0.023480 0.000000 0.000000 0.000000 0.014239 0.000000 0.000000 0.000000 0.013951 0.000000 0.000000 0.000000 Cho, Y.-J. Kerns, S.J. Kern, D. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.000 90.000 90.000 42.590 70.230 71.680 C10 H15 N5 O10 P2 427.201 n ADENOSINE-5'-DIPHOSPHATE non-polymer C3 H7 N O2 89.093 y ALANINE L-peptide linking C10 H14 N5 O7 P 347.221 ADENOSINE MONOPHOSPHATE non-polymer C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking O4 P -3 94.971 PHOSPHATE ION non-polymer C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N P N 2 N O N 3 N O N 4 N O N 5 S P N 6 N O N 7 N O N 8 N O N 9 N O N 10 N C N 11 R C N 12 N O N 13 S C N 14 N O N 15 R C N 16 N O N 17 R C Y 18 N N Y 19 N C Y 20 N N Y 21 N C Y 22 N C N 23 N N Y 24 N N Y 25 N C Y 26 N N Y 27 N C N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N H N 42 N H N 43 N N N 44 S C N 45 N C N 46 N O N 47 N C N 48 N O N 49 N H N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N P N 57 N O N 58 N O N 59 N O N 60 N O N 61 N C N 62 R C N 63 N O N 64 S C N 65 N O N 66 R C N 67 N O N 68 R C Y 69 N N Y 70 N C Y 71 N N Y 72 N C Y 73 N C N 74 N N Y 75 N N Y 76 N C Y 77 N N Y 78 N C N 79 N H N 80 N H N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N N N 94 S C N 95 N C N 96 N O N 97 N C N 98 N C N 99 N C N 100 N N N 101 N C N 102 N N N 103 N N N 104 N O N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N H N 114 N H N 115 N H N 116 N H N 117 N H N 118 N H N 119 N H N 120 N N N 121 S C N 122 N C N 123 N O N 124 N C N 125 N C N 126 N O N 127 N N N 128 N O N 129 N H N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C N 142 N C N 143 N O N 144 N O N 145 N O N 146 N H N 147 N H N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N N N 154 R C N 155 N C N 156 N O N 157 N C N 158 N S N 159 N O N 160 N H N 161 N H N 162 N H N 163 N H N 164 N H N 165 N H N 166 N H N 167 N N N 168 S C N 169 N C N 170 N O N 171 N C N 172 N C N 173 N C N 174 N O N 175 N N N 176 N O N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N N N 188 S C N 189 N C N 190 N O N 191 N C N 192 N C N 193 N C N 194 N O N 195 N O N 196 N O N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N N N 207 N C N 208 N C N 209 N O N 210 N O N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N N N 217 S C N 218 N C N 219 N O N 220 N C Y 221 N C Y 222 N N Y 223 N C Y 224 N C Y 225 N N N 226 N O N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N H N 237 N O N 238 N H N 239 N H N 240 N N N 241 S C N 242 N C N 243 N O N 244 S C N 245 N C N 246 N C N 247 N C N 248 N O N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N H N 260 N H N 261 N H N 262 N N N 263 S C N 264 N C N 265 N O N 266 N C N 267 N C N 268 N C N 269 N C N 270 N O N 271 N H N 272 N H N 273 N H N 274 N H N 275 N H N 276 N H N 277 N H N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N N N 285 S C N 286 N C N 287 N O N 288 N C N 289 N C N 290 N C N 291 N C N 292 N N N 293 N O N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N H N 306 N H N 307 N H N 308 N H N 309 N N N 310 S C N 311 N C N 312 N O N 313 N C N 314 N C N 315 N S N 316 N C N 317 N O N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 N H N 326 N H N 327 N H N 328 N H N 329 N N N 330 S C N 331 N C N 332 N O N 333 N C Y 334 N C Y 335 N C Y 336 N C Y 337 N C Y 338 N C Y 339 N C N 340 N O N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 352 N P N 353 N O N 354 N O N 355 N O N 356 N O N 357 N N N 358 S C N 359 N C N 360 N O N 361 N C N 362 N C N 363 N C N 364 N O N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N H N 374 N N N 375 S C N 376 N C N 377 N O N 378 N C N 379 N O N 380 N O N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N N N 389 S C N 390 N C N 391 N O N 392 R C N 393 N O N 394 N C N 395 N O N 396 N H N 397 N H N 398 N H N 399 N H N 400 N H N 401 N H N 402 N H N 403 N H N 404 N H N 405 N N N 406 S C N 407 N C N 408 N O N 409 N C Y 410 N C Y 411 N C Y 412 N C Y 413 N C Y 414 N C Y 415 N C N 416 N O N 417 N O N 418 N H N 419 N H N 420 N H N 421 N H N 422 N H N 423 N H N 424 N H N 425 N H N 426 N H N 427 N H N 428 N H N 429 N N N 430 S C N 431 N C N 432 N O N 433 N C N 434 N C N 435 N C N 436 N O N 437 N H N 438 N H N 439 N H N 440 N H N 441 N H N 442 N H N 443 N H N 444 N H N 445 N H N 446 N H N 447 N H N 1 N doub N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing Y 30 N sing Y 31 N sing Y 32 N doub N 33 N sing Y 34 N sing Y 35 N sing Y 36 N doub N 37 N sing Y 38 N doub N 39 N sing N 40 N sing Y 41 N sing Y 42 N doub N 43 N sing Y 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N doub N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N doub N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N sing N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing Y 81 N sing Y 82 N sing Y 83 N doub N 84 N sing Y 85 N sing Y 86 N sing Y 87 N doub N 88 N sing Y 89 N doub N 90 N sing N 91 N sing Y 92 N sing Y 93 N doub N 94 N sing Y 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N doub N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N doub N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N doub N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N doub N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N doub N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N doub N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N doub N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N doub N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N doub N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N doub N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N doub N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N doub N 219 N sing N 220 N sing N 221 N sing N 222 N sing Y 223 N sing Y 224 N doub Y 225 N doub N 226 N sing Y 227 N sing N 228 N sing Y 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N doub N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N doub N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N doub N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N doub N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N doub N 327 N sing N 328 N sing N 329 N sing N 330 N sing Y 331 N doub Y 332 N sing Y 333 N sing N 334 N sing Y 335 N doub N 336 N sing Y 337 N doub N 338 N sing Y 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N doub N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N doub N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N doub N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N doub N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N sing N 397 N sing N 398 N sing N 399 N doub N 400 N sing N 401 N sing N 402 N sing N 403 N sing Y 404 N doub Y 405 N sing Y 406 N sing N 407 N sing Y 408 N doub N 409 N sing Y 410 N doub N 411 N sing Y 412 N sing N 413 N sing N 414 N sing N 415 N sing N 416 N sing N 417 N sing N 418 N sing N 419 N sing N 420 N sing N 421 N sing N 422 N sing N 423 N doub N 424 N sing N 425 N sing N 426 N sing N 427 N sing N 428 N sing N 429 N sing N 430 N sing N 431 N sing N 432 N sing N 433 N sing N 434 N sing To be Published 0353 Alike but Different: Adenylate kinases from E. Coli, Aquifex, and P. profundum 10.2210/pdb4k46/pdb pdb_00004k46 100 1 CCD ADSC QUANTUM 315r SINGLE WAVELENGTH M x-ray 1 0.979306 1.0 5.0.2 ALS 0.979306 SYNCHROTRON ALS BEAMLINE 5.0.2 23032.230 Adenylate kinase 2.7.4.3 1 man polymer 427.201 ADENOSINE-5'-DIPHOSPHATE 1 syn non-polymer 347.221 ADENOSINE MONOPHOSPHATE 1 syn non-polymer 94.971 PHOSPHATE ION 1 syn non-polymer 18.015 water 199 nat water AK, ATP-AMP transphosphorylase no no MRIILLGAPGAGKGTQAQFIMAKFGIPQISTGDMLRAAIKAGTELGKQAKSVIDAGQLVSDDIILGLVKERIAQDDCAKG FLLDGFPRTIPQADGLKEVGVVVDYVIEFDVADSVIVERMAGRRAHLASGRTYHNVYNPPKVEGKDDVTGEDLVIREDDK EETVLARLGVYHNQTAPLIAYYGKEAEAGNTQYLKFDGTKAVAEVSAELEKALA MRIILLGAPGAGKGTQAQFIMAKFGIPQISTGDMLRAAIKAGTELGKQAKSVIDAGQLVSDDIILGLVKERIAQDDCAKG FLLDGFPRTIPQADGLKEVGVVVDYVIEFDVADSVIVERMAGRRAHLASGRTYHNVYNPPKVEGKDDVTGEDLVIREDDK EETVLARLGVYHNQTAPLIAYYGKEAEAGNTQYLKFDGTKAVAEVSAELEKALA A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n sample adk, PBPRA1024 74109 Photobacterium profundum 562 Escherichia coli 1 2.33 47.15 VAPOR DIFFUSION, HANGING DROP 7.9 2.3M ammonium sulfate, 100mM imidazole, pH 7.9, VAPOR DIFFUSION, HANGING DROP, temperature 291K 291 chem_comp_atom chem_comp_bond database_2 struct_site repository Initial release Data collection Database references Derived calculations 1 0 2014-07-16 1 1 2024-02-28 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id Very homologous proteins but Different species (E. coli vs. P. profundum) Adks RCSB Y RCSB 2013-04-12 REL REL ADP ADENOSINE-5'-DIPHOSPHATE AMP ADENOSINE MONOPHOSPHATE PO4 PHOSPHATE ION HOH water ADP 1 2 ADP ADP 301 A AMP 1 3 AMP AMP 302 A PO4 1 4 PO4 PO4 303 A HOH 1 5 HOH HOH 401 A HOH 2 5 HOH HOH 402 A HOH 3 5 HOH HOH 403 A HOH 4 5 HOH HOH 404 A HOH 5 5 HOH HOH 405 A HOH 6 5 HOH HOH 406 A HOH 7 5 HOH HOH 407 A HOH 8 5 HOH HOH 408 A HOH 9 5 HOH HOH 409 A HOH 10 5 HOH HOH 410 A HOH 11 5 HOH HOH 411 A HOH 12 5 HOH HOH 412 A HOH 13 5 HOH HOH 413 A HOH 14 5 HOH HOH 414 A HOH 15 5 HOH HOH 415 A HOH 16 5 HOH HOH 416 A HOH 17 5 HOH HOH 417 A HOH 18 5 HOH HOH 418 A HOH 19 5 HOH HOH 419 A HOH 20 5 HOH HOH 420 A HOH 21 5 HOH HOH 421 A HOH 22 5 HOH HOH 422 A HOH 23 5 HOH HOH 423 A HOH 24 5 HOH HOH 424 A HOH 25 5 HOH HOH 425 A HOH 26 5 HOH HOH 426 A HOH 27 5 HOH HOH 427 A HOH 28 5 HOH HOH 428 A HOH 29 5 HOH HOH 429 A HOH 30 5 HOH HOH 430 A HOH 31 5 HOH HOH 431 A HOH 32 5 HOH HOH 432 A HOH 33 5 HOH HOH 433 A HOH 34 5 HOH HOH 434 A HOH 35 5 HOH HOH 435 A HOH 36 5 HOH HOH 436 A HOH 37 5 HOH HOH 437 A HOH 38 5 HOH HOH 438 A HOH 39 5 HOH HOH 439 A HOH 40 5 HOH HOH 440 A HOH 41 5 HOH HOH 441 A HOH 42 5 HOH HOH 442 A HOH 43 5 HOH HOH 443 A HOH 44 5 HOH HOH 444 A HOH 45 5 HOH HOH 445 A HOH 46 5 HOH HOH 446 A HOH 47 5 HOH HOH 447 A HOH 48 5 HOH HOH 448 A HOH 49 5 HOH HOH 449 A HOH 50 5 HOH HOH 450 A HOH 51 5 HOH HOH 451 A HOH 52 5 HOH HOH 452 A HOH 53 5 HOH HOH 453 A HOH 54 5 HOH HOH 454 A HOH 55 5 HOH HOH 455 A HOH 56 5 HOH HOH 456 A HOH 57 5 HOH HOH 457 A HOH 58 5 HOH HOH 458 A HOH 59 5 HOH HOH 459 A HOH 60 5 HOH HOH 460 A HOH 61 5 HOH HOH 461 A HOH 62 5 HOH HOH 462 A HOH 63 5 HOH HOH 463 A HOH 64 5 HOH HOH 464 A HOH 65 5 HOH HOH 465 A HOH 66 5 HOH HOH 466 A HOH 67 5 HOH HOH 467 A HOH 68 5 HOH HOH 468 A HOH 69 5 HOH HOH 469 A HOH 70 5 HOH HOH 470 A HOH 71 5 HOH HOH 471 A HOH 72 5 HOH HOH 472 A HOH 73 5 HOH HOH 473 A HOH 74 5 HOH HOH 474 A HOH 75 5 HOH HOH 475 A HOH 76 5 HOH HOH 476 A HOH 77 5 HOH HOH 477 A HOH 78 5 HOH HOH 478 A HOH 79 5 HOH HOH 479 A HOH 80 5 HOH HOH 480 A HOH 81 5 HOH HOH 481 A HOH 83 5 HOH HOH 482 A HOH 84 5 HOH HOH 483 A HOH 85 5 HOH HOH 484 A HOH 86 5 HOH HOH 485 A HOH 87 5 HOH HOH 486 A HOH 88 5 HOH HOH 487 A HOH 89 5 HOH HOH 488 A HOH 90 5 HOH HOH 489 A HOH 91 5 HOH HOH 490 A HOH 92 5 HOH HOH 491 A HOH 93 5 HOH HOH 492 A HOH 94 5 HOH HOH 493 A HOH 95 5 HOH HOH 494 A HOH 96 5 HOH HOH 495 A HOH 97 5 HOH HOH 496 A HOH 98 5 HOH HOH 497 A HOH 99 5 HOH HOH 498 A HOH 100 5 HOH HOH 499 A HOH 101 5 HOH HOH 500 A HOH 102 5 HOH HOH 501 A HOH 103 5 HOH HOH 502 A HOH 104 5 HOH HOH 503 A HOH 105 5 HOH HOH 504 A HOH 106 5 HOH HOH 505 A HOH 107 5 HOH HOH 506 A HOH 108 5 HOH HOH 507 A HOH 109 5 HOH HOH 508 A HOH 110 5 HOH HOH 509 A HOH 111 5 HOH HOH 510 A HOH 112 5 HOH HOH 511 A HOH 113 5 HOH HOH 512 A HOH 114 5 HOH HOH 513 A HOH 115 5 HOH HOH 514 A HOH 116 5 HOH HOH 515 A HOH 117 5 HOH HOH 516 A HOH 118 5 HOH HOH 517 A HOH 119 5 HOH HOH 518 A HOH 120 5 HOH HOH 519 A HOH 121 5 HOH HOH 520 A HOH 122 5 HOH HOH 521 A HOH 123 5 HOH HOH 522 A HOH 124 5 HOH HOH 523 A HOH 126 5 HOH HOH 524 A HOH 127 5 HOH HOH 525 A HOH 128 5 HOH HOH 526 A HOH 129 5 HOH HOH 527 A HOH 130 5 HOH HOH 528 A HOH 131 5 HOH HOH 529 A HOH 132 5 HOH HOH 530 A HOH 133 5 HOH HOH 531 A HOH 134 5 HOH HOH 532 A HOH 135 5 HOH HOH 533 A HOH 136 5 HOH HOH 534 A HOH 137 5 HOH HOH 535 A HOH 138 5 HOH HOH 536 A HOH 139 5 HOH HOH 537 A HOH 141 5 HOH HOH 538 A HOH 142 5 HOH HOH 539 A HOH 143 5 HOH HOH 540 A HOH 144 5 HOH HOH 541 A HOH 145 5 HOH HOH 542 A HOH 146 5 HOH HOH 543 A HOH 147 5 HOH HOH 544 A HOH 148 5 HOH HOH 545 A HOH 149 5 HOH HOH 546 A HOH 150 5 HOH HOH 547 A HOH 151 5 HOH HOH 548 A HOH 152 5 HOH HOH 549 A HOH 153 5 HOH HOH 550 A HOH 154 5 HOH HOH 551 A HOH 155 5 HOH HOH 552 A HOH 156 5 HOH HOH 553 A HOH 157 5 HOH HOH 554 A HOH 158 5 HOH HOH 555 A HOH 159 5 HOH HOH 556 A HOH 160 5 HOH HOH 557 A HOH 161 5 HOH HOH 558 A HOH 162 5 HOH HOH 559 A HOH 163 5 HOH HOH 560 A HOH 164 5 HOH HOH 561 A HOH 165 5 HOH HOH 562 A HOH 166 5 HOH HOH 563 A HOH 167 5 HOH HOH 564 A HOH 168 5 HOH HOH 565 A HOH 169 5 HOH HOH 566 A HOH 170 5 HOH HOH 567 A HOH 171 5 HOH HOH 568 A HOH 172 5 HOH HOH 569 A HOH 173 5 HOH HOH 570 A HOH 174 5 HOH HOH 571 A HOH 175 5 HOH HOH 572 A HOH 176 5 HOH HOH 573 A HOH 177 5 HOH HOH 574 A HOH 178 5 HOH HOH 575 A HOH 179 5 HOH HOH 576 A HOH 180 5 HOH HOH 577 A HOH 181 5 HOH HOH 578 A HOH 182 5 HOH HOH 579 A HOH 183 5 HOH HOH 580 A HOH 184 5 HOH HOH 581 A HOH 185 5 HOH HOH 582 A HOH 186 5 HOH HOH 583 A HOH 187 5 HOH HOH 584 A HOH 188 5 HOH HOH 585 A HOH 189 5 HOH HOH 586 A HOH 191 5 HOH HOH 587 A HOH 192 5 HOH HOH 588 A HOH 193 5 HOH HOH 589 A HOH 194 5 HOH HOH 590 A HOH 195 5 HOH HOH 591 A HOH 196 5 HOH HOH 592 A HOH 197 5 HOH HOH 593 A HOH 198 5 HOH HOH 594 A HOH 199 5 HOH HOH 595 A HOH 200 5 HOH HOH 596 A HOH 201 5 HOH HOH 597 A HOH 202 5 HOH HOH 598 A HOH 203 5 HOH HOH 599 A MET 1 n 1 MET 1 A ARG 2 n 2 ARG 2 A ILE 3 n 3 ILE 3 A ILE 4 n 4 ILE 4 A LEU 5 n 5 LEU 5 A LEU 6 n 6 LEU 6 A GLY 7 n 7 GLY 7 A ALA 8 n 8 ALA 8 A PRO 9 n 9 PRO 9 A GLY 10 n 10 GLY 10 A ALA 11 n 11 ALA 11 A GLY 12 n 12 GLY 12 A LYS 13 n 13 LYS 13 A GLY 14 n 14 GLY 14 A THR 15 n 15 THR 15 A GLN 16 n 16 GLN 16 A ALA 17 n 17 ALA 17 A GLN 18 n 18 GLN 18 A PHE 19 n 19 PHE 19 A ILE 20 n 20 ILE 20 A MET 21 n 21 MET 21 A ALA 22 n 22 ALA 22 A LYS 23 n 23 LYS 23 A PHE 24 n 24 PHE 24 A GLY 25 n 25 GLY 25 A ILE 26 n 26 ILE 26 A PRO 27 n 27 PRO 27 A GLN 28 n 28 GLN 28 A ILE 29 n 29 ILE 29 A SER 30 n 30 SER 30 A THR 31 n 31 THR 31 A GLY 32 n 32 GLY 32 A ASP 33 n 33 ASP 33 A MET 34 n 34 MET 34 A LEU 35 n 35 LEU 35 A ARG 36 n 36 ARG 36 A ALA 37 n 37 ALA 37 A ALA 38 n 38 ALA 38 A ILE 39 n 39 ILE 39 A LYS 40 n 40 LYS 40 A ALA 41 n 41 ALA 41 A GLY 42 n 42 GLY 42 A THR 43 n 43 THR 43 A GLU 44 n 44 GLU 44 A LEU 45 n 45 LEU 45 A GLY 46 n 46 GLY 46 A LYS 47 n 47 LYS 47 A GLN 48 n 48 GLN 48 A ALA 49 n 49 ALA 49 A LYS 50 n 50 LYS 50 A SER 51 n 51 SER 51 A VAL 52 n 52 VAL 52 A ILE 53 n 53 ILE 53 A ASP 54 n 54 ASP 54 A ALA 55 n 55 ALA 55 A GLY 56 n 56 GLY 56 A GLN 57 n 57 GLN 57 A LEU 58 n 58 LEU 58 A VAL 59 n 59 VAL 59 A SER 60 n 60 SER 60 A ASP 61 n 61 ASP 61 A ASP 62 n 62 ASP 62 A ILE 63 n 63 ILE 63 A ILE 64 n 64 ILE 64 A LEU 65 n 65 LEU 65 A GLY 66 n 66 GLY 66 A LEU 67 n 67 LEU 67 A VAL 68 n 68 VAL 68 A LYS 69 n 69 LYS 69 A GLU 70 n 70 GLU 70 A ARG 71 n 71 ARG 71 A ILE 72 n 72 ILE 72 A ALA 73 n 73 ALA 73 A GLN 74 n 74 GLN 74 A ASP 75 n 75 ASP 75 A ASP 76 n 76 ASP 76 A CYS 77 n 77 CYS 77 A ALA 78 n 78 ALA 78 A LYS 79 n 79 LYS 79 A GLY 80 n 80 GLY 80 A PHE 81 n 81 PHE 81 A LEU 82 n 82 LEU 82 A LEU 83 n 83 LEU 83 A ASP 84 n 84 ASP 84 A GLY 85 n 85 GLY 85 A PHE 86 n 86 PHE 86 A PRO 87 n 87 PRO 87 A ARG 88 n 88 ARG 88 A THR 89 n 89 THR 89 A ILE 90 n 90 ILE 90 A PRO 91 n 91 PRO 91 A GLN 92 n 92 GLN 92 A ALA 93 n 93 ALA 93 A ASP 94 n 94 ASP 94 A GLY 95 n 95 GLY 95 A LEU 96 n 96 LEU 96 A LYS 97 n 97 LYS 97 A GLU 98 n 98 GLU 98 A VAL 99 n 99 VAL 99 A GLY 100 n 100 GLY 100 A VAL 101 n 101 VAL 101 A VAL 102 n 102 VAL 102 A VAL 103 n 103 VAL 103 A ASP 104 n 104 ASP 104 A TYR 105 n 105 TYR 105 A VAL 106 n 106 VAL 106 A ILE 107 n 107 ILE 107 A GLU 108 n 108 GLU 108 A PHE 109 n 109 PHE 109 A ASP 110 n 110 ASP 110 A VAL 111 n 111 VAL 111 A ALA 112 n 112 ALA 112 A ASP 113 n 113 ASP 113 A SER 114 n 114 SER 114 A VAL 115 n 115 VAL 115 A ILE 116 n 116 ILE 116 A VAL 117 n 117 VAL 117 A GLU 118 n 118 GLU 118 A ARG 119 n 119 ARG 119 A MET 120 n 120 MET 120 A ALA 121 n 121 ALA 121 A GLY 122 n 122 GLY 122 A ARG 123 n 123 ARG 123 A ARG 124 n 124 ARG 124 A ALA 125 n 125 ALA 125 A HIS 126 n 126 HIS 126 A LEU 127 n 127 LEU 127 A ALA 128 n 128 ALA 128 A SER 129 n 129 SER 129 A GLY 130 n 130 GLY 130 A ARG 131 n 131 ARG 131 A THR 132 n 132 THR 132 A TYR 133 n 133 TYR 133 A HIS 134 n 134 HIS 134 A ASN 135 n 135 ASN 135 A VAL 136 n 136 VAL 136 A TYR 137 n 137 TYR 137 A ASN 138 n 138 ASN 138 A PRO 139 n 139 PRO 139 A PRO 140 n 140 PRO 140 A LYS 141 n 141 LYS 141 A VAL 142 n 142 VAL 142 A GLU 143 n 143 GLU 143 A GLY 144 n 144 GLY 144 A LYS 145 n 145 LYS 145 A ASP 146 n 146 ASP 146 A ASP 147 n 147 ASP 147 A VAL 148 n 148 VAL 148 A THR 149 n 149 THR 149 A GLY 150 n 150 GLY 150 A GLU 151 n 151 GLU 151 A ASP 152 n 152 ASP 152 A LEU 153 n 153 LEU 153 A VAL 154 n 154 VAL 154 A ILE 155 n 155 ILE 155 A ARG 156 n 156 ARG 156 A GLU 157 n 157 GLU 157 A ASP 158 n 158 ASP 158 A ASP 159 n 159 ASP 159 A LYS 160 n 160 LYS 160 A GLU 161 n 161 GLU 161 A GLU 162 n 162 GLU 162 A THR 163 n 163 THR 163 A VAL 164 n 164 VAL 164 A LEU 165 n 165 LEU 165 A ALA 166 n 166 ALA 166 A ARG 167 n 167 ARG 167 A LEU 168 n 168 LEU 168 A GLY 169 n 169 GLY 169 A VAL 170 n 170 VAL 170 A TYR 171 n 171 TYR 171 A HIS 172 n 172 HIS 172 A ASN 173 n 173 ASN 173 A GLN 174 n 174 GLN 174 A THR 175 n 175 THR 175 A ALA 176 n 176 ALA 176 A PRO 177 n 177 PRO 177 A LEU 178 n 178 LEU 178 A ILE 179 n 179 ILE 179 A ALA 180 n 180 ALA 180 A TYR 181 n 181 TYR 181 A TYR 182 n 182 TYR 182 A GLY 183 n 183 GLY 183 A LYS 184 n 184 LYS 184 A GLU 185 n 185 GLU 185 A ALA 186 n 186 ALA 186 A GLU 187 n 187 GLU 187 A ALA 188 n 188 ALA 188 A GLY 189 n 189 GLY 189 A ASN 190 n 190 ASN 190 A THR 191 n 191 THR 191 A GLN 192 n 192 GLN 192 A TYR 193 n 193 TYR 193 A LEU 194 n 194 LEU 194 A LYS 195 n 195 LYS 195 A PHE 196 n 196 PHE 196 A ASP 197 n 197 ASP 197 A GLY 198 n 198 GLY 198 A THR 199 n 199 THR 199 A LYS 200 n 200 LYS 200 A ALA 201 n 201 ALA 201 A VAL 202 n 202 VAL 202 A ALA 203 n 203 ALA 203 A GLU 204 n 204 GLU 204 A VAL 205 n 205 VAL 205 A SER 206 n 206 SER 206 A ALA 207 n 207 ALA 207 A GLU 208 n 208 GLU 208 A LEU 209 n 209 LEU 209 A GLU 210 n 210 GLU 210 A LYS 211 n 211 LYS 211 A ALA 212 n 212 ALA 212 A LEU 213 n 213 LEU 213 A ALA 214 n 214 ALA 214 A author_and_software_defined_assembly PISA 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N ILE 29 A N ILE 29 A O LEU 82 A O LEU 82 A O LEU 83 A O LEU 83 A N ILE 3 A N ILE 3 A N ILE 4 A N ILE 4 A O ILE 107 A O ILE 107 A N GLU 108 A N GLU 108 A O LEU 194 A O LEU 194 A N ARG 124 A N ARG 124 A O TYR 133 A O TYR 133 1 A A O O HOH HOH 568 582 2.08 1 A A O O HOH HOH 585 586 1.93 1_555 2_454 1 A ASN 138 -166.89 65.80 74.640 19.7206 4.910 -0.4410 -0.0000 0.0000 -3.6268 -0.0000 4.0678 0.2229 0.1673 0.1700 2.0100 50.16 753 14833 5.0800 99.6900 1.000 0.220 0.8739 0.3500 1 1.340 MOLECULAR REPLACEMENT 18.7200 0.6000 0.9000 ML FLAT BULK SOLVENT MODEL 39.5150 0.4000 2.0100 50.16 199 1871 55 0 1617 0.008 1746 1.208 2375 0.074 269 0.004 304 17.640 654 0.2392 0.1684 2.1652 166 2730 2896 5 100.0000 0.2164 0.1643 2.3831 134 2773 2907 5 99.0000 0.2410 0.1763 2.7279 170 2759 2929 5 100.0000 0.2454 0.1771 3.4368 155 2819 2974 5 100.0000 0.1871 0.1578 50.1805 128 2999 3127 5 100.0000 2.01 50.16 4K46 14921 14921 2 2 0.074 1 15.2 100 2.01 2.12 0.078 1 100 data reduction Andrew G.W. Leslie andrew@mrc-lmb.cam.ac.uk http://www.mrc-lmb.cam.ac.uk/harry/mosflm/ MOSFLM package data scaling Phil R. Evans pre@mrc-lmb.cam.ac.uk Fortran_77 http://www.ccp4.ac.uk/dist/html/scala.html SCALA other phasing Randy J. Read cimr-phaser@lists.cam.ac.uk http://www-structmed.cimr.cam.ac.uk/phaser/ PHASER program refinement Paul D. Adams PDAdams@lbl.gov C++ http://www.phenix-online.org/ PHENIX package 1.7.2_865 data extraction PDB deposit@deposit.rcsb.org April 22, 2011 C++ http://sw-tools.pdb.org/apps/PDB_EXTRACT/ PDB_EXTRACT package 3.11 Crystal Structure of Adenylate Kinase from Photobacterium profundum 1 N N 2 N N 3 N N 4 N N 5 N N A GLY 12 A GLY 12 HELX_P A GLY 25 A GLY 25 1 1 14 A THR 31 A THR 31 HELX_P A GLY 42 A GLY 42 1 2 12 A THR 43 A THR 43 HELX_P A GLY 56 A GLY 56 1 3 14 A SER 60 A SER 60 HELX_P A ALA 73 A ALA 73 1 4 14 A GLN 74 A GLN 74 HELX_P A ALA 78 A ALA 78 5 5 5 A THR 89 A THR 89 HELX_P A VAL 99 A VAL 99 1 6 11 A ALA 112 A ALA 112 HELX_P A ALA 121 A ALA 121 1 7 10 A ARG 156 A ARG 156 HELX_P A ASP 159 A ASP 159 5 8 4 A LYS 160 A LYS 160 HELX_P A THR 175 A THR 175 1 9 16 A ALA 176 A ALA 176 HELX_P A ALA 188 A ALA 188 1 10 13 A ALA 201 A ALA 201 HELX_P A LEU 213 A LEU 213 1 11 13 TRANSFERASE transferase, phosphoryl transfer reaction, conformational changes, pressure-dependent activity increase, phosphoryl gransfer reaction, conformational changes of lids domains, ATP binding, AMP binding, ADP binding, phosphoryl transfer A PHE 86 A PHE 86 1 A PRO 87 A PRO 87 -3.12 KAD_PHOPR UNP 1 1 Q6LTE1 MRIILLGAPGAGKGTQAQFIMAKFGIPQISTGDMLRAAIKAGTELGKQAKSVIDAGQLVSDDIILGLVKERIAQDDCAKG FLLDGFPRTIPQADGLKEVGVVVDYVIEFDVADSVIVERMAGRRAHLASGRTYHNVYNPPKVEGKDDVTGEDLVIREDDK EETVLARLGVYHNQTAPLIAYYGKEAEAGNTQYLKFDGTKAVAEVSAELEKALA 1 214 4K46 1 214 Q6LTE1 A 1 1 214 5 2 parallel parallel parallel parallel anti-parallel A GLN 28 A GLN 28 A SER 30 A SER 30 A PHE 81 A PHE 81 A ASP 84 A ASP 84 A ARG 2 A ARG 2 A LEU 6 A LEU 6 A TYR 105 A TYR 105 A ASP 110 A ASP 110 A GLN 192 A GLN 192 A ASP 197 A ASP 197 A ARG 123 A ARG 123 A HIS 126 A HIS 126 A ARG 131 A ARG 131 A HIS 134 A HIS 134 BINDING SITE FOR RESIDUE ADP A 301 A ADP 301 Software 22 BINDING SITE FOR RESIDUE AMP A 302 A AMP 302 Software 20 BINDING SITE FOR RESIDUE PO4 A 303 A PO4 303 Software 2 A GLY 10 A GLY 10 22 1_555 A ALA 11 A ALA 11 22 1_555 A GLY 12 A GLY 12 22 1_555 A LYS 13 A LYS 13 22 1_555 A GLY 14 A GLY 14 22 1_555 A THR 15 A THR 15 22 1_555 A ARG 119 A ARG 119 22 1_555 A MET 120 A MET 120 22 1_555 A ARG 123 A ARG 123 22 1_555 A THR 132 A THR 132 22 1_555 A TYR 133 A TYR 133 22 1_555 A HIS 134 A HIS 134 22 1_555 A TYR 137 A TYR 137 22 1_555 A GLY 198 A GLY 198 22 1_555 A LYS 200 A LYS 200 22 1_555 A VAL 202 A VAL 202 22 1_555 A HOH 402 E HOH 22 1_555 A HOH 406 E HOH 22 1_555 A HOH 418 E HOH 22 1_555 A HOH 427 E HOH 22 1_555 A HOH 431 E HOH 22 1_555 A HOH 446 E HOH 22 1_555 A THR 31 A THR 31 20 1_555 A GLY 32 A GLY 32 20 1_555 A LEU 35 A LEU 35 20 1_555 A ARG 36 A ARG 36 20 1_555 A ILE 53 A ILE 53 20 1_555 A GLN 57 A GLN 57 20 1_555 A VAL 59 A VAL 59 20 1_555 A ILE 64 A ILE 64 20 1_555 A GLY 85 A GLY 85 20 1_555 A ARG 88 A ARG 88 20 1_555 A GLN 92 A GLN 92 20 1_555 A ARG 156 A ARG 156 20 1_555 A ARG 167 A ARG 167 20 1_555 A HOH 409 E HOH 20 1_555 A HOH 410 E HOH 20 1_555 A HOH 431 E HOH 20 1_555 A HOH 433 E HOH 20 1_555 A HOH 457 E HOH 20 1_555 A HOH 558 E HOH 20 1_555 A HOH 597 E HOH 20 1_555 A MET 1 A MET 1 2 1_555 A HOH 561 E HOH 2 1_455 19 P 21 21 21