0.021038 0.000000 0.000000 0.000000 0.021038 0.000000 0.000000 0.000000 0.015936 0.000000 0.000000 0.000000 Caro, J.A. Flores, E. Schlessman, J.L. Heroux, A. Garcia-Moreno E., B. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.000 90.000 90.000 47.532 47.532 62.751 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking Ca 2 40.078 CALCIUM ION non-polymer C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C6 H14 O2 118.174 (4S)-2-METHYL-2,4-PENTANEDIOL non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking O4 P -3 94.971 PHOSPHATE ION non-polymer C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C10 H16 N2 O11 P2 402.188 THYMIDINE-3',5'-DIPHOSPHATE DNA linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N CA N 75 N N N 76 S C N 77 N C N 78 N O N 79 N C N 80 N C N 81 N C N 82 N O N 83 N N N 84 N O N 85 N H N 86 N H N 87 N H N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N H N 95 N N N 96 S C N 97 N C N 98 N O N 99 N C N 100 N C N 101 N C N 102 N O N 103 N O N 104 N O N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N H N 114 N N N 115 N C N 116 N C N 117 N O N 118 N O N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N N N 125 S C N 126 N C N 127 N O N 128 N C Y 129 N C Y 130 N N Y 131 N C Y 132 N C Y 133 N N N 134 N O N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N H N 145 N O N 146 N H N 147 N H N 148 N N N 149 S C N 150 N C N 151 N O N 152 S C N 153 N C N 154 N C N 155 N C N 156 N O N 157 N H N 158 N H N 159 N H N 160 N H N 161 N H N 162 N H N 163 N H N 164 N H N 165 N H N 166 N H N 167 N H N 168 N H N 169 N H N 170 N N N 171 S C N 172 N C N 173 N O N 174 N C N 175 N C N 176 N C N 177 N C N 178 N O N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N N N 193 S C N 194 N C N 195 N O N 196 N C N 197 N C N 198 N C N 199 N C N 200 N N N 201 N O N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N N N 218 S C N 219 N C N 220 N O N 221 N C N 222 N C N 223 N S N 224 N C N 225 N O N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N H N 237 N C N 238 N C N 239 N O N 240 N C N 241 N C N 242 S C N 243 N O N 244 N C N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N N N 260 S C N 261 N C N 262 N O N 263 N C Y 264 N C Y 265 N C Y 266 N C Y 267 N C Y 268 N C Y 269 N C N 270 N O N 271 N H N 272 N H N 273 N H N 274 N H N 275 N H N 276 N H N 277 N H N 278 N H N 279 N H N 280 N H N 281 N H N 282 N P N 283 N O N 284 N O N 285 N O N 286 N O N 287 N N N 288 S C N 289 N C N 290 N O N 291 N C N 292 N C N 293 N C N 294 N O N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N N N 305 S C N 306 N C N 307 N O N 308 N C N 309 N O N 310 N O N 311 N H N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N P N 319 N O N 320 N O N 321 N O N 322 N P N 323 N O N 324 N O N 325 N O N 326 N O N 327 N C N 328 R C N 329 N O N 330 S C N 331 N O N 332 N C N 333 R C N 334 N N N 335 N C N 336 N O N 337 N N N 338 N C N 339 N O N 340 N C N 341 N C N 342 N C N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 352 N H N 353 N H N 354 N H N 355 N H N 356 N H N 357 N H N 358 N H N 359 N N N 360 S C N 361 N C N 362 N O N 363 R C N 364 N O N 365 N C N 366 N O N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N H N 374 N H N 375 N H N 376 N N N 377 S C N 378 N C N 379 N O N 380 N C Y 381 N C Y 382 N C Y 383 N C Y 384 N N Y 385 N C Y 386 N C Y 387 N C Y 388 N C Y 389 N C N 390 N O N 391 N H N 392 N H N 393 N H N 394 N H N 395 N H N 396 N H N 397 N H N 398 N H N 399 N H N 400 N H N 401 N H N 402 N H N 403 N N N 404 S C N 405 N C N 406 N O N 407 N C Y 408 N C Y 409 N C Y 410 N C Y 411 N C Y 412 N C Y 413 N C N 414 N O N 415 N O N 416 N H N 417 N H N 418 N H N 419 N H N 420 N H N 421 N H N 422 N H N 423 N H N 424 N H N 425 N H N 426 N H N 427 N N N 428 S C N 429 N C N 430 N O N 431 N C N 432 N C N 433 N C N 434 N O N 435 N H N 436 N H N 437 N H N 438 N H N 439 N H N 440 N H N 441 N H N 442 N H N 443 N H N 444 N H N 445 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N doub N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N doub N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N doub N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N doub N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N doub N 123 N sing N 124 N sing N 125 N sing N 126 N sing Y 127 N sing Y 128 N doub Y 129 N doub N 130 N sing Y 131 N sing N 132 N sing Y 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N doub N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N doub N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N doub N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N doub N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N doub N 252 N sing N 253 N sing N 254 N sing N 255 N sing Y 256 N doub Y 257 N sing Y 258 N sing N 259 N sing Y 260 N doub N 261 N sing Y 262 N doub N 263 N sing Y 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N doub N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N doub N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N doub N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N doub N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N doub N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N doub N 333 N sing N 334 N sing N 335 N sing N 336 N doub N 337 N sing N 338 N sing N 339 N doub N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N doub N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N doub N 367 N sing N 368 N sing N 369 N sing N 370 N sing Y 371 N doub Y 372 N sing Y 373 N sing N 374 N sing Y 375 N doub Y 376 N sing Y 377 N sing N 378 N sing Y 379 N sing Y 380 N doub N 381 N sing Y 382 N doub N 383 N sing Y 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N doub N 395 N sing N 396 N sing N 397 N sing N 398 N sing Y 399 N doub Y 400 N sing Y 401 N sing N 402 N sing Y 403 N doub N 404 N sing Y 405 N doub N 406 N sing Y 407 N sing N 408 N sing N 409 N sing N 410 N sing N 411 N sing N 412 N sing N 413 N sing N 414 N sing N 415 N sing N 416 N sing N 417 N sing N 418 N doub N 419 N sing N 420 N sing N 421 N sing N 422 N sing N 423 N sing N 424 N sing N 425 N sing N 426 N sing N 427 N sing N 428 N sing N 429 N sing To be Published 0353 Pressure effects on proteins 10.2210/pdb4k6d/pdb pdb_00004k6d 100 1 Meridionally-bent fused silica mirror with palladium and uncoated stripes vertically-focusing at 6.6:1 demagnification PIXEL 2013-04-01 DECTRIS PILATUS 6M Double crystal Si(111) with cryogenically-cooled first crystal and sagittally-bent second crystal horizontally-focusing at 3.3:1 demagnification SINGLE WAVELENGTH M x-ray 1 1.1000 1.0 X25 NSLS 1.1000 SYNCHROTRON NSLS BEAMLINE X25 16921.465 Thermonuclease 3.1.31.1 Nuclease A (UNP residues 83-231) V23M,T62F 1 man polymer 402.188 THYMIDINE-3',5'-DIPHOSPHATE 1 syn non-polymer 40.078 CALCIUM ION 1 syn non-polymer 118.174 (4S)-2-METHYL-2,4-PENTANEDIOL 2 syn non-polymer 94.971 PHOSPHATE ION 1 syn non-polymer 18.015 water 80 nat water TNase, Micrococcal nuclease, Staphylococcal nuclease no no ATSTKKLHKEPATLIKAIDGDTMKLMYKGQPMTFRLLLVDTPETKHPKKGVEKYGPEASAFFKKMVENAKKIEVEFDKGQ RTDKYGRGLAYIYADGKMVNEALVRQGLAKVAYVYKPNNTHEQHLRKSEAQAKKEKLNIWSEDNADSGQ ATSTKKLHKEPATLIKAIDGDTMKLMYKGQPMTFRLLLVDTPETKHPKKGVEKYGPEASAFFKKMVENAKKIEVEFDKGQ RTDKYGRGLAYIYADGKMVNEALVRQGLAKVAYVYKPNNTHEQHLRKSEAQAKKEKLNIWSEDNADSGQ A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n sample nuc 1280 Staphylococcus aureus 469008 Escherichia coli BL21(DE3) plasmid pET24a+ 1 2.09 41.28 VAPOR DIFFUSION, HANGING DROP 6.0 34% MPD, 25 mM potassium phosphate, calcium chloride, pdTp, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 277K 277 chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model pdbx_struct_conn_angle struct_conn struct_ref_seq_dif struct_site repository Initial release Data collection Database references Derived calculations Refinement description 1 0 2013-04-24 1 1 2023-09-20 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id The crystal structure of the ternary complex of staphylococcal nuclease, Ca2+, and the inhibitor pdTp, refined at 1.65 Angstroms Crystal structure of staphylococcal nuclease variant V23M/L25F/T62F at cryogenic temperature Crystal structure of staphylococcal nuclease variant V23M/L36F at cryogenic temperature RCSB Y RCSB 2013-04-15 REL REL THP THYMIDINE-3',5'-DIPHOSPHATE CA CALCIUM ION MPD (4S)-2-METHYL-2,4-PENTANEDIOL PO4 PHOSPHATE ION HOH water 1SNC PDB ENTRY 1SNC PDB experimental model THP 1 2 THP THP 201 A CA 1 3 CA CA 202 A MPD 1 4 MPD MPD 203 A PO4 1 5 PO4 PO4 204 A MPD 1 4 MPD MPD 205 A HOH 1 6 HOH HOH 301 A HOH 2 6 HOH HOH 302 A HOH 3 6 HOH HOH 303 A HOH 4 6 HOH HOH 304 A HOH 5 6 HOH HOH 305 A HOH 6 6 HOH HOH 306 A HOH 7 6 HOH HOH 307 A HOH 8 6 HOH HOH 308 A HOH 9 6 HOH HOH 309 A HOH 11 6 HOH HOH 310 A HOH 12 6 HOH HOH 311 A HOH 13 6 HOH HOH 312 A HOH 14 6 HOH HOH 313 A HOH 15 6 HOH HOH 314 A HOH 16 6 HOH HOH 315 A HOH 17 6 HOH HOH 316 A HOH 18 6 HOH HOH 317 A HOH 19 6 HOH HOH 318 A HOH 20 6 HOH HOH 319 A HOH 21 6 HOH HOH 320 A HOH 22 6 HOH HOH 321 A HOH 23 6 HOH HOH 322 A HOH 25 6 HOH HOH 323 A HOH 26 6 HOH HOH 324 A HOH 27 6 HOH HOH 325 A HOH 28 6 HOH HOH 326 A HOH 29 6 HOH HOH 327 A HOH 30 6 HOH HOH 328 A HOH 31 6 HOH HOH 329 A HOH 32 6 HOH HOH 330 A HOH 33 6 HOH HOH 331 A HOH 34 6 HOH HOH 332 A HOH 35 6 HOH HOH 333 A HOH 36 6 HOH HOH 334 A HOH 37 6 HOH HOH 335 A HOH 38 6 HOH HOH 336 A HOH 39 6 HOH HOH 337 A HOH 40 6 HOH HOH 338 A HOH 41 6 HOH HOH 339 A HOH 42 6 HOH HOH 340 A HOH 43 6 HOH HOH 341 A HOH 45 6 HOH HOH 342 A HOH 47 6 HOH HOH 343 A HOH 49 6 HOH HOH 344 A HOH 50 6 HOH HOH 345 A HOH 52 6 HOH HOH 346 A HOH 53 6 HOH HOH 347 A HOH 54 6 HOH HOH 348 A HOH 55 6 HOH HOH 349 A HOH 56 6 HOH HOH 350 A HOH 57 6 HOH HOH 351 A HOH 58 6 HOH HOH 352 A HOH 59 6 HOH HOH 353 A HOH 60 6 HOH HOH 354 A HOH 61 6 HOH HOH 355 A HOH 62 6 HOH HOH 356 A HOH 63 6 HOH HOH 357 A HOH 64 6 HOH HOH 358 A HOH 65 6 HOH HOH 359 A HOH 66 6 HOH HOH 360 A HOH 67 6 HOH HOH 361 A HOH 68 6 HOH HOH 362 A HOH 69 6 HOH HOH 363 A HOH 70 6 HOH HOH 364 A HOH 71 6 HOH HOH 365 A HOH 72 6 HOH HOH 366 A HOH 73 6 HOH HOH 367 A HOH 74 6 HOH HOH 368 A HOH 75 6 HOH HOH 369 A HOH 76 6 HOH HOH 370 A HOH 77 6 HOH HOH 371 A HOH 78 6 HOH HOH 372 A HOH 79 6 HOH HOH 373 A HOH 80 6 HOH HOH 374 A HOH 81 6 HOH HOH 375 A HOH 82 6 HOH HOH 376 A HOH 83 6 HOH HOH 377 A HOH 84 6 HOH HOH 378 A HOH 85 6 HOH HOH 379 A HOH 86 6 HOH HOH 380 A 2.500 37.890 Phaser MODE: MR_AUTO n 1 1 A n 2 2 A n 3 3 A n 4 4 A n 5 5 A LYS 6 n 6 LYS 6 A LEU 7 n 7 LEU 7 A HIS 8 n 8 HIS 8 A LYS 9 n 9 LYS 9 A GLU 10 n 10 GLU 10 A PRO 11 n 11 PRO 11 A ALA 12 n 12 ALA 12 A THR 13 n 13 THR 13 A LEU 14 n 14 LEU 14 A ILE 15 n 15 ILE 15 A LYS 16 n 16 LYS 16 A ALA 17 n 17 ALA 17 A ILE 18 n 18 ILE 18 A ASP 19 n 19 ASP 19 A GLY 20 n 20 GLY 20 A ASP 21 n 21 ASP 21 A THR 22 n 22 THR 22 A MET 23 n 23 MET 23 A LYS 24 n 24 LYS 24 A LEU 25 n 25 LEU 25 A MET 26 n 26 MET 26 A TYR 27 n 27 TYR 27 A LYS 28 n 28 LYS 28 A GLY 29 n 29 GLY 29 A GLN 30 n 30 GLN 30 A PRO 31 n 31 PRO 31 A MET 32 n 32 MET 32 A THR 33 n 33 THR 33 A PHE 34 n 34 PHE 34 A ARG 35 n 35 ARG 35 A LEU 36 n 36 LEU 36 A LEU 37 n 37 LEU 37 A LEU 38 n 38 LEU 38 A VAL 39 n 39 VAL 39 A ASP 40 n 40 ASP 40 A THR 41 n 41 THR 41 A PRO 42 n 42 PRO 42 A n 43 43 A n 44 44 A n 45 45 A n 46 46 A n 47 47 A n 48 48 A n 49 49 A n 50 50 A n 51 51 A n 52 52 A n 53 53 A TYR 54 n 54 TYR 54 A GLY 55 n 55 GLY 55 A PRO 56 n 56 PRO 56 A GLU 57 n 57 GLU 57 A ALA 58 n 58 ALA 58 A SER 59 n 59 SER 59 A ALA 60 n 60 ALA 60 A PHE 61 n 61 PHE 61 A PHE 62 n 62 PHE 62 A LYS 63 n 63 LYS 63 A LYS 64 n 64 LYS 64 A MET 65 n 65 MET 65 A VAL 66 n 66 VAL 66 A GLU 67 n 67 GLU 67 A ASN 68 n 68 ASN 68 A ALA 69 n 69 ALA 69 A LYS 70 n 70 LYS 70 A LYS 71 n 71 LYS 71 A ILE 72 n 72 ILE 72 A GLU 73 n 73 GLU 73 A VAL 74 n 74 VAL 74 A GLU 75 n 75 GLU 75 A PHE 76 n 76 PHE 76 A ASP 77 n 77 ASP 77 A LYS 78 n 78 LYS 78 A GLY 79 n 79 GLY 79 A GLN 80 n 80 GLN 80 A ARG 81 n 81 ARG 81 A THR 82 n 82 THR 82 A ASP 83 n 83 ASP 83 A LYS 84 n 84 LYS 84 A TYR 85 n 85 TYR 85 A GLY 86 n 86 GLY 86 A ARG 87 n 87 ARG 87 A GLY 88 n 88 GLY 88 A LEU 89 n 89 LEU 89 A ALA 90 n 90 ALA 90 A TYR 91 n 91 TYR 91 A ILE 92 n 92 ILE 92 A TYR 93 n 93 TYR 93 A ALA 94 n 94 ALA 94 A ASP 95 n 95 ASP 95 A GLY 96 n 96 GLY 96 A LYS 97 n 97 LYS 97 A MET 98 n 98 MET 98 A VAL 99 n 99 VAL 99 A ASN 100 n 100 ASN 100 A GLU 101 n 101 GLU 101 A ALA 102 n 102 ALA 102 A LEU 103 n 103 LEU 103 A VAL 104 n 104 VAL 104 A ARG 105 n 105 ARG 105 A GLN 106 n 106 GLN 106 A GLY 107 n 107 GLY 107 A LEU 108 n 108 LEU 108 A ALA 109 n 109 ALA 109 A LYS 110 n 110 LYS 110 A VAL 111 n 111 VAL 111 A ALA 112 n 112 ALA 112 A TYR 113 n 113 TYR 113 A VAL 114 n 114 VAL 114 A TYR 115 n 115 TYR 115 A LYS 116 n 116 LYS 116 A PRO 117 n 117 PRO 117 A ASN 118 n 118 ASN 118 A ASN 119 n 119 ASN 119 A THR 120 n 120 THR 120 A HIS 121 n 121 HIS 121 A GLU 122 n 122 GLU 122 A GLN 123 n 123 GLN 123 A HIS 124 n 124 HIS 124 A LEU 125 n 125 LEU 125 A ARG 126 n 126 ARG 126 A LYS 127 n 127 LYS 127 A SER 128 n 128 SER 128 A GLU 129 n 129 GLU 129 A ALA 130 n 130 ALA 130 A GLN 131 n 131 GLN 131 A ALA 132 n 132 ALA 132 A LYS 133 n 133 LYS 133 A LYS 134 n 134 LYS 134 A GLU 135 n 135 GLU 135 A LYS 136 n 136 LYS 136 A LEU 137 n 137 LEU 137 A ASN 138 n 138 ASN 138 A ILE 139 n 139 ILE 139 A TRP 140 n 140 TRP 140 A SER 141 n 141 SER 141 A n 142 142 A n 143 143 A n 144 144 A n 145 145 A n 146 146 A n 147 147 A n 148 148 A n 149 149 A author_and_software_defined_assembly PISA 1 monomeric A ASP 21 A OD1 ASP 21 1_555 A CA 202 C CA CA 1_555 A ASP 40 A OD1 ASP 40 1_555 94.2 A ASP 21 A OD1 ASP 21 1_555 A CA 202 C CA CA 1_555 A THR 41 A O THR 41 1_555 91.2 A ASP 40 A OD1 ASP 40 1_555 A CA 202 C CA CA 1_555 A THR 41 A O THR 41 1_555 78.4 A ASP 21 A OD1 ASP 21 1_555 A CA 202 C CA CA 1_555 A THP 201 B O4P THP 1_555 102.3 A ASP 40 A OD1 ASP 40 1_555 A CA 202 C CA CA 1_555 A THP 201 B O4P THP 1_555 80.0 A THR 41 A O THR 41 1_555 A CA 202 C CA CA 1_555 A THP 201 B O4P THP 1_555 155.3 A ASP 21 A OD1 ASP 21 1_555 A CA 202 C CA CA 1_555 A HOH 366 G O HOH 1_555 77.9 A ASP 40 A OD1 ASP 40 1_555 A CA 202 C CA CA 1_555 A HOH 366 G O HOH 1_555 139.0 A THR 41 A O THR 41 1_555 A CA 202 C CA CA 1_555 A HOH 366 G O HOH 1_555 61.9 A THP 201 B O4P THP 1_555 A CA 202 C CA CA 1_555 A HOH 366 G O HOH 1_555 140.9 A ASP 21 A OD1 ASP 21 1_555 A CA 202 C CA CA 1_555 A HOH 367 G O HOH 1_555 82.7 A ASP 40 A OD1 ASP 40 1_555 A CA 202 C CA CA 1_555 A HOH 367 G O HOH 1_555 153.6 A THR 41 A O THR 41 1_555 A CA 202 C CA CA 1_555 A HOH 367 G O HOH 1_555 127.8 A THP 201 B O4P THP 1_555 A CA 202 C CA CA 1_555 A HOH 367 G O HOH 1_555 75.1 A HOH 366 G O HOH 1_555 A CA 202 C CA CA 1_555 A HOH 367 G O HOH 1_555 66.1 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O LYS 97 A O LYS 97 A N ALA 94 A N ALA 94 A O TYR 91 A O TYR 91 A N GLU 75 A N GLU 75 A O VAL 74 A O VAL 74 A N GLU 10 A N GLU 10 A N LYS 16 A N LYS 16 A O LYS 24 A O LYS 24 A N LEU 25 A N LEU 25 A O MET 32 A O MET 32 A N ARG 35 A N ARG 35 A O GLY 88 A O GLY 88 A N ASP 40 A N ASP 40 A O LYS 110 A O LYS 110 1 A ALA 1 A ALA 1 1 Y 1 A THR 2 A THR 2 1 Y 1 A SER 3 A SER 3 1 Y 1 A THR 4 A THR 4 1 Y 1 A LYS 5 A LYS 5 1 Y 1 A GLU 43 A GLU 43 1 Y 1 A THR 44 A THR 44 1 Y 1 A LYS 45 A LYS 45 1 Y 1 A HIS 46 A HIS 46 1 Y 1 A PRO 47 A PRO 47 1 Y 1 A LYS 48 A LYS 48 1 Y 1 A LYS 49 A LYS 49 1 Y 1 A GLY 50 A GLY 50 1 Y 1 A VAL 51 A VAL 51 1 Y 1 A GLU 52 A GLU 52 1 Y 1 A LYS 53 A LYS 53 1 Y 1 A GLU 142 A GLU 142 1 Y 1 A ASP 143 A ASP 143 1 Y 1 A ASN 144 A ASN 144 1 Y 1 A ALA 145 A ALA 145 1 Y 1 A ASP 146 A ASP 146 1 Y 1 A SER 147 A SER 147 1 Y 1 A GLY 148 A GLY 148 1 Y 1 A GLN 149 A GLN 149 1 Y 1 A ASP 19 -150.62 -150.89 1 A ASP 21 -141.64 14.15 1 A ASN 138 53.31 -105.48 69.400 24.8129 10.920 0.8400 0.0000 0.0000 0.8400 0.0000 -1.6900 0.9630 0.9510 HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT U VALUES : REFINED INDIVIDUALLY 0.2131 0.1902 0.1914 0.1914 1.650 47.53 851 16830 16830 5.1 99.95 0.2331 0.2089 1.000 0.300 0.8356 2.0710 0.0710 0.1033 0.0972 RANDOM 1 THROUGHOUT 0.0 0 MOLECULAR REPLACEMENT 0.1030 0.0970 0.8000 0.8000 1.2000 PDB ENTRY 1SNC MAXIMUM LIKELIHOOD MASK 1.650 47.53 80 1134 47 0 1007 0.019 0.020 1123 1.825 2.024 1521 6.368 5.000 137 31.775 24.348 46 14.833 15.000 225 8.666 15.000 5 0.117 0.200 164 0.011 0.021 797 0.2950 0.2510 1.693 73 1125 1198 1198 20 99.83 31.9 1.550 50.0 4K6D 20334 20334 0 0 0.065 2.235 1 14.9 12.5 100.0 0.307 1.550 1.580 8.7 1019 1.057 1 12.8 100.0 0.259 1.580 1.610 1025 1.138 1 12.6 100.0 0.242 1.610 1.640 1006 1.116 1 12.0 100.0 0.204 1.640 1.670 993 1.228 1 12.8 100.0 0.196 1.670 1.710 1015 1.243 1 12.8 100.0 0.167 1.710 1.750 1016 1.331 1 12.2 100.0 0.142 1.750 1.790 1021 1.506 1 12.8 100.0 0.127 1.790 1.840 998 1.584 1 13.1 100.0 0.117 1.840 1.890 1006 1.699 1 12.9 100.0 0.104 1.890 1.950 1009 2.005 1 12.1 100.0 0.092 1.950 2.020 1013 2.207 1 12.9 100.0 0.082 2.020 2.100 1020 2.370 1 12.5 100.0 0.078 2.100 2.200 1022 2.662 1 12.4 100.0 0.077 2.200 2.320 1020 2.863 1 12.9 100.0 0.072 2.320 2.460 1007 2.932 1 12.6 100.0 0.067 2.460 2.650 1021 3.178 1 12.2 100.0 0.064 2.650 2.920 1020 3.300 1 12.3 100.0 0.061 2.920 3.340 1015 3.680 1 12.5 100.0 0.056 3.340 4.210 1029 3.909 1 11.9 100.0 0.055 4.210 50.000 1059 3.869 1 11.7 99.9 data scaling Zbyszek Otwinowski hkl@hkl-xray.com http://www.hkl-xray.com/ SCALEPACK program phasing Randy J. Read cimr-phaser@lists.cam.ac.uk Mon Jun 27 09:33:44 2011 (svn ) http://www-structmed.cimr.cam.ac.uk/phaser/ PHASER program 2.3.0 refinement Garib N. Murshudov garib@ysbl.york.ac.uk Fortran_77 http://www.ccp4.ac.uk/dist/html/refmac5.html REFMAC program data extraction PDB deposit@deposit.rcsb.org April 22, 2011 C++ http://sw-tools.pdb.org/apps/PDB_EXTRACT/ PDB_EXTRACT package 3.11 data collection CBASS data reduction HKL-2000 Crystal structure of Staphylococcal nuclease variant V23M/T62F at cryogenic temperature 1 N N 2 N N 3 N N 4 N N 5 N N 4 N N 6 N N A GLY 55 A GLY 55 HELX_P A ALA 69 A ALA 69 1 1 15 A VAL 99 A VAL 99 HELX_P A GLN 106 A GLN 106 1 2 8 A HIS 121 A HIS 121 HELX_P A GLU 135 A GLU 135 1 3 15 A LEU 137 A LEU 137 HELX_P A SER 141 A SER 141 5 4 5 metalc 2.619 A ASP 21 A OD1 ASP 21 1_555 A CA 202 C CA CA 1_555 metalc 2.535 A ASP 40 A OD1 ASP 40 1_555 A CA 202 C CA CA 1_555 metalc 2.994 A THR 41 A O THR 41 1_555 A CA 202 C CA CA 1_555 metalc 2.967 A THP 201 B O4P THP 1_555 A CA 202 C CA CA 1_555 metalc 2.937 A CA 202 C CA CA 1_555 A HOH 366 G O HOH 1_555 metalc 2.749 A CA 202 C CA CA 1_555 A HOH 367 G O HOH 1_555 HYDROLASE Staphylococcal nuclease, hyperstable variant, pdtp, cavity, pressure, HYDROLASE A LYS 116 A LYS 116 1 A PRO 117 A PRO 117 4.63 NUC_STAAU UNP 1 83 P00644 ATSTKKLHKEPATLIKAIDGDTVKLMYKGQPMTFRLLLVDTPETKHPKKGVEKYGPEASAFTKKMVENAKKIEVEFDKGQ RTDKYGRGLAYIYADGKMVNEALVRQGLAKVAYVYKPNNTHEQHLRKSEAQAKKEKLNIWSEDNADSGQ 83 231 4K6D 1 149 P00644 A 1 1 149 1 VAL engineered mutation MET 23 4K6D A P00644 UNP 105 23 1 THR engineered mutation PHE 62 4K6D A P00644 UNP 144 62 7 2 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel A LYS 97 A LYS 97 A MET 98 A MET 98 A GLY 88 A GLY 88 A ALA 94 A ALA 94 A ILE 72 A ILE 72 A GLU 75 A GLU 75 A GLU 10 A GLU 10 A ALA 17 A ALA 17 A THR 22 A THR 22 A TYR 27 A TYR 27 A GLN 30 A GLN 30 A LEU 36 A LEU 36 A GLY 88 A GLY 88 A ALA 94 A ALA 94 A VAL 39 A VAL 39 A ASP 40 A ASP 40 A LYS 110 A LYS 110 A VAL 111 A VAL 111 BINDING SITE FOR RESIDUE THP A 201 A THP 201 Software 15 BINDING SITE FOR RESIDUE CA A 202 A CA 202 Software 6 BINDING SITE FOR RESIDUE MPD A 203 A MPD 203 Software 5 BINDING SITE FOR RESIDUE MPD A 205 A MPD 205 Software 3 A ARG 35 A ARG 35 15 1_555 A ASP 40 A ASP 40 15 1_555 A LYS 71 A LYS 71 15 3_555 A LYS 84 A LYS 84 15 1_555 A TYR 85 A TYR 85 15 1_555 A ARG 87 A ARG 87 15 1_555 A LEU 89 A LEU 89 15 1_555 A TYR 113 A TYR 113 15 1_555 A TYR 115 A TYR 115 15 1_555 A CA 202 C CA 15 1_555 A HOH 306 G HOH 15 1_555 A HOH 312 G HOH 15 1_555 A HOH 330 G HOH 15 1_555 A HOH 367 G HOH 15 1_555 A HOH 376 G HOH 15 1_555 A ASP 21 A ASP 21 6 1_555 A ASP 40 A ASP 40 6 1_555 A THR 41 A THR 41 6 1_555 A THP 201 B THP 6 1_555 A HOH 366 G HOH 6 1_555 A HOH 367 G HOH 6 1_555 A LEU 14 A LEU 14 5 1_555 A ILE 15 A ILE 15 5 1_555 A LYS 24 A LYS 24 5 4_554 A GLU 67 A GLU 67 5 1_555 A HOH 305 G HOH 5 1_555 A PHE 61 A PHE 61 3 1_555 A LYS 116 A LYS 116 3 2_544 A HOH 373 G HOH 3 1_555 76 P 41