOH 897 A HOH 898 7 HOH HOH 898 A HOH 899 7 HOH HOH 899 A HOH 900 7 HOH HOH 900 A HOH 901 7 HOH HOH 901 A HOH 902 7 HOH HOH 902 A HOH 903 7 HOH HOH 903 A HOH 904 7 HOH HOH 904 A HOH 905 7 HOH HOH 905 A HOH 906 7 HOH HOH 906 A HOH 907 7 HOH HOH 907 A HOH 908 7 HOH HOH 908 A HOH 909 7 HOH HOH 909 A HOH 910 7 HOH HOH 910 A HOH 911 7 HOH HOH 911 A HOH 912 7 HOH HOH 912 A HOH 913 7 HOH HOH 913 A HOH 914 7 HOH HOH 914 A HOH 915 7 HOH HOH 915 A HOH 916 7 HOH HOH 916 A HOH 917 7 HOH HOH 917 A HOH 918 7 HOH HOH 918 A HOH 919 7 HOH HOH 919 A HOH 920 7 HOH HOH 920 A HOH 921 7 HOH HOH 921 A HOH 922 7 HOH HOH 922 A HOH 923 7 HOH HOH 923 A HOH 924 7 HOH HOH 924 A HOH 925 7 HOH HOH 925 A HOH 926 7 HOH HOH 926 A HOH 927 7 HOH HOH 927 A HOH 928 7 HOH HOH 928 A HOH 929 7 HOH HOH 929 A HOH 930 7 HOH HOH 930 A HOH 931 7 HOH HOH 931 A HOH 932 7 HOH HOH 932 A HOH 933 7 HOH HOH 933 A HOH 934 7 HOH HOH 934 A HOH 935 7 HOH HOH 935 A HOH 936 7 HOH HOH 936 A HOH 937 7 HOH HOH 937 A HOH 938 7 HOH HOH 938 A HOH 939 7 HOH HOH 939 A HOH 940 7 HOH HOH 940 A HOH 941 7 HOH HOH 941 A HOH 942 7 HOH HOH 942 A HOH 943 7 HOH HOH 943 A HOH 944 7 HOH HOH 944 A HOH 945 7 HOH HOH 945 A HOH 946 7 HOH HOH 946 A HOH 947 7 HOH HOH 947 A HOH 948 7 HOH HOH 948 A HOH 949 7 HOH HOH 949 A HOH 950 7 HOH HOH 950 A HOH 951 7 HOH HOH 951 A HOH 952 7 HOH HOH 952 A HOH 953 7 HOH HOH 953 A HOH 954 7 HOH HOH 954 A HOH 955 7 HOH HOH 955 A HOH 956 7 HOH HOH 956 A HOH 957 7 HOH HOH 957 A HOH 958 7 HOH HOH 958 A HOH 959 7 HOH HOH 959 A HOH 960 7 HOH HOH 960 A HOH 101 7 HOH HOH 101 R HOH 102 7 HOH HOH 102 R HOH 103 7 HOH HOH 103 R HOH 104 7 HOH HOH 104 R HOH 105 7 HOH HOH 105 R HOH 106 7 HOH HOH 106 R HOH 107 7 HOH HOH 107 R HOH 108 7 HOH HOH 108 R HOH 109 7 HOH HOH 109 R HOH 110 7 HOH HOH 110 R HOH 111 7 HOH HOH 111 R HOH 112 7 HOH HOH 112 R HOH 113 7 HOH HOH 113 R HOH 114 7 HOH HOH 114 R HOH 115 7 HOH HOH 115 R HOH 116 7 HOH HOH 116 R HOH 117 7 HOH HOH 117 R n 1 20 A n 2 21 A n 3 22 A n 4 23 A n 5 24 A n 6 25 A n 7 26 A n 8 27 A n 9 28 A n 10 29 A n 11 30 A n 12 31 A n 13 32 A n 14 33 A n 15 34 A n 16 35 A n 17 36 A n 18 37 A n 19 38 A n 20 39 A n 21 40 A n 22 41 A n 23 42 A n 24 43 A VAL 44 n 25 VAL 44 A TRP 45 n 26 TRP 45 A LYS 46 n 27 LYS 46 A GLU 47 n 28 GLU 47 A ALA 48 n 29 ALA 48 A THR 49 n 30 THR 49 A THR 50 n 31 THR 50 A THR 51 n 32 THR 51 A LEU 52 n 33 LEU 52 A PHE 53 n 34 PHE 53 A CYS 54 n 35 CYS 54 A ALA 55 n 36 ALA 55 A SER 56 n 37 SER 56 A ASP 57 n 38 ASP 57 A ALA 58 n 39 ALA 58 A LYS 59 n 40 LYS 59 A ALA 60 n 41 ALA 60 A TYR 61 n 42 TYR 61 A ASP 62 n 43 ASP 62 A THR 63 n 44 THR 63 A GLU 64 n 45 GLU 64 A VAL 65 n 46 VAL 65 A HIS 66 n 47 HIS 66 A ASN 67 n 48 ASN 67 A VAL 68 n 49 VAL 68 A TRP 69 n 50 TRP 69 A ALA 70 n 51 ALA 70 A THR 71 n 52 THR 71 A HIS 72 n 53 HIS 72 A ALA 73 n 54 ALA 73 A CYS 74 n 55 CYS 74 A VAL 75 n 56 VAL 75 A PRO 76 n 57 PRO 76 A THR 77 n 58 THR 77 A ASP 78 n 59 ASP 78 A PRO 79 n 60 PRO 79 A ASN 80 n 61 ASN 80 A PRO 81 n 62 PRO 81 A GLN 82 n 63 GLN 82 A GLU 83 n 64 GLU 83 A VAL 84 n 65 VAL 84 A LYS 85 n 66 LYS 85 A LEU 86 n 67 LEU 86 A GLU 87 n 68 GLU 87 A ASN 88 n 69 ASN 88 A VAL 89 n 70 VAL 89 A THR 90 n 71 THR 90 A GLU 91 n 72 GLU 91 A ASN 92 n 73 ASN 92 A PHE 93 n 74 PHE 93 A ASN 94 n 75 ASN 94 A MET 95 n 76 MET 95 A TRP 96 n 77 TRP 96 A LYS 97 n 78 LYS 97 A ASN 98 n 79 ASN 98 A ASN 99 n 80 ASN 99 A MET 100 n 81 MET 100 A VAL 101 n 82 VAL 101 A GLU 102 n 83 GLU 102 A GLN 103 n 84 GLN 103 A MET 104 n 85 MET 104 A HIS 105 n 86 HIS 105 A GLU 106 n 87 GLU 106 A ASP 107 n 88 ASP 107 A ILE 108 n 89 ILE 108 A ILE 109 n 90 ILE 109 A SER 110 n 91 SER 110 A LEU 111 n 92 LEU 111 A TRP 112 n 93 TRP 112 A ASP 113 n 94 ASP 113 A GLN 114 n 95 GLN 114 A SER 115 n 96 SER 115 A LEU 116 n 97 LEU 116 A LYS 117 n 98 LYS 117 A PRO 118 n 99 PRO 118 A CYS 119 n 100 CYS 119 A VAL 120 n 101 VAL 120 A LYS 121 n 102 LYS 121 A LEU 122 n 103 LEU 122 A THR 123 n 104 THR 123 A GLY 124 n 105 GLY 124 A GLY 198 n 106 GLY 198 A SER 199 n 107 SER 199 A VAL 200 n 108 VAL 200 A ILE 201 n 109 ILE 201 A THR 202 n 110 THR 202 A GLN 203 n 111 GLN 203 A ALA 204 n 112 ALA 204 A CYS 205 n 113 CYS 205 A PRO 206 n 114 PRO 206 A LYS 207 n 115 LYS 207 A VAL 208 n 116 VAL 208 A SER 209 n 117 SER 209 A PHE 210 n 118 PHE 210 A GLU 211 n 119 GLU 211 A PRO 212 n 120 PRO 212 A ILE 213 n 121 ILE 213 A PRO 214 n 122 PRO 214 A ILE 215 n 123 ILE 215 A HIS 216 n 124 HIS 216 A TYR 217 n 125 TYR 217 A CYS 218 n 126 CYS 218 A ALA 219 n 127 ALA 219 A PRO 220 n 128 PRO 220 A ALA 221 n 129 ALA 221 A GLY 222 n 130 GLY 222 A PHE 223 n 131 PHE 223 A ALA 224 n 132 ALA 224 A ILE 225 n 133 ILE 225 A LEU 226 n 134 LEU 226 A LYS 227 n 135 LYS 227 A CYS 228 n 136 CYS 228 A ASN 229 n 137 ASN 229 A ASP 230 n 138 ASP 230 A LYS 231 n 139 LYS 231 A LYS 232 n 140 LYS 232 A PHE 233 n 141 PHE 233 A ASN 234 n 142 ASN 234 A GLY 235 n 143 GLY 235 A THR 236 n 144 THR 236 A GLY 237 n 145 GLY 237 A PRO 238 n 146 PRO 238 A CYS 239 n 147 CYS 239 A THR 240 n 148 THR 240 A ASN 241 n 149 ASN 241 A VAL 242 n 150 VAL 242 A SER 243 n 151 SER 243 A THR 244 n 152 THR 244 A VAL 245 n 153 VAL 245 A GLN 246 n 154 GLN 246 A CYS 247 n 155 CYS 247 A THR 248 n 156 THR 248 A HIS 249 n 157 HIS 249 A GLY 250 n 158 GLY 250 A ILE 251 n 159 ILE 251 A ARG 252 n 160 ARG 252 A PRO 253 n 161 PRO 253 A VAL 254 n 162 VAL 254 A VAL 255 n 163 VAL 255 A SER 256 n 164 SER 256 A THR 257 n 165 THR 257 A GLN 258 n 166 GLN 258 A LEU 259 n 167 LEU 259 A LEU 260 n 168 LEU 260 A LEU 261 n 169 LEU 261 A ASN 262 n 170 ASN 262 A GLY 263 n 171 GLY 263 A SER 264 n 172 SER 264 A LEU 265 n 173 LEU 265 A ALA 266 n 174 ALA 266 A GLU 267 n 175 GLU 267 A GLU 268 n 176 GLU 268 A GLU 269 n 177 GLU 269 A ILE 270 n 178 ILE 270 A VAL 271 n 179 VAL 271 A ILE 272 n 180 ILE 272 A ARG 273 n 181 ARG 273 A SER 274 n 182 SER 274 A GLU 275 n 183 GLU 275 A ASN 276 n 184 ASN 276 A PHE 277 n 185 PHE 277 A THR 278 n 186 THR 278 A ASN 279 n 187 ASN 279 A ASN 280 n 188 ASN 280 A ALA 281 n 189 ALA 281 A LYS 282 n 190 LYS 282 A THR 283 n 191 THR 283 A ILE 284 n 192 ILE 284 A ILE 285 n 193 ILE 285 A VAL 286 n 194 VAL 286 A GLN 287 n 195 GLN 287 A LEU 288 n 196 LEU 288 A ASN 289 n 197 ASN 289 A GLU 290 n 198 GLU 290 A SER 291 n 199 SER 291 A VAL 292 n 200 VAL 292 A VAL 293 n 201 VAL 293 A ILE 294 n 202 ILE 294 A ASN 295 n 203 ASN 295 A CYS 296 n 204 CYS 296 A THR 297 n 205 THR 297 A ARG 298 n 206 ARG 298 A PRO 299 n 207 PRO 299 A ASN 300 n 208 ASN 300 A ASN 301 n 209 ASN 301 A n 210 318 A n 211 319 A n 212 320 A n 213 321 A n 214 322 A n 215 323 A n 216 324 A ASP 325 n 217 ASP 325 A ILE 326 n 218 ILE 326 A ARG 327 n 219 ARG 327 A GLN 328 n 220 GLN 328 A ALA 329 n 221 ALA 329 A HIS 330 n 222 HIS 330 A CYS 331 n 223 CYS 331 A ASN 332 n 224 ASN 332 A LEU 333 n 225 LEU 333 A SER 334 n 226 SER 334 A LYS 335 n 227 LYS 335 A THR 336 n 228 THR 336 A GLN 337 n 229 GLN 337 A TRP 338 n 230 TRP 338 A GLU 339 n 231 GLU 339 A ASN 340 n 232 ASN 340 A THR 341 n 233 THR 341 A LEU 342 n 234 LEU 342 A GLU 343 n 235 GLU 343 A GLN 344 n 236 GLN 344 A ILE 345 n 237 ILE 345 A ALA 346 n 238 ALA 346 A ILE 347 n 239 ILE 347 A LYS 348 n 240 LYS 348 A LEU 349 n 241 LEU 349 A LYS 350 n 242 LYS 350 A GLU 351 n 243 GLU 351 A GLN 352 n 244 GLN 352 A PHE 353 n 245 PHE 353 A GLY 354 n 246 GLY 354 A ASN 355 n 247 ASN 355 A ASN 356 n 248 ASN 356 A LYS 357 n 249 LYS 357 A THR 358 n 250 THR 358 A ILE 359 n 251 ILE 359 A ILE 360 n 252 ILE 360 A PHE 361 n 253 PHE 361 A ASN 362 n 254 ASN 362 A PRO 363 n 255 PRO 363 A SER 364 n 256 SER 364 A SER 365 n 257 SER 365 A GLY 366 n 258 GLY 366 A GLY 367 n 259 GLY 367 A ASP 368 n 260 ASP 368 A PRO 369 n 261 PRO 369 A GLU 370 n 262 GLU 370 A ILE 371 n 263 ILE 371 A VAL 372 n 264 VAL 372 A THR 373 n 265 THR 373 A HIS 374 n 266 HIS 374 A SER 375 n 267 SER 375 A PHE 376 n 268 PHE 376 A ASN 377 n 269 ASN 377 A CYS 378 n 270 CYS 378 A GLY 379 n 271 GLY 379 A GLY 380 n 272 GLY 380 A GLU 381 n 273 GLU 381 A PHE 382 n 274 PHE 382 A PHE 383 n 275 PHE 383 A TYR 384 n 276 TYR 384 A CYS 385 n 277 CYS 385 A ASN 386 n 278 ASN 386 A SER 387 n 279 SER 387 A THR 388 n 280 THR 388 A GLN 389 n 281 GLN 389 A LEU 390 n 282 LEU 390 A PHE 391 n 283 PHE 391 A THR 392 n 284 THR 392 A TRP 393 n 285 TRP 393 A ASN 394 n 286 ASN 394 A ASP 395 n 287 ASP 395 A THR 396 n 288 THR 396 A n 289 405 A n 290 406 A n 291 407 A n 292 408 A n 293 409 A n 294 410 A GLY 411 n 295 GLY 411 A ARG 412 n 296 ARG 412 A ASN 413 n 297 ASN 413 A ILE 414 n 298 ILE 414 A THR 415 n 299 THR 415 A LEU 416 n 300 LEU 416 A PRO 417 n 301 PRO 417 A CYS 418 n 302 CYS 418 A ARG 419 n 303 ARG 419 A ILE 420 n 304 ILE 420 A LYS 421 n 305 LYS 421 A GLN 422 n 306 GLN 422 A ILE 423 n 307 ILE 423 A ILE 424 n 308 ILE 424 A ASN 425 n 309 ASN 425 A MET 426 n 310 MET 426 A TRP 427 n 311 TRP 427 A GLN 428 n 312 GLN 428 A GLU 429 n 313 GLU 429 A VAL 430 n 314 VAL 430 A GLY 431 n 315 GLY 431 A LYS 432 n 316 LYS 432 A ALA 433 n 317 ALA 433 A MET 434 n 318 MET 434 A TYR 435 n 319 TYR 435 A ALA 436 n 320 ALA 436 A PRO 437 n 321 PRO 437 A PRO 438 n 322 PRO 438 A ILE 439 n 323 ILE 439 A ARG 440 n 324 ARG 440 A GLY 441 n 325 GLY 441 A GLN 442 n 326 GLN 442 A ILE 443 n 327 ILE 443 A ARG 444 n 328 ARG 444 A CYS 445 n 329 CYS 445 A SER 446 n 330 SER 446 A SER 447 n 331 SER 447 A ASN 448 n 332 ASN 448 A ILE 449 n 333 ILE 449 A THR 450 n 334 THR 450 A GLY 451 n 335 GLY 451 A LEU 452 n 336 LEU 452 A LEU 453 n 337 LEU 453 A LEU 454 n 338 LEU 454 A THR 455 n 339 THR 455 A ARG 456 n 340 ARG 456 A ASP 457 n 341 ASP 457 A GLY 458 n 342 GLY 458 A GLY 459 n 343 GLY 459 A n 344 460 A n 345 461 A n 346 462 A ASN 463 n 347 ASN 463 A GLY 464 n 348 GLY 464 A THR 465 n 349 THR 465 A GLU 466 n 350 GLU 466 A ILE 467 n 351 ILE 467 A PHE 468 n 352 PHE 468 A ARG 469 n 353 ARG 469 A PRO 470 n 354 PRO 470 A GLY 471 n 355 GLY 471 A GLY 472 n 356 GLY 472 A GLY 473 n 357 GLY 473 A ASP 474 n 358 ASP 474 A MET 475 n 359 MET 475 A ARG 476 n 360 ARG 476 A ASP 477 n 361 ASP 477 A ASN 478 n 362 ASN 478 A TRP 479 n 363 TRP 479 A ARG 480 n 364 ARG 480 A SER 481 n 365 SER 481 A GLU 482 n 366 GLU 482 A LEU 483 n 367 LEU 483 A TYR 484 n 368 TYR 484 A LYS 485 n 369 LYS 485 A TYR 486 n 370 TYR 486 A LYS 487 n 371 LYS 487 A VAL 488 n 372 VAL 488 A VAL 489 n 373 VAL 489 A LYS 490 n 374 LYS 490 A ILE 491 n 375 ILE 491 A GLU 492 n 376 GLU 492 A MPT 1 n 1 MPT 1 R ASN 2 n 2 ASN 2 R LEU 3 n 3 LEU 3 R HIS 4 n 4 HIS 4 R PHE 5 n 5 PHE 5 R CYS 6 n 6 CYS 6 R GLN 7 n 7 GLN 7 R LEU 8 n 8 LEU 8 R ARG 9 n 9 ARG 9 R CYS 10 n 10 CYS 10 R LYS 11 n 11 LYS 11 R SER 12 n 12 SER 12 R LEU 13 n 13 LEU 13 R GLY 14 n 14 GLY 14 R LEU 15 n 15 LEU 15 R LEU 16 n 16 LEU 16 R GLY 17 n 17 GLY 17 R ARG 18 n 18 ARG 18 R CYS 19 n 19 CYS 19 R ALA 20 n 20 ALA 20 R DPR 21 n 21 DPR 21 R THR 22 n 22 THR 22 R U2X 23 n 23 U2X 23 R CYS 24 n 24 CYS 24 R ALA 25 n 25 ALA 25 R CYS 26 n 26 CYS 26 R VAL 27 n 27 VAL 27 R NH2 28 n 28 NH2 28 R 1.1596 0.0713 0.0447 1.2786 0.3669 1.3126 -0.0736 -0.0346 -0.1268 0.0373 0.0449 -0.0100 0.0689 0.0867 0.0256 0.1337 0.0137 0.0238 0.1255 0.0169 0.0992 refined -23.9526 23.7048 0.9540 X-RAY DIFFRACTION 5.9126 -0.6204 -4.0487 1.6070 0.2425 2.7942 -0.1221 0.6934 0.1011 -0.7975 0.1159 -0.4732 -0.1806 1.0156 0.0075 0.4322 -0.1332 0.1060 0.6146 -0.0113 0.2444 refined -11.0387 31.8623 -14.6824 X-RAY DIFFRACTION X-RAY DIFFRACTION 1 chain A X-RAY DIFFRACTION 2 chain R author_defined_assembly 2 dimeric A PRO 253 A O PRO 161 1_555 A NA 516 R NA NA 1_555 A HOH 604 W O HOH 1_555 78.8 A SER 256 A OG SER 164 1_555 A NA 514 P NA NA 1_555 A HOH 852 W O HOH 1_555 115.8 A VAL 372 A O VAL 264 1_555 A NA 509 K NA NA 1_555 A HOH 713 W O HOH 1_555 94.4 A ASN 377 A O ASN 269 1_555 A NA 517 S NA NA 1_555 A NAG 504 F O7 NAG 1_555 102.5 A ASN 377 A O ASN 269 1_555 A NA 517 S NA NA 1_555 A HOH 604 W O HOH 1_555 117.3 A NAG 504 F O7 NAG 1_555 A NA 517 S NA NA 1_555 A HOH 604 W O HOH 1_555 139.6 A ASN 377 A O ASN 269 1_555 A NA 517 S NA NA 1_555 A HOH 621 W O HOH 1_555 71.3 A NAG 504 F O7 NAG 1_555 A NA 517 S NA NA 1_555 A HOH 621 W O HOH 1_555 112.9 A HOH 604 W O HOH 1_555 A NA 517 S NA NA 1_555 A HOH 621 W O HOH 1_555 76.1 A HOH 713 W O HOH 1_555 A NA 515 Q NA NA 1_555 A HOH 784 W O HOH 1_555 98.4 A ASN 262 GLYCOSYLATION SITE A ASN 170 ASN A ASN 386 GLYCOSYLATION SITE A ASN 278 ASN A ASN 295 GLYCOSYLATION SITE A ASN 203 ASN A ASN 234 GLYCOSYLATION SITE A ASN 142 ASN A ASN 448 GLYCOSYLATION SITE A ASN 332 ASN A ASN 276 GLYCOSYLATION SITE A ASN 184 ASN A ASN 289 GLYCOSYLATION SITE A ASN 197 ASN A ASN 241 GLYCOSYLATION SITE A ASN 149 ASN R U2X 23 O-(CYCLOHEXYLMETHYL)-L-TYROSINE B U2X 23 TYR 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N LYS 46 A N LYS 27 A O LYS 490 A O LYS 374 A O LYS 487 A O LYS 371 A N LEU 226 A N LEU 134 A N LYS 227 A N LYS 135 A O SER 243 A O SER 151 A O THR 244 A O THR 152 A N VAL 84 A N VAL 65 A O VAL 75 A O VAL 56 A N CYS 54 A N CYS 35 A N PHE 53 A N PHE 34 A O CYS 218 A O CYS 126 A N GLU 91 A N GLU 72 A O CYS 239 A O CYS 147 A O ILE 201 A O ILE 109 A N LYS 121 A N LYS 102 A N LEU 122 A N LEU 103 A O LYS 432 A O LYS 316 A O ALA 433 A O ALA 317 A N ILE 424 A N ILE 308 A N LEU 260 A N LEU 168 A O THR 450 A O THR 334 A O CYS 445 A O CYS 329 A N CYS 296 A N CYS 204 A O PHE 468 A O PHE 352 A N ILE 360 A N ILE 252 A N VAL 271 A N VAL 179 A O GLN 287 A O GLN 195 A N CYS 296 A N CYS 204 A O CYS 445 A O CYS 329 A N CYS 331 A N CYS 223 A O LEU 416 A O LEU 300 A O ARG 419 A O ARG 303 A N TYR 384 A N TYR 276 A O CYS 385 A O CYS 277 A N HIS 374 A N HIS 266 R N ALA 20 B N ALA 20 R O U2X 23 B O U2X 23 1 A HOH 874 W HOH 1 A CB THR 396 A CB THR 288 1 Y 1 A OG1 THR 396 A OG1 THR 288 1 Y 1 A CG2 THR 396 A CG2 THR 288 1 Y 1 A CG ASN 463 A CG ASN 347 1 Y 1 A OD1 ASN 463 A OD1 ASN 347 1 Y 1 A ND2 ASN 463 A ND2 ASN 347 1 Y 1 A MET 20 A MET 1 1 Y 1 A PRO 21 A PRO 2 1 Y 1 A MET 22 A MET 3 1 Y 1 A GLY 23 A GLY 4 1 Y 1 A SER 24 A SER 5 1 Y 1 A LEU 25 A LEU 6 1 Y 1 A GLN 26 A GLN 7 1 Y 1 A PRO 27 A PRO 8 1 Y 1 A LEU 28 A LEU 9 1 Y 1 A ALA 29 A ALA 10 1 Y 1 A THR 30 A THR 11 1 Y 1 A LEU 31 A LEU 12 1 Y 1 A TYR 32 A TYR 13 1 Y 1 A LEU 33 A LEU 14 1 Y 1 A LEU 34 A LEU 15 1 Y 1 A GLY 35 A GLY 16 1 Y 1 A MET 36 A MET 17 1 Y 1 A LEU 37 A LEU 18 1 Y 1 A VAL 38 A VAL 19 1 Y 1 A ALA 39 A ALA 20 1 Y 1 A SER 40 A SER 21 1 Y 1 A VAL 41 A VAL 22 1 Y 1 A LEU 42 A LEU 23 1 Y 1 A ALA 43 A ALA 24 1 Y 1 A GLY 318 A GLY 210 1 Y 1 A GLY 319 A GLY 211 1 Y 1 A SER 320 A SER 212 1 Y 1 A GLY 321 A GLY 213 1 Y 1 A SER 322 A SER 214 1 Y 1 A GLY 323 A GLY 215 1 Y 1 A GLY 324 A GLY 216 1 Y 1 A ARG 405 A ARG 289 1 Y 1 A LYS 406 A LYS 290 1 Y 1 A LEU 407 A LEU 291 1 Y 1 A ASN 408 A ASN 292 1 Y 1 A ASN 409 A ASN 293 1 Y 1 A THR 410 A THR 294 1 Y 1 A LYS 460 A LYS 344 1 Y 1 A ASP 461 A ASP 345 1 Y 1 A THR 462 A THR 346 1 Y 1 A A O O HOH HOH 946 959 1.84 1 A A OE1 O GLU HOH 102 916 1.85 1 A A O O HOH HOH 882 946 1.87 1 A A O2 O IPA HOH 519 952 1.95 1 A A O O HOH HOH 901 952 1.98 1 A A O O HOH HOH 924 931 1.99 1 A A O O HOH HOH 900 935 2.01 1 A A O O HOH HOH 842 896 2.02 1 A A O O HOH HOH 897 899 2.03 1 R R OE1 O GLN HOH 7 109 2.05 1 R R O O VAL HOH 27 116 2.06 1 A A OE1 O GLU HOH 429 910 2.09 1 R R NZ O LYS HOH 11 113 2.12 B 1 A A NZ O LYS HOH 85 915 2.14 1 A A O O HOH HOH 921 922 2.16 1 A A O O HOH HOH 794 819 2.18 1 A A ND2 C2 ASN NAG 234 502 2.19 1 A A OD1 O ASP HOH 325 919 2.19 1 A GLN 258 71.27 -59.33 1 A GLU 268 -110.39 -97.65 1 A ASN 276 -167.16 98.95 21.55 0.189 0.167 0.168 1.49 35.26 3446 67985 5.070 99.1 0.140 1 Isotropic 1.330 MOLECULAR REPLACEMENT 19.060 0.90 1.11 ML FLAT BULK SOLVENT MODEL 1.49 35.26 377 3371 151 0 2843 0.006 3234 1.191 4403 13.243 1247 0.064 508 0.005 552 0.2524 0.2693 1.5116 137 2308 90.00 0.2555 0.2466 1.5332 127 2517 97.00 0.2390 0.2350 1.5561 136 2512 98.00 0.2598 0.2225 1.5804 126 2536 99.00 0.2226 0.2040 1.6064 132 2542 99.00 0.2314 0.1970 1.6340 131 2568 99.00 0.2323 0.1945 1.6638 149 2589 100.00 0.2037 0.1902 1.6958 142 2542 99.00 0.1987 0.1903 1.7304 134 2564 100.00 0.2106 0.1857 1.7680 139 2584 100.00 0.2113 0.1722 1.8091 150 2573 100.00 0.1986 0.1727 1.8544 132 2582 100.00 0.2128 0.1758 1.9045 148 2570 100.00 0.1976 0.1744 1.9605 135 2606 100.00 0.1801 0.1634 2.0238 117 2609 100.00 0.1940 0.1576 2.0961 133 2590 100.00 0.1726 0.1600 2.1800 140 2607 100.00 0.1853 0.1588 2.2793 138 2603 100.00 0.1539 0.1596 2.3994 141 2608 100.00 0.2021 0.1662 2.5497 126 2621 100.00 0.2005 0.1694 2.7465 151 2618 100.00 0.1817 0.1650 3.0227 128 2641 100.00 0.1650 0.1604 3.4598 131 2661 100.00 0.1710 0.1441 4.3577 163 2653 100.00 0.2010 0.1695 35.2691 160 2735 99.00 21.55 1.490 50.000 4JZZ 68096 2.000 0.11700 1 20.5000 7.600 93.0 1.49 1.52 2.100 0.58500 1 3.50 93.0 data collection HKL-2000 phasing PHASER refinement PHENIX (phenix.refine: 1.8.2_1309) data reduction HKL-2000 data scaling HKL-2000 HIV-1 YU2 gp120 glycoprotein, CD4-MIMETIC MINIPROTEIN M48U1 Crystal structure of CD4-mimetic miniprotein M48U1 in complex with HIV-1 YU2 gp120 in C2221 space group 1 N N 2 N N 3 N N 3 N N 3 N N 3 N N 3 N N 3 N N 3 N N 3 N N 4 N N 5 N N 5 N N 5 N N 5 N N 4 N N 4 N N 4 N N 4 N N 4 N N 5 N N 6 N N 7 N N 7 N N A GLU 64 A GLU 45 HELX_P A ALA 73 A ALA 54 1 1 10 A ASN 98 A ASN 79 HELX_P A LEU 116 A LEU 97 1 2 19 A LYS 335 A LYS 227 HELX_P A GLY 354 A GLY 246 1 3 20 A ASP 368 A ASP 260 HELX_P A THR 373 A THR 265 1 4 6 A SER 387 A SER 279 HELX_P A PHE 391 A PHE 283 5 5 5 A ASP 474 A ASP 358 HELX_P A TYR 484 A TYR 368 1 6 11 R ASN 2 B ASN 2 HELX_P R LYS 11 B LYS 11 1 7 10 R SER 12 B SER 12 HELX_P R GLY 14 B GLY 14 5 8 3 disulf 2.057 A A CYS 54 A SG CYS 35 1_555 A CYS 74 A SG CYS 55 1_555 disulf 2.039 A A CYS 119 A SG CYS 100 1_555 A CYS 205 A SG CYS 113 1_555 disulf 2.052 A A A CYS 218 A SG CYS 126 1_555 A CYS 247 A SG CYS 155 1_555 disulf 2.054 A A A CYS 228 A SG CYS 136 1_555 A CYS 239 A SG CYS 147 1_555 disulf 2.052 A CYS 296 A SG CYS 204 1_555 A CYS 331 A SG CYS 223 1_555 disulf 2.050 A A CYS 378 A SG CYS 270 1_555 A CYS 445 A SG CYS 329 1_555 disulf 2.043 A A A CYS 385 A SG CYS 277 1_555 A CYS 418 A SG CYS 302 1_555 disulf 2.114 R MPT 1 B SG MPT 1 1_555 R CYS 19 B SG CYS 19 1_555 disulf 2.057 R CYS 6 B SG CYS 6 1_555 R CYS 24 B SG CYS 24 1_555 disulf 2.042 R CYS 10 B SG CYS 10 1_555 R CYS 26 B SG CYS 26 1_555 covale 1.440 one N-Glycosylation A ASN 234 A ND2 ASN 142 1_555 A NAG 502 D C1 NAG 1_555 covale 1.447 one N-Glycosylation A ASN 241 A ND2 ASN 149 1_555 A NAG 503 E C1 NAG 1_555 covale 1.437 one N-Glycosylation A ASN 262 A ND2 ASN 170 1_555 A NAG 504 F C1 NAG 1_555 covale 1.445 one N-Glycosylation A ASN 276 A ND2 ASN 184 1_555 A NAG 501 C C1 NAG 1_555 covale 1.447 one N-Glycosylation A ASN 289 A ND2 ASN 197 1_555 A NAG 505 G C1 NAG 1_555 covale 1.439 one N-Glycosylation A ASN 295 A ND2 ASN 203 1_555 A NAG 506 H C1 NAG 1_555 covale 1.438 one B N-Glycosylation A ASN 386 A ND2 ASN 278 1_555 A NAG 507 I C1 NAG 1_555 covale 1.442 one A N-Glycosylation A ASN 386 A ND2 ASN 278 1_555 A NAG 507 I C1 NAG 1_555 covale 1.442 one N-Glycosylation A ASN 448 A ND2 ASN 332 1_555 A NAG 508 J C1 NAG 1_555 covale 1.378 both sing R MPT 1 B C MPT 1 1_555 R ASN 2 B N ASN 2 1_555 covale 2.114 none R MPT 1 B SG MPT 1 1_555 R CYS 19 B SG CYS 19 1_555 covale 1.315 both sing R ALA 20 B C ALA 20 1_555 R DPR 21 B N DPR 21 1_555 covale 1.315 both sing R DPR 21 B C DPR 21 1_555 R THR 22 B N THR 22 1_555 covale 1.342 both sing R THR 22 B C THR 22 1_555 R U2X 23 B N U2X 23 1_555 covale 1.313 both sing R U2X 23 B C U2X 23 1_555 R CYS 24 B N CYS 24 1_555 covale 1.430 both sing R VAL 27 B C VAL 27 1_555 R NH2 28 B N NH2 28 1_555 metalc 2.723 A PRO 253 A O PRO 161 1_555 A NA 516 R NA NA 1_555 metalc 2.751 A SER 256 A OG SER 164 1_555 A NA 514 P NA NA 1_555 metalc 2.801 A VAL 372 A O VAL 264 1_555 A NA 509 K NA NA 1_555 metalc 2.925 A ASN 377 A O ASN 269 1_555 A NA 517 S NA NA 1_555 metalc 2.825 A NAG 504 F O7 NAG 1_555 A NA 517 S NA NA 1_555 metalc 2.834 A NA 509 K NA NA 1_555 A HOH 713 W O HOH 1_555 metalc 2.735 A NA 514 P NA NA 1_555 A HOH 852 W O HOH 1_555 metalc 2.599 A NA 515 Q NA NA 1_555 A HOH 713 W O HOH 1_555 metalc 2.807 A NA 515 Q NA NA 1_555 A HOH 784 W O HOH 1_555 metalc 2.872 A NA 516 R NA NA 1_555 A HOH 604 W O HOH 1_555 metalc 2.819 A NA 517 S NA NA 1_555 A HOH 604 W O HOH 1_555 metalc 2.807 A NA 517 S NA NA 1_555 A HOH 621 W O HOH 1_555 metalc 2.206 A NA 518 T NA NA 1_555 A HOH 875 W O HOH 1_555 VIRAL PROTEIN/INHIBITOR HIV-1 attachment protein gp120, HIV-1 envelope, VIRAL PROTEIN-INHIBITOR complex 4JZZ PDB 1 4JZZ 4JZZ PDB 2 4JZZ 20 492 4JZZ 20 492 4JZZ A 1 1 376 1 28 4JZZ 1 28 4JZZ R 2 1 28 5 3 2 4 5 7 2 anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A LYS 46 A LYS 27 A GLU 47 A GLU 28 A TYR 486 A TYR 370 A LYS 490 A LYS 374 A PHE 223 A PHE 131 A CYS 228 A CYS 136 A VAL 242 A VAL 150 A VAL 245 A VAL 153 A GLU 83 A GLU 64 A LYS 85 A LYS 66 A CYS 74 A CYS 55 A PRO 76 A PRO 57 A PHE 53 A PHE 34 A SER 56 A SER 37 A HIS 216 A HIS 124 A CYS 218 A CYS 126 A GLU 91 A GLU 72 A ASN 94 A ASN 75 A THR 236 A THR 144 A CYS 239 A CYS 147 A SER 199 A SER 107 A THR 202 A THR 110 A VAL 120 A VAL 101 A THR 123 A THR 104 A LYS 432 A LYS 316 A MET 434 A MET 318 A ILE 423 A ILE 307 A ASN 425 A ASN 309 A LEU 259 A LEU 167 A LEU 261 A LEU 169 A ILE 443 A ILE 327 A ARG 456 A ARG 340 A ILE 284 A ILE 192 A ARG 298 A ARG 206 A THR 465 A THR 349 A PRO 470 A PRO 354 A THR 358 A THR 250 A PHE 361 A PHE 253 A VAL 271 A VAL 179 A ARG 273 A ARG 181 A ILE 284 A ILE 192 A ARG 298 A ARG 206 A ILE 443 A ILE 327 A ARG 456 A ARG 340 A GLN 328 A GLN 220 A SER 334 A SER 226 A ASN 413 A ASN 297 A LYS 421 A LYS 305 A GLU 381 A GLU 273 A CYS 385 A CYS 277 A HIS 374 A HIS 266 A CYS 378 A CYS 270 R GLY 17 B GLY 17 R ALA 20 B ALA 20 R U2X 23 B U2X 23 R CYS 26 B CYS 26 20 C 2 2 21