0.006073 0.003506 0.000000 0.000000 0.007013 0.000000 0.000000 0.000000 0.002554 0.00000 0.00000 0.00000 Huang, M.D. Xu, X. Yuan, C. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 18 90.00 90.00 120.00 164.659 164.659 391.582 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C6 H12 O6 180.156 alpha-D-mannopyranose alpha-D-mannose; D-mannose; mannose D-saccharide, alpha linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C8 H15 N O6 221.208 2-acetamido-2-deoxy-beta-D-glucopyranose N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE D-saccharide, beta linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C Y 142 N C Y 143 N N Y 144 N C Y 145 N C Y 146 N N N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N N N 159 S C N 160 N C N 161 N O N 162 S C N 163 N C N 164 N C N 165 N C N 166 N O N 167 N H N 168 N H N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N N N 181 S C N 182 N C N 183 N O N 184 N C N 185 N C N 186 N C N 187 N C N 188 N O N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N N N 203 S C N 204 N C N 205 N O N 206 N C N 207 N C N 208 N C N 209 N C N 210 N N N 211 N O N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 S C N 228 S C N 229 S C N 230 S C N 231 R C N 232 N C N 233 N O N 234 N O N 235 N O N 236 N O N 237 N O N 238 N O N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N N N 252 S C N 253 N C N 254 N O N 255 N C N 256 N C N 257 N S N 258 N C N 259 N O N 260 N H N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 R C N 272 R C N 273 R C N 274 S C N 275 R C N 276 N C N 277 N C N 278 N C N 279 N N N 280 N O N 281 N O N 282 N O N 283 N O N 284 N O N 285 N O N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N H N 292 N H N 293 N H N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N N N 302 S C N 303 N C N 304 N O N 305 N C Y 306 N C Y 307 N C Y 308 N C Y 309 N C Y 310 N C Y 311 N C N 312 N O N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N N N 325 S C N 326 N C N 327 N O N 328 N C N 329 N C N 330 N C N 331 N O N 332 N H N 333 N H N 334 N H N 335 N H N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N N N 342 S C N 343 N C N 344 N O N 345 N C N 346 N O N 347 N O N 348 N H N 349 N H N 350 N H N 351 N H N 352 N H N 353 N H N 354 N H N 355 N N N 356 S C N 357 N C N 358 N O N 359 R C N 360 N O N 361 N C N 362 N O N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N N N 373 S C N 374 N C N 375 N O N 376 N C Y 377 N C Y 378 N C Y 379 N C Y 380 N N Y 381 N C Y 382 N C Y 383 N C Y 384 N C Y 385 N C N 386 N O N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 392 N H N 393 N H N 394 N H N 395 N H N 396 N H N 397 N H N 398 N H N 399 N N N 400 S C N 401 N C N 402 N O N 403 N C Y 404 N C Y 405 N C Y 406 N C Y 407 N C Y 408 N C Y 409 N C N 410 N O N 411 N O N 412 N H N 413 N H N 414 N H N 415 N H N 416 N H N 417 N H N 418 N H N 419 N H N 420 N H N 421 N H N 422 N H N 423 N N N 424 S C N 425 N C N 426 N O N 427 N C N 428 N C N 429 N C N 430 N O N 431 N H N 432 N H N 433 N H N 434 N H N 435 N H N 436 N H N 437 N H N 438 N H N 439 N H N 440 N H N 441 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N doub N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N doub N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N doub N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N doub N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N doub N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N doub N 296 N sing N 297 N sing N 298 N sing N 299 N sing Y 300 N doub Y 301 N sing Y 302 N sing N 303 N sing Y 304 N doub N 305 N sing Y 306 N doub N 307 N sing Y 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N doub N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N doub N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N doub N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N doub N 365 N sing N 366 N sing N 367 N sing N 368 N sing Y 369 N doub Y 370 N sing Y 371 N sing N 372 N sing Y 373 N doub Y 374 N sing Y 375 N sing N 376 N sing Y 377 N sing Y 378 N doub N 379 N sing Y 380 N doub N 381 N sing Y 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N doub N 393 N sing N 394 N sing N 395 N sing N 396 N sing Y 397 N doub Y 398 N sing Y 399 N sing N 400 N sing Y 401 N doub N 402 N sing Y 403 N doub N 404 N sing Y 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N sing N 410 N sing N 411 N sing N 412 N sing N 413 N sing N 414 N sing N 415 N sing N 416 N doub N 417 N sing N 418 N sing N 419 N sing N 420 N sing N 421 N sing N 422 N sing N 423 N sing N 424 N sing N 425 N sing N 426 N sing N 427 N sing US Plos One 1932-6203 9 e85349 e85349 10.1371/journal.pone.0085349 24465541 Identification of a New Epitope in uPAR as a Target for the Cancer Therapeutic Monoclonal Antibody ATN-658, a Structural Homolog of the uPAR Binding Integrin CD11b ( alpha M) 2014 10.2210/pdb4k24/pdb pdb_00004k24 100 1 CCD 2007-01-03 MARMOSAIC 300 mm CCD SINGLE WAVELENGTH M x-ray 1 1.04 1.0 X29A NSLS 1.04 SYNCHROTRON NSLS BEAMLINE X29A 15359.318 Urokinase-type plasminogen activator 3.4.21.73 UNP residues 21-153 1 man polymer 4573.103 Vitronectin UNP residues 21-60 1 man polymer 24482.459 anti-uPAR antibody, heavy chain 1 nat polymer 24156.930 anti-uPAR antibody, light chain 1 nat polymer 31601.479 Urokinase plasminogen activator surface receptor UNP residues 23-303 1 man polymer 424.401 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose 2 man branched 180.156 alpha-D-mannopyranose 1 man non-polymer 221.208 2-acetamido-2-deoxy-beta-D-glucopyranose 1 man non-polymer U-plasminogen activator, uPA, Urokinase-type plasminogen activator long chain A, Urokinase-type plasminogen activator short chain A, Urokinase-type plasminogen activator chain B VN, S-protein, Serum-spreading factor, V75, Vitronectin V65 subunit, Vitronectin V10 subunit, Somatomedin-B U-PAR, uPAR, Monocyte activation antigen Mo3 no no RSSNELHQVPSNCDCLNGGTCVSNKYFSNIHWCNCPKKFGGQHCEIDKSKTCYEGNGHFYRGKASTDTMGRPCLPWNSAT VLQQTYHAHRSDALQLGLGKHNYCRNPDNRRRPWCYVQVGLKPLVQECMVHDCAD RSSNELHQVPSNCDCLNGGTCVSNKYFSNIHWCNCPKKFGGQHCEIDKSKTCYEGNGHFYRGKASTDTMGRPCLPWNSAT VLQQTYHAHRSDALQLGLGKHNYCRNPDNRRRPWCYVQVGLKPLVQECMVHDCAD A polypeptide(L) no no QESCKGRCTEGFNVDKKCQCDELCSYYQSCCTDYTAECKP QESCKGRCTEGFNVDKKCQCDELCSYYQSCCTDYTAECKP B polypeptide(L) no no EVQLQQSGPELVKTGASVKISCKASGYSFTSYYMHWVKQSHGKSLEWIGEINPYNGGASYNQKIKGRATFTVDTSSRTAY MQFNSLTSEDSAVYYCARSIYGHSVLDYWGQGTSVSVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTW NSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSQTVTCNVAHPASSTKVDKKIVPRDCGCKPCIC EVQLQQSGPELVKTGASVKISCKASGYSFTSYYMHWVKQSHGKSLEWIGEINPYNGGASYNQKIKGRATFTVDTSSRTAY MQFNSLTSEDSAVYYCARSIYGHSVLDYWGQGTSVSVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTW NSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSQTVTCNVAHPASSTKVDKKIVPRDCGCKPCIC H polypeptide(L) no no DVVMTQTPLTLSVTIGQPASISCKSSQSLLDSDGKTYLNWLLQRPGQSPKRLIYLVSKLDSGVPDRFTGSGSGTDFTLKI SRVEAEDLGVYYCWQGTHFPLTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSER QNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC DVVMTQTPLTLSVTIGQPASISCKSSQSLLDSDGKTYLNWLLQRPGQSPKRLIYLVSKLDSGVPDRFTGSGSGTDFTLKI SRVEAEDLGVYYCWQGTHFPLTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSER QNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC L polypeptide(L) no no RSLRCMQCKTNGDCRVEECALGQDLCRTTIVRLWEEGEELELVEKSCTHSEKTNRTLSYRTGLKITSLTEVVCGLDLCNQ GNSGRAVTYSRSRYLECISCGSSDMSCERGRHQSLQCRSPEEQCLDVVTHWIQEGEEGRPKDDRHLRGCGYLPGCPGSNG FHNNDTFHFLKCCNTTKCNEGPILELENLPQNGRQCYSCKGNSTHGCSSEETFLIDCRGPMNQCLVATGTHEPKNQSYMV RGCATASMCQHAHLGDAFSMNHIDVSCCTKSGCNHPDLDVQYR RSLRCMQCKTNGDCRVEECALGQDLCRTTIVRLWEEGEELELVEKSCTHSEKTNRTLSYRTGLKITSLTEVVCGLDLCNQ GNSGRAVTYSRSRYLECISCGSSDMSCERGRHQSLQCRSPEEQCLDVVTHWIQEGEEGRPKDDRHLRGCGYLPGCPGSNG FHNNDTFHFLKCCNTTKCNEGPILELENLPQNGRQCYSCKGNSTHGCSSEETFLIDCRGPMNQCLVATGTHEPKNQSYMV RGCATASMCQHAHLGDAFSMNHIDVSCCTKSGCNHPDLDVQYR U polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human sample PLAU 9606 Homo sapiens 7227 Drosophila melanogaster Schneider 2 plasmid pMT/Bip human sample VTN 9606 Homo sapiens 562 Escherichia coli BL21(DE3) plasmid human sample MO3, PLAUR, UPAR 9606 Homo sapiens 7227 Drosophila melanogaster Schneider 2 plasmid pMT/Bip sample 10090 Mus musculus sample 10090 Mus musculus 1 5.10 75.88 VAPOR DIFFUSION, SITTING DROP 7.5 0.1M HEPES pH 7.5, 55%(v/v) Tacsimate, 2%(v/v) 2-methyl-1,3-propanediol, vapor diffusion, sitting drop, temperature 295K 295 pdbx_nonpoly_scheme pdbx_struct_assembly pdbx_struct_assembly_gen pdbx_struct_assembly_prop pdbx_unobs_or_zero_occ_atoms pdbx_validate_close_contact struct_biol struct_conn struct_ref_seq_dif atom_site atom_site_anisotrop chem_comp entity pdbx_branch_scheme pdbx_chem_comp_identifier pdbx_entity_branch pdbx_entity_branch_descriptor pdbx_entity_branch_link pdbx_entity_branch_list pdbx_entity_nonpoly pdbx_nonpoly_scheme pdbx_struct_assembly_gen pdbx_unobs_or_zero_occ_atoms pdbx_validate_close_contact struct_asym struct_conn struct_site struct_site_gen chem_comp chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model repository Initial release Carbohydrate remediation repository Remediation Data collection Advisory Data collection Database references Derived calculations Advisory Atomic model Data collection Derived calculations Structure summary Data collection Database references Refinement description Structure summary 1 0 2014-02-26 1 1 2014-03-05 1 2 2019-12-11 2 0 2020-07-29 2 1 2023-11-08 _pdbx_nonpoly_scheme.ndb_seq_num _struct_ref_seq_dif.details _atom_site.B_iso_or_equiv _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.label_asym_id _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_entity_id _atom_site.type_symbol _atom_site_anisotrop.U[1][1] _atom_site_anisotrop.U[1][2] _atom_site_anisotrop.U[1][3] _atom_site_anisotrop.U[2][2] _atom_site_anisotrop.U[2][3] _atom_site_anisotrop.U[3][3] _atom_site_anisotrop.pdbx_auth_asym_id _atom_site_anisotrop.pdbx_auth_atom_id _atom_site_anisotrop.pdbx_auth_comp_id _atom_site_anisotrop.pdbx_auth_seq_id _atom_site_anisotrop.pdbx_label_asym_id _atom_site_anisotrop.pdbx_label_atom_id _atom_site_anisotrop.pdbx_label_comp_id _atom_site_anisotrop.type_symbol _chem_comp.name _chem_comp.type _pdbx_entity_nonpoly.comp_id _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_struct_assembly_gen.asym_id_list _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.auth_seq_id_2 _struct_conn.pdbx_role _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _chem_comp.pdbx_synonyms _database_2.pdbx_DOI _database_2.pdbx_database_accession Y NAG 301 n C NAG 1 Y NAG 302 n C NAG 2 Y NAG 305 n D NAG 1 Y NAG 306 n D NAG 2 DManpa a-D-mannopyranose a-D-Manp Man DGlcpNAcb N-acetyl-b-D-glucopyranosamine b-D-GlcpNAc GlcNAc RCSB Y PDBJ 2013-04-08 REL REL oligosaccharide DGlcpNAcb1-4DGlcpNAcb1-ROH 6 GMML 1.0 Glycam Condensed Sequence WURCS=2.0/1,2,1/[a2122h-1b_1-5_2*NCC/3=O]/1-1/a4-b1 6 PDB2Glycan 1.1.0 WURCS [][D-1-deoxy-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{}} 6 PDB-CARE LINUCS C1 O4 NAG NAG 2 1 6 O1 HO4 sing n n MAN alpha-D-mannopyranose NAG 2-acetamido-2-deoxy-beta-D-glucopyranose A SEQUENCE DATABASE REFERENCE FOR ENTITY 3 AND 4 DOES NOT CURRENTLY EXIST. 3BT2 3BT2(chain A, B, U), 4K23(chain H, L) PDB experimental model 4K23 3BT2(chain A, B, U), 4K23(chain H, L) PDB experimental model MAN 303 7 MAN MAN 303 U NAG 304 8 NAG NAG 304 U n 1 -1 A n 2 0 A n 3 1 A n 4 2 A n 5 3 A n 6 4 A n 7 5 A n 8 6 A n 9 7 A PRO 8 n 10 PRO 8 A SER 9 n 11 SER 9 A ASN 10 n 12 ASN 10 A CYS 11 n 13 CYS 11 A ASP 12 n 14 ASP 12 A CYS 13 n 15 CYS 13 A LEU 14 n 16 LEU 14 A ASN 15 n 17 ASN 15 A GLY 16 n 18 GLY 16 A GLY 17 n 19 GLY 17 A THR 18 n 20 THR 18 A CYS 19 n 21 CYS 19 A VAL 20 n 22 VAL 20 A SER 21 n 23 SER 21 A ASN 22 n 24 ASN 22 A LYS 23 n 25 LYS 23 A TYR 24 n 26 TYR 24 A PHE 25 n 27 PHE 25 A SER 26 n 28 SER 26 A ASN 27 n 29 ASN 27 A ILE 28 n 30 ILE 28 A HIS 29 n 31 HIS 29 A TRP 30 n 32 TRP 30 A CYS 31 n 33 CYS 31 A ASN 32 n 34 ASN 32 A CYS 33 n 35 CYS 33 A PRO 34 n 36 PRO 34 A LYS 35 n 37 LYS 35 A LYS 36 n 38 LYS 36 A PHE 37 n 39 PHE 37 A GLY 38 n 40 GLY 38 A GLY 39 n 41 GLY 39 A GLN 40 n 42 GLN 40 A HIS 41 n 43 HIS 41 A CYS 42 n 44 CYS 42 A GLU 43 n 45 GLU 43 A ILE 44 n 46 ILE 44 A ASP 45 n 47 ASP 45 A LYS 46 n 48 LYS 46 A SER 47 n 49 SER 47 A LYS 48 n 50 LYS 48 A THR 49 n 51 THR 49 A CYS 50 n 52 CYS 50 A TYR 51 n 53 TYR 51 A GLU 52 n 54 GLU 52 A GLY 53 n 55 GLY 53 A ASN 54 n 56 ASN 54 A GLY 55 n 57 GLY 55 A HIS 56 n 58 HIS 56 A PHE 57 n 59 PHE 57 A TYR 58 n 60 TYR 58 A ARG 59 n 61 ARG 59 A GLY 60 n 62 GLY 60 A LYS 61 n 63 LYS 61 A ALA 62 n 64 ALA 62 A SER 63 n 65 SER 63 A THR 64 n 66 THR 64 A ASP 65 n 67 ASP 65 A THR 66 n 68 THR 66 A MET 67 n 69 MET 67 A GLY 68 n 70 GLY 68 A ARG 69 n 71 ARG 69 A PRO 70 n 72 PRO 70 A CYS 71 n 73 CYS 71 A LEU 72 n 74 LEU 72 A PRO 73 n 75 PRO 73 A TRP 74 n 76 TRP 74 A ASN 75 n 77 ASN 75 A SER 76 n 78 SER 76 A ALA 77 n 79 ALA 77 A THR 78 n 80 THR 78 A VAL 79 n 81 VAL 79 A LEU 80 n 82 LEU 80 A GLN 81 n 83 GLN 81 A GLN 82 n 84 GLN 82 A THR 83 n 85 THR 83 A TYR 84 n 86 TYR 84 A HIS 85 n 87 HIS 85 A ALA 86 n 88 ALA 86 A HIS 87 n 89 HIS 87 A ARG 88 n 90 ARG 88 A SER 89 n 91 SER 89 A ASP 90 n 92 ASP 90 A ALA 91 n 93 ALA 91 A LEU 92 n 94 LEU 92 A GLN 93 n 95 GLN 93 A LEU 94 n 96 LEU 94 A GLY 95 n 97 GLY 95 A LEU 96 n 98 LEU 96 A GLY 97 n 99 GLY 97 A LYS 98 n 100 LYS 98 A HIS 99 n 101 HIS 99 A ASN 100 n 102 ASN 100 A TYR 101 n 103 TYR 101 A CYS 102 n 104 CYS 102 A ARG 103 n 105 ARG 103 A ASN 104 n 106 ASN 104 A PRO 105 n 107 PRO 105 A ASP 106 n 108 ASP 106 A ASN 107 n 109 ASN 107 A ARG 108 n 110 ARG 108 A ARG 109 n 111 ARG 109 A ARG 110 n 112 ARG 110 A PRO 111 n 113 PRO 111 A TRP 112 n 114 TRP 112 A CYS 113 n 115 CYS 113 A TYR 114 n 116 TYR 114 A VAL 115 n 117 VAL 115 A GLN 116 n 118 GLN 116 A VAL 117 n 119 VAL 117 A GLY 118 n 120 GLY 118 A LEU 119 n 121 LEU 119 A LYS 120 n 122 LYS 120 A PRO 121 n 123 PRO 121 A LEU 122 n 124 LEU 122 A VAL 123 n 125 VAL 123 A GLN 124 n 126 GLN 124 A GLU 125 n 127 GLU 125 A CYS 126 n 128 CYS 126 A MET 127 n 129 MET 127 A VAL 128 n 130 VAL 128 A HIS 129 n 131 HIS 129 A ASP 130 n 132 ASP 130 A CYS 131 n 133 CYS 131 A ALA 132 n 134 ALA 132 A n 135 133 A GLN 2 n 1 GLN 2 B GLU 3 n 2 GLU 3 B SER 4 n 3 SER 4 B CYS 5 n 4 CYS 5 B LYS 6 n 5 LYS 6 B GLY 7 n 6 GLY 7 B ARG 8 n 7 ARG 8 B CYS 9 n 8 CYS 9 B THR 10 n 9 THR 10 B GLU 11 n 10 GLU 11 B GLY 12 n 11 GLY 12 B PHE 13 n 12 PHE 13 B ASN 14 n 13 ASN 14 B VAL 15 n 14 VAL 15 B ASP 16 n 15 ASP 16 B LYS 17 n 16 LYS 17 B LYS 18 n 17 LYS 18 B CYS 19 n 18 CYS 19 B GLN 20 n 19 GLN 20 B CYS 21 n 20 CYS 21 B ASP 22 n 21 ASP 22 B GLU 23 n 22 GLU 23 B LEU 24 n 23 LEU 24 B CYS 25 n 24 CYS 25 B SER 26 n 25 SER 26 B TYR 27 n 26 TYR 27 B TYR 28 n 27 TYR 28 B GLN 29 n 28 GLN 29 B SER 30 n 29 SER 30 B CYS 31 n 30 CYS 31 B CYS 32 n 31 CYS 32 B THR 33 n 32 THR 33 B ASP 34 n 33 ASP 34 B TYR 35 n 34 TYR 35 B THR 36 n 35 THR 36 B ALA 37 n 36 ALA 37 B GLU 38 n 37 GLU 38 B CYS 39 n 38 CYS 39 B LYS 40 n 39 LYS 40 B PRO 41 n 40 PRO 41 B GLU 1 n 1 GLU 1 H VAL 2 n 2 VAL 2 H GLN 3 n 3 GLN 3 H LEU 4 n 4 LEU 4 H GLN 5 n 5 GLN 5 H GLN 6 n 6 GLN 6 H SER 7 n 7 SER 7 H GLY 8 n 8 GLY 8 H PRO 9 n 9 PRO 9 H GLU 10 n 10 GLU 10 H LEU 11 n 11 LEU 11 H VAL 12 n 12 VAL 12 H LYS 13 n 13 LYS 13 H THR 14 n 14 THR 14 H GLY 15 n 15 GLY 15 H ALA 16 n 16 ALA 16 H SER 17 n 17 SER 17 H VAL 18 n 18 VAL 18 H LYS 19 n 19 LYS 19 H ILE 20 n 20 ILE 20 H SER 21 n 21 SER 21 H CYS 22 n 22 CYS 22 H LYS 23 n 23 LYS 23 H ALA 24 n 24 ALA 24 H SER 25 n 25 SER 25 H GLY 26 n 26 GLY 26 H TYR 27 n 27 TYR 27 H SER 28 n 28 SER 28 H PHE 29 n 29 PHE 29 H THR 30 n 30 THR 30 H SER 31 n 31 SER 31 H TYR 32 n 32 TYR 32 H TYR 33 n 33 TYR 33 H MET 34 n 34 MET 34 H HIS 35 n 35 HIS 35 H TRP 36 n 36 TRP 36 H VAL 37 n 37 VAL 37 H LYS 38 n 38 LYS 38 H GLN 39 n 39 GLN 39 H SER 40 n 40 SER 40 H HIS 41 n 41 HIS 41 H GLY 42 n 42 GLY 42 H LYS 43 n 43 LYS 43 H SER 44 n 44 SER 44 H LEU 45 n 45 LEU 45 H GLU 46 n 46 GLU 46 H TRP 47 n 47 TRP 47 H ILE 48 n 48 ILE 48 H GLY 49 n 49 GLY 49 H GLU 50 n 50 GLU 50 H ILE 51 n 51 ILE 51 H ASN 52 n 52 ASN 52 H PRO 52 n 53 A PRO 52 H TYR 53 n 54 TYR 53 H ASN 54 n 55 ASN 54 H GLY 55 n 56 GLY 55 H GLY 56 n 57 GLY 56 H ALA 57 n 58 ALA 57 H SER 58 n 59 SER 58 H TYR 59 n 60 TYR 59 H ASN 60 n 61 ASN 60 H GLN 61 n 62 GLN 61 H LYS 62 n 63 LYS 62 H ILE 63 n 64 ILE 63 H LYS 64 n 65 LYS 64 H GLY 65 n 66 GLY 65 H ARG 66 n 67 ARG 66 H ALA 67 n 68 ALA 67 H THR 68 n 69 THR 68 H PHE 69 n 70 PHE 69 H THR 70 n 71 THR 70 H VAL 71 n 72 VAL 71 H ASP 72 n 73 ASP 72 H THR 73 n 74 THR 73 H SER 74 n 75 SER 74 H SER 75 n 76 SER 75 H ARG 76 n 77 ARG 76 H THR 77 n 78 THR 77 H ALA 78 n 79 ALA 78 H TYR 79 n 80 TYR 79 H MET 80 n 81 MET 80 H GLN 81 n 82 GLN 81 H PHE 82 n 83 PHE 82 H ASN 82 n 84 A ASN 82 H SER 82 n 85 B SER 82 H LEU 82 n 86 C LEU 82 H THR 83 n 87 THR 83 H SER 84 n 88 SER 84 H GLU 85 n 89 GLU 85 H ASP 86 n 90 ASP 86 H SER 87 n 91 SER 87 H ALA 88 n 92 ALA 88 H VAL 89 n 93 VAL 89 H TYR 90 n 94 TYR 90 H TYR 91 n 95 TYR 91 H CYS 92 n 96 CYS 92 H ALA 93 n 97 ALA 93 H ARG 94 n 98 ARG 94 H SER 95 n 99 SER 95 H ILE 96 n 100 ILE 96 H TYR 97 n 101 TYR 97 H GLY 98 n 102 GLY 98 H HIS 99 n 103 HIS 99 H SER 100 n 104 SER 100 H VAL 100 n 105 A VAL 100 H LEU 100 n 106 B LEU 100 H ASP 101 n 107 ASP 101 H TYR 102 n 108 TYR 102 H TRP 103 n 109 TRP 103 H GLY 104 n 110 GLY 104 H GLN 105 n 111 GLN 105 H GLY 106 n 112 GLY 106 H THR 107 n 113 THR 107 H SER 108 n 114 SER 108 H VAL 109 n 115 VAL 109 H SER 110 n 116 SER 110 H VAL 111 n 117 VAL 111 H SER 112 n 118 SER 112 H SER 113 n 119 SER 113 H ALA 114 n 120 ALA 114 H LYS 115 n 121 LYS 115 H THR 116 n 122 THR 116 H THR 117 n 123 THR 117 H PRO 118 n 124 PRO 118 H PRO 119 n 125 PRO 119 H SER 120 n 126 SER 120 H VAL 121 n 127 VAL 121 H TYR 122 n 128 TYR 122 H PRO 123 n 129 PRO 123 H LEU 124 n 130 LEU 124 H ALA 125 n 131 ALA 125 H PRO 126 n 132 PRO 126 H GLY 127 n 133 GLY 127 H n 134 128 H n 135 129 H n 136 130 H n 137 131 H n 138 132 H n 139 133 H SER 134 n 140 SER 134 H MET 135 n 141 MET 135 H VAL 136 n 142 VAL 136 H THR 137 n 143 THR 137 H LEU 138 n 144 LEU 138 H GLY 139 n 145 GLY 139 H CYS 140 n 146 CYS 140 H LEU 141 n 147 LEU 141 H VAL 142 n 148 VAL 142 H LYS 143 n 149 LYS 143 H GLY 144 n 150 GLY 144 H TYR 145 n 151 TYR 145 H PHE 146 n 152 PHE 146 H PRO 147 n 153 PRO 147 H GLU 148 n 154 GLU 148 H PRO 149 n 155 PRO 149 H VAL 150 n 156 VAL 150 H THR 151 n 157 THR 151 H VAL 152 n 158 VAL 152 H THR 153 n 159 THR 153 H TRP 154 n 160 TRP 154 H ASN 155 n 161 ASN 155 H SER 156 n 162 SER 156 H GLY 157 n 163 GLY 157 H SER 158 n 164 SER 158 H LEU 159 n 165 LEU 159 H SER 160 n 166 SER 160 H SER 161 n 167 SER 161 H GLY 162 n 168 GLY 162 H VAL 163 n 169 VAL 163 H HIS 164 n 170 HIS 164 H THR 165 n 171 THR 165 H PHE 166 n 172 PHE 166 H PRO 167 n 173 PRO 167 H ALA 168 n 174 ALA 168 H VAL 169 n 175 VAL 169 H LEU 170 n 176 LEU 170 H GLN 171 n 177 GLN 171 H SER 172 n 178 SER 172 H ASP 173 n 179 ASP 173 H LEU 174 n 180 LEU 174 H TYR 175 n 181 TYR 175 H THR 176 n 182 THR 176 H LEU 177 n 183 LEU 177 H SER 178 n 184 SER 178 H SER 179 n 185 SER 179 H SER 180 n 186 SER 180 H VAL 181 n 187 VAL 181 H THR 182 n 188 THR 182 H VAL 183 n 189 VAL 183 H PRO 184 n 190 PRO 184 H SER 185 n 191 SER 185 H SER 186 n 192 SER 186 H THR 187 n 193 THR 187 H TRP 188 n 194 TRP 188 H PRO 189 n 195 PRO 189 H SER 190 n 196 SER 190 H GLN 191 n 197 GLN 191 H THR 192 n 198 THR 192 H VAL 193 n 199 VAL 193 H THR 194 n 200 THR 194 H CYS 195 n 201 CYS 195 H ASN 196 n 202 ASN 196 H VAL 197 n 203 VAL 197 H ALA 198 n 204 ALA 198 H HIS 199 n 205 HIS 199 H PRO 200 n 206 PRO 200 H ALA 201 n 207 ALA 201 H SER 202 n 208 SER 202 H SER 203 n 209 SER 203 H THR 204 n 210 THR 204 H LYS 205 n 211 LYS 205 H VAL 206 n 212 VAL 206 H ASP 207 n 213 ASP 207 H LYS 208 n 214 LYS 208 H LYS 209 n 215 LYS 209 H ILE 210 n 216 ILE 210 H VAL 211 n 217 VAL 211 H PRO 212 n 218 PRO 212 H n 219 213 H n 220 214 H n 221 215 H n 222 216 H n 223 217 H n 224 218 H n 225 219 H n 226 220 H n 227 221 H n 228 222 H ASP 1 n 1 ASP 1 L VAL 2 n 2 VAL 2 L VAL 3 n 3 VAL 3 L MET 4 n 4 MET 4 L THR 5 n 5 THR 5 L GLN 6 n 6 GLN 6 L THR 7 n 7 THR 7 L PRO 8 n 8 PRO 8 L LEU 9 n 9 LEU 9 L THR 10 n 10 THR 10 L LEU 11 n 11 LEU 11 L SER 12 n 12 SER 12 L VAL 13 n 13 VAL 13 L THR 14 n 14 THR 14 L ILE 15 n 15 ILE 15 L GLY 16 n 16 GLY 16 L GLN 17 n 17 GLN 17 L PRO 18 n 18 PRO 18 L ALA 19 n 19 ALA 19 L SER 20 n 20 SER 20 L ILE 21 n 21 ILE 21 L SER 22 n 22 SER 22 L CYS 23 n 23 CYS 23 L LYS 24 n 24 LYS 24 L SER 25 n 25 SER 25 L SER 26 n 26 SER 26 L GLN 27 n 27 GLN 27 L SER 27 n 28 A SER 27 L LEU 27 n 29 B LEU 27 L LEU 27 n 30 C LEU 27 L ASP 27 n 31 D ASP 27 L SER 27 n 32 E SER 27 L ASP 28 n 33 ASP 28 L GLY 29 n 34 GLY 29 L LYS 30 n 35 LYS 30 L THR 31 n 36 THR 31 L TYR 32 n 37 TYR 32 L LEU 33 n 38 LEU 33 L ASN 34 n 39 ASN 34 L TRP 35 n 40 TRP 35 L LEU 36 n 41 LEU 36 L LEU 37 n 42 LEU 37 L GLN 38 n 43 GLN 38 L ARG 39 n 44 ARG 39 L PRO 40 n 45 PRO 40 L GLY 41 n 46 GLY 41 L GLN 42 n 47 GLN 42 L SER 43 n 48 SER 43 L PRO 44 n 49 PRO 44 L LYS 45 n 50 LYS 45 L ARG 46 n 51 ARG 46 L LEU 47 n 52 LEU 47 L ILE 48 n 53 ILE 48 L TYR 49 n 54 TYR 49 L LEU 50 n 55 LEU 50 L VAL 51 n 56 VAL 51 L SER 52 n 57 SER 52 L LYS 53 n 58 LYS 53 L LEU 54 n 59 LEU 54 L ASP 55 n 60 ASP 55 L SER 56 n 61 SER 56 L GLY 57 n 62 GLY 57 L VAL 58 n 63 VAL 58 L PRO 59 n 64 PRO 59 L ASP 60 n 65 ASP 60 L ARG 61 n 66 ARG 61 L PHE 62 n 67 PHE 62 L THR 63 n 68 THR 63 L GLY 64 n 69 GLY 64 L SER 65 n 70 SER 65 L GLY 66 n 71 GLY 66 L SER 67 n 72 SER 67 L GLY 68 n 73 GLY 68 L THR 69 n 74 THR 69 L ASP 70 n 75 ASP 70 L PHE 71 n 76 PHE 71 L THR 72 n 77 THR 72 L LEU 73 n 78 LEU 73 L LYS 74 n 79 LYS 74 L ILE 75 n 80 ILE 75 L SER 76 n 81 SER 76 L ARG 77 n 82 ARG 77 L VAL 78 n 83 VAL 78 L GLU 79 n 84 GLU 79 L ALA 80 n 85 ALA 80 L GLU 81 n 86 GLU 81 L ASP 82 n 87 ASP 82 L LEU 83 n 88 LEU 83 L GLY 84 n 89 GLY 84 L VAL 85 n 90 VAL 85 L TYR 86 n 91 TYR 86 L TYR 87 n 92 TYR 87 L CYS 88 n 93 CYS 88 L TRP 89 n 94 TRP 89 L GLN 90 n 95 GLN 90 L GLY 91 n 96 GLY 91 L THR 92 n 97 THR 92 L HIS 93 n 98 HIS 93 L PHE 94 n 99 PHE 94 L PRO 95 n 100 PRO 95 L LEU 96 n 101 LEU 96 L THR 97 n 102 THR 97 L PHE 98 n 103 PHE 98 L GLY 99 n 104 GLY 99 L ALA 100 n 105 ALA 100 L GLY 101 n 106 GLY 101 L THR 102 n 107 THR 102 L LYS 103 n 108 LYS 103 L LEU 104 n 109 LEU 104 L GLU 105 n 110 GLU 105 L LEU 106 n 111 LEU 106 L LYS 107 n 112 LYS 107 L ARG 108 n 113 ARG 108 L ALA 109 n 114 ALA 109 L ASP 110 n 115 ASP 110 L ALA 111 n 116 ALA 111 L ALA 112 n 117 ALA 112 L PRO 113 n 118 PRO 113 L THR 114 n 119 THR 114 L VAL 115 n 120 VAL 115 L SER 116 n 121 SER 116 L ILE 117 n 122 ILE 117 L PHE 118 n 123 PHE 118 L PRO 119 n 124 PRO 119 L PRO 120 n 125 PRO 120 L SER 121 n 126 SER 121 L SER 122 n 127 SER 122 L GLU 123 n 128 GLU 123 L GLN 124 n 129 GLN 124 L LEU 125 n 130 LEU 125 L THR 126 n 131 THR 126 L SER 127 n 132 SER 127 L GLY 128 n 133 GLY 128 L GLY 129 n 134 GLY 129 L ALA 130 n 135 ALA 130 L SER 131 n 136 SER 131 L VAL 132 n 137 VAL 132 L VAL 133 n 138 VAL 133 L CYS 134 n 139 CYS 134 L PHE 135 n 140 PHE 135 L LEU 136 n 141 LEU 136 L ASN 137 n 142 ASN 137 L ASN 138 n 143 ASN 138 L PHE 139 n 144 PHE 139 L TYR 140 n 145 TYR 140 L PRO 141 n 146 PRO 141 L LYS 142 n 147 LYS 142 L ASP 143 n 148 ASP 143 L ILE 144 n 149 ILE 144 L ASN 145 n 150 ASN 145 L VAL 146 n 151 VAL 146 L LYS 147 n 152 LYS 147 L TRP 148 n 153 TRP 148 L LYS 149 n 154 LYS 149 L ILE 150 n 155 ILE 150 L ASP 151 n 156 ASP 151 L GLY 152 n 157 GLY 152 L SER 153 n 158 SER 153 L GLU 154 n 159 GLU 154 L ARG 155 n 160 ARG 155 L GLN 156 n 161 GLN 156 L ASN 157 n 162 ASN 157 L GLY 158 n 163 GLY 158 L VAL 159 n 164 VAL 159 L LEU 160 n 165 LEU 160 L ASN 161 n 166 ASN 161 L SER 162 n 167 SER 162 L TRP 163 n 168 TRP 163 L THR 164 n 169 THR 164 L ASP 165 n 170 ASP 165 L GLN 166 n 171 GLN 166 L ASP 167 n 172 ASP 167 L SER 168 n 173 SER 168 L LYS 169 n 174 LYS 169 L ASP 170 n 175 ASP 170 L SER 171 n 176 SER 171 L THR 172 n 177 THR 172 L TYR 173 n 178 TYR 173 L SER 174 n 179 SER 174 L MET 175 n 180 MET 175 L SER 176 n 181 SER 176 L SER 177 n 182 SER 177 L THR 178 n 183 THR 178 L LEU 179 n 184 LEU 179 L THR 180 n 185 THR 180 L LEU 181 n 186 LEU 181 L THR 182 n 187 THR 182 L LYS 183 n 188 LYS 183 L ASP 184 n 189 ASP 184 L GLU 185 n 190 GLU 185 L TYR 186 n 191 TYR 186 L GLU 187 n 192 GLU 187 L ARG 188 n 193 ARG 188 L HIS 189 n 194 HIS 189 L ASN 190 n 195 ASN 190 L SER 191 n 196 SER 191 L TYR 192 n 197 TYR 192 L THR 193 n 198 THR 193 L CYS 194 n 199 CYS 194 L GLU 195 n 200 GLU 195 L ALA 196 n 201 ALA 196 L THR 197 n 202 THR 197 L HIS 198 n 203 HIS 198 L LYS 199 n 204 LYS 199 L THR 200 n 205 THR 200 L SER 201 n 206 SER 201 L THR 202 n 207 THR 202 L SER 203 n 208 SER 203 L PRO 204 n 209 PRO 204 L ILE 205 n 210 ILE 205 L VAL 206 n 211 VAL 206 L LYS 207 n 212 LYS 207 L SER 208 n 213 SER 208 L PHE 209 n 214 PHE 209 L ASN 210 n 215 ASN 210 L ARG 211 n 216 ARG 211 L ASN 212 n 217 ASN 212 L GLU 213 n 218 GLU 213 L n 219 214 L n 1 -1 U n 2 0 U LEU 1 n 3 LEU 1 U ARG 2 n 4 ARG 2 U CYS 3 n 5 CYS 3 U MET 4 n 6 MET 4 U GLN 5 n 7 GLN 5 U CYS 6 n 8 CYS 6 U LYS 7 n 9 LYS 7 U THR 8 n 10 THR 8 U ASN 9 n 11 ASN 9 U GLY 10 n 12 GLY 10 U ASP 11 n 13 ASP 11 U CYS 12 n 14 CYS 12 U ARG 13 n 15 ARG 13 U VAL 14 n 16 VAL 14 U GLU 15 n 17 GLU 15 U GLU 16 n 18 GLU 16 U CYS 17 n 19 CYS 17 U ALA 18 n 20 ALA 18 U LEU 19 n 21 LEU 19 U GLY 20 n 22 GLY 20 U GLN 21 n 23 GLN 21 U ASP 22 n 24 ASP 22 U LEU 23 n 25 LEU 23 U CYS 24 n 26 CYS 24 U ARG 25 n 27 ARG 25 U THR 26 n 28 THR 26 U THR 27 n 29 THR 27 U ILE 28 n 30 ILE 28 U VAL 29 n 31 VAL 29 U ARG 30 n 32 ARG 30 U LEU 31 n 33 LEU 31 U TRP 32 n 34 TRP 32 U GLU 33 n 35 GLU 33 U GLU 34 n 36 GLU 34 U GLY 35 n 37 GLY 35 U GLU 36 n 38 GLU 36 U GLU 37 n 39 GLU 37 U LEU 38 n 40 LEU 38 U GLU 39 n 41 GLU 39 U LEU 40 n 42 LEU 40 U VAL 41 n 43 VAL 41 U GLU 42 n 44 GLU 42 U LYS 43 n 45 LYS 43 U SER 44 n 46 SER 44 U CYS 45 n 47 CYS 45 U THR 46 n 48 THR 46 U HIS 47 n 49 HIS 47 U SER 48 n 50 SER 48 U GLU 49 n 51 GLU 49 U LYS 50 n 52 LYS 50 U THR 51 n 53 THR 51 U ASN 52 n 54 ASN 52 U ARG 53 n 55 ARG 53 U THR 54 n 56 THR 54 U LEU 55 n 57 LEU 55 U SER 56 n 58 SER 56 U TYR 57 n 59 TYR 57 U ARG 58 n 60 ARG 58 U THR 59 n 61 THR 59 U GLY 60 n 62 GLY 60 U LEU 61 n 63 LEU 61 U LYS 62 n 64 LYS 62 U ILE 63 n 65 ILE 63 U THR 64 n 66 THR 64 U SER 65 n 67 SER 65 U LEU 66 n 68 LEU 66 U THR 67 n 69 THR 67 U GLU 68 n 70 GLU 68 U VAL 69 n 71 VAL 69 U VAL 70 n 72 VAL 70 U CYS 71 n 73 CYS 71 U GLY 72 n 74 GLY 72 U LEU 73 n 75 LEU 73 U ASP 74 n 76 ASP 74 U LEU 75 n 77 LEU 75 U CYS 76 n 78 CYS 76 U ASN 77 n 79 ASN 77 U GLN 78 n 80 GLN 78 U GLY 79 n 81 GLY 79 U ASN 80 n 82 ASN 80 U SER 81 n 83 SER 81 U GLY 82 n 84 GLY 82 U n 85 83 U n 86 84 U VAL 85 n 87 VAL 85 U THR 86 n 88 THR 86 U TYR 87 n 89 TYR 87 U SER 88 n 90 SER 88 U ARG 89 n 91 ARG 89 U SER 90 n 92 SER 90 U ARG 91 n 93 ARG 91 U TYR 92 n 94 TYR 92 U LEU 93 n 95 LEU 93 U GLU 94 n 96 GLU 94 U CYS 95 n 97 CYS 95 U ILE 96 n 98 ILE 96 U SER 97 n 99 SER 97 U CYS 98 n 100 CYS 98 U GLY 99 n 101 GLY 99 U SER 100 n 102 SER 100 U SER 101 n 103 SER 101 U ASP 102 n 104 ASP 102 U MET 103 n 105 MET 103 U SER 104 n 106 SER 104 U CYS 105 n 107 CYS 105 U GLU 106 n 108 GLU 106 U ARG 107 n 109 ARG 107 U GLY 108 n 110 GLY 108 U ARG 109 n 111 ARG 109 U HIS 110 n 112 HIS 110 U GLN 111 n 113 GLN 111 U SER 112 n 114 SER 112 U LEU 113 n 115 LEU 113 U GLN 114 n 116 GLN 114 U CYS 115 n 117 CYS 115 U ARG 116 n 118 ARG 116 U SER 117 n 119 SER 117 U PRO 118 n 120 PRO 118 U GLU 119 n 121 GLU 119 U GLU 120 n 122 GLU 120 U GLN 121 n 123 GLN 121 U CYS 122 n 124 CYS 122 U LEU 123 n 125 LEU 123 U ASP 124 n 126 ASP 124 U VAL 125 n 127 VAL 125 U VAL 126 n 128 VAL 126 U THR 127 n 129 THR 127 U HIS 128 n 130 HIS 128 U TRP 129 n 131 TRP 129 U ILE 130 n 132 ILE 130 U GLN 131 n 133 GLN 131 U GLU 132 n 134 GLU 132 U GLY 133 n 135 GLY 133 U GLU 134 n 136 GLU 134 U GLU 135 n 137 GLU 135 U GLY 136 n 138 GLY 136 U ARG 137 n 139 ARG 137 U PRO 138 n 140 PRO 138 U LYS 139 n 141 LYS 139 U ASP 140 n 142 ASP 140 U ASP 141 n 143 ASP 141 U ARG 142 n 144 ARG 142 U HIS 143 n 145 HIS 143 U LEU 144 n 146 LEU 144 U ARG 145 n 147 ARG 145 U GLY 146 n 148 GLY 146 U CYS 147 n 149 CYS 147 U GLY 148 n 150 GLY 148 U TYR 149 n 151 TYR 149 U LEU 150 n 152 LEU 150 U PRO 151 n 153 PRO 151 U GLY 152 n 154 GLY 152 U CYS 153 n 155 CYS 153 U PRO 154 n 156 PRO 154 U GLY 155 n 157 GLY 155 U SER 156 n 158 SER 156 U ASN 157 n 159 ASN 157 U GLY 158 n 160 GLY 158 U PHE 159 n 161 PHE 159 U HIS 160 n 162 HIS 160 U ASN 161 n 163 ASN 161 U ASN 162 n 164 ASN 162 U ASP 163 n 165 ASP 163 U THR 164 n 166 THR 164 U PHE 165 n 167 PHE 165 U HIS 166 n 168 HIS 166 U PHE 167 n 169 PHE 167 U LEU 168 n 170 LEU 168 U LYS 169 n 171 LYS 169 U CYS 170 n 172 CYS 170 U CYS 171 n 173 CYS 171 U ASN 172 n 174 ASN 172 U THR 173 n 175 THR 173 U THR 174 n 176 THR 174 U LYS 175 n 177 LYS 175 U CYS 176 n 178 CYS 176 U ASN 177 n 179 ASN 177 U GLU 178 n 180 GLU 178 U GLY 179 n 181 GLY 179 U PRO 180 n 182 PRO 180 U ILE 181 n 183 ILE 181 U LEU 182 n 184 LEU 182 U GLU 183 n 185 GLU 183 U LEU 184 n 186 LEU 184 U GLU 185 n 187 GLU 185 U ASN 186 n 188 ASN 186 U LEU 187 n 189 LEU 187 U PRO 188 n 190 PRO 188 U GLN 189 n 191 GLN 189 U ASN 190 n 192 ASN 190 U GLY 191 n 193 GLY 191 U ARG 192 n 194 ARG 192 U GLN 193 n 195 GLN 193 U CYS 194 n 196 CYS 194 U TYR 195 n 197 TYR 195 U SER 196 n 198 SER 196 U CYS 197 n 199 CYS 197 U LYS 198 n 200 LYS 198 U GLY 199 n 201 GLY 199 U ASN 200 n 202 ASN 200 U SER 201 n 203 SER 201 U THR 202 n 204 THR 202 U HIS 203 n 205 HIS 203 U GLY 204 n 206 GLY 204 U CYS 205 n 207 CYS 205 U SER 206 n 208 SER 206 U SER 207 n 209 SER 207 U GLU 208 n 210 GLU 208 U GLU 209 n 211 GLU 209 U THR 210 n 212 THR 210 U PHE 211 n 213 PHE 211 U LEU 212 n 214 LEU 212 U ILE 213 n 215 ILE 213 U ASP 214 n 216 ASP 214 U CYS 215 n 217 CYS 215 U ARG 216 n 218 ARG 216 U GLY 217 n 219 GLY 217 U PRO 218 n 220 PRO 218 U MET 219 n 221 MET 219 U ASN 220 n 222 ASN 220 U GLN 221 n 223 GLN 221 U CYS 222 n 224 CYS 222 U LEU 223 n 225 LEU 223 U VAL 224 n 226 VAL 224 U ALA 225 n 227 ALA 225 U THR 226 n 228 THR 226 U GLY 227 n 229 GLY 227 U THR 228 n 230 THR 228 U HIS 229 n 231 HIS 229 U GLU 230 n 232 GLU 230 U PRO 231 n 233 PRO 231 U LYS 232 n 234 LYS 232 U ASN 233 n 235 ASN 233 U GLN 234 n 236 GLN 234 U SER 235 n 237 SER 235 U TYR 236 n 238 TYR 236 U MET 237 n 239 MET 237 U VAL 238 n 240 VAL 238 U ARG 239 n 241 ARG 239 U GLY 240 n 242 GLY 240 U CYS 241 n 243 CYS 241 U ALA 242 n 244 ALA 242 U THR 243 n 245 THR 243 U ALA 244 n 246 ALA 244 U SER 245 n 247 SER 245 U MET 246 n 248 MET 246 U CYS 247 n 249 CYS 247 U GLN 248 n 250 GLN 248 U HIS 249 n 251 HIS 249 U ALA 250 n 252 ALA 250 U HIS 251 n 253 HIS 251 U LEU 252 n 254 LEU 252 U GLY 253 n 255 GLY 253 U ASP 254 n 256 ASP 254 U ALA 255 n 257 ALA 255 U PHE 256 n 258 PHE 256 U SER 257 n 259 SER 257 U MET 258 n 260 MET 258 U ASN 259 n 261 ASN 259 U HIS 260 n 262 HIS 260 U ILE 261 n 263 ILE 261 U ASP 262 n 264 ASP 262 U VAL 263 n 265 VAL 263 U SER 264 n 266 SER 264 U CYS 265 n 267 CYS 265 U CYS 266 n 268 CYS 266 U THR 267 n 269 THR 267 U LYS 268 n 270 LYS 268 U SER 269 n 271 SER 269 U GLY 270 n 272 GLY 270 U CYS 271 n 273 CYS 271 U ASN 272 n 274 ASN 272 U HIS 273 n 275 HIS 273 U PRO 274 n 276 PRO 274 U ASP 275 n 277 ASP 275 U n 278 276 U n 279 277 U n 280 278 U n 281 279 U n 282 280 U n 283 281 U 5.3627 0.9741 1.6251 -0.6560 2.9948 3.6246 -0.0501 -0.5488 -0.6942 -0.6807 0.0290 0.1128 0.7341 -0.6133 0.3410 2.1128 -0.3301 0.0829 1.9723 0.0154 2.4258 refined 30.6697 29.6905 52.7353 X-RAY DIFFRACTION 7.1548 -1.2400 -8.1171 0.4658 1.3574 9.2023 -2.6771 -3.1627 1.3568 0.4839 0.6504 -0.0612 0.6322 0.1250 2.2204 2.3569 -0.0374 -0.3173 3.4422 0.1099 2.4535 refined 16.8113 25.7080 82.1740 X-RAY DIFFRACTION 1.8017 -1.6905 0.0782 0.0348 -1.5974 4.8272 -0.1036 -0.0306 0.4133 -0.2336 0.7136 -0.1370 -0.5576 -0.3305 -0.6051 1.7406 -0.1827 0.1030 2.0830 -0.2058 2.3148 refined -2.2660 29.3461 54.0831 X-RAY DIFFRACTION -1.0037 -1.1663 0.3460 -0.0041 0.3374 9.9394 0.7267 1.3586 0.7132 -0.4628 -0.5035 -0.6677 0.5711 -0.1993 0.2034 2.4315 -0.2213 0.1944 3.4216 0.2833 2.4659 refined -41.9119 13.1353 16.8476 X-RAY DIFFRACTION 1.1690 -0.8838 4.4172 1.5560 0.3648 2.7252 -1.3838 1.3198 0.6265 -1.2440 -0.1814 0.9262 -2.0766 1.0930 0.2170 3.0456 -0.2477 -0.2211 3.6272 0.0905 2.6696 refined -46.0106 29.5362 9.3293 X-RAY DIFFRACTION X-RAY DIFFRACTION 1 chain 'A' X-RAY DIFFRACTION 2 chain 'B' X-RAY DIFFRACTION 3 chain 'U' X-RAY DIFFRACTION 4 chain 'H' X-RAY DIFFRACTION 5 chain 'L' author_defined_assembly 5 pentameric 9650 -29 41430 U ASN 172 GLYCOSYLATION SITE E ASN 174 ASN U ASN 200 GLYCOSYLATION SITE E ASN 202 ASN 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N THR 18 A N THR 20 A O ASN 32 A O ASN 34 A N GLY 38 A N GLY 40 A O ILE 44 A O ILE 46 A N CYS 113 A N CYS 115 A O GLN 124 A O GLN 126 H N GLN 3 C N GLN 3 H O SER 25 C O SER 25 H N CYS 22 C N CYS 22 H O ALA 78 C O ALA 79 H O THR 77 C O THR 78 H N ASP 72 C N ASP 73 H N GLU 10 C N GLU 10 H O SER 108 C O SER 114 H O VAL 109 C O VAL 115 H N ALA 88 C N ALA 92 H O VAL 89 C O VAL 93 H N GLN 39 C N GLN 39 H N LYS 38 C N LYS 38 H O GLU 46 C O GLU 46 H N ASN 52 C N ASN 52 H O GLY 56 C O GLY 57 H N VAL 18 C N VAL 18 H O PHE 82 C O PHE 83 H O GLN 81 C O GLN 82 H N THR 68 C N THR 69 H N TYR 122 C N TYR 128 H O LEU 141 C O LEU 147 H N TYR 145 C N TYR 151 H O TYR 175 C O TYR 181 H O SER 178 C O SER 184 H N PHE 166 C N PHE 172 H N VAL 136 C N VAL 142 H O VAL 183 C O VAL 189 H N THR 153 C N THR 159 H O ASN 196 C O ASN 202 H N CYS 195 C N CYS 201 H O LYS 208 C O LYS 214 L N THR 7 D N THR 7 L O SER 22 D O SER 22 L N CYS 23 D N CYS 23 L O PHE 71 D O PHE 76 L O LYS 74 D O LYS 79 L N THR 63 D N THR 68 L N VAL 13 D N VAL 13 L O LYS 107 D O LYS 112 L O THR 102 D O THR 107 L N TYR 86 D N TYR 91 L O VAL 85 D O VAL 90 L N GLN 38 D N GLN 43 L N LEU 37 D N LEU 42 L O LYS 45 D O LYS 50 L N GLN 90 D N GLN 95 L O THR 97 D O THR 102 L N ALA 130 D N ALA 135 L O LEU 181 D O LEU 186 L O THR 178 D O THR 183 L N LEU 160 D N LEU 165 L O SER 153 D O SER 158 L N ILE 150 D N ILE 155 L N LYS 147 D N LYS 152 L O GLU 195 D O GLU 200 L N CYS 194 D N CYS 199 L O LYS 207 D O LYS 212 U N GLN 5 E N GLN 7 U O ARG 13 E O ARG 15 U O THR 46 E O THR 48 U N LEU 23 E N LEU 25 U N ARG 30 E N ARG 32 U O SER 65 E O SER 67 U O THR 64 E O THR 66 U N TYR 57 E N TYR 59 U N SER 56 E N SER 58 U O CYS 147 E O CYS 149 U O ARG 145 E O ARG 147 U N CYS 98 E N CYS 100 U N SER 97 E N SER 99 U O GLN 111 E O GLN 113 U O VAL 69 E O VAL 71 U N THR 26 E N THR 28 U N ARG 30 E N ARG 32 U O SER 65 E O SER 67 U O THR 64 E O THR 66 U N TYR 57 E N TYR 59 U N SER 56 E N SER 58 U O CYS 147 E O CYS 149 U O GLY 148 E O GLY 150 U N GLN 121 E N GLN 123 U N HIS 128 E N HIS 130 U O PHE 165 E O PHE 167 U O LEU 168 E O LEU 170 U N ASN 157 E N ASN 159 U N HIS 160 E N HIS 162 U O CYS 241 E O CYS 243 U O ARG 239 E O ARG 241 U N CYS 197 E N CYS 199 U N ARG 192 E N ARG 194 U O CYS 215 E O CYS 217 U N HIS 128 E N HIS 130 U O PHE 165 E O PHE 167 U O LEU 168 E O LEU 170 U N ASN 157 E N ASN 159 U N HIS 160 E N HIS 162 U O CYS 241 E O CYS 243 U O ALA 242 E O ALA 244 U N GLN 221 E N GLN 223 U N THR 228 E N THR 230 U O ASN 259 E O ASN 261 1 C O1 NAG 1 F O1 NAG 1 1 N 1 U O1 MAN 303 H O1 MAN 1 1 N 1 A ARG -1 A ARG 1 1 Y 1 A SER 0 A SER 2 1 Y 1 A SER 1 A SER 3 1 Y 1 A ASN 2 A ASN 4 1 Y 1 A GLU 3 A GLU 5 1 Y 1 A LEU 4 A LEU 6 1 Y 1 A HIS 5 A HIS 7 1 Y 1 A GLN 6 A GLN 8 1 Y 1 A VAL 7 A VAL 9 1 Y 1 A ASP 133 A ASP 135 1 Y 1 H SER 128 C SER 134 1 Y 1 H ALA 129 C ALA 135 1 Y 1 H ALA 130 C ALA 136 1 Y 1 H GLN 131 C GLN 137 1 Y 1 H THR 132 C THR 138 1 Y 1 H ASN 133 C ASN 139 1 Y 1 H ARG 213 C ARG 219 1 Y 1 H ASP 214 C ASP 220 1 Y 1 H CYS 215 C CYS 221 1 Y 1 H GLY 216 C GLY 222 1 Y 1 H CYS 217 C CYS 223 1 Y 1 H LYS 218 C LYS 224 1 Y 1 H PRO 219 C PRO 225 1 Y 1 H CYS 220 C CYS 226 1 Y 1 H ILE 221 C ILE 227 1 Y 1 H CYS 222 C CYS 228 1 Y 1 L CYS 214 D CYS 219 1 Y 1 U ARG -1 E ARG 1 1 Y 1 U SER 0 E SER 2 1 Y 1 U ARG 83 E ARG 85 1 Y 1 U ALA 84 E ALA 86 1 Y 1 U LEU 276 E LEU 278 1 Y 1 U ASP 277 E ASP 279 1 Y 1 U VAL 278 E VAL 280 1 Y 1 U GLN 279 E GLN 281 1 Y 1 U TYR 280 E TYR 282 1 Y 1 U ARG 281 E ARG 283 1 Y 1 C U O4 C1 NAG MAN 2 303 1.09 1 U C ND2 C1 ASN NAG 52 1 1.60 1 U D NE2 O5 HIS NAG 203 1 1.68 1 A A CB SG CYS CYS 13 31 1.68 1 U U CB SG CYS CYS 266 271 1.73 1 C C O4 O5 NAG NAG 1 2 1.76 1 H H N OD2 THR ASP 83 86 1.77 B 1 H H NH1 O ARG SER 66 82 1.83 1 U U ND2 C2 ASN NAG 172 304 1.85 1 A A OH O TYR LYS 58 61 1.85 1 U U CB SG CYS CYS 3 24 1.85 1 A A O NH2 HIS ARG 56 59 1.90 1 H H O CD2 TYR HIS 97 99 1.93 1 U U O N LEU LEU 184 187 1.93 1 H L OG OG SER SER 178 176 1.96 1 U U O N LEU ASN 184 186 1.98 1 A A O N VAL GLN 79 82 1.98 1 H H NZ O LYS SER 13 113 1.99 1 U D CD2 O6 HIS NAG 203 1 2.00 1 U D ND2 C2 ASN NAG 200 1 2.00 1 B B OE1 OG GLN SER 2 4 2.02 1 L L OE2 OH GLU TYR 105 173 2.02 1 B B OD1 N ASP LEU 22 24 2.03 1 B B O N SER GLN 26 29 2.03 1 U U SG SG CYS CYS 3 24 2.03 1 A A NH1 OD2 ARG ASP 88 90 2.04 1 U D ND2 O5 ASN NAG 200 1 2.04 1 B B SG SG CYS CYS 5 32 2.05 1 U U OG OE1 SER GLU 100 106 2.06 1 L L NE2 OG1 GLN THR 90 97 2.08 A 1 H H O O SER VAL 95 100 2.08 1 H H N O THR PHE 117 146 2.09 1 U U O ND2 TYR ASN 195 272 2.10 1 D D O4 O5 NAG NAG 1 2 2.11 1 U U O N GLY SER 99 104 2.12 1 B B O N GLY CYS 7 9 2.12 1 U U O O LYS GLY 198 204 2.14 1 U U OG1 OG THR SER 243 245 2.14 1 U D NE2 C5 HIS NAG 203 1 2.16 1 U U ND2 N2 ASN NAG 172 304 2.18 1 L L OD1 O ASN TRP 34 89 2.19 1 C U O4 O5 NAG MAN 2 303 2.19 1 L L OE1 N GLN GLY 6 101 2.19 1 A A ARG SER 88 89 139.79 1 B B THR GLU 10 11 144.91 1 H H ILE ASN 51 52 -148.93 1 U U GLU LEU 37 38 -145.72 1 U U GLU PRO 230 231 -130.29 1 -17.16 2.70 111.00 93.84 A A A N CA C ARG ARG ARG 59 59 59 N 1 -15.30 2.30 115.30 100.00 A A A CA CB CG LEU LEU LEU 94 94 94 N 1 7.95 1.10 114.20 122.15 B B B CA CB SG CYS CYS CYS 32 32 32 N 1 12.81 1.50 119.30 132.11 B B B C N CA LYS PRO PRO 40 41 41 Y 1 12.91 1.90 113.40 126.31 H H H CA CB CG TYR TYR TYR 33 33 33 N A A 1 20.63 1.50 119.30 139.93 H H H C N CA ASN PRO PRO 52 52 52 Y A A 1 -20.46 2.10 128.40 107.94 H H H C N CD ASN PRO PRO 52 52 52 Y 1 -11.70 1.90 111.40 99.70 H H H CB CA C VAL VAL VAL 111 111 111 N 1 15.81 1.50 119.30 135.11 H H H C N CA PHE PRO PRO 166 167 167 Y 1 -15.56 2.10 128.40 112.84 H H H C N CD PHE PRO PRO 166 167 167 Y C C C 1 -15.85 2.30 115.30 99.45 L L L CA CB CG LEU LEU LEU 27 27 27 N 1 -11.93 1.90 111.40 99.47 U U U CB CA C VAL VAL VAL 41 41 41 N 1 9.04 1.50 119.30 128.34 U U U C N CA SER PRO PRO 117 118 118 Y 1 12.60 1.50 119.30 131.90 U U U C N CA GLY PRO PRO 217 218 218 Y 1 -13.49 2.10 128.40 114.91 U U U C N CD GLY PRO PRO 217 218 218 Y 1 A H OE1 O GLN GLY 93 55 2.11 1_555 3_555 1 A CYS 11 43.52 -152.69 1 A SER 26 43.90 19.80 1 A LYS 35 54.21 -102.46 1 A LYS 36 -43.70 -11.99 1 A SER 47 -148.82 -63.30 1 A THR 49 -72.06 -71.49 1 A ASN 54 68.29 -14.93 1 A TYR 58 -48.53 101.99 1 A LYS 61 -75.28 -154.80 1 A ALA 62 77.46 77.55 1 A ARG 69 -63.59 -171.17 1 A PRO 70 -76.67 -169.67 1 A ALA 77 -47.78 -74.59 1 A THR 78 -59.40 -6.81 1 A LEU 80 -58.47 -9.53 1 A GLN 82 -75.89 -169.50 1 A THR 83 -73.09 -79.08 1 A SER 89 38.87 -102.56 1 A LYS 98 -59.82 -1.91 1 A PRO 105 -101.56 53.26 1 A ARG 109 -48.67 -77.37 1 A PRO 111 -60.29 -171.71 1 A TRP 112 -172.27 -176.79 1 A PRO 121 -47.93 151.30 1 B GLU 3 -88.74 -75.91 1 B SER 4 38.67 66.99 1 B ARG 8 55.75 -17.23 1 B CYS 9 57.44 -17.91 1 B LYS 17 170.75 164.91 1 B ALA 37 -56.36 -72.80 1 H TYR 27 175.98 178.47 1 H THR 30 -57.37 -7.71 1 H LYS 43 -135.38 -70.63 1 H ASN 52 -151.78 84.20 A 1 H PRO 52 -11.33 -48.63 1 H TYR 53 -78.05 -76.17 1 H THR 70 176.01 168.32 B 1 H SER 82 32.81 114.08 1 H ALA 88 -171.05 -169.03 1 H SER 95 -84.61 -77.63 1 H HIS 99 42.50 28.97 1 H SER 100 32.38 -143.75 A 1 H VAL 100 63.50 96.47 1 H ASP 101 -134.46 -68.13 1 H SER 112 -165.79 -168.49 1 H SER 113 -80.31 -73.78 1 H PHE 146 -176.54 142.17 1 H SER 160 -123.94 -74.82 1 H GLN 171 173.35 162.73 1 H SER 190 -70.96 -72.29 1 L SER 26 -57.01 -70.30 E 1 L SER 27 -52.85 -1.86 1 L VAL 51 64.47 -10.19 1 L SER 52 -136.82 -60.02 1 L ASN 138 62.53 74.73 1 L LYS 169 -82.12 -75.58 1 L SER 171 65.70 -6.58 1 L ASN 190 -131.35 -62.61 1 L ALA 196 -165.39 -167.93 1 U CYS 3 -163.94 -167.90 1 U ALA 18 42.34 -135.34 1 U LEU 19 -130.16 -65.33 1 U GLU 34 49.44 -143.80 1 U GLU 37 177.50 159.21 1 U THR 54 -116.57 -73.82 1 U LEU 55 54.77 82.78 1 U THR 67 168.55 156.34 1 U LEU 75 59.08 77.55 1 U SER 81 -124.82 -76.69 1 U ARG 89 -58.45 -73.10 1 U VAL 125 -39.77 133.39 1 U ILE 130 -81.67 -77.09 1 U GLN 131 -133.93 -72.49 1 U GLU 134 -125.47 -79.08 1 U ARG 137 82.54 163.40 1 U PRO 138 -48.93 156.08 1 U ASN 161 -174.72 -177.10 1 U CYS 171 176.56 161.24 1 U GLU 178 -66.85 -175.83 1 U LEU 184 61.23 -98.92 1 U GLU 185 -34.11 -23.54 1 U HIS 203 62.32 -20.98 1 U GLU 208 -88.22 -72.19 1 U PRO 218 -49.24 -15.37 1 U HIS 229 -113.00 -165.76 1 U GLU 230 -54.05 -170.56 1 U PRO 231 -51.30 70.38 1 U HIS 249 50.21 -143.03 1 U SER 257 60.45 73.43 1 U HIS 260 39.78 66.14 1 U THR 267 -61.99 -71.15 284.9089 13.4400 0.0000 -0.0000 13.4400 -0.0000 -26.8800 0.2751 0.2174 0.2200 4.50 26.902 602 12432 4.84 99.28 1.000 1.000 0.51 1 1.34 MOLECULAR REPLACEMENT 30.96 0.90 1.11 3BT2(chain A, B, U), 4K23(chain H, L) ML FLAT BULK SOLVENT MODEL 4.50 26.902 0 6771 81 0 6690 0.013 6948 2.017 9371 20.414 2544 0.132 1034 0.008 1208 0.2792 0.2535 4.9343 158 2880 99.00 0.2991 0.2405 5.6425 155 2940 100.00 0.2762 0.2246 7.0874 139 2971 100.00 0.2666 0.2000 26.9029 150 3039 99.00 4.500 27.000 4K24 12451 0.139 1 7.900 4.400 99.700 0.841 4.500 4.660 1 4.500 100.000 0.628 4.660 4.850 1 4.600 100.000 0.489 4.850 5.060 1 4.500 100.000 0.444 5.060 5.330 1 4.500 100.000 0.414 5.330 5.660 1 4.500 99.900 0.301 5.660 6.090 1 4.500 99.800 0.233 6.090 6.700 1 4.500 99.900 0.151 6.700 7.650 1 4.400 99.700 0.081 7.650 9.560 1 4.100 99.100 0.053 9.560 27.000 1 3.700 98.300 data scaling Zbyszek Otwinowski hkl@hkl-xray.com http://www.hkl-xray.com/ SCALEPACK program refinement Paul D. Adams PDAdams@lbl.gov C++ http://www.phenix-online.org/ PHENIX package 1.8.1_1168 data extraction PDB deposit@deposit.rcsb.org April 22, 2011 C++ http://sw-tools.pdb.org/apps/PDB_EXTRACT/ PDB_EXTRACT package 3.11 data collection HKL-2000 data reduction HKL-2000 data scaling HKL-2000 phasing MOLREP Structure of anti-uPAR Fab ATN-658 in complex with uPAR 1 N N 2 N N 3 N N 4 N N 5 N N 6 N N 6 N N 7 N N 8 N N A GLU 52 A GLU 54 HELX_P A HIS 56 A HIS 58 5 1 5 A SER 76 A SER 78 HELX_P A GLN 81 A GLN 83 1 2 6 A ASP 90 A ASP 92 HELX_P A GLY 95 A GLY 97 5 3 6 B LEU 24 B LEU 23 HELX_P B GLN 29 B GLN 28 5 4 6 B ASP 34 B ASP 33 HELX_P B CYS 39 B CYS 38 1 5 6 H SER 28 C SER 28 HELX_P H TYR 32 C TYR 32 5 6 5 H ASN 60 C ASN 61 HELX_P H LYS 64 C LYS 65 5 7 5 H THR 83 C THR 87 HELX_P H SER 87 C SER 91 5 8 5 L VAL 51 D VAL 56 HELX_P L LYS 53 D LYS 58 5 9 3 L SER 121 D SER 126 HELX_P L GLY 128 D GLY 133 1 10 8 L THR 182 D THR 187 HELX_P L GLU 187 D GLU 192 1 11 6 U HIS 229 E HIS 231 HELX_P U ASN 233 E ASN 235 5 12 5 U THR 243 E THR 245 HELX_P U GLN 248 E GLN 250 1 13 6 U HIS 251 E HIS 253 HELX_P U PHE 256 E PHE 258 1 14 6 disulf 2.045 A CYS 11 A SG CYS 13 1_555 A CYS 19 A SG CYS 21 1_555 disulf 2.031 A CYS 13 A SG CYS 15 1_555 A CYS 31 A SG CYS 33 1_555 disulf 2.032 A CYS 33 A SG CYS 35 1_555 A CYS 42 A SG CYS 44 1_555 disulf 2.028 A CYS 50 A SG CYS 52 1_555 A CYS 131 A SG CYS 133 1_555 disulf 2.049 A CYS 71 A SG CYS 73 1_555 A CYS 113 A SG CYS 115 1_555 disulf 2.034 A CYS 102 A SG CYS 104 1_555 A CYS 126 A SG CYS 128 1_555 disulf 2.042 B CYS 5 B SG CYS 4 1_555 B CYS 21 B SG CYS 20 1_555 disulf 2.030 B CYS 9 B SG CYS 8 1_555 B CYS 39 B SG CYS 38 1_555 disulf 2.035 B CYS 19 B SG CYS 18 1_555 B CYS 32 B SG CYS 31 1_555 disulf 2.015 B CYS 25 B SG CYS 24 1_555 B CYS 31 B SG CYS 30 1_555 disulf 2.040 H CYS 22 C SG CYS 22 1_555 H CYS 92 C SG CYS 96 1_555 disulf 2.043 H CYS 140 C SG CYS 146 1_555 H CYS 195 C SG CYS 201 1_555 disulf 2.025 L CYS 23 D SG CYS 23 1_555 L CYS 88 D SG CYS 93 1_555 disulf 2.043 L CYS 134 D SG CYS 139 1_555 L CYS 194 D SG CYS 199 1_555 disulf 2.030 U CYS 3 E SG CYS 5 1_555 U CYS 17 E SG CYS 19 1_555 disulf 2.040 U CYS 6 E SG CYS 8 1_555 U CYS 12 E SG CYS 14 1_555 disulf 2.032 U CYS 17 E SG CYS 19 1_555 U CYS 45 E SG CYS 47 1_555 disulf 2.027 U CYS 71 E SG CYS 73 1_555 U CYS 76 E SG CYS 78 1_555 disulf 2.023 U CYS 95 E SG CYS 97 1_555 U CYS 122 E SG CYS 124 1_555 disulf 2.033 U CYS 98 E SG CYS 100 1_555 U CYS 105 E SG CYS 107 1_555 disulf 2.040 U CYS 115 E SG CYS 117 1_555 U CYS 147 E SG CYS 149 1_555 disulf 2.035 U CYS 153 E SG CYS 155 1_555 U CYS 170 E SG CYS 172 1_555 disulf 2.039 U CYS 171 E SG CYS 173 1_555 U CYS 176 E SG CYS 178 1_555 disulf 2.021 U CYS 194 E SG CYS 196 1_555 U CYS 222 E SG CYS 224 1_555 disulf 2.039 U CYS 197 E SG CYS 199 1_555 U CYS 205 E SG CYS 207 1_555 disulf 2.047 U CYS 215 E SG CYS 217 1_555 U CYS 241 E SG CYS 243 1_555 disulf 2.033 U CYS 247 E SG CYS 249 1_555 U CYS 265 E SG CYS 267 1_555 disulf 2.034 U CYS 266 E SG CYS 268 1_555 U CYS 271 E SG CYS 273 1_555 covale 1.356 one N-Glycosylation U ASN 172 E ND2 ASN 174 1_555 U NAG 304 I C1 NAG 1_555 covale 1.519 one N-Glycosylation U ASN 200 E ND2 ASN 202 1_555 D NAG 1 G C1 NAG 1_555 covale 1.283 both C NAG 1 F O4 NAG 1_555 C NAG 2 F C1 NAG 1_555 covale 1.530 both D NAG 1 G O4 NAG 1_555 D NAG 2 G C1 NAG 1_555 IMMUNE SYSTEM IMMUNE SYSTEM H SER 95 C SER 99 1 H ILE 96 C ILE 100 -16.93 H ILE 96 C ILE 100 1 H TYR 97 C TYR 101 -5.43 H PHE 146 C PHE 152 1 H PRO 147 C PRO 153 -1.11 H GLU 148 C GLU 154 1 H PRO 149 C PRO 155 2.87 H TRP 188 C TRP 194 1 H PRO 189 C PRO 195 -6.57 L THR 7 D THR 7 1 L PRO 8 D PRO 8 -1.01 L PHE 94 D PHE 99 1 L PRO 95 D PRO 100 0.15 L TYR 140 D TYR 145 1 L PRO 141 D PRO 146 0.21 UROK_HUMAN UNP 1 21 P00749 SNELHQVPSNCDCLNGGTCVSNKYFSNIHWCNCPKKFGGQHCEIDKSKTCYEGNGHFYRGKASTDTMGRPCLPWNSATVL QQTYHAHRSDALQLGLGKHNYCRNPDNRRRPWCYVQVGLKPLVQECMVHDCAD VTNC_HUMAN UNP 2 21 P04004 QESCKGRCTEGFNVDKKCQCDELCSYYQSCCTDYTAECKP UPAR_HUMAN UNP 5 23 Q03405 LRCMQCKTNGDCRVEECALGQDLCRTTIVRLWEEGEELELVEKSCTHSEKTNRTLSYRTGLKITSLTEVVCGLDLCNQGN SGRAVTYSRSRYLECISCGSSDMSCERGRHQSLQCRSPEEQCLDVVTHWIQEGEEGRPKDDRHLRGCGYLPGCPGSNGFH NNDTFHFLKCCNTTKCNEGPILELENLPQNGRQCYSCKGNSTHGCSSEETFLIDCRGPMNQCLVATGTHEPKNQSYMVRG CATASMCQHAHLGDAFSMNHIDVSCCTKSGCNHPDLDVQYR 4K24 PDB 3 4K24 4K24 PDB 4 4K24 21 153 4K24 1 133 P00749 A 1 3 135 21 60 4K24 2 41 P04004 B 2 1 40 23 303 4K24 1 281 Q03405 U 3 3 283 1 222 4K24 1 222 4K24 H 4 1 228 1 214 4K24 1 214 4K24 L 5 1 219 1 expression tag ARG -1 4K24 A P00749 UNP 1 1 expression tag SER 0 4K24 A P00749 UNP 2 3 expression tag ARG -1 4K24 U Q03405 UNP 1 3 expression tag SER 0 4K24 U Q03405 UNP 2 2 2 2 4 6 3 4 2 3 4 5 2 3 4 2 7 6 6 6 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A THR 18 A THR 20 A SER 21 A SER 23 A HIS 29 A HIS 31 A ASN 32 A ASN 34 A PHE 37 A PHE 39 A GLY 38 A GLY 40 A ILE 44 A ILE 46 A ASP 45 A ASP 47 A TRP 112 A TRP 114 A TYR 114 A TYR 116 A VAL 123 A VAL 125 A GLU 125 A GLU 127 H GLN 3 C GLN 3 H GLN 6 C GLN 6 H CYS 22 C CYS 22 H SER 25 C SER 25 H THR 77 C THR 78 H ALA 78 C ALA 79 H VAL 71 C VAL 72 H ASP 72 C ASP 73 H GLU 10 C GLU 10 H VAL 12 C VAL 12 H SER 108 C SER 114 H VAL 111 C VAL 117 H ALA 88 C ALA 92 H TYR 91 C TYR 95 H MET 34 C MET 34 H SER 40 C SER 40 H SER 44 C SER 44 H ASN 52 C ASN 52 H GLY 56 C GLY 57 H ALA 57 C ALA 58 H VAL 18 C VAL 18 H LYS 19 C LYS 19 H GLN 81 C GLN 82 H PHE 82 C PHE 83 H ALA 67 C ALA 68 H THR 68 C THR 69 H SER 120 C SER 126 H TYR 122 C TYR 128 H CYS 140 C CYS 146 H TYR 145 C TYR 151 H LEU 174 C LEU 180 H SER 180 C SER 186 H HIS 164 C HIS 170 H GLN 171 C GLN 177 H MET 135 C MET 141 H THR 137 C THR 143 H THR 182 C THR 188 H PRO 184 C PRO 190 H THR 151 C THR 157 H TRP 154 C TRP 160 H THR 194 C THR 200 H HIS 199 C HIS 205 H THR 204 C THR 210 H LYS 209 C LYS 215 L MET 4 D MET 4 L THR 7 D THR 7 L SER 22 D SER 22 L SER 25 D SER 25 L ASP 70 D ASP 75 L ILE 75 D ILE 80 L PHE 62 D PHE 67 L SER 67 D SER 72 L THR 10 D THR 10 L THR 14 D THR 14 L THR 102 D THR 107 L LYS 107 D LYS 112 L GLY 84 D GLY 89 L TYR 87 D TYR 92 L ASN 34 D ASN 39 L GLN 38 D GLN 43 L LYS 45 D LYS 50 L TYR 49 D TYR 54 L TRP 89 D TRP 94 L GLN 90 D GLN 95 L THR 97 D THR 102 L PHE 98 D PHE 103 L ALA 130 D ALA 135 L PHE 139 D PHE 144 L TYR 173 D TYR 178 L LEU 181 D LEU 186 L VAL 159 D VAL 164 L TRP 163 D TRP 168 L SER 153 D SER 158 L ARG 155 D ARG 160 L ASN 145 D ASN 150 L ILE 150 D ILE 155 L TYR 192 D TYR 197 L THR 197 D THR 202 L VAL 206 D VAL 211 L LYS 207 D LYS 212 U CYS 3 E CYS 5 U CYS 6 E CYS 8 U CYS 12 E CYS 14 U GLU 15 E GLU 17 U GLU 37 E GLU 39 U THR 46 E THR 48 U LEU 23 E LEU 25 U GLU 33 E GLU 35 U LYS 62 E LYS 64 U SER 65 E SER 67 U SER 56 E SER 58 U ARG 58 E ARG 60 U LEU 144 E LEU 146 U GLY 148 E GLY 150 U ILE 96 E ILE 98 U GLY 99 E GLY 101 U GLN 111 E GLN 113 U SER 112 E SER 114 U GLU 68 E GLU 70 U CYS 71 E CYS 73 U LEU 23 E LEU 25 U GLU 33 E GLU 35 U LYS 62 E LYS 64 U SER 65 E SER 67 U SER 56 E SER 58 U ARG 58 E ARG 60 U LEU 144 E LEU 146 U GLY 148 E GLY 150 U GLN 121 E GLN 123 U LEU 123 E LEU 125 U VAL 126 E VAL 128 U HIS 128 E HIS 130 U THR 164 E THR 166 U LEU 168 E LEU 170 U ASN 157 E ASN 159 U ASN 161 E ASN 163 U MET 237 E MET 239 U ALA 242 E ALA 244 U GLN 189 E GLN 191 U GLY 199 E GLY 201 U PHE 211 E PHE 213 U ARG 216 E ARG 218 U VAL 126 E VAL 128 U HIS 128 E HIS 130 U THR 164 E THR 166 U LEU 168 E LEU 170 U ASN 157 E ASN 159 U ASN 161 E ASN 163 U MET 237 E MET 239 U ALA 242 E ALA 244 U GLN 221 E GLN 223 U THR 228 E THR 230 U ASN 259 E ASN 261 U CYS 266 E CYS 268 155 H 3 2