0.014674
0.000000
0.000000
0.000000
0.014674
0.000000
0.000000
0.000000
0.009382
0.00000
0.00000
0.00000
Xia, G.
Smith, C.D.
Muccio, D.D.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
68.150
68.150
106.590
C24 H28 O2
348.478
4-[1-(3,5,5,8,8-pentamethyl-5,6,7,8-tetrahydronaphthalen-2-yl)ethenyl]benzoic acid
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
O
N
2
N
C
N
3
N
O
Y
4
N
C
Y
5
N
C
Y
6
N
C
Y
7
N
C
Y
8
N
C
Y
9
N
C
N
10
N
C
N
11
N
C
Y
12
N
C
Y
13
N
C
N
14
N
C
Y
15
N
C
Y
16
N
C
Y
17
N
C
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
C
N
22
N
C
N
23
N
C
Y
24
N
C
N
25
N
C
N
26
N
C
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
H
N
42
N
H
N
43
N
H
N
44
N
H
N
45
N
H
N
46
N
H
N
47
N
H
N
48
N
H
N
49
N
H
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
N
N
56
S
C
N
57
N
C
N
58
N
O
N
59
N
C
N
60
N
O
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
N
N
69
S
C
N
70
N
C
N
71
N
O
N
72
N
C
N
73
N
C
N
74
N
C
N
75
N
N
N
76
N
C
N
77
N
N
N
78
N
N
N
79
N
O
N
80
N
H
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
N
N
96
S
C
N
97
N
C
N
98
N
O
N
99
N
C
N
100
N
C
N
101
N
O
N
102
N
N
N
103
N
O
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
N
N
113
S
C
N
114
N
C
N
115
N
O
N
116
N
C
N
117
N
C
N
118
N
O
N
119
N
O
N
120
N
O
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
N
N
129
R
C
N
130
N
C
N
131
N
O
N
132
N
C
N
133
N
S
N
134
N
O
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
N
N
143
S
C
N
144
N
C
N
145
N
O
N
146
N
C
N
147
N
C
N
148
N
C
N
149
N
O
N
150
N
N
N
151
N
O
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
N
N
163
S
C
N
164
N
C
N
165
N
O
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
O
N
171
N
O
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
N
N
182
N
C
N
183
N
C
N
184
N
O
N
185
N
O
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
N
N
192
S
C
N
193
N
C
N
194
N
O
N
195
N
C
Y
196
N
C
Y
197
N
N
Y
198
N
C
Y
199
N
C
Y
200
N
N
N
201
N
O
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
O
N
213
N
H
N
214
N
H
N
215
N
N
N
216
S
C
N
217
N
C
N
218
N
O
N
219
S
C
N
220
N
C
N
221
N
C
N
222
N
C
N
223
N
O
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
N
N
238
S
C
N
239
N
C
N
240
N
O
N
241
N
C
N
242
N
C
N
243
N
C
N
244
N
C
N
245
N
O
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
N
N
260
S
C
N
261
N
C
N
262
N
O
N
263
N
C
N
264
N
C
N
265
N
C
N
266
N
C
N
267
N
N
N
268
N
O
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
N
N
285
S
C
N
286
N
C
N
287
N
O
N
288
N
C
N
289
N
C
N
290
N
S
N
291
N
C
N
292
N
O
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
N
N
305
S
C
N
306
N
C
N
307
N
O
N
308
N
C
Y
309
N
C
Y
310
N
C
Y
311
N
C
Y
312
N
C
Y
313
N
C
Y
314
N
C
N
315
N
O
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
N
N
328
S
C
N
329
N
C
N
330
N
O
N
331
N
C
N
332
N
C
N
333
N
C
N
334
N
O
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
N
N
345
S
C
N
346
N
C
N
347
N
O
N
348
N
C
N
349
N
O
N
350
N
O
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
N
N
359
S
C
N
360
N
C
N
361
N
O
N
362
R
C
N
363
N
O
N
364
N
C
N
365
N
O
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
N
N
376
S
C
N
377
N
C
N
378
N
O
N
379
N
C
Y
380
N
C
Y
381
N
C
Y
382
N
C
Y
383
N
N
Y
384
N
C
Y
385
N
C
Y
386
N
C
Y
387
N
C
Y
388
N
C
N
389
N
O
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
N
N
403
S
C
N
404
N
C
N
405
N
O
N
406
N
C
Y
407
N
C
Y
408
N
C
Y
409
N
C
Y
410
N
C
Y
411
N
C
Y
412
N
C
N
413
N
O
N
414
N
O
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
N
N
427
S
C
N
428
N
C
N
429
N
O
N
430
N
C
N
431
N
C
N
432
N
C
N
433
N
O
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
N
1
N
doub
N
2
N
sing
N
3
N
sing
N
4
N
sing
Y
5
N
doub
Y
6
N
sing
Y
7
N
doub
N
8
N
sing
Y
9
N
sing
N
10
N
sing
Y
11
N
doub
N
12
N
sing
N
13
N
sing
Y
14
N
sing
N
15
N
sing
N
16
N
doub
N
17
N
sing
N
18
N
sing
N
19
N
sing
Y
20
N
doub
Y
21
N
sing
Y
22
N
doub
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
Y
27
N
sing
N
28
N
sing
Y
29
N
sing
N
30
N
sing
N
31
N
sing
Y
32
N
doub
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
doub
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
doub
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
doub
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
doub
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
doub
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
doub
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
doub
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
doub
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
doub
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
doub
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
doub
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
doub
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
doub
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
Y
196
N
sing
Y
197
N
doub
Y
198
N
doub
N
199
N
sing
Y
200
N
sing
N
201
N
sing
Y
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
doub
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
doub
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
doub
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
doub
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
doub
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
Y
304
N
doub
Y
305
N
sing
Y
306
N
sing
N
307
N
sing
Y
308
N
doub
N
309
N
sing
Y
310
N
doub
N
311
N
sing
Y
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
doub
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
doub
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
doub
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
doub
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
Y
373
N
doub
Y
374
N
sing
Y
375
N
sing
N
376
N
sing
Y
377
N
doub
Y
378
N
sing
Y
379
N
sing
N
380
N
sing
Y
381
N
sing
Y
382
N
doub
N
383
N
sing
Y
384
N
doub
N
385
N
sing
Y
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
doub
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
Y
401
N
doub
Y
402
N
sing
Y
403
N
sing
N
404
N
sing
Y
405
N
doub
N
406
N
sing
Y
407
N
doub
N
408
N
sing
Y
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
doub
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
US
J.Biol.Chem.
JBCHA3
0071
0021-9258
289
814
826
10.1074/jbc.M113.476861
24187139
Defining the Communication between Agonist and Coactivator Binding in the Retinoid X Receptor alpha Ligand Binding Domain.
2014
10.2210/pdb4k6i/pdb
pdb_00004k6i
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
IMAGE PLATE
2006-09-01
RIGAKU RAXIS IV
Graphite
SINGLE WAVELENGTH
M
x-ray
1
1.315
1.0
1.315
ROTATING ANODE
RIGAKU R-AXIS IV
25897.021
Retinoic acid receptor RXR-alpha
ligand binding domain, UNP residues 228-458
1
man
polymer
1579.866
Nuclear receptor coactivator 2
coactivator peptide, UNP residues 686-698
1
syn
polymer
348.478
4-[1-(3,5,5,8,8-pentamethyl-5,6,7,8-tetrahydronaphthalen-2-yl)ethenyl]benzoic acid
1
syn
non-polymer
18.015
water
71
nat
water
Nuclear receptor subfamily 2 group B member 1, Retinoid X receptor alpha
NCoA-2, Class E basic helix-loop-helix protein 75, bHLHe75, Transcriptional intermediary factor 2, hTIF2
no
no
EDMPVERILEAELAVEPKTETYVEANMGLNPSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNE
LLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPA
EVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAP
EDMPVERILEAELAVEPKTETYVEANMGLNPSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNE
LLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPA
EVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAP
A
polypeptide(L)
no
no
KHKILHRLLQDSS
KHKILHRLLQDSS
B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
P19793
sample
NR2B1, RXRA, RXRA NR2B1
9606
Homo sapiens
562
Escherichia coli
BL21(DE3)
1
2.25
45.38
VAPOR DIFFUSION, HANGING DROP
7
5-15% PEG4000, 6-12% Glycerol, 0.1M Bis-Tris pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 295K
295
diffrn_source
database_2
pdbx_struct_assembly
pdbx_struct_assembly_gen
pdbx_struct_assembly_prop
pdbx_struct_oper_list
struct_site
chem_comp_atom
chem_comp_bond
pdbx_initial_refinement_model
repository
Initial release
Database references
Database references
Data collection
Database references
Derived calculations
Data collection
Refinement description
1
0
2013-11-13
1
1
2013-12-11
1
2
2014-01-29
1
3
2018-04-04
1
4
2022-08-17
1
5
2023-09-20
_diffrn_source.source
_diffrn_source.type
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_assembly.details
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly_gen.oper_expression
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
RCSB
2013-04-15
REL
REL
9RA
4-[1-(3,5,5,8,8-pentamethyl-5,6,7,8-tetrahydronaphthalen-2-yl)ethenyl]benzoic acid
HOH
water
GRIP-1 from AnaSpec Inc
9606
human
Homo sapiens
sample
3OAP
PDB ENTRY 3OAP
PDB
experimental model
TAR
500
3
9RA
9RA
500
A
WAT
1
4
HOH
HOH
601
A
WAT
2
4
HOH
HOH
602
A
WAT
3
4
HOH
HOH
603
A
WAT
4
4
HOH
HOH
604
A
WAT
5
4
HOH
HOH
605
A
WAT
6
4
HOH
HOH
606
A
WAT
7
4
HOH
HOH
607
A
WAT
8
4
HOH
HOH
608
A
WAT
9
4
HOH
HOH
609
A
WAT
10
4
HOH
HOH
610
A
WAT
11
4
HOH
HOH
611
A
WAT
12
4
HOH
HOH
612
A
WAT
13
4
HOH
HOH
613
A
WAT
14
4
HOH
HOH
614
A
WAT
15
4
HOH
HOH
615
A
WAT
16
4
HOH
HOH
616
A
WAT
17
4
HOH
HOH
617
A
WAT
18
4
HOH
HOH
618
A
WAT
19
4
HOH
HOH
619
A
WAT
20
4
HOH
HOH
620
A
WAT
21
4
HOH
HOH
621
A
WAT
22
4
HOH
HOH
622
A
WAT
23
4
HOH
HOH
623
A
WAT
24
4
HOH
HOH
624
A
WAT
25
4
HOH
HOH
625
A
WAT
26
4
HOH
HOH
626
A
WAT
27
4
HOH
HOH
627
A
WAT
28
4
HOH
HOH
628
A
WAT
29
4
HOH
HOH
629
A
WAT
30
4
HOH
HOH
630
A
WAT
31
4
HOH
HOH
631
A
WAT
32
4
HOH
HOH
632
A
WAT
33
4
HOH
HOH
633
A
WAT
34
4
HOH
HOH
634
A
WAT
35
4
HOH
HOH
635
A
WAT
36
4
HOH
HOH
636
A
WAT
37
4
HOH
HOH
637
A
WAT
38
4
HOH
HOH
638
A
WAT
39
4
HOH
HOH
639
A
WAT
40
4
HOH
HOH
640
A
WAT
41
4
HOH
HOH
641
A
WAT
42
4
HOH
HOH
642
A
WAT
43
4
HOH
HOH
643
A
WAT
44
4
HOH
HOH
644
A
WAT
45
4
HOH
HOH
645
A
WAT
46
4
HOH
HOH
646
A
WAT
47
4
HOH
HOH
647
A
WAT
48
4
HOH
HOH
648
A
WAT
49
4
HOH
HOH
649
A
WAT
50
4
HOH
HOH
650
A
WAT
51
4
HOH
HOH
651
A
WAT
52
4
HOH
HOH
652
A
WAT
53
4
HOH
HOH
653
A
WAT
54
4
HOH
HOH
654
A
WAT
55
4
HOH
HOH
655
A
WAT
56
4
HOH
HOH
656
A
WAT
57
4
HOH
HOH
657
A
WAT
58
4
HOH
HOH
658
A
WAT
59
4
HOH
HOH
659
A
WAT
60
4
HOH
HOH
660
A
WAT
61
4
HOH
HOH
661
A
WAT
62
4
HOH
HOH
662
A
WAT
63
4
HOH
HOH
663
A
WAT
64
4
HOH
HOH
664
A
WAT
65
4
HOH
HOH
665
A
WAT
66
4
HOH
HOH
666
A
WAT
67
4
HOH
HOH
667
A
WAT
68
4
HOH
HOH
668
A
WAT
69
4
HOH
HOH
669
A
TIP
70
4
HOH
HOH
670
A
TIP
71
4
HOH
HOH
671
A
GLU
228
n
1
GLU
228
A
ASP
229
n
2
ASP
229
A
MET
230
n
3
MET
230
A
PRO
231
n
4
PRO
231
A
VAL
232
n
5
VAL
232
A
GLU
233
n
6
GLU
233
A
ARG
234
n
7
ARG
234
A
ILE
235
n
8
ILE
235
A
LEU
236
n
9
LEU
236
A
GLU
237
n
10
GLU
237
A
ALA
238
n
11
ALA
238
A
GLU
239
n
12
GLU
239
A
LEU
240
n
13
LEU
240
A
ALA
241
n
14
ALA
241
A
VAL
242
n
15
VAL
242
A
GLU
243
n
16
GLU
243
A
PRO
244
n
17
PRO
244
A
n
18
245
A
n
19
246
A
n
20
247
A
n
21
248
A
n
22
249
A
n
23
250
A
n
24
251
A
n
25
252
A
n
26
253
A
n
27
254
A
n
28
255
A
n
29
256
A
n
30
257
A
n
31
258
A
n
32
259
A
n
33
260
A
n
34
261
A
ASN
262
n
35
ASN
262
A
ASP
263
n
36
ASP
263
A
PRO
264
n
37
PRO
264
A
VAL
265
n
38
VAL
265
A
THR
266
n
39
THR
266
A
ASN
267
n
40
ASN
267
A
ILE
268
n
41
ILE
268
A
CYS
269
n
42
CYS
269
A
GLN
270
n
43
GLN
270
A
ALA
271
n
44
ALA
271
A
ALA
272
n
45
ALA
272
A
ASP
273
n
46
ASP
273
A
LYS
274
n
47
LYS
274
A
GLN
275
n
48
GLN
275
A
LEU
276
n
49
LEU
276
A
PHE
277
n
50
PHE
277
A
THR
278
n
51
THR
278
A
LEU
279
n
52
LEU
279
A
VAL
280
n
53
VAL
280
A
GLU
281
n
54
GLU
281
A
TRP
282
n
55
TRP
282
A
ALA
283
n
56
ALA
283
A
LYS
284
n
57
LYS
284
A
ARG
285
n
58
ARG
285
A
ILE
286
n
59
ILE
286
A
PRO
287
n
60
PRO
287
A
HIS
288
n
61
HIS
288
A
PHE
289
n
62
PHE
289
A
SER
290
n
63
SER
290
A
GLU
291
n
64
GLU
291
A
LEU
292
n
65
LEU
292
A
PRO
293
n
66
PRO
293
A
LEU
294
n
67
LEU
294
A
ASP
295
n
68
ASP
295
A
ASP
296
n
69
ASP
296
A
GLN
297
n
70
GLN
297
A
VAL
298
n
71
VAL
298
A
ILE
299
n
72
ILE
299
A
LEU
300
n
73
LEU
300
A
LEU
301
n
74
LEU
301
A
ARG
302
n
75
ARG
302
A
ALA
303
n
76
ALA
303
A
GLY
304
n
77
GLY
304
A
TRP
305
n
78
TRP
305
A
ASN
306
n
79
ASN
306
A
GLU
307
n
80
GLU
307
A
LEU
308
n
81
LEU
308
A
LEU
309
n
82
LEU
309
A
ILE
310
n
83
ILE
310
A
ALA
311
n
84
ALA
311
A
SER
312
n
85
SER
312
A
PHE
313
n
86
PHE
313
A
SER
314
n
87
SER
314
A
HIS
315
n
88
HIS
315
A
ARG
316
n
89
ARG
316
A
SER
317
n
90
SER
317
A
ILE
318
n
91
ILE
318
A
ALA
319
n
92
ALA
319
A
VAL
320
n
93
VAL
320
A
LYS
321
n
94
LYS
321
A
ASP
322
n
95
ASP
322
A
GLY
323
n
96
GLY
323
A
ILE
324
n
97
ILE
324
A
LEU
325
n
98
LEU
325
A
LEU
326
n
99
LEU
326
A
ALA
327
n
100
ALA
327
A
THR
328
n
101
THR
328
A
GLY
329
n
102
GLY
329
A
LEU
330
n
103
LEU
330
A
HIS
331
n
104
HIS
331
A
VAL
332
n
105
VAL
332
A
HIS
333
n
106
HIS
333
A
ARG
334
n
107
ARG
334
A
ASN
335
n
108
ASN
335
A
SER
336
n
109
SER
336
A
ALA
337
n
110
ALA
337
A
HIS
338
n
111
HIS
338
A
SER
339
n
112
SER
339
A
ALA
340
n
113
ALA
340
A
GLY
341
n
114
GLY
341
A
VAL
342
n
115
VAL
342
A
GLY
343
n
116
GLY
343
A
ALA
344
n
117
ALA
344
A
ILE
345
n
118
ILE
345
A
PHE
346
n
119
PHE
346
A
ASP
347
n
120
ASP
347
A
ARG
348
n
121
ARG
348
A
VAL
349
n
122
VAL
349
A
LEU
350
n
123
LEU
350
A
THR
351
n
124
THR
351
A
GLU
352
n
125
GLU
352
A
LEU
353
n
126
LEU
353
A
VAL
354
n
127
VAL
354
A
SER
355
n
128
SER
355
A
LYS
356
n
129
LYS
356
A
MET
357
n
130
MET
357
A
ARG
358
n
131
ARG
358
A
ASP
359
n
132
ASP
359
A
MET
360
n
133
MET
360
A
GLN
361
n
134
GLN
361
A
MET
362
n
135
MET
362
A
ASP
363
n
136
ASP
363
A
LYS
364
n
137
LYS
364
A
THR
365
n
138
THR
365
A
GLU
366
n
139
GLU
366
A
LEU
367
n
140
LEU
367
A
GLY
368
n
141
GLY
368
A
CYS
369
n
142
CYS
369
A
LEU
370
n
143
LEU
370
A
ARG
371
n
144
ARG
371
A
ALA
372
n
145
ALA
372
A
ILE
373
n
146
ILE
373
A
VAL
374
n
147
VAL
374
A
LEU
375
n
148
LEU
375
A
PHE
376
n
149
PHE
376
A
ASN
377
n
150
ASN
377
A
PRO
378
n
151
PRO
378
A
ASP
379
n
152
ASP
379
A
SER
380
n
153
SER
380
A
LYS
381
n
154
LYS
381
A
GLY
382
n
155
GLY
382
A
LEU
383
n
156
LEU
383
A
SER
384
n
157
SER
384
A
ASN
385
n
158
ASN
385
A
PRO
386
n
159
PRO
386
A
ALA
387
n
160
ALA
387
A
GLU
388
n
161
GLU
388
A
VAL
389
n
162
VAL
389
A
GLU
390
n
163
GLU
390
A
ALA
391
n
164
ALA
391
A
LEU
392
n
165
LEU
392
A
ARG
393
n
166
ARG
393
A
GLU
394
n
167
GLU
394
A
LYS
395
n
168
LYS
395
A
VAL
396
n
169
VAL
396
A
TYR
397
n
170
TYR
397
A
ALA
398
n
171
ALA
398
A
SER
399
n
172
SER
399
A
LEU
400
n
173
LEU
400
A
GLU
401
n
174
GLU
401
A
ALA
402
n
175
ALA
402
A
TYR
403
n
176
TYR
403
A
CYS
404
n
177
CYS
404
A
LYS
405
n
178
LYS
405
A
HIS
406
n
179
HIS
406
A
LYS
407
n
180
LYS
407
A
TYR
408
n
181
TYR
408
A
PRO
409
n
182
PRO
409
A
GLU
410
n
183
GLU
410
A
GLN
411
n
184
GLN
411
A
PRO
412
n
185
PRO
412
A
GLY
413
n
186
GLY
413
A
ARG
414
n
187
ARG
414
A
PHE
415
n
188
PHE
415
A
ALA
416
n
189
ALA
416
A
LYS
417
n
190
LYS
417
A
LEU
418
n
191
LEU
418
A
LEU
419
n
192
LEU
419
A
LEU
420
n
193
LEU
420
A
ARG
421
n
194
ARG
421
A
LEU
422
n
195
LEU
422
A
PRO
423
n
196
PRO
423
A
ALA
424
n
197
ALA
424
A
LEU
425
n
198
LEU
425
A
ARG
426
n
199
ARG
426
A
SER
427
n
200
SER
427
A
ILE
428
n
201
ILE
428
A
GLY
429
n
202
GLY
429
A
LEU
430
n
203
LEU
430
A
LYS
431
n
204
LYS
431
A
CYS
432
n
205
CYS
432
A
LEU
433
n
206
LEU
433
A
GLU
434
n
207
GLU
434
A
HIS
435
n
208
HIS
435
A
LEU
436
n
209
LEU
436
A
PHE
437
n
210
PHE
437
A
PHE
438
n
211
PHE
438
A
PHE
439
n
212
PHE
439
A
LYS
440
n
213
LYS
440
A
LEU
441
n
214
LEU
441
A
ILE
442
n
215
ILE
442
A
GLY
443
n
216
GLY
443
A
ASP
444
n
217
ASP
444
A
THR
445
n
218
THR
445
A
PRO
446
n
219
PRO
446
A
ILE
447
n
220
ILE
447
A
ASP
448
n
221
ASP
448
A
THR
449
n
222
THR
449
A
PHE
450
n
223
PHE
450
A
LEU
451
n
224
LEU
451
A
MET
452
n
225
MET
452
A
GLU
453
n
226
GLU
453
A
MET
454
n
227
MET
454
A
LEU
455
n
228
LEU
455
A
GLU
456
n
229
GLU
456
A
ALA
457
n
230
ALA
457
A
PRO
458
n
231
PRO
458
A
LYS
686
n
1
LYS
686
B
HIS
687
n
2
HIS
687
B
LYS
688
n
3
LYS
688
B
ILE
689
n
4
ILE
689
B
LEU
690
n
5
LEU
690
B
HIS
691
n
6
HIS
691
B
ARG
692
n
7
ARG
692
B
LEU
693
n
8
LEU
693
B
LEU
694
n
9
LEU
694
B
GLN
695
n
10
GLN
695
B
ASP
696
n
11
ASP
696
B
n
12
697
B
n
13
698
B
author_defined_assembly
4
tetrameric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
7_555
y,x,-z
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
A
N
ILE
324
A
N
ILE
97
A
O
VAL
332
A
O
VAL
105
1
A
LYS
245
A
LYS
18
1
Y
1
A
THR
246
A
THR
19
1
Y
1
A
GLU
247
A
GLU
20
1
Y
1
A
THR
248
A
THR
21
1
Y
1
A
TYR
249
A
TYR
22
1
Y
1
A
VAL
250
A
VAL
23
1
Y
1
A
GLU
251
A
GLU
24
1
Y
1
A
ALA
252
A
ALA
25
1
Y
1
A
ASN
253
A
ASN
26
1
Y
1
A
MET
254
A
MET
27
1
Y
1
A
GLY
255
A
GLY
28
1
Y
1
A
LEU
256
A
LEU
29
1
Y
1
A
ASN
257
A
ASN
30
1
Y
1
A
PRO
258
A
PRO
31
1
Y
1
A
SER
259
A
SER
32
1
Y
1
A
SER
260
A
SER
33
1
Y
1
A
PRO
261
A
PRO
34
1
Y
1
B
SER
697
B
SER
12
1
Y
1
B
SER
698
B
SER
13
1
Y
1
A
A
O
O
HOH
HOH
610
663
2.07
1
A
MET
230
-143.97
53.42
1
A
HIS
288
80.57
-21.04
1
A
LEU
353
-110.22
-76.79
1
A
LYS
405
71.41
-52.81
1
A
THR
445
66.30
108.06
0.288
0.246
0.288
0.246
2.10
29.30
585
15301
14716
96.2
Random
1
2.0
2.0
MOLECULAR REPLACEMENT
PDB ENTRY 3OAP
Engh & Huber
2.10
29.30
71
1885
26
0
1788
0.009135
1.16172
2.10
29.30
4K6I
125162
2.0
2.0
0.078
0.350
1
14.1
8.12
96.9
2.10
2.18
4.5
1478
0.350
1
7.73
99.7
data collection
HKL-2000
refinement
CNS
data reduction
HKL-2000
data scaling
HKL-2000
phasing
CNS
Crystal structure of human retinoid X receptor alpha-ligand binding domain complex with Targretin and the coactivator peptide GRIP-1
1
N
N
2
N
N
3
N
N
4
N
N
A
PRO
231
A
PRO
4
HELX_P
A
GLU
243
A
GLU
16
1
1
13
A
ASP
263
A
ASP
36
HELX_P
A
ARG
285
A
ARG
58
1
2
23
A
PRO
293
A
PRO
66
HELX_P
A
SER
317
A
SER
90
1
3
25
A
ARG
334
A
ARG
107
HELX_P
A
SER
339
A
SER
112
1
4
6
A
VAL
342
A
VAL
115
HELX_P
A
LEU
353
A
LEU
126
1
5
12
A
LEU
353
A
LEU
126
HELX_P
A
MET
360
A
MET
133
1
6
8
A
ASP
363
A
ASP
136
HELX_P
A
PHE
376
A
PHE
149
1
7
14
A
ASN
385
A
ASN
158
HELX_P
A
LYS
407
A
LYS
180
1
8
23
A
GLY
413
A
GLY
186
HELX_P
A
LEU
420
A
LEU
193
1
9
8
A
ARG
421
A
ARG
194
HELX_P
A
GLY
443
A
GLY
216
1
10
23
A
ASP
448
A
ASP
221
HELX_P
A
LEU
455
A
LEU
228
1
11
8
B
HIS
687
B
HIS
2
HELX_P
B
ASP
696
B
ASP
11
1
12
10
TRANSCRIPTION
ligand binding domain, cancer, Targretin (bexarotene), TRANSCRIPTION
A
ALA
457
A
ALA
230
1
A
PRO
458
A
PRO
231
0.01
RXRA_HUMAN
UNP
1
228
P19793
EDMPVERILEAELAVEPKTETYVEANMGLNPSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNE
LLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPA
EVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAP
NCOA2_HUMAN
UNP
2
686
Q15596
KHKILHRLLQDSS
228
458
4K6I
228
458
P19793
A
1
1
231
686
698
4K6I
686
698
Q15596
B
2
1
13
2
anti-parallel
A
GLY
323
A
GLY
96
A
LEU
325
A
LEU
98
A
HIS
331
A
HIS
104
A
HIS
333
A
HIS
106
BINDING SITE FOR RESIDUE 9RA A 500
A
9RA
500
Software
11
BINDING SITE FOR CHAIN B OF NUCLEAR RECEPTOR COACTIVATOR 2
Software
20
A
ILE
268
A
ILE
41
11
1_555
A
ALA
271
A
ALA
44
11
1_555
A
ALA
272
A
ALA
45
11
1_555
A
GLN
275
A
GLN
48
11
1_555
A
LEU
309
A
LEU
82
11
1_555
A
PHE
313
A
PHE
86
11
1_555
A
ARG
316
A
ARG
89
11
1_555
A
LEU
326
A
LEU
99
11
1_555
A
ALA
327
A
ALA
100
11
1_555
A
ILE
345
A
ILE
118
11
1_555
A
HOH
607
D
HOH
11
1_555
A
ASP
263
A
ASP
36
20
4_455
A
VAL
265
A
VAL
38
20
4_455
A
PHE
277
A
PHE
50
20
1_555
A
VAL
280
A
VAL
53
20
1_555
A
LYS
284
A
LYS
57
20
1_555
A
GLN
297
A
GLN
70
20
1_555
A
VAL
298
A
VAL
71
20
1_555
A
LEU
301
A
LEU
74
20
1_555
A
ARG
302
A
ARG
75
20
1_555
A
SER
339
A
SER
112
20
4_455
A
ALA
340
A
ALA
113
20
4_455
A
GLY
341
A
GLY
114
20
4_455
A
LYS
431
A
LYS
204
20
4_455
A
PHE
438
A
PHE
211
20
4_455
A
PHE
439
A
PHE
212
20
4_455
A
ASP
444
A
ASP
217
20
4_455
A
THR
445
A
THR
218
20
4_455
A
PHE
450
A
PHE
223
20
1_555
A
GLU
453
A
GLU
226
20
1_555
A
HOH
648
D
HOH
20
4_455
96
P 43 21 2