0.010042 0.000000 0.000000 -0.000000 0.024686 0.000000 0.000000 -0.000000 0.016444 0.000000 0.000000 0.000000 Joint Center for Structural Genomics (JCSG) http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.000 90.000 90.000 99.577 40.509 60.813 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking Cl -1 35.453 CHLORIDE ION non-polymer C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C3 H8 O3 92.094 GLYCEROL GLYCERIN; PROPANE-1,2,3-TRIOL non-polymer C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 Se 196.106 n SELENOMETHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking O4 S -2 96.063 SULFATE ION non-polymer C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking To be published 0353 Crystal structure of a putative TonB-dependent receptor (PA5505) from Pseudomonas aeruginosa PAO1 at 1.60 A resolution 10.2210/pdb4k3f/pdb pdb_00004k3f 100 1 Rhodium-coated vertical and horizontal focusing mirrors; liquid-nitrogen cooled double crystal Si(111) monochromator PIXEL 2013-04-01 DECTRIS PILATUS 6M double crystal Si(111) MAD M x-ray 1 0.8265 1.0 0.9794 1.0 0.9792 1.0 BL12-2 SSRL 0.8265,0.9794,0.9792 SYNCHROTRON SSRL BEAMLINE BL12-2 26221.766 Probable TonB-dependent receptor 1 man polymer 196.106 SELENOMETHIONINE 1 syn non-polymer 35.453 CHLORIDE ION 1 syn non-polymer 96.063 SULFATE ION 2 syn non-polymer 92.094 GLYCEROL 5 syn non-polymer 18.015 water 257 nat water no yes GAESLTVAATPVPHAEILNVVKPLLAKEGVDLKIKEFTDYVQPNVQVSEKRLDANFFQHQPYLDEFNKAKGTDLVAVTGV HIEPLGAYSSKYKKLDELPSGATVVIPNDATNGGRALLLLDKAGVIKLKDNKSITATPKDIVDNPKNIKIRELEAATLPR VLTQVD(MSE)ALINTNYALEAKLNPTKDALAIEGSDSPYVNILVARPDNKDSDA(MSE)QKLAKALHSAEIKQFIQEKY KGAVVPAF GAESLTVAATPVPHAEILNVVKPLLAKEGVDLKIKEFTDYVQPNVQVSEKRLDANFFQHQPYLDEFNKAKGTDLVAVTGV HIEPLGAYSSKYKKLDELPSGATVVIPNDATNGGRALLLLDKAGVIKLKDNKSITATPKDIVDNPKNIKIRELEAATLPR VLTQVDMALINTNYALEAKLNPTKDALAIEGSDSPYVNILVARPDNKDSDAMQKLAKALHSAEIKQFIQEKYKGAVVPAF A JCSG-417287 polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n PAO1 sample PA5505 208964 Pseudomonas aeruginosa 562 Escherichia Coli PB1 Plasmid SpeedET 1 2.34 47.41 VAPOR DIFFUSION, SITTING DROP 7.0 3.20M ammonium sulfate, 0.7% n-Butanol, 0.1M HEPES pH 7.0, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 293K 293 Joint Center for Structural Genomics JCSG PSI:Biology software citation_author database_2 struct_conn struct_ref_seq_dif struct_site repository Initial release Refinement description Database references Database references Derived calculations 1 0 2013-04-24 1 1 2017-11-15 1 2 2018-01-24 1 3 2023-02-01 _software.classification _software.name _citation_author.name _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_conn.pdbx_leaving_atom_flag _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id Y RCSB Y RCSB 2013-04-10 REL REL MSE SELENOMETHIONINE CL CHLORIDE ION SO4 SULFATE ION GOL GLYCEROL HOH water THIS CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY RESIDUES 22-260 OF THE TARGET SEQUENCE. MSE 300 2 MSE MSE 300 A CL 301 3 CL CL 301 A SO4 302 4 SO4 SO4 302 A SO4 303 4 SO4 SO4 303 A GOL 304 5 GOL GOL 304 A GOL 305 5 GOL GOL 305 A GOL 306 5 GOL GOL 306 A GOL 307 5 GOL GOL 307 A GOL 308 5 GOL GOL 308 A HOH 309 6 HOH HOH 401 A HOH 310 6 HOH HOH 402 A HOH 311 6 HOH HOH 403 A HOH 312 6 HOH HOH 404 A HOH 313 6 HOH HOH 405 A HOH 314 6 HOH HOH 406 A HOH 315 6 HOH HOH 407 A HOH 316 6 HOH HOH 408 A HOH 317 6 HOH HOH 409 A HOH 318 6 HOH HOH 410 A HOH 319 6 HOH HOH 411 A HOH 320 6 HOH HOH 412 A HOH 321 6 HOH HOH 413 A HOH 322 6 HOH HOH 414 A HOH 323 6 HOH HOH 415 A HOH 324 6 HOH HOH 416 A HOH 325 6 HOH HOH 417 A HOH 326 6 HOH HOH 418 A HOH 327 6 HOH HOH 419 A HOH 328 6 HOH HOH 420 A HOH 329 6 HOH HOH 421 A HOH 330 6 HOH HOH 422 A HOH 331 6 HOH HOH 423 A HOH 332 6 HOH HOH 424 A HOH 333 6 HOH HOH 425 A HOH 334 6 HOH HOH 426 A HOH 335 6 HOH HOH 427 A HOH 336 6 HOH HOH 428 A HOH 337 6 HOH HOH 429 A HOH 338 6 HOH HOH 430 A HOH 339 6 HOH HOH 431 A HOH 340 6 HOH HOH 432 A HOH 341 6 HOH HOH 433 A HOH 342 6 HOH HOH 434 A HOH 343 6 HOH HOH 435 A HOH 344 6 HOH HOH 436 A HOH 345 6 HOH HOH 437 A HOH 346 6 HOH HOH 438 A HOH 347 6 HOH HOH 439 A HOH 348 6 HOH HOH 440 A HOH 349 6 HOH HOH 441 A HOH 350 6 HOH HOH 442 A HOH 351 6 HOH HOH 443 A HOH 352 6 HOH HOH 444 A HOH 353 6 HOH HOH 445 A HOH 354 6 HOH HOH 446 A HOH 355 6 HOH HOH 447 A HOH 356 6 HOH HOH 448 A HOH 357 6 HOH HOH 449 A HOH 358 6 HOH HOH 450 A HOH 359 6 HOH HOH 451 A HOH 360 6 HOH HOH 452 A HOH 361 6 HOH HOH 453 A HOH 362 6 HOH HOH 454 A HOH 363 6 HOH HOH 455 A HOH 364 6 HOH HOH 456 A HOH 365 6 HOH HOH 457 A HOH 366 6 HOH HOH 458 A HOH 367 6 HOH HOH 459 A HOH 368 6 HOH HOH 460 A HOH 369 6 HOH HOH 461 A HOH 370 6 HOH HOH 462 A HOH 371 6 HOH HOH 463 A HOH 372 6 HOH HOH 464 A HOH 373 6 HOH HOH 465 A HOH 374 6 HOH HOH 466 A HOH 375 6 HOH HOH 467 A HOH 376 6 HOH HOH 468 A HOH 377 6 HOH HOH 469 A HOH 378 6 HOH HOH 470 A HOH 379 6 HOH HOH 471 A HOH 380 6 HOH HOH 472 A HOH 381 6 HOH HOH 473 A HOH 382 6 HOH HOH 474 A HOH 383 6 HOH HOH 475 A HOH 384 6 HOH HOH 476 A HOH 385 6 HOH HOH 477 A HOH 386 6 HOH HOH 478 A HOH 387 6 HOH HOH 479 A HOH 388 6 HOH HOH 480 A HOH 389 6 HOH HOH 481 A HOH 390 6 HOH HOH 482 A HOH 391 6 HOH HOH 483 A HOH 392 6 HOH HOH 484 A HOH 393 6 HOH HOH 485 A HOH 394 6 HOH HOH 486 A HOH 395 6 HOH HOH 487 A HOH 396 6 HOH HOH 488 A HOH 397 6 HOH HOH 489 A HOH 398 6 HOH HOH 490 A HOH 399 6 HOH HOH 491 A HOH 400 6 HOH HOH 492 A HOH 401 6 HOH HOH 493 A HOH 402 6 HOH HOH 494 A HOH 403 6 HOH HOH 495 A HOH 404 6 HOH HOH 496 A HOH 405 6 HOH HOH 497 A HOH 406 6 HOH HOH 498 A HOH 407 6 HOH HOH 499 A HOH 408 6 HOH HOH 500 A HOH 409 6 HOH HOH 501 A HOH 410 6 HOH HOH 502 A HOH 411 6 HOH HOH 503 A HOH 412 6 HOH HOH 504 A HOH 413 6 HOH HOH 505 A HOH 414 6 HOH HOH 506 A HOH 415 6 HOH HOH 507 A HOH 416 6 HOH HOH 508 A HOH 417 6 HOH HOH 509 A HOH 418 6 HOH HOH 510 A HOH 419 6 HOH HOH 511 A HOH 420 6 HOH HOH 512 A HOH 421 6 HOH HOH 513 A HOH 422 6 HOH HOH 514 A HOH 423 6 HOH HOH 515 A HOH 424 6 HOH HOH 516 A HOH 425 6 HOH HOH 517 A HOH 426 6 HOH HOH 518 A HOH 427 6 HOH HOH 519 A HOH 428 6 HOH HOH 520 A HOH 429 6 HOH HOH 521 A HOH 430 6 HOH HOH 522 A HOH 431 6 HOH HOH 523 A HOH 432 6 HOH HOH 524 A HOH 433 6 HOH HOH 525 A HOH 434 6 HOH HOH 526 A HOH 435 6 HOH HOH 527 A HOH 436 6 HOH HOH 528 A HOH 437 6 HOH HOH 529 A HOH 438 6 HOH HOH 530 A HOH 439 6 HOH HOH 531 A HOH 440 6 HOH HOH 532 A HOH 441 6 HOH HOH 533 A HOH 442 6 HOH HOH 534 A HOH 443 6 HOH HOH 535 A HOH 444 6 HOH HOH 536 A HOH 445 6 HOH HOH 537 A HOH 446 6 HOH HOH 538 A HOH 447 6 HOH HOH 539 A HOH 448 6 HOH HOH 540 A HOH 449 6 HOH HOH 541 A HOH 450 6 HOH HOH 542 A HOH 451 6 HOH HOH 543 A HOH 452 6 HOH HOH 544 A HOH 453 6 HOH HOH 545 A HOH 454 6 HOH HOH 546 A HOH 455 6 HOH HOH 547 A HOH 456 6 HOH HOH 548 A HOH 457 6 HOH HOH 549 A HOH 458 6 HOH HOH 550 A HOH 459 6 HOH HOH 551 A HOH 460 6 HOH HOH 552 A HOH 461 6 HOH HOH 553 A HOH 462 6 HOH HOH 554 A HOH 463 6 HOH HOH 555 A HOH 464 6 HOH HOH 556 A HOH 465 6 HOH HOH 557 A HOH 466 6 HOH HOH 558 A HOH 467 6 HOH HOH 559 A HOH 468 6 HOH HOH 560 A HOH 469 6 HOH HOH 561 A HOH 470 6 HOH HOH 562 A HOH 471 6 HOH HOH 563 A HOH 472 6 HOH HOH 564 A HOH 473 6 HOH HOH 565 A HOH 474 6 HOH HOH 566 A HOH 475 6 HOH HOH 567 A HOH 476 6 HOH HOH 568 A HOH 477 6 HOH HOH 569 A HOH 478 6 HOH HOH 570 A HOH 479 6 HOH HOH 571 A HOH 480 6 HOH HOH 572 A HOH 481 6 HOH HOH 573 A HOH 482 6 HOH HOH 574 A HOH 483 6 HOH HOH 575 A HOH 484 6 HOH HOH 576 A HOH 485 6 HOH HOH 577 A HOH 486 6 HOH HOH 578 A HOH 487 6 HOH HOH 579 A HOH 488 6 HOH HOH 580 A HOH 489 6 HOH HOH 581 A HOH 490 6 HOH HOH 582 A HOH 491 6 HOH HOH 583 A HOH 492 6 HOH HOH 584 A HOH 493 6 HOH HOH 585 A HOH 494 6 HOH HOH 586 A HOH 495 6 HOH HOH 587 A HOH 496 6 HOH HOH 588 A HOH 497 6 HOH HOH 589 A HOH 498 6 HOH HOH 590 A HOH 499 6 HOH HOH 591 A HOH 500 6 HOH HOH 592 A HOH 501 6 HOH HOH 593 A HOH 502 6 HOH HOH 594 A HOH 503 6 HOH HOH 595 A HOH 504 6 HOH HOH 596 A HOH 505 6 HOH HOH 597 A HOH 506 6 HOH HOH 598 A HOH 507 6 HOH HOH 599 A HOH 508 6 HOH HOH 600 A HOH 509 6 HOH HOH 601 A HOH 510 6 HOH HOH 602 A HOH 511 6 HOH HOH 603 A HOH 512 6 HOH HOH 604 A HOH 513 6 HOH HOH 605 A HOH 514 6 HOH HOH 606 A HOH 515 6 HOH HOH 607 A HOH 516 6 HOH HOH 608 A HOH 517 6 HOH HOH 609 A HOH 518 6 HOH HOH 610 A HOH 519 6 HOH HOH 611 A HOH 520 6 HOH HOH 612 A HOH 521 6 HOH HOH 613 A HOH 522 6 HOH HOH 614 A HOH 523 6 HOH HOH 615 A HOH 524 6 HOH HOH 616 A HOH 525 6 HOH HOH 617 A HOH 526 6 HOH HOH 618 A HOH 527 6 HOH HOH 619 A HOH 528 6 HOH HOH 620 A HOH 529 6 HOH HOH 621 A HOH 530 6 HOH HOH 622 A HOH 531 6 HOH HOH 623 A HOH 532 6 HOH HOH 624 A HOH 533 6 HOH HOH 625 A HOH 534 6 HOH HOH 626 A HOH 535 6 HOH HOH 627 A HOH 536 6 HOH HOH 628 A HOH 537 6 HOH HOH 629 A HOH 538 6 HOH HOH 630 A HOH 539 6 HOH HOH 631 A HOH 540 6 HOH HOH 632 A HOH 541 6 HOH HOH 633 A HOH 542 6 HOH HOH 634 A HOH 543 6 HOH HOH 635 A HOH 544 6 HOH HOH 636 A HOH 545 6 HOH HOH 637 A HOH 546 6 HOH HOH 638 A HOH 547 6 HOH HOH 639 A HOH 548 6 HOH HOH 640 A HOH 549 6 HOH HOH 641 A HOH 550 6 HOH HOH 642 A HOH 551 6 HOH HOH 643 A HOH 552 6 HOH HOH 644 A HOH 553 6 HOH HOH 645 A HOH 554 6 HOH HOH 646 A HOH 555 6 HOH HOH 647 A HOH 556 6 HOH HOH 648 A HOH 557 6 HOH HOH 649 A HOH 558 6 HOH HOH 650 A HOH 559 6 HOH HOH 651 A HOH 560 6 HOH HOH 652 A HOH 561 6 HOH HOH 653 A HOH 562 6 HOH HOH 654 A HOH 563 6 HOH HOH 655 A HOH 564 6 HOH HOH 656 A HOH 565 6 HOH HOH 657 A GLY 0 n 1 GLY 0 A ALA 22 n 2 ALA 22 A GLU 23 n 3 GLU 23 A SER 24 n 4 SER 24 A LEU 25 n 5 LEU 25 A THR 26 n 6 THR 26 A VAL 27 n 7 VAL 27 A ALA 28 n 8 ALA 28 A ALA 29 n 9 ALA 29 A THR 30 n 10 THR 30 A PRO 31 n 11 PRO 31 A VAL 32 n 12 VAL 32 A PRO 33 n 13 PRO 33 A HIS 34 n 14 HIS 34 A ALA 35 n 15 ALA 35 A GLU 36 n 16 GLU 36 A ILE 37 n 17 ILE 37 A LEU 38 n 18 LEU 38 A ASN 39 n 19 ASN 39 A VAL 40 n 20 VAL 40 A VAL 41 n 21 VAL 41 A LYS 42 n 22 LYS 42 A PRO 43 n 23 PRO 43 A LEU 44 n 24 LEU 44 A LEU 45 n 25 LEU 45 A ALA 46 n 26 ALA 46 A LYS 47 n 27 LYS 47 A GLU 48 n 28 GLU 48 A GLY 49 n 29 GLY 49 A VAL 50 n 30 VAL 50 A ASP 51 n 31 ASP 51 A LEU 52 n 32 LEU 52 A LYS 53 n 33 LYS 53 A ILE 54 n 34 ILE 54 A LYS 55 n 35 LYS 55 A GLU 56 n 36 GLU 56 A PHE 57 n 37 PHE 57 A THR 58 n 38 THR 58 A ASP 59 n 39 ASP 59 A TYR 60 n 40 TYR 60 A VAL 61 n 41 VAL 61 A GLN 62 n 42 GLN 62 A PRO 63 n 43 PRO 63 A ASN 64 n 44 ASN 64 A VAL 65 n 45 VAL 65 A GLN 66 n 46 GLN 66 A VAL 67 n 47 VAL 67 A SER 68 n 48 SER 68 A GLU 69 n 49 GLU 69 A LYS 70 n 50 LYS 70 A ARG 71 n 51 ARG 71 A LEU 72 n 52 LEU 72 A ASP 73 n 53 ASP 73 A ALA 74 n 54 ALA 74 A ASN 75 n 55 ASN 75 A PHE 76 n 56 PHE 76 A PHE 77 n 57 PHE 77 A GLN 78 n 58 GLN 78 A HIS 79 n 59 HIS 79 A GLN 80 n 60 GLN 80 A PRO 81 n 61 PRO 81 A TYR 82 n 62 TYR 82 A LEU 83 n 63 LEU 83 A ASP 84 n 64 ASP 84 A GLU 85 n 65 GLU 85 A PHE 86 n 66 PHE 86 A ASN 87 n 67 ASN 87 A LYS 88 n 68 LYS 88 A ALA 89 n 69 ALA 89 A LYS 90 n 70 LYS 90 A GLY 91 n 71 GLY 91 A THR 92 n 72 THR 92 A ASP 93 n 73 ASP 93 A LEU 94 n 74 LEU 94 A VAL 95 n 75 VAL 95 A ALA 96 n 76 ALA 96 A VAL 97 n 77 VAL 97 A THR 98 n 78 THR 98 A GLY 99 n 79 GLY 99 A VAL 100 n 80 VAL 100 A HIS 101 n 81 HIS 101 A ILE 102 n 82 ILE 102 A GLU 103 n 83 GLU 103 A PRO 104 n 84 PRO 104 A LEU 105 n 85 LEU 105 A GLY 106 n 86 GLY 106 A ALA 107 n 87 ALA 107 A TYR 108 n 88 TYR 108 A SER 109 n 89 SER 109 A SER 110 n 90 SER 110 A LYS 111 n 91 LYS 111 A TYR 112 n 92 TYR 112 A LYS 113 n 93 LYS 113 A LYS 114 n 94 LYS 114 A LEU 115 n 95 LEU 115 A ASP 116 n 96 ASP 116 A GLU 117 n 97 GLU 117 A LEU 118 n 98 LEU 118 A PRO 119 n 99 PRO 119 A SER 120 n 100 SER 120 A GLY 121 n 101 GLY 121 A ALA 122 n 102 ALA 122 A THR 123 n 103 THR 123 A VAL 124 n 104 VAL 124 A VAL 125 n 105 VAL 125 A ILE 126 n 106 ILE 126 A PRO 127 n 107 PRO 127 A ASN 128 n 108 ASN 128 A ASP 129 n 109 ASP 129 A ALA 130 n 110 ALA 130 A THR 131 n 111 THR 131 A ASN 132 n 112 ASN 132 A GLY 133 n 113 GLY 133 A GLY 134 n 114 GLY 134 A ARG 135 n 115 ARG 135 A ALA 136 n 116 ALA 136 A LEU 137 n 117 LEU 137 A LEU 138 n 118 LEU 138 A LEU 139 n 119 LEU 139 A LEU 140 n 120 LEU 140 A ASP 141 n 121 ASP 141 A LYS 142 n 122 LYS 142 A ALA 143 n 123 ALA 143 A GLY 144 n 124 GLY 144 A VAL 145 n 125 VAL 145 A ILE 146 n 126 ILE 146 A LYS 147 n 127 LYS 147 A LEU 148 n 128 LEU 148 A LYS 149 n 129 LYS 149 A ASP 150 n 130 ASP 150 A ASN 151 n 131 ASN 151 A LYS 152 n 132 LYS 152 A SER 153 n 133 SER 153 A ILE 154 n 134 ILE 154 A THR 155 n 135 THR 155 A ALA 156 n 136 ALA 156 A THR 157 n 137 THR 157 A PRO 158 n 138 PRO 158 A LYS 159 n 139 LYS 159 A ASP 160 n 140 ASP 160 A ILE 161 n 141 ILE 161 A VAL 162 n 142 VAL 162 A ASP 163 n 143 ASP 163 A ASN 164 n 144 ASN 164 A PRO 165 n 145 PRO 165 A LYS 166 n 146 LYS 166 A ASN 167 n 147 ASN 167 A ILE 168 n 148 ILE 168 A LYS 169 n 149 LYS 169 A ILE 170 n 150 ILE 170 A ARG 171 n 151 ARG 171 A GLU 172 n 152 GLU 172 A LEU 173 n 153 LEU 173 A GLU 174 n 154 GLU 174 A ALA 175 n 155 ALA 175 A ALA 176 n 156 ALA 176 A THR 177 n 157 THR 177 A LEU 178 n 158 LEU 178 A PRO 179 n 159 PRO 179 A ARG 180 n 160 ARG 180 A VAL 181 n 161 VAL 181 A LEU 182 n 162 LEU 182 A THR 183 n 163 THR 183 A GLN 184 n 164 GLN 184 A VAL 185 n 165 VAL 185 A ASP 186 n 166 ASP 186 A MSE 187 n 167 MSE 187 A ALA 188 n 168 ALA 188 A LEU 189 n 169 LEU 189 A ILE 190 n 170 ILE 190 A ASN 191 n 171 ASN 191 A THR 192 n 172 THR 192 A ASN 193 n 173 ASN 193 A TYR 194 n 174 TYR 194 A ALA 195 n 175 ALA 195 A LEU 196 n 176 LEU 196 A GLU 197 n 177 GLU 197 A ALA 198 n 178 ALA 198 A LYS 199 n 179 LYS 199 A LEU 200 n 180 LEU 200 A ASN 201 n 181 ASN 201 A PRO 202 n 182 PRO 202 A THR 203 n 183 THR 203 A LYS 204 n 184 LYS 204 A ASP 205 n 185 ASP 205 A ALA 206 n 186 ALA 206 A LEU 207 n 187 LEU 207 A ALA 208 n 188 ALA 208 A ILE 209 n 189 ILE 209 A GLU 210 n 190 GLU 210 A GLY 211 n 191 GLY 211 A SER 212 n 192 SER 212 A ASP 213 n 193 ASP 213 A SER 214 n 194 SER 214 A PRO 215 n 195 PRO 215 A TYR 216 n 196 TYR 216 A VAL 217 n 197 VAL 217 A ASN 218 n 198 ASN 218 A ILE 219 n 199 ILE 219 A LEU 220 n 200 LEU 220 A VAL 221 n 201 VAL 221 A ALA 222 n 202 ALA 222 A ARG 223 n 203 ARG 223 A PRO 224 n 204 PRO 224 A ASP 225 n 205 ASP 225 A ASN 226 n 206 ASN 226 A LYS 227 n 207 LYS 227 A ASP 228 n 208 ASP 228 A SER 229 n 209 SER 229 A ASP 230 n 210 ASP 230 A ALA 231 n 211 ALA 231 A MSE 232 n 212 MSE 232 A GLN 233 n 213 GLN 233 A LYS 234 n 214 LYS 234 A LEU 235 n 215 LEU 235 A ALA 236 n 216 ALA 236 A LYS 237 n 217 LYS 237 A ALA 238 n 218 ALA 238 A LEU 239 n 219 LEU 239 A HIS 240 n 220 HIS 240 A SER 241 n 221 SER 241 A ALA 242 n 222 ALA 242 A GLU 243 n 223 GLU 243 A ILE 244 n 224 ILE 244 A LYS 245 n 225 LYS 245 A GLN 246 n 226 GLN 246 A PHE 247 n 227 PHE 247 A ILE 248 n 228 ILE 248 A GLN 249 n 229 GLN 249 A GLU 250 n 230 GLU 250 A LYS 251 n 231 LYS 251 A TYR 252 n 232 TYR 252 A LYS 253 n 233 LYS 253 A GLY 254 n 234 GLY 254 A ALA 255 n 235 ALA 255 A VAL 256 n 236 VAL 256 A VAL 257 n 237 VAL 257 A PRO 258 n 238 PRO 258 A ALA 259 n 239 ALA 259 A PHE 260 n 240 PHE 260 A 0.1378 0.0644 0.0397 0.4739 0.2792 0.7150 -0.0001 -0.0080 -0.0068 0.0321 -0.0199 0.0453 -0.0216 -0.0580 0.0200 0.0138 0.0084 0.0088 0.0096 0.0021 0.0107 refined 15.3590 8.7600 12.8430 X-RAY DIFFRACTION A 0 A 260 X-RAY DIFFRACTION 1 author_and_software_defined_assembly PISA 1 monomeric A MSE 187 SELENOMETHIONINE A MSE 167 MET A MSE 232 SELENOMETHIONINE A MSE 212 MET 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O ASP 51 A O ASP 31 A N GLU 23 A N GLU 3 A N ALA 28 A N ALA 8 A O PHE 76 A O PHE 56 A N ASN 75 A N ASN 55 A O VAL 221 A O VAL 201 A O ASN 218 A O ASN 198 A N HIS 101 A N HIS 81 A N ILE 102 A N ILE 82 A O VAL 257 A O VAL 237 A O ARG 171 A O ARG 151 A N VAL 124 A N VAL 104 A N VAL 125 A N VAL 105 A O MSE 187 A O MSE 167 A O ALA 188 A O ALA 168 A N TYR 108 A N TYR 88 A N ALA 107 A N ALA 87 A O ALA 208 A O ALA 188 A N LYS 147 A N LYS 127 A O VAL 162 A O VAL 142 1 A HOH 499 K HOH 1 A CG LYS 113 A CG LYS 93 1 Y 1 A CD LYS 113 A CD LYS 93 1 Y 1 A CE LYS 113 A CE LYS 93 1 Y 1 A NZ LYS 113 A NZ LYS 93 1 Y 1 A CG LYS 159 A CG LYS 139 1 Y 1 A CD LYS 159 A CD LYS 139 1 Y 1 A CE LYS 159 A CE LYS 139 1 Y 1 A NZ LYS 159 A NZ LYS 139 1 Y 1 A A O O HOH HOH 568 636 2.17 1 A PHE 77 -167.34 -16.68 1 A VAL 100 -120.74 -55.15 1 A ALA 222 -147.09 -151.19 93.630 22.2558 9.350 0.9500 -0.0000 -0.0000 -0.6800 -0.0000 -0.2800 0.9740 0.9650 1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2. ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B FACTORS. 3. ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U FACTORS. 4. WATERS WERE EXCLUDED FROM AUTOMATIC TLS ASSIGNMENT. 5. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 6. SULFATE ION (SO4) AND GLYCEROL (GOL) MOLECULES FROM THE CRYSTALLIZATION/CRYOPROTECTION SOLUTION ARE MODELED. 7. A SELENOMETHIONINE AMINO ACID IS BOUND TO THE PROTEIN. ANOMALOUS DIFFERENCE FOURIER MAP CONFIRMS THIS METHIONINE TO BE SELENOMETHIONINE. 0.1847 0.1506 0.1523 1.6000 29.135 1641 32319 5.1000 97.0700 1.000 0.300 2.9450 0.0550 RANDOM 1 THROUGHOUT 0.000 MAD 0.0790 0.0820 0.8000 0.8000 1.2000 MAXIMUM LIKELIHOOD WITH PHASES BABINET MODEL WITH MASK 1.6000 29.135 257 2139 50 0 1832 0.012 0.019 2004 0.001 0.020 2013 1.536 2.013 2729 0.812 3.000 4669 5.903 5.000 261 42.163 26.329 79 13.063 15.000 354 15.994 15.000 6 0.097 0.200 326 0.008 0.021 2248 0.001 0.020 386 1.826 3.077 1007 1.827 3.078 1006 2.415 5.766 1269 0.3590 0.2770 1.6410 129 2242 2371 20 98.3800 19.747 1.60 29.135 4K3F 32359 -3.000 0.056 1 9.160 92.400 0.467 1.600 1.660 1.9 11216 6048 1 92.100 0.396 1.660 1.720 2.3 9814 5320 1 93.300 0.298 1.720 1.800 3.0 10914 6029 1 93.400 0.231 1.800 1.900 3.9 10830 6052 1 91.600 0.159 1.900 2.020 5.6 11279 5967 1 94.500 0.105 2.020 2.170 8.2 10712 5667 1 93.800 0.074 2.170 2.390 10.3 10417 5811 1 91.600 0.059 2.390 2.730 13.0 11324 5838 1 94.000 0.040 2.730 3.440 17.8 10814 5764 1 91.000 0.025 3.440 26.4 11142 5655 1 88.900 model building D.C. & J.S. Richardson lab molprobity@kinemage.biochem.duke.edu http://kinemage.biochem.duke.edu/molprobity/ MolProbity package 3beta29 data extraction PDB deposit@deposit.rcsb.org June 10, 2010 C++ http://sw-tools.pdb.org/apps/PDB_EXTRACT/ PDB_EXTRACT package 3.10 phasing George M. Sheldrick gsheldr@shelx.uni-ac.gwdg.de Fortran_77 http://shelx.uni-ac.gwdg.de/SHELX/ SHELX package phasing Eric de La Fortelle sharp-develop@globalphasing.com http://www.globalphasing.com/sharp/ SHARP package data scaling Wolfgang Kabsch http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html XSCALE package July 4, 2012 refinement Garib N. Murshudov garib@ysbl.york.ac.uk Fortran_77 http://www.ccp4.ac.uk/dist/html/refmac5.html REFMAC program 5.7.0032 data reduction XDS phasing SHELXD Crystal structure of a putative TonB-dependent receptor (PA5505) from Pseudomonas aeruginosa PAO1 at 1.60 A resolution 1 N N 2 N N 3 N N 4 N N 4 N N 5 N N 5 N N 5 N N 5 N N 5 N N 6 N N CRYSTAL PACKING ANALYSIS SUGGESTS THE ASSIGNMENT OF A MONOMER AS THE SIGNIFICANT OLIGOMERIZATION STATE. A PRO 33 A PRO 13 HELX_P A LYS 47 A LYS 27 1 1 15 A VAL 61 A VAL 41 HELX_P A GLU 69 A GLU 49 1 2 9 A GLN 80 A GLN 60 HELX_P A GLY 91 A GLY 71 1 3 12 A LYS 114 A LYS 94 HELX_P A LEU 118 A LEU 98 5 4 5 A ASP 129 A ASP 109 HELX_P A ALA 143 A ALA 123 1 5 15 A THR 157 A THR 137 HELX_P A LYS 159 A LYS 139 5 6 3 A GLU 174 A GLU 154 HELX_P A ALA 176 A ALA 156 5 7 3 A THR 177 A THR 157 HELX_P A LEU 182 A LEU 162 1 8 6 A THR 183 A THR 163 HELX_P A VAL 185 A VAL 165 5 9 3 A ASN 191 A ASN 171 HELX_P A ALA 198 A ALA 178 1 10 8 A ASN 201 A ASN 181 HELX_P A ALA 206 A ALA 186 1 11 6 A SER 229 A SER 209 HELX_P A LEU 239 A LEU 219 1 12 11 A SER 241 A SER 221 HELX_P A LYS 253 A LYS 233 1 13 13 covale 1.349 both A ASP 186 A C ASP 166 1_555 A MSE 187 A N MSE 167 1_555 covale 1.327 both A MSE 187 A C MSE 167 1_555 A ALA 188 A N ALA 168 1_555 covale 1.348 both A ALA 231 A C ALA 211 1_555 A MSE 232 A N MSE 212 1_555 covale 1.327 both A MSE 232 A C MSE 212 1_555 A GLN 233 A N GLN 213 1_555 TRANSPORT PROTEIN Periplasmic methionine binding protein, NLPA lipoprotein, PF03180 family, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-BIOLOGY, TRANSPORT PROTEIN A VAL 32 A VAL 12 1 A PRO 33 A PRO 13 1.24 Q9HT68_PSEAE UNP 1 22 Q9HT68 AESLTVAATPVPHAEILNVVKPLLAKEGVDLKIKEFTDYVQPNVQVSEKRLDANFFQHQPYLDEFNKAKGTDLVAVTGVH IEPLGAYSSKYKKLDELPSGATVVIPNDATNGGRALLLLDKAGVIKLKDNKSITATPKDIVDNPKNIKIRELEAATLPRV LTQVDMALINTNYALEAKLNPTKDALAIEGSDSPYVNILVARPDNKDSDAMQKLAKALHSAEIKQFIQEKYKGAVVPAF 22 260 4K3F 22 260 Q9HT68 A 1 2 240 1 expression tag GLY 0 4K3F A Q9HT68 UNP 1 6 5 2 parallel parallel anti-parallel anti-parallel anti-parallel parallel parallel anti-parallel anti-parallel anti-parallel A VAL 50 A VAL 30 A GLU 56 A GLU 36 A GLU 23 A GLU 3 A ALA 29 A ALA 9 A ALA 74 A ALA 54 A HIS 79 A HIS 59 A ASN 218 A ASN 198 A ALA 222 A ALA 202 A VAL 95 A VAL 75 A ILE 102 A ILE 82 A VAL 257 A VAL 237 A PRO 258 A PRO 238 A LYS 169 A LYS 149 A LEU 173 A LEU 153 A THR 123 A THR 103 A PRO 127 A PRO 107 A MSE 187 A MSE 167 A ILE 190 A ILE 170 A GLY 106 A GLY 86 A TYR 108 A TYR 88 A ALA 208 A ALA 188 A ILE 209 A ILE 189 A LYS 147 A LYS 127 A LEU 148 A LEU 128 A ILE 161 A ILE 141 A ASP 163 A ASP 143 BINDING SITE FOR RESIDUE CL A 301 A CL 301 Software 5 BINDING SITE FOR RESIDUE SO4 A 302 A SO4 302 Software 8 BINDING SITE FOR RESIDUE SO4 A 303 A SO4 303 Software 3 BINDING SITE FOR RESIDUE GOL A 304 A GOL 304 Software 9 BINDING SITE FOR RESIDUE GOL A 305 A GOL 305 Software 9 BINDING SITE FOR RESIDUE GOL A 306 A GOL 306 Software 5 BINDING SITE FOR RESIDUE GOL A 307 A GOL 307 Software 5 BINDING SITE FOR RESIDUE GOL A 308 A GOL 308 Software 3 A SER 68 A SER 48 5 1_555 A THR 92 A THR 72 5 1_555 A ASP 93 A ASP 73 5 1_555 A HOH 524 K HOH 5 1_555 A HOH 635 K HOH 5 1_555 A LYS 149 A LYS 129 8 3_546 A ASP 150 A ASP 130 8 3_546 A ARG 171 A ARG 151 8 1_555 A HOH 439 K HOH 8 3_546 A HOH 479 K HOH 8 3_546 A HOH 480 K HOH 8 1_555 A HOH 498 K HOH 8 1_555 A HOH 628 K HOH 8 1_555 A LYS 147 A LYS 127 3 3_546 A LYS 169 A LYS 149 3 1_555 A ARG 171 A ARG 151 3 1_555 A LYS 142 A LYS 122 9 1_555 A GLU 210 A GLU 190 9 1_555 A GLY 211 A GLY 191 9 1_555 A ASP 213 A ASP 193 9 1_555 A SER 214 A SER 194 9 1_555 A PRO 215 A PRO 195 9 1_555 A HOH 434 K HOH 9 1_555 A HOH 620 K HOH 9 1_555 A HOH 621 K HOH 9 1_555 A SER 24 A SER 4 9 3_555 A LEU 25 A LEU 5 9 3_555 A ASP 84 A ASP 64 9 1_555 A SER 229 A SER 209 9 3_555 A MSE 232 A MSE 212 9 3_555 A HOH 435 K HOH 9 3_555 A HOH 597 K HOH 9 1_555 A HOH 614 K HOH 9 1_555 A HOH 641 K HOH 9 1_555 A GLU 36 A GLU 16 5 1_555 A GLU 36 A GLU 16 5 2_555 A ASN 39 A ASN 19 5 2_555 A ASN 39 A ASN 19 5 1_555 A LYS 251 A LYS 231 5 1_555 A ASN 39 A ASN 19 5 1_555 A ILE 54 A ILE 34 5 1_555 A GLU 56 A GLU 36 5 1_555 A GLU 250 A GLU 230 5 2_555 A HOH 583 K HOH 5 2_555 A HIS 240 A HIS 220 3 1_555 A HOH 547 K HOH 3 1_555 A HOH 595 K HOH 3 1_555 18 P 21 21 2