0.008911
0.000000
0.000000
0.000000
0.007012
0.000000
0.000000
0.000000
0.014992
0.00000
0.00000
0.00000
Betz, K.
Diederichs, K.
Marx, A.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
112.215
142.616
66.702
C31 H39 N2 O2 1
471.654
1-(3-hydroxypropyl)-2-{(1E,3E,5E)-5-[1-(3-hydroxypropyl)-3,3-dimethyl-1,3-dihydro-2H-indol-2-ylidene]penta-1,3-dien-1-y l}-3,3-dimethyl-3H-indolium
N,N'-(dipropyl)-tetramethylindodicarbocyanine
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Cl -1
35.453
CHLORIDE ION
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O6 P
291.198
n
2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
C2 H6 O2
62.068
1,2-ETHANEDIOL
ETHYLENE GLYCOL
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
O4 S -2
96.063
SULFATE ION
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
N
C
N
3
N
O
N
4
N
C
N
5
N
C
N
6
N
C
N
7
N
C
Y
8
N
C
Y
9
N
C
Y
10
N
C
Y
11
N
C
Y
12
N
C
Y
13
N
C
N
14
N
O
N
15
N
C
N
16
N
N
N
17
N
C
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
C
N
22
N
C
Y
23
N
C
Y
24
N
C
Y
25
N
C
Y
26
N
C
N
27
N
C
Y
28
N
C
Y
29
N
C
N
30
N
C
N
31
N
C
N
32
N
C
N
33
N
C
N
34
N
C
N
35
N
C
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
H
N
42
N
H
N
43
N
H
N
44
N
H
N
45
N
H
N
46
N
H
N
47
N
H
N
48
N
H
N
49
N
H
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
H
N
75
N
N
N
76
S
C
N
77
N
C
N
78
N
O
N
79
N
C
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
N
N
96
N
C
N
97
N
N
N
98
N
N
N
99
N
O
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
N
N
116
S
C
N
117
N
C
N
118
N
O
N
119
N
C
N
120
N
C
N
121
N
O
N
122
N
N
N
123
N
O
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
N
N
133
S
C
N
134
N
C
N
135
N
O
N
136
N
C
N
137
N
C
N
138
N
O
N
139
N
O
N
140
N
O
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
CL
N
149
N
N
N
150
R
C
N
151
N
C
N
152
N
O
N
153
N
C
N
154
N
S
N
155
N
O
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
O
N
164
N
P
N
165
N
O
N
166
N
O
N
167
N
O
N
168
N
C
N
169
R
C
N
170
N
O
N
171
S
C
N
172
N
O
N
173
N
C
N
174
R
C
Y
175
N
N
Y
176
N
C
Y
177
N
N
Y
178
N
C
Y
179
N
C
N
180
N
N
Y
181
N
N
Y
182
N
C
Y
183
N
N
Y
184
N
C
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
O
N
200
N
P
N
201
N
O
N
202
N
O
N
203
N
O
N
204
N
C
N
205
R
C
N
206
N
O
N
207
S
C
N
208
N
O
N
209
N
C
N
210
R
C
N
211
N
N
N
212
N
C
N
213
N
O
N
214
N
N
N
215
N
C
N
216
N
N
N
217
N
C
N
218
N
C
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
O
N
234
N
P
N
235
N
O
N
236
N
O
N
237
N
O
N
238
N
C
N
239
R
C
N
240
N
O
N
241
S
C
N
242
N
O
N
243
N
C
N
244
R
C
Y
245
N
N
Y
246
N
C
Y
247
N
N
Y
248
N
C
N
249
N
C
N
250
N
O
N
251
N
N
N
252
N
C
N
253
N
N
N
254
N
N
Y
255
N
C
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
N
N
271
N
C
N
272
N
N
N
273
N
C
N
274
N
C
N
275
N
C
N
276
N
O
N
277
N
N
N
278
R
C
N
279
N
C
N
280
N
C
N
281
S
C
N
282
N
O
N
283
N
C
N
284
N
O
N
285
N
P
N
286
N
O
N
287
N
O
N
288
N
O
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
O
N
304
N
P
N
305
N
O
N
306
N
O
N
307
N
O
N
308
N
C
N
309
R
C
N
310
N
O
N
311
S
C
N
312
N
O
N
313
N
C
N
314
R
C
N
315
N
N
N
316
N
C
N
317
N
O
N
318
N
N
N
319
N
C
N
320
N
O
N
321
N
C
N
322
N
C
N
323
N
C
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
C
N
340
N
O
N
341
N
C
N
342
N
O
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
N
N
350
S
C
N
351
N
C
N
352
N
O
N
353
N
C
N
354
N
C
N
355
N
C
N
356
N
O
N
357
N
N
N
358
N
O
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
N
N
370
S
C
N
371
N
C
N
372
N
O
N
373
N
C
N
374
N
C
N
375
N
C
N
376
N
O
N
377
N
O
N
378
N
O
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
N
N
389
N
C
N
390
N
C
N
391
N
O
N
392
N
O
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
N
N
399
S
C
N
400
N
C
N
401
N
O
N
402
N
C
Y
403
N
C
Y
404
N
N
Y
405
N
C
Y
406
N
C
Y
407
N
N
N
408
N
O
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
O
N
420
N
H
N
421
N
H
N
422
N
N
N
423
S
C
N
424
N
C
N
425
N
O
N
426
S
C
N
427
N
C
N
428
N
C
N
429
N
C
N
430
N
O
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
N
N
445
S
C
N
446
N
C
N
447
N
O
N
448
N
C
N
449
N
C
N
450
N
C
N
451
N
C
N
452
N
O
N
453
N
H
N
454
N
H
N
455
N
H
N
456
N
H
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
H
N
462
N
H
N
463
N
H
N
464
N
H
N
465
N
H
N
466
N
N
N
467
S
C
N
468
N
C
N
469
N
O
N
470
N
C
N
471
N
C
N
472
N
C
N
473
N
C
N
474
N
N
N
475
N
O
N
476
N
H
N
477
N
H
N
478
N
H
N
479
N
H
N
480
N
H
N
481
N
H
N
482
N
H
N
483
N
H
N
484
N
H
N
485
N
H
N
486
N
H
N
487
N
H
N
488
N
H
N
489
N
H
N
490
N
H
N
491
N
N
N
492
S
C
N
493
N
C
N
494
N
O
N
495
N
C
N
496
N
C
N
497
N
S
N
498
N
C
N
499
N
O
N
500
N
H
N
501
N
H
N
502
N
H
N
503
N
H
N
504
N
H
N
505
N
H
N
506
N
H
N
507
N
H
N
508
N
H
N
509
N
H
N
510
N
H
N
511
N
N
N
512
S
C
N
513
N
C
N
514
N
O
N
515
N
C
Y
516
N
C
Y
517
N
C
Y
518
N
C
Y
519
N
C
Y
520
N
C
Y
521
N
C
N
522
N
O
N
523
N
H
N
524
N
H
N
525
N
H
N
526
N
H
N
527
N
H
N
528
N
H
N
529
N
H
N
530
N
H
N
531
N
H
N
532
N
H
N
533
N
H
N
534
N
N
N
535
S
C
N
536
N
C
N
537
N
O
N
538
N
C
N
539
N
C
N
540
N
C
N
541
N
O
N
542
N
H
N
543
N
H
N
544
N
H
N
545
N
H
N
546
N
H
N
547
N
H
N
548
N
H
N
549
N
H
N
550
N
H
N
551
N
N
N
552
S
C
N
553
N
C
N
554
N
O
N
555
N
C
N
556
N
O
N
557
N
O
N
558
N
H
N
559
N
H
N
560
N
H
N
561
N
H
N
562
N
H
N
563
N
H
N
564
N
H
N
565
N
S
N
566
N
O
N
567
N
O
N
568
N
O
N
569
N
O
N
570
N
N
N
571
S
C
N
572
N
C
N
573
N
O
N
574
R
C
N
575
N
O
N
576
N
C
N
577
N
O
N
578
N
H
N
579
N
H
N
580
N
H
N
581
N
H
N
582
N
H
N
583
N
H
N
584
N
H
N
585
N
H
N
586
N
H
N
587
N
N
N
588
S
C
N
589
N
C
N
590
N
O
N
591
N
C
Y
592
N
C
Y
593
N
C
Y
594
N
C
Y
595
N
N
Y
596
N
C
Y
597
N
C
Y
598
N
C
Y
599
N
C
Y
600
N
C
N
601
N
O
N
602
N
H
N
603
N
H
N
604
N
H
N
605
N
H
N
606
N
H
N
607
N
H
N
608
N
H
N
609
N
H
N
610
N
H
N
611
N
H
N
612
N
H
N
613
N
H
N
614
N
N
N
615
S
C
N
616
N
C
N
617
N
O
N
618
N
C
Y
619
N
C
Y
620
N
C
Y
621
N
C
Y
622
N
C
Y
623
N
C
Y
624
N
C
N
625
N
O
N
626
N
O
N
627
N
H
N
628
N
H
N
629
N
H
N
630
N
H
N
631
N
H
N
632
N
H
N
633
N
H
N
634
N
H
N
635
N
H
N
636
N
H
N
637
N
H
N
638
N
N
N
639
S
C
N
640
N
C
N
641
N
O
N
642
N
C
N
643
N
C
N
644
N
C
N
645
N
O
N
646
N
H
N
647
N
H
N
648
N
H
N
649
N
H
N
650
N
H
N
651
N
H
N
652
N
H
N
653
N
H
N
654
N
H
N
655
N
H
N
656
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
Y
4
N
doub
Y
5
N
sing
N
6
N
sing
Y
7
N
sing
N
8
N
sing
N
9
N
sing
Y
10
N
doub
Y
11
N
doub
N
12
E
doub
N
13
N
sing
N
14
N
sing
Y
15
N
sing
N
16
N
sing
N
17
E
doub
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
E
doub
N
26
N
sing
N
27
N
doub
N
28
N
sing
N
29
N
sing
Y
30
N
doub
Y
31
N
sing
Y
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
Y
36
N
doub
Y
37
N
doub
Y
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
doub
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
doub
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
doub
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
doub
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
doub
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
doub
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
doub
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
doub
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
doub
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
Y
183
N
sing
Y
184
N
sing
Y
185
N
doub
N
186
N
sing
Y
187
N
sing
Y
188
N
sing
Y
189
N
doub
N
190
N
sing
Y
191
N
doub
N
192
N
sing
N
193
N
sing
Y
194
N
sing
Y
195
N
doub
N
196
N
sing
Y
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
doub
N
224
N
sing
N
225
N
doub
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
doub
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
doub
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
Y
256
N
sing
Y
257
N
sing
Y
258
N
doub
N
259
N
sing
Y
260
N
sing
N
261
N
sing
Y
262
N
doub
N
263
N
doub
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
doub
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
doub
N
277
N
doub
N
278
N
sing
N
279
N
sing
N
280
N
doub
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
doub
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
doub
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
doub
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
doub
N
336
N
sing
N
337
N
sing
N
338
N
doub
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
doub
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
doub
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
doub
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
doub
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
doub
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
doub
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
Y
409
N
sing
Y
410
N
doub
Y
411
N
doub
N
412
N
sing
Y
413
N
sing
N
414
N
sing
Y
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
doub
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
doub
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
sing
N
464
N
sing
N
465
N
sing
N
466
N
sing
N
467
N
sing
N
468
N
sing
N
469
N
doub
N
470
N
sing
N
471
N
sing
N
472
N
sing
N
473
N
sing
N
474
N
sing
N
475
N
sing
N
476
N
sing
N
477
N
sing
N
478
N
sing
N
479
N
sing
N
480
N
sing
N
481
N
sing
N
482
N
sing
N
483
N
sing
N
484
N
sing
N
485
N
sing
N
486
N
sing
N
487
N
sing
N
488
N
sing
N
489
N
sing
N
490
N
sing
N
491
N
sing
N
492
N
sing
N
493
N
doub
N
494
N
sing
N
495
N
sing
N
496
N
sing
N
497
N
sing
N
498
N
sing
N
499
N
sing
N
500
N
sing
N
501
N
sing
N
502
N
sing
N
503
N
sing
N
504
N
sing
N
505
N
sing
N
506
N
sing
N
507
N
sing
N
508
N
sing
N
509
N
sing
N
510
N
sing
N
511
N
sing
N
512
N
doub
N
513
N
sing
N
514
N
sing
N
515
N
sing
N
516
N
sing
Y
517
N
doub
Y
518
N
sing
Y
519
N
sing
N
520
N
sing
Y
521
N
doub
N
522
N
sing
Y
523
N
doub
N
524
N
sing
Y
525
N
sing
N
526
N
sing
N
527
N
sing
N
528
N
sing
N
529
N
sing
N
530
N
sing
N
531
N
sing
N
532
N
sing
N
533
N
sing
N
534
N
sing
N
535
N
doub
N
536
N
sing
N
537
N
sing
N
538
N
sing
N
539
N
sing
N
540
N
sing
N
541
N
sing
N
542
N
sing
N
543
N
sing
N
544
N
sing
N
545
N
sing
N
546
N
sing
N
547
N
sing
N
548
N
sing
N
549
N
sing
N
550
N
sing
N
551
N
sing
N
552
N
doub
N
553
N
sing
N
554
N
sing
N
555
N
sing
N
556
N
sing
N
557
N
sing
N
558
N
sing
N
559
N
doub
N
560
N
doub
N
561
N
sing
N
562
N
sing
N
563
N
sing
N
564
N
sing
N
565
N
sing
N
566
N
sing
N
567
N
sing
N
568
N
sing
N
569
N
doub
N
570
N
sing
N
571
N
sing
N
572
N
sing
N
573
N
sing
N
574
N
sing
N
575
N
sing
N
576
N
sing
N
577
N
sing
N
578
N
sing
N
579
N
sing
N
580
N
sing
N
581
N
sing
N
582
N
sing
N
583
N
sing
N
584
N
sing
N
585
N
doub
N
586
N
sing
N
587
N
sing
N
588
N
sing
N
589
N
sing
Y
590
N
doub
Y
591
N
sing
Y
592
N
sing
N
593
N
sing
Y
594
N
doub
Y
595
N
sing
Y
596
N
sing
N
597
N
sing
Y
598
N
sing
Y
599
N
doub
N
600
N
sing
Y
601
N
doub
N
602
N
sing
Y
603
N
sing
N
604
N
sing
N
605
N
sing
N
606
N
sing
N
607
N
sing
N
608
N
sing
N
609
N
sing
N
610
N
sing
N
611
N
sing
N
612
N
sing
N
613
N
doub
N
614
N
sing
N
615
N
sing
N
616
N
sing
N
617
N
sing
Y
618
N
doub
Y
619
N
sing
Y
620
N
sing
N
621
N
sing
Y
622
N
doub
N
623
N
sing
Y
624
N
doub
N
625
N
sing
Y
626
N
sing
N
627
N
sing
N
628
N
sing
N
629
N
sing
N
630
N
sing
N
631
N
sing
N
632
N
sing
N
633
N
sing
N
634
N
sing
N
635
N
sing
N
636
N
sing
N
637
N
doub
N
638
N
sing
N
639
N
sing
N
640
N
sing
N
641
N
sing
N
642
N
sing
N
643
N
sing
N
644
N
sing
N
645
N
sing
N
646
N
sing
N
647
N
sing
N
648
N
sing
GE
Chembiochem
1439-4227
14
1058
1062
10.1002/cbic.201300175
23733496
Structures of KOD and 9N DNA Polymerases Complexed with Primer Template Duplex
2013
10.2210/pdb4k8x/pdb
pdb_00004k8x
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
PIXEL
2012-07-05
PSI PILATUS 6M
LN2 cooled fixed-exit
Si(111) monochromator
SINGLE WAVELENGTH
M
x-ray
1
0.97793
1.0
X06SA
SLS
0.97793
SYNCHROTRON
SLS BEAMLINE X06SA
89826.570
DNA polymerase
2.7.7.7
D141A, E143A
1
man
polymer
DNA template
4948.217
DNA (5'-D(P*AP*AP*AP*GP*GP*CP*GP*CP*AP*GP*TP*TP*CP*GP*CP*G)-3')
1
syn
polymer
DNA primer
3632.382
DNA (5'-D(*CP*GP*CP*GP*AP*AP*CP*TP*GP*CP*GP*(DOC))-3')
1
syn
polymer
96.063
SULFATE ION
11
syn
non-polymer
35.453
CHLORIDE ION
1
syn
non-polymer
471.654
1-(3-hydroxypropyl)-2-{(1E,3E,5E)-5-[1-(3-hydroxypropyl)-3,3-dimethyl-1,3-dihydro-2H-indol-2-ylidene]penta-1,3-dien-1-y l}-3,3-dimethyl-3H-indolium
1
syn
non-polymer
62.068
1,2-ETHANEDIOL
1
syn
non-polymer
18.015
water
134
nat
water
no
no
MILDTDYITENGKPVIRVFKKENGEFKIEYDRTFEPYFYALLKDDSAIEDVKKVTAKRHGTVVKVKRAEKVQKKFLGRPI
EVWKLYFNHPQDVPAIRDRIRAHPAVVDIYEYDIPFAKRYLIDKGLIPMEGDEELTMLAFAIATLYHEGEEFGTGPILMI
SYADGSEARVITWKKIDLPYVDVVSTEKEMIKRFLRVVREKDPDVLITYNGDNFDFAYLKKRCEELGIKFTLGRDGSEPK
IQRMGDRFAVEVKGRIHFDLYPVIRRTINLPTYTLEAVYEAVFGKPKEKVYAEEIAQAWESGEGLERVARYSMEDAKVTY
ELGREFFPMEAQLSRLIGQSLWDVSRSSTGNLVEWFLLRKAYKRNELAPNKPDERELARRRGGYAGGYVKEPERGLWDNI
VYLDFRSLYPSIIITHNVSPDTLNREGCKEYDVAPEVGHKFCKDFPGFIPSLLGDLLEERQKIKRKMKATVDPLEKKLLD
YRQRAIKILANSFYGYYGYAKARWYCKECAESVTAWGREYIEMVIRELEEKFGFKVLYADTDGLHATIPGADAETVKKKA
KEFLKYINPKLPGLLELEYEGFYVRGFFVTKKKYAVIDEEGKITTRGLEIVRRDWSEIAKETQARVLEAILKHGDVEEAV
RIVKEVTEKLSKYEVPPEKLVIHEQITRDLRDYKATGPHVAVAKRLAARGVKIRPGTVISYIVLKGSGRIGDRAIPADEF
DPTKHRYDAEYYIENQVLPAVERILKAFGYRKEDLRYQKTKQVGLGAWLKVKGKK
MILDTDYITENGKPVIRVFKKENGEFKIEYDRTFEPYFYALLKDDSAIEDVKKVTAKRHGTVVKVKRAEKVQKKFLGRPI
EVWKLYFNHPQDVPAIRDRIRAHPAVVDIYEYDIPFAKRYLIDKGLIPMEGDEELTMLAFAIATLYHEGEEFGTGPILMI
SYADGSEARVITWKKIDLPYVDVVSTEKEMIKRFLRVVREKDPDVLITYNGDNFDFAYLKKRCEELGIKFTLGRDGSEPK
IQRMGDRFAVEVKGRIHFDLYPVIRRTINLPTYTLEAVYEAVFGKPKEKVYAEEIAQAWESGEGLERVARYSMEDAKVTY
ELGREFFPMEAQLSRLIGQSLWDVSRSSTGNLVEWFLLRKAYKRNELAPNKPDERELARRRGGYAGGYVKEPERGLWDNI
VYLDFRSLYPSIIITHNVSPDTLNREGCKEYDVAPEVGHKFCKDFPGFIPSLLGDLLEERQKIKRKMKATVDPLEKKLLD
YRQRAIKILANSFYGYYGYAKARWYCKECAESVTAWGREYIEMVIRELEEKFGFKVLYADTDGLHATIPGADAETVKKKA
KEFLKYINPKLPGLLELEYEGFYVRGFFVTKKKYAVIDEEGKITTRGLEIVRRDWSEIAKETQARVLEAILKHGDVEEAV
RIVKEVTEKLSKYEVPPEKLVIHEQITRDLRDYKATGPHVAVAKRLAARGVKIRPGTVISYIVLKGSGRIGDRAIPADEF
DPTKHRYDAEYYIENQVLPAVERILKAFGYRKEDLRYQKTKQVGLGAWLKVKGKK
A
polypeptide(L)
no
no
(DA)(DA)(DA)(DG)(DG)(DC)(DG)(DC)(DA)(DG)(DT)(DT)(DC)(DG)(DC)(DG)
AAAGGCGCAGTTCGCG
T
polydeoxyribonucleotide
no
yes
(DC)(DG)(DC)(DG)(DA)(DA)(DC)(DT)(DG)(DC)(DG)(DOC)
CGCGAACTGCGC
P
polydeoxyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
9oN-7
sample
pol, polA
103799
Thermococcus
562
Escherichia coli
BL21 DE3
plasmid
pET21b
1
2.71
54.64
VAPOR DIFFUSION, SITTING DROP
0.2M Lithium chloride, 2.2M Ammonium sulfate, VAPOR DIFFUSION, SITTING DROP, temperature 291K
291
-11.577
1
19
T
5
P
12
2.381
T_DG5:DOC12_P
1
-15.565
-0.362
0.180
-0.224
-6.510
1
19
T
6
P
11
2.292
T_DC6:DG11_P
2
-0.977
0.099
0.000
-0.149
-10.940
1
19
T
7
P
10
5.690
T_DG7:DC10_P
3
-22.387
-0.071
-0.215
-0.095
-17.452
1
19
T
8
P
9
2.879
T_DC8:DG9_P
4
-7.176
0.596
0.172
-0.204
2.589
1
20
T
9
P
8
-3.128
T_DA9:DT8_P
5
-3.279
0.143
-0.027
-0.067
1.602
1
19
T
10
P
7
3.263
T_DG10:DC7_P
6
-7.550
0.256
0.168
-0.119
-1.046
1
20
T
11
P
6
1.244
T_DT11:DA6_P
7
-13.117
-0.146
0.405
-0.333
-0.744
1
20
T
12
P
5
-0.450
T_DT12:DA5_P
8
-14.273
0.087
-0.032
-0.352
0.291
1
T
13
P
4
10.768
T_DC13:DG4_P
9
-6.539
-0.521
-0.242
0.184
9.537
1
19
T
14
P
3
-4.572
T_DG14:DC3_P
10
-11.955
-0.705
0.557
-0.068
-5.806
1
19
T
15
P
2
-3.635
T_DC15:DG2_P
11
-11.559
1.155
0.426
-0.680
11.980
1
19
T
16
P
1
-2.734
T_DG16:DC1_P
12
-9.291
0.286
0.376
-0.721
2.976
31.318
T
T
5
6
12.609
P
P
12
11
3.259
6.734
-0.244
-0.692
TT_DG5DC6:DG11DOC12_PP
1
4.385
-8.210
30.295
-2.515
1.254
3.330
43.390
T
T
6
7
16.750
P
P
11
10
3.498
12.231
0.086
-0.149
TT_DC6DG7:DC10DG11_PP
2
0.538
-0.737
41.707
-1.468
-0.060
3.572
31.787
T
T
7
8
-8.139
P
P
10
9
3.556
-4.442
0.059
-0.427
TT_DG7DC8:DG9DC10_PP
3
-1.799
3.296
31.433
0.111
-0.468
2.939
30.185
T
T
8
9
7.735
P
P
9
8
2.985
4.016
-0.945
0.079
TT_DC8DA9:DT8DG9_PP
4
0.972
-1.871
29.907
-0.591
1.995
3.175
29.726
T
T
9
10
9.058
P
P
8
7
3.444
4.621
0.905
-0.825
TT_DA9DG10:DC7DT8_PP
5
-2.943
5.768
29.228
-2.597
-2.394
3.343
31.149
T
T
10
11
10.510
P
P
7
6
3.513
5.614
-1.051
-0.676
TT_DG10DT11:DA6DC7_PP
6
-0.109
0.205
30.651
-2.391
1.936
3.095
38.596
T
T
11
12
6.660
P
P
6
5
3.189
4.387
-0.197
-0.383
TT_DT11DT12:DA5DA6_PP
7
3.789
-5.752
38.175
-1.102
0.749
3.454
31.193
T
T
12
13
1.035
P
P
5
4
3.291
0.555
1.363
0.684
TT_DT12DC13:DG4DA5_PP
8
4.245
-7.918
30.905
1.162
-1.698
3.300
34.389
T
T
13
14
8.235
P
P
4
3
3.160
4.830
-0.722
0.684
TT_DC13DG14:DC3DG4_PP
9
-5.994
10.220
33.542
0.402
0.285
3.725
42.364
T
T
14
15
-2.103
P
P
3
2
3.709
-1.519
-0.248
-0.565
TT_DG14DC15:DG2DC3_PP
10
0.252
-0.349
42.337
-0.605
0.373
2.910
30.919
T
T
15
16
9.913
P
P
2
1
2.900
5.260
-0.378
0.327
TT_DC15DG16:DC1DG2_PP
11
0.369
-0.696
30.477
-0.297
0.772
chem_comp
chem_comp_atom
chem_comp_bond
database_2
entity
pdbx_entity_nonpoly
pdbx_initial_refinement_model
struct_conn
struct_ref_seq_dif
struct_site
repository
Initial release
Data collection
Database references
Derived calculations
Refinement description
Structure summary
1
0
2013-06-26
1
1
2023-11-08
_chem_comp.name
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_entity.pdbx_description
_pdbx_entity_nonpoly.name
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Apo structure of 9 N DNA polymerase
RCSB
Y
PDBJ
2013-04-19
REL
REL
SO4
SULFATE ION
CL
CHLORIDE ION
5CY
1-(3-hydroxypropyl)-2-{(1E,3E,5E)-5-[1-(3-hydroxypropyl)-3,3-dimethyl-1,3-dihydro-2H-indol-2-ylidene]penta-1,3-dien-1-y l}-3,3-dimethyl-3H-indolium
EDO
1,2-ETHANEDIOL
HOH
water
1QHT
PDB
experimental model
SO4
801
4
SO4
SO4
801
A
SO4
802
4
SO4
SO4
802
A
SO4
803
4
SO4
SO4
803
A
SO4
804
4
SO4
SO4
804
A
SO4
805
4
SO4
SO4
805
A
SO4
806
4
SO4
SO4
806
A
SO4
807
4
SO4
SO4
807
A
SO4
808
4
SO4
SO4
808
A
SO4
809
4
SO4
SO4
809
A
CL
811
5
CL
CL
810
A
SO4
102
4
SO4
SO4
811
A
SO4
1
4
SO4
SO4
812
A
5CY
101
6
5CY
5CY
101
T
EDO
103
7
EDO
EDO
102
T
HOH
901
8
HOH
HOH
901
A
HOH
902
8
HOH
HOH
902
A
HOH
903
8
HOH
HOH
903
A
HOH
904
8
HOH
HOH
904
A
HOH
905
8
HOH
HOH
905
A
HOH
906
8
HOH
HOH
906
A
HOH
907
8
HOH
HOH
907
A
HOH
908
8
HOH
HOH
908
A
HOH
909
8
HOH
HOH
909
A
HOH
910
8
HOH
HOH
910
A
HOH
911
8
HOH
HOH
911
A
HOH
912
8
HOH
HOH
912
A
HOH
913
8
HOH
HOH
913
A
HOH
914
8
HOH
HOH
914
A
HOH
915
8
HOH
HOH
915
A
HOH
916
8
HOH
HOH
916
A
HOH
917
8
HOH
HOH
917
A
HOH
918
8
HOH
HOH
918
A
HOH
919
8
HOH
HOH
919
A
HOH
920
8
HOH
HOH
920
A
HOH
921
8
HOH
HOH
921
A
HOH
922
8
HOH
HOH
922
A
HOH
923
8
HOH
HOH
923
A
HOH
924
8
HOH
HOH
924
A
HOH
925
8
HOH
HOH
925
A
HOH
926
8
HOH
HOH
926
A
HOH
927
8
HOH
HOH
927
A
HOH
928
8
HOH
HOH
928
A
HOH
929
8
HOH
HOH
929
A
HOH
930
8
HOH
HOH
930
A
HOH
931
8
HOH
HOH
931
A
HOH
932
8
HOH
HOH
932
A
HOH
933
8
HOH
HOH
933
A
HOH
934
8
HOH
HOH
934
A
HOH
935
8
HOH
HOH
935
A
HOH
936
8
HOH
HOH
936
A
HOH
937
8
HOH
HOH
937
A
HOH
938
8
HOH
HOH
938
A
HOH
939
8
HOH
HOH
939
A
HOH
940
8
HOH
HOH
940
A
HOH
941
8
HOH
HOH
941
A
HOH
942
8
HOH
HOH
942
A
HOH
943
8
HOH
HOH
943
A
HOH
944
8
HOH
HOH
944
A
HOH
945
8
HOH
HOH
945
A
HOH
946
8
HOH
HOH
946
A
HOH
947
8
HOH
HOH
947
A
HOH
948
8
HOH
HOH
948
A
HOH
949
8
HOH
HOH
949
A
HOH
950
8
HOH
HOH
950
A
HOH
951
8
HOH
HOH
951
A
HOH
952
8
HOH
HOH
952
A
HOH
953
8
HOH
HOH
953
A
HOH
955
8
HOH
HOH
954
A
HOH
956
8
HOH
HOH
955
A
HOH
957
8
HOH
HOH
956
A
HOH
959
8
HOH
HOH
957
A
HOH
960
8
HOH
HOH
958
A
HOH
961
8
HOH
HOH
959
A
HOH
963
8
HOH
HOH
960
A
HOH
964
8
HOH
HOH
961
A
HOH
965
8
HOH
HOH
962
A
HOH
966
8
HOH
HOH
963
A
HOH
967
8
HOH
HOH
964
A
HOH
968
8
HOH
HOH
965
A
HOH
969
8
HOH
HOH
966
A
HOH
970
8
HOH
HOH
967
A
HOH
971
8
HOH
HOH
968
A
HOH
972
8
HOH
HOH
969
A
HOH
973
8
HOH
HOH
970
A
HOH
974
8
HOH
HOH
971
A
HOH
975
8
HOH
HOH
972
A
HOH
976
8
HOH
HOH
973
A
HOH
977
8
HOH
HOH
974
A
HOH
978
8
HOH
HOH
975
A
HOH
979
8
HOH
HOH
976
A
HOH
980
8
HOH
HOH
977
A
HOH
981
8
HOH
HOH
978
A
HOH
982
8
HOH
HOH
979
A
HOH
983
8
HOH
HOH
980
A
HOH
984
8
HOH
HOH
981
A
HOH
985
8
HOH
HOH
982
A
HOH
986
8
HOH
HOH
983
A
HOH
987
8
HOH
HOH
984
A
HOH
988
8
HOH
HOH
985
A
HOH
989
8
HOH
HOH
986
A
HOH
990
8
HOH
HOH
987
A
HOH
991
8
HOH
HOH
988
A
HOH
992
8
HOH
HOH
989
A
HOH
993
8
HOH
HOH
990
A
HOH
994
8
HOH
HOH
991
A
HOH
995
8
HOH
HOH
992
A
HOH
996
8
HOH
HOH
993
A
HOH
997
8
HOH
HOH
994
A
HOH
998
8
HOH
HOH
995
A
HOH
999
8
HOH
HOH
996
A
HOH
1000
8
HOH
HOH
997
A
HOH
1001
8
HOH
HOH
998
A
HOH
1002
8
HOH
HOH
999
A
HOH
1003
8
HOH
HOH
1000
A
HOH
1004
8
HOH
HOH
1001
A
HOH
1005
8
HOH
HOH
1002
A
HOH
1006
8
HOH
HOH
1003
A
HOH
1007
8
HOH
HOH
1004
A
HOH
1008
8
HOH
HOH
1005
A
HOH
1009
8
HOH
HOH
1006
A
HOH
1010
8
HOH
HOH
1007
A
HOH
1011
8
HOH
HOH
1008
A
HOH
1012
8
HOH
HOH
1009
A
HOH
1013
8
HOH
HOH
1010
A
HOH
1014
8
HOH
HOH
1011
A
HOH
102
8
HOH
HOH
1012
A
HOH
1
8
HOH
HOH
1013
A
HOH
954
8
HOH
HOH
201
T
HOH
962
8
HOH
HOH
202
T
HOH
1015
8
HOH
HOH
203
T
HOH
201
8
HOH
HOH
204
T
HOH
202
8
HOH
HOH
205
T
HOH
203
8
HOH
HOH
206
T
HOH
204
8
HOH
HOH
207
T
HOH
205
8
HOH
HOH
208
T
HOH
206
8
HOH
HOH
209
T
HOH
207
8
HOH
HOH
210
T
HOH
208
8
HOH
HOH
211
T
HOH
209
8
HOH
HOH
212
T
HOH
101
8
HOH
HOH
101
P
HOH
103
8
HOH
HOH
102
P
HOH
104
8
HOH
HOH
103
P
HOH
105
8
HOH
HOH
104
P
HOH
106
8
HOH
HOH
105
P
HOH
107
8
HOH
HOH
106
P
HOH
108
8
HOH
HOH
107
P
HOH
109
8
HOH
HOH
108
P
HOH
110
8
HOH
HOH
109
P
MET
1
n
1
MET
1
A
ILE
2
n
2
ILE
2
A
LEU
3
n
3
LEU
3
A
ASP
4
n
4
ASP
4
A
THR
5
n
5
THR
5
A
ASP
6
n
6
ASP
6
A
TYR
7
n
7
TYR
7
A
ILE
8
n
8
ILE
8
A
THR
9
n
9
THR
9
A
GLU
10
n
10
GLU
10
A
ASN
11
n
11
ASN
11
A
GLY
12
n
12
GLY
12
A
LYS
13
n
13
LYS
13
A
PRO
14
n
14
PRO
14
A
VAL
15
n
15
VAL
15
A
ILE
16
n
16
ILE
16
A
ARG
17
n
17
ARG
17
A
VAL
18
n
18
VAL
18
A
PHE
19
n
19
PHE
19
A
LYS
20
n
20
LYS
20
A
LYS
21
n
21
LYS
21
A
GLU
22
n
22
GLU
22
A
ASN
23
n
23
ASN
23
A
GLY
24
n
24
GLY
24
A
GLU
25
n
25
GLU
25
A
PHE
26
n
26
PHE
26
A
LYS
27
n
27
LYS
27
A
ILE
28
n
28
ILE
28
A
GLU
29
n
29
GLU
29
A
TYR
30
n
30
TYR
30
A
ASP
31
n
31
ASP
31
A
ARG
32
n
32
ARG
32
A
THR
33
n
33
THR
33
A
PHE
34
n
34
PHE
34
A
GLU
35
n
35
GLU
35
A
PRO
36
n
36
PRO
36
A
TYR
37
n
37
TYR
37
A
PHE
38
n
38
PHE
38
A
TYR
39
n
39
TYR
39
A
ALA
40
n
40
ALA
40
A
LEU
41
n
41
LEU
41
A
LEU
42
n
42
LEU
42
A
LYS
43
n
43
LYS
43
A
ASP
44
n
44
ASP
44
A
ASP
45
n
45
ASP
45
A
SER
46
n
46
SER
46
A
ALA
47
n
47
ALA
47
A
ILE
48
n
48
ILE
48
A
GLU
49
n
49
GLU
49
A
ASP
50
n
50
ASP
50
A
VAL
51
n
51
VAL
51
A
LYS
52
n
52
LYS
52
A
LYS
53
n
53
LYS
53
A
VAL
54
n
54
VAL
54
A
THR
55
n
55
THR
55
A
ALA
56
n
56
ALA
56
A
LYS
57
n
57
LYS
57
A
ARG
58
n
58
ARG
58
A
HIS
59
n
59
HIS
59
A
GLY
60
n
60
GLY
60
A
THR
61
n
61
THR
61
A
VAL
62
n
62
VAL
62
A
VAL
63
n
63
VAL
63
A
LYS
64
n
64
LYS
64
A
VAL
65
n
65
VAL
65
A
LYS
66
n
66
LYS
66
A
ARG
67
n
67
ARG
67
A
ALA
68
n
68
ALA
68
A
GLU
69
n
69
GLU
69
A
LYS
70
n
70
LYS
70
A
VAL
71
n
71
VAL
71
A
GLN
72
n
72
GLN
72
A
LYS
73
n
73
LYS
73
A
LYS
74
n
74
LYS
74
A
PHE
75
n
75
PHE
75
A
LEU
76
n
76
LEU
76
A
GLY
77
n
77
GLY
77
A
ARG
78
n
78
ARG
78
A
PRO
79
n
79
PRO
79
A
ILE
80
n
80
ILE
80
A
GLU
81
n
81
GLU
81
A
VAL
82
n
82
VAL
82
A
TRP
83
n
83
TRP
83
A
LYS
84
n
84
LYS
84
A
LEU
85
n
85
LEU
85
A
TYR
86
n
86
TYR
86
A
PHE
87
n
87
PHE
87
A
ASN
88
n
88
ASN
88
A
HIS
89
n
89
HIS
89
A
PRO
90
n
90
PRO
90
A
GLN
91
n
91
GLN
91
A
ASP
92
n
92
ASP
92
A
VAL
93
n
93
VAL
93
A
PRO
94
n
94
PRO
94
A
ALA
95
n
95
ALA
95
A
ILE
96
n
96
ILE
96
A
ARG
97
n
97
ARG
97
A
ASP
98
n
98
ASP
98
A
ARG
99
n
99
ARG
99
A
ILE
100
n
100
ILE
100
A
ARG
101
n
101
ARG
101
A
ALA
102
n
102
ALA
102
A
HIS
103
n
103
HIS
103
A
PRO
104
n
104
PRO
104
A
ALA
105
n
105
ALA
105
A
VAL
106
n
106
VAL
106
A
VAL
107
n
107
VAL
107
A
ASP
108
n
108
ASP
108
A
ILE
109
n
109
ILE
109
A
TYR
110
n
110
TYR
110
A
GLU
111
n
111
GLU
111
A
TYR
112
n
112
TYR
112
A
ASP
113
n
113
ASP
113
A
ILE
114
n
114
ILE
114
A
PRO
115
n
115
PRO
115
A
PHE
116
n
116
PHE
116
A
ALA
117
n
117
ALA
117
A
LYS
118
n
118
LYS
118
A
ARG
119
n
119
ARG
119
A
TYR
120
n
120
TYR
120
A
LEU
121
n
121
LEU
121
A
ILE
122
n
122
ILE
122
A
ASP
123
n
123
ASP
123
A
LYS
124
n
124
LYS
124
A
GLY
125
n
125
GLY
125
A
LEU
126
n
126
LEU
126
A
ILE
127
n
127
ILE
127
A
PRO
128
n
128
PRO
128
A
MET
129
n
129
MET
129
A
GLU
130
n
130
GLU
130
A
GLY
131
n
131
GLY
131
A
ASP
132
n
132
ASP
132
A
GLU
133
n
133
GLU
133
A
GLU
134
n
134
GLU
134
A
LEU
135
n
135
LEU
135
A
THR
136
n
136
THR
136
A
MET
137
n
137
MET
137
A
LEU
138
n
138
LEU
138
A
ALA
139
n
139
ALA
139
A
PHE
140
n
140
PHE
140
A
ALA
141
n
141
ALA
141
A
ILE
142
n
142
ILE
142
A
ALA
143
n
143
ALA
143
A
THR
144
n
144
THR
144
A
LEU
145
n
145
LEU
145
A
TYR
146
n
146
TYR
146
A
HIS
147
n
147
HIS
147
A
GLU
148
n
148
GLU
148
A
GLY
149
n
149
GLY
149
A
GLU
150
n
150
GLU
150
A
GLU
151
n
151
GLU
151
A
PHE
152
n
152
PHE
152
A
GLY
153
n
153
GLY
153
A
THR
154
n
154
THR
154
A
GLY
155
n
155
GLY
155
A
PRO
156
n
156
PRO
156
A
ILE
157
n
157
ILE
157
A
LEU
158
n
158
LEU
158
A
MET
159
n
159
MET
159
A
ILE
160
n
160
ILE
160
A
SER
161
n
161
SER
161
A
TYR
162
n
162
TYR
162
A
ALA
163
n
163
ALA
163
A
ASP
164
n
164
ASP
164
A
GLY
165
n
165
GLY
165
A
SER
166
n
166
SER
166
A
GLU
167
n
167
GLU
167
A
ALA
168
n
168
ALA
168
A
ARG
169
n
169
ARG
169
A
VAL
170
n
170
VAL
170
A
ILE
171
n
171
ILE
171
A
THR
172
n
172
THR
172
A
TRP
173
n
173
TRP
173
A
LYS
174
n
174
LYS
174
A
LYS
175
n
175
LYS
175
A
ILE
176
n
176
ILE
176
A
ASP
177
n
177
ASP
177
A
LEU
178
n
178
LEU
178
A
PRO
179
n
179
PRO
179
A
TYR
180
n
180
TYR
180
A
VAL
181
n
181
VAL
181
A
ASP
182
n
182
ASP
182
A
VAL
183
n
183
VAL
183
A
VAL
184
n
184
VAL
184
A
SER
185
n
185
SER
185
A
THR
186
n
186
THR
186
A
GLU
187
n
187
GLU
187
A
LYS
188
n
188
LYS
188
A
GLU
189
n
189
GLU
189
A
MET
190
n
190
MET
190
A
ILE
191
n
191
ILE
191
A
LYS
192
n
192
LYS
192
A
ARG
193
n
193
ARG
193
A
PHE
194
n
194
PHE
194
A
LEU
195
n
195
LEU
195
A
ARG
196
n
196
ARG
196
A
VAL
197
n
197
VAL
197
A
VAL
198
n
198
VAL
198
A
ARG
199
n
199
ARG
199
A
GLU
200
n
200
GLU
200
A
LYS
201
n
201
LYS
201
A
ASP
202
n
202
ASP
202
A
PRO
203
n
203
PRO
203
A
ASP
204
n
204
ASP
204
A
VAL
205
n
205
VAL
205
A
LEU
206
n
206
LEU
206
A
ILE
207
n
207
ILE
207
A
THR
208
n
208
THR
208
A
TYR
209
n
209
TYR
209
A
ASN
210
n
210
ASN
210
A
GLY
211
n
211
GLY
211
A
ASP
212
n
212
ASP
212
A
ASN
213
n
213
ASN
213
A
PHE
214
n
214
PHE
214
A
ASP
215
n
215
ASP
215
A
PHE
216
n
216
PHE
216
A
ALA
217
n
217
ALA
217
A
TYR
218
n
218
TYR
218
A
LEU
219
n
219
LEU
219
A
LYS
220
n
220
LYS
220
A
LYS
221
n
221
LYS
221
A
ARG
222
n
222
ARG
222
A
CYS
223
n
223
CYS
223
A
GLU
224
n
224
GLU
224
A
GLU
225
n
225
GLU
225
A
LEU
226
n
226
LEU
226
A
GLY
227
n
227
GLY
227
A
ILE
228
n
228
ILE
228
A
LYS
229
n
229
LYS
229
A
PHE
230
n
230
PHE
230
A
THR
231
n
231
THR
231
A
LEU
232
n
232
LEU
232
A
GLY
233
n
233
GLY
233
A
ARG
234
n
234
ARG
234
A
ASP
235
n
235
ASP
235
A
GLY
236
n
236
GLY
236
A
SER
237
n
237
SER
237
A
GLU
238
n
238
GLU
238
A
PRO
239
n
239
PRO
239
A
LYS
240
n
240
LYS
240
A
ILE
241
n
241
ILE
241
A
GLN
242
n
242
GLN
242
A
ARG
243
n
243
ARG
243
A
MET
244
n
244
MET
244
A
GLY
245
n
245
GLY
245
A
ASP
246
n
246
ASP
246
A
ARG
247
n
247
ARG
247
A
PHE
248
n
248
PHE
248
A
ALA
249
n
249
ALA
249
A
VAL
250
n
250
VAL
250
A
GLU
251
n
251
GLU
251
A
VAL
252
n
252
VAL
252
A
LYS
253
n
253
LYS
253
A
GLY
254
n
254
GLY
254
A
ARG
255
n
255
ARG
255
A
ILE
256
n
256
ILE
256
A
HIS
257
n
257
HIS
257
A
PHE
258
n
258
PHE
258
A
ASP
259
n
259
ASP
259
A
LEU
260
n
260
LEU
260
A
TYR
261
n
261
TYR
261
A
PRO
262
n
262
PRO
262
A
VAL
263
n
263
VAL
263
A
ILE
264
n
264
ILE
264
A
ARG
265
n
265
ARG
265
A
ARG
266
n
266
ARG
266
A
THR
267
n
267
THR
267
A
ILE
268
n
268
ILE
268
A
ASN
269
n
269
ASN
269
A
LEU
270
n
270
LEU
270
A
PRO
271
n
271
PRO
271
A
THR
272
n
272
THR
272
A
TYR
273
n
273
TYR
273
A
THR
274
n
274
THR
274
A
LEU
275
n
275
LEU
275
A
GLU
276
n
276
GLU
276
A
ALA
277
n
277
ALA
277
A
VAL
278
n
278
VAL
278
A
TYR
279
n
279
TYR
279
A
GLU
280
n
280
GLU
280
A
ALA
281
n
281
ALA
281
A
VAL
282
n
282
VAL
282
A
PHE
283
n
283
PHE
283
A
GLY
284
n
284
GLY
284
A
LYS
285
n
285
LYS
285
A
PRO
286
n
286
PRO
286
A
LYS
287
n
287
LYS
287
A
GLU
288
n
288
GLU
288
A
LYS
289
n
289
LYS
289
A
VAL
290
n
290
VAL
290
A
TYR
291
n
291
TYR
291
A
ALA
292
n
292
ALA
292
A
GLU
293
n
293
GLU
293
A
GLU
294
n
294
GLU
294
A
ILE
295
n
295
ILE
295
A
ALA
296
n
296
ALA
296
A
GLN
297
n
297
GLN
297
A
ALA
298
n
298
ALA
298
A
TRP
299
n
299
TRP
299
A
GLU
300
n
300
GLU
300
A
SER
301
n
301
SER
301
A
GLY
302
n
302
GLY
302
A
GLU
303
n
303
GLU
303
A
GLY
304
n
304
GLY
304
A
LEU
305
n
305
LEU
305
A
GLU
306
n
306
GLU
306
A
ARG
307
n
307
ARG
307
A
VAL
308
n
308
VAL
308
A
ALA
309
n
309
ALA
309
A
ARG
310
n
310
ARG
310
A
TYR
311
n
311
TYR
311
A
SER
312
n
312
SER
312
A
MET
313
n
313
MET
313
A
GLU
314
n
314
GLU
314
A
ASP
315
n
315
ASP
315
A
ALA
316
n
316
ALA
316
A
LYS
317
n
317
LYS
317
A
VAL
318
n
318
VAL
318
A
THR
319
n
319
THR
319
A
TYR
320
n
320
TYR
320
A
GLU
321
n
321
GLU
321
A
LEU
322
n
322
LEU
322
A
GLY
323
n
323
GLY
323
A
ARG
324
n
324
ARG
324
A
GLU
325
n
325
GLU
325
A
PHE
326
n
326
PHE
326
A
PHE
327
n
327
PHE
327
A
PRO
328
n
328
PRO
328
A
MET
329
n
329
MET
329
A
GLU
330
n
330
GLU
330
A
ALA
331
n
331
ALA
331
A
GLN
332
n
332
GLN
332
A
LEU
333
n
333
LEU
333
A
SER
334
n
334
SER
334
A
ARG
335
n
335
ARG
335
A
LEU
336
n
336
LEU
336
A
ILE
337
n
337
ILE
337
A
GLY
338
n
338
GLY
338
A
GLN
339
n
339
GLN
339
A
SER
340
n
340
SER
340
A
LEU
341
n
341
LEU
341
A
TRP
342
n
342
TRP
342
A
ASP
343
n
343
ASP
343
A
VAL
344
n
344
VAL
344
A
SER
345
n
345
SER
345
A
ARG
346
n
346
ARG
346
A
SER
347
n
347
SER
347
A
SER
348
n
348
SER
348
A
THR
349
n
349
THR
349
A
GLY
350
n
350
GLY
350
A
ASN
351
n
351
ASN
351
A
LEU
352
n
352
LEU
352
A
VAL
353
n
353
VAL
353
A
GLU
354
n
354
GLU
354
A
TRP
355
n
355
TRP
355
A
PHE
356
n
356
PHE
356
A
LEU
357
n
357
LEU
357
A
LEU
358
n
358
LEU
358
A
ARG
359
n
359
ARG
359
A
LYS
360
n
360
LYS
360
A
ALA
361
n
361
ALA
361
A
TYR
362
n
362
TYR
362
A
LYS
363
n
363
LYS
363
A
ARG
364
n
364
ARG
364
A
ASN
365
n
365
ASN
365
A
GLU
366
n
366
GLU
366
A
LEU
367
n
367
LEU
367
A
ALA
368
n
368
ALA
368
A
PRO
369
n
369
PRO
369
A
ASN
370
n
370
ASN
370
A
LYS
371
n
371
LYS
371
A
PRO
372
n
372
PRO
372
A
ASP
373
n
373
ASP
373
A
GLU
374
n
374
GLU
374
A
ARG
375
n
375
ARG
375
A
GLU
376
n
376
GLU
376
A
LEU
377
n
377
LEU
377
A
ALA
378
n
378
ALA
378
A
ARG
379
n
379
ARG
379
A
ARG
380
n
380
ARG
380
A
ARG
381
n
381
ARG
381
A
GLY
382
n
382
GLY
382
A
GLY
383
n
383
GLY
383
A
TYR
384
n
384
TYR
384
A
ALA
385
n
385
ALA
385
A
GLY
386
n
386
GLY
386
A
GLY
387
n
387
GLY
387
A
TYR
388
n
388
TYR
388
A
VAL
389
n
389
VAL
389
A
LYS
390
n
390
LYS
390
A
GLU
391
n
391
GLU
391
A
PRO
392
n
392
PRO
392
A
GLU
393
n
393
GLU
393
A
ARG
394
n
394
ARG
394
A
GLY
395
n
395
GLY
395
A
LEU
396
n
396
LEU
396
A
TRP
397
n
397
TRP
397
A
ASP
398
n
398
ASP
398
A
ASN
399
n
399
ASN
399
A
ILE
400
n
400
ILE
400
A
VAL
401
n
401
VAL
401
A
TYR
402
n
402
TYR
402
A
LEU
403
n
403
LEU
403
A
ASP
404
n
404
ASP
404
A
PHE
405
n
405
PHE
405
A
ARG
406
n
406
ARG
406
A
SER
407
n
407
SER
407
A
LEU
408
n
408
LEU
408
A
TYR
409
n
409
TYR
409
A
PRO
410
n
410
PRO
410
A
SER
411
n
411
SER
411
A
ILE
412
n
412
ILE
412
A
ILE
413
n
413
ILE
413
A
ILE
414
n
414
ILE
414
A
THR
415
n
415
THR
415
A
HIS
416
n
416
HIS
416
A
ASN
417
n
417
ASN
417
A
VAL
418
n
418
VAL
418
A
SER
419
n
419
SER
419
A
PRO
420
n
420
PRO
420
A
ASP
421
n
421
ASP
421
A
THR
422
n
422
THR
422
A
LEU
423
n
423
LEU
423
A
ASN
424
n
424
ASN
424
A
ARG
425
n
425
ARG
425
A
GLU
426
n
426
GLU
426
A
GLY
427
n
427
GLY
427
A
CYS
428
n
428
CYS
428
A
LYS
429
n
429
LYS
429
A
GLU
430
n
430
GLU
430
A
TYR
431
n
431
TYR
431
A
ASP
432
n
432
ASP
432
A
VAL
433
n
433
VAL
433
A
ALA
434
n
434
ALA
434
A
PRO
435
n
435
PRO
435
A
GLU
436
n
436
GLU
436
A
VAL
437
n
437
VAL
437
A
GLY
438
n
438
GLY
438
A
HIS
439
n
439
HIS
439
A
LYS
440
n
440
LYS
440
A
PHE
441
n
441
PHE
441
A
CYS
442
n
442
CYS
442
A
LYS
443
n
443
LYS
443
A
ASP
444
n
444
ASP
444
A
PHE
445
n
445
PHE
445
A
PRO
446
n
446
PRO
446
A
GLY
447
n
447
GLY
447
A
PHE
448
n
448
PHE
448
A
ILE
449
n
449
ILE
449
A
PRO
450
n
450
PRO
450
A
SER
451
n
451
SER
451
A
LEU
452
n
452
LEU
452
A
LEU
453
n
453
LEU
453
A
GLY
454
n
454
GLY
454
A
ASP
455
n
455
ASP
455
A
LEU
456
n
456
LEU
456
A
LEU
457
n
457
LEU
457
A
GLU
458
n
458
GLU
458
A
GLU
459
n
459
GLU
459
A
ARG
460
n
460
ARG
460
A
GLN
461
n
461
GLN
461
A
LYS
462
n
462
LYS
462
A
ILE
463
n
463
ILE
463
A
LYS
464
n
464
LYS
464
A
ARG
465
n
465
ARG
465
A
LYS
466
n
466
LYS
466
A
MET
467
n
467
MET
467
A
LYS
468
n
468
LYS
468
A
ALA
469
n
469
ALA
469
A
THR
470
n
470
THR
470
A
VAL
471
n
471
VAL
471
A
ASP
472
n
472
ASP
472
A
PRO
473
n
473
PRO
473
A
LEU
474
n
474
LEU
474
A
GLU
475
n
475
GLU
475
A
LYS
476
n
476
LYS
476
A
LYS
477
n
477
LYS
477
A
LEU
478
n
478
LEU
478
A
LEU
479
n
479
LEU
479
A
ASP
480
n
480
ASP
480
A
TYR
481
n
481
TYR
481
A
ARG
482
n
482
ARG
482
A
GLN
483
n
483
GLN
483
A
ARG
484
n
484
ARG
484
A
ALA
485
n
485
ALA
485
A
ILE
486
n
486
ILE
486
A
LYS
487
n
487
LYS
487
A
ILE
488
n
488
ILE
488
A
LEU
489
n
489
LEU
489
A
ALA
490
n
490
ALA
490
A
ASN
491
n
491
ASN
491
A
SER
492
n
492
SER
492
A
PHE
493
n
493
PHE
493
A
TYR
494
n
494
TYR
494
A
GLY
495
n
495
GLY
495
A
TYR
496
n
496
TYR
496
A
TYR
497
n
497
TYR
497
A
GLY
498
n
498
GLY
498
A
TYR
499
n
499
TYR
499
A
ALA
500
n
500
ALA
500
A
LYS
501
n
501
LYS
501
A
ALA
502
n
502
ALA
502
A
ARG
503
n
503
ARG
503
A
TRP
504
n
504
TRP
504
A
TYR
505
n
505
TYR
505
A
CYS
506
n
506
CYS
506
A
LYS
507
n
507
LYS
507
A
GLU
508
n
508
GLU
508
A
CYS
509
n
509
CYS
509
A
ALA
510
n
510
ALA
510
A
GLU
511
n
511
GLU
511
A
SER
512
n
512
SER
512
A
VAL
513
n
513
VAL
513
A
THR
514
n
514
THR
514
A
ALA
515
n
515
ALA
515
A
TRP
516
n
516
TRP
516
A
GLY
517
n
517
GLY
517
A
ARG
518
n
518
ARG
518
A
GLU
519
n
519
GLU
519
A
TYR
520
n
520
TYR
520
A
ILE
521
n
521
ILE
521
A
GLU
522
n
522
GLU
522
A
MET
523
n
523
MET
523
A
VAL
524
n
524
VAL
524
A
ILE
525
n
525
ILE
525
A
ARG
526
n
526
ARG
526
A
GLU
527
n
527
GLU
527
A
LEU
528
n
528
LEU
528
A
GLU
529
n
529
GLU
529
A
GLU
530
n
530
GLU
530
A
LYS
531
n
531
LYS
531
A
PHE
532
n
532
PHE
532
A
GLY
533
n
533
GLY
533
A
PHE
534
n
534
PHE
534
A
LYS
535
n
535
LYS
535
A
VAL
536
n
536
VAL
536
A
LEU
537
n
537
LEU
537
A
TYR
538
n
538
TYR
538
A
ALA
539
n
539
ALA
539
A
ASP
540
n
540
ASP
540
A
THR
541
n
541
THR
541
A
ASP
542
n
542
ASP
542
A
GLY
543
n
543
GLY
543
A
LEU
544
n
544
LEU
544
A
HIS
545
n
545
HIS
545
A
ALA
546
n
546
ALA
546
A
THR
547
n
547
THR
547
A
ILE
548
n
548
ILE
548
A
PRO
549
n
549
PRO
549
A
GLY
550
n
550
GLY
550
A
ALA
551
n
551
ALA
551
A
ASP
552
n
552
ASP
552
A
ALA
553
n
553
ALA
553
A
GLU
554
n
554
GLU
554
A
THR
555
n
555
THR
555
A
VAL
556
n
556
VAL
556
A
LYS
557
n
557
LYS
557
A
LYS
558
n
558
LYS
558
A
LYS
559
n
559
LYS
559
A
ALA
560
n
560
ALA
560
A
LYS
561
n
561
LYS
561
A
GLU
562
n
562
GLU
562
A
PHE
563
n
563
PHE
563
A
LEU
564
n
564
LEU
564
A
LYS
565
n
565
LYS
565
A
TYR
566
n
566
TYR
566
A
ILE
567
n
567
ILE
567
A
ASN
568
n
568
ASN
568
A
PRO
569
n
569
PRO
569
A
LYS
570
n
570
LYS
570
A
LEU
571
n
571
LEU
571
A
PRO
572
n
572
PRO
572
A
GLY
573
n
573
GLY
573
A
LEU
574
n
574
LEU
574
A
LEU
575
n
575
LEU
575
A
GLU
576
n
576
GLU
576
A
LEU
577
n
577
LEU
577
A
GLU
578
n
578
GLU
578
A
TYR
579
n
579
TYR
579
A
GLU
580
n
580
GLU
580
A
GLY
581
n
581
GLY
581
A
PHE
582
n
582
PHE
582
A
TYR
583
n
583
TYR
583
A
VAL
584
n
584
VAL
584
A
ARG
585
n
585
ARG
585
A
GLY
586
n
586
GLY
586
A
PHE
587
n
587
PHE
587
A
PHE
588
n
588
PHE
588
A
VAL
589
n
589
VAL
589
A
THR
590
n
590
THR
590
A
LYS
591
n
591
LYS
591
A
LYS
592
n
592
LYS
592
A
LYS
593
n
593
LYS
593
A
TYR
594
n
594
TYR
594
A
ALA
595
n
595
ALA
595
A
VAL
596
n
596
VAL
596
A
ILE
597
n
597
ILE
597
A
ASP
598
n
598
ASP
598
A
GLU
599
n
599
GLU
599
A
GLU
600
n
600
GLU
600
A
GLY
601
n
601
GLY
601
A
LYS
602
n
602
LYS
602
A
ILE
603
n
603
ILE
603
A
THR
604
n
604
THR
604
A
THR
605
n
605
THR
605
A
ARG
606
n
606
ARG
606
A
GLY
607
n
607
GLY
607
A
LEU
608
n
608
LEU
608
A
GLU
609
n
609
GLU
609
A
ILE
610
n
610
ILE
610
A
VAL
611
n
611
VAL
611
A
ARG
612
n
612
ARG
612
A
ARG
613
n
613
ARG
613
A
ASP
614
n
614
ASP
614
A
TRP
615
n
615
TRP
615
A
SER
616
n
616
SER
616
A
GLU
617
n
617
GLU
617
A
ILE
618
n
618
ILE
618
A
ALA
619
n
619
ALA
619
A
LYS
620
n
620
LYS
620
A
GLU
621
n
621
GLU
621
A
THR
622
n
622
THR
622
A
GLN
623
n
623
GLN
623
A
ALA
624
n
624
ALA
624
A
ARG
625
n
625
ARG
625
A
VAL
626
n
626
VAL
626
A
LEU
627
n
627
LEU
627
A
GLU
628
n
628
GLU
628
A
ALA
629
n
629
ALA
629
A
ILE
630
n
630
ILE
630
A
LEU
631
n
631
LEU
631
A
LYS
632
n
632
LYS
632
A
HIS
633
n
633
HIS
633
A
GLY
634
n
634
GLY
634
A
ASP
635
n
635
ASP
635
A
VAL
636
n
636
VAL
636
A
GLU
637
n
637
GLU
637
A
GLU
638
n
638
GLU
638
A
ALA
639
n
639
ALA
639
A
VAL
640
n
640
VAL
640
A
ARG
641
n
641
ARG
641
A
ILE
642
n
642
ILE
642
A
VAL
643
n
643
VAL
643
A
LYS
644
n
644
LYS
644
A
GLU
645
n
645
GLU
645
A
VAL
646
n
646
VAL
646
A
THR
647
n
647
THR
647
A
GLU
648
n
648
GLU
648
A
LYS
649
n
649
LYS
649
A
LEU
650
n
650
LEU
650
A
SER
651
n
651
SER
651
A
LYS
652
n
652
LYS
652
A
TYR
653
n
653
TYR
653
A
GLU
654
n
654
GLU
654
A
VAL
655
n
655
VAL
655
A
PRO
656
n
656
PRO
656
A
PRO
657
n
657
PRO
657
A
GLU
658
n
658
GLU
658
A
LYS
659
n
659
LYS
659
A
LEU
660
n
660
LEU
660
A
VAL
661
n
661
VAL
661
A
ILE
662
n
662
ILE
662
A
HIS
663
n
663
HIS
663
A
GLU
664
n
664
GLU
664
A
GLN
665
n
665
GLN
665
A
ILE
666
n
666
ILE
666
A
THR
667
n
667
THR
667
A
ARG
668
n
668
ARG
668
A
ASP
669
n
669
ASP
669
A
LEU
670
n
670
LEU
670
A
ARG
671
n
671
ARG
671
A
ASP
672
n
672
ASP
672
A
TYR
673
n
673
TYR
673
A
LYS
674
n
674
LYS
674
A
ALA
675
n
675
ALA
675
A
THR
676
n
676
THR
676
A
GLY
677
n
677
GLY
677
A
PRO
678
n
678
PRO
678
A
HIS
679
n
679
HIS
679
A
VAL
680
n
680
VAL
680
A
ALA
681
n
681
ALA
681
A
VAL
682
n
682
VAL
682
A
ALA
683
n
683
ALA
683
A
LYS
684
n
684
LYS
684
A
ARG
685
n
685
ARG
685
A
LEU
686
n
686
LEU
686
A
ALA
687
n
687
ALA
687
A
ALA
688
n
688
ALA
688
A
ARG
689
n
689
ARG
689
A
GLY
690
n
690
GLY
690
A
VAL
691
n
691
VAL
691
A
LYS
692
n
692
LYS
692
A
ILE
693
n
693
ILE
693
A
ARG
694
n
694
ARG
694
A
PRO
695
n
695
PRO
695
A
GLY
696
n
696
GLY
696
A
THR
697
n
697
THR
697
A
VAL
698
n
698
VAL
698
A
ILE
699
n
699
ILE
699
A
SER
700
n
700
SER
700
A
TYR
701
n
701
TYR
701
A
ILE
702
n
702
ILE
702
A
VAL
703
n
703
VAL
703
A
LEU
704
n
704
LEU
704
A
LYS
705
n
705
LYS
705
A
GLY
706
n
706
GLY
706
A
SER
707
n
707
SER
707
A
GLY
708
n
708
GLY
708
A
ARG
709
n
709
ARG
709
A
ILE
710
n
710
ILE
710
A
GLY
711
n
711
GLY
711
A
ASP
712
n
712
ASP
712
A
ARG
713
n
713
ARG
713
A
ALA
714
n
714
ALA
714
A
ILE
715
n
715
ILE
715
A
PRO
716
n
716
PRO
716
A
ALA
717
n
717
ALA
717
A
ASP
718
n
718
ASP
718
A
GLU
719
n
719
GLU
719
A
PHE
720
n
720
PHE
720
A
ASP
721
n
721
ASP
721
A
PRO
722
n
722
PRO
722
A
THR
723
n
723
THR
723
A
LYS
724
n
724
LYS
724
A
HIS
725
n
725
HIS
725
A
ARG
726
n
726
ARG
726
A
TYR
727
n
727
TYR
727
A
ASP
728
n
728
ASP
728
A
ALA
729
n
729
ALA
729
A
GLU
730
n
730
GLU
730
A
TYR
731
n
731
TYR
731
A
TYR
732
n
732
TYR
732
A
ILE
733
n
733
ILE
733
A
GLU
734
n
734
GLU
734
A
ASN
735
n
735
ASN
735
A
GLN
736
n
736
GLN
736
A
VAL
737
n
737
VAL
737
A
LEU
738
n
738
LEU
738
A
PRO
739
n
739
PRO
739
A
ALA
740
n
740
ALA
740
A
VAL
741
n
741
VAL
741
A
GLU
742
n
742
GLU
742
A
ARG
743
n
743
ARG
743
A
ILE
744
n
744
ILE
744
A
LEU
745
n
745
LEU
745
A
LYS
746
n
746
LYS
746
A
ALA
747
n
747
ALA
747
A
PHE
748
n
748
PHE
748
A
GLY
749
n
749
GLY
749
A
TYR
750
n
750
TYR
750
A
ARG
751
n
751
ARG
751
A
LYS
752
n
752
LYS
752
A
GLU
753
n
753
GLU
753
A
ASP
754
n
754
ASP
754
A
LEU
755
n
755
LEU
755
A
ARG
756
n
756
ARG
756
A
TYR
757
n
757
TYR
757
A
GLN
758
n
758
GLN
758
A
LYS
759
n
759
LYS
759
A
n
760
760
A
n
761
761
A
n
762
762
A
n
763
763
A
n
764
764
A
n
765
765
A
n
766
766
A
n
767
767
A
n
768
768
A
n
769
769
A
n
770
770
A
n
771
771
A
n
772
772
A
n
773
773
A
n
774
774
A
n
775
775
A
DA
1
n
1
DA
1
T
DA
2
n
2
DA
2
T
DA
3
n
3
DA
3
T
DG
4
n
4
DG
4
T
DG
5
n
5
DG
5
T
DC
6
n
6
DC
6
T
DG
7
n
7
DG
7
T
DC
8
n
8
DC
8
T
DA
9
n
9
DA
9
T
DG
10
n
10
DG
10
T
DT
11
n
11
DT
11
T
DT
12
n
12
DT
12
T
DC
13
n
13
DC
13
T
DG
14
n
14
DG
14
T
DC
15
n
15
DC
15
T
DG
16
n
16
DG
16
T
DC
1
n
1
DC
1
P
DG
2
n
2
DG
2
P
DC
3
n
3
DC
3
P
DG
4
n
4
DG
4
P
DA
5
n
5
DA
5
P
DA
6
n
6
DA
6
P
DC
7
n
7
DC
7
P
DT
8
n
8
DT
8
P
DG
9
n
9
DG
9
P
DC
10
n
10
DC
10
P
DG
11
n
11
DG
11
P
DOC
12
n
12
DOC
12
P
3.6473
-0.4046
-0.2006
1.3190
0.7105
3.8282
0.0206
0.9207
0.2682
-0.2214
-0.0341
0.1697
-0.0939
-0.1826
0.0241
0.2563
-0.0399
-0.0449
0.5963
0.1724
0.5609
refined
-32.1449
39.1512
-40.3743
X-RAY DIFFRACTION
5.4308
1.8564
-2.5032
2.4759
-1.4693
3.0655
-0.1672
0.4184
-0.3282
0.0020
0.1008
0.0816
0.0990
-0.6809
0.0509
0.2457
0.0160
-0.0002
0.5913
-0.1157
0.4435
refined
-51.4269
29.5190
-12.1571
X-RAY DIFFRACTION
2.0972
-0.2433
0.0822
0.9676
0.0311
0.6157
-0.0440
-0.0959
-0.1525
0.1334
-0.0222
-0.0982
0.0849
0.0728
0.0644
0.2627
-0.0190
-0.0220
0.3301
0.0295
0.3865
refined
-19.4288
24.2237
-14.4604
X-RAY DIFFRACTION
3.8353
0.4740
0.8128
1.7817
-0.0560
1.5605
0.1827
-0.4446
-0.9885
0.3309
0.0181
0.2633
0.2539
-0.2910
-0.1652
0.4583
0.0193
0.0860
0.5024
0.1176
0.8710
refined
-24.0868
2.8494
-1.5516
X-RAY DIFFRACTION
1.7468
0.3200
0.7472
0.3294
-0.2102
2.2371
0.1601
0.3177
-0.9959
-0.2326
-0.3728
0.3475
0.3333
-0.1484
0.2298
0.3951
-0.0482
0.0619
0.5226
-0.0743
1.0002
refined
-22.3139
4.9457
-16.3651
X-RAY DIFFRACTION
0.2381
-0.9648
0.2965
4.7352
-2.3681
2.1501
0.5751
0.3973
-1.6466
-0.5994
-0.2244
-0.7420
0.8849
-0.1494
-0.3725
0.6738
-0.0309
0.0153
0.5691
-0.1558
1.5930
refined
-22.7619
-3.1801
-17.2415
X-RAY DIFFRACTION
A
1
A
123
X-RAY DIFFRACTION
1
chain 'A' and (resseq 1:123)
A
124
A
255
X-RAY DIFFRACTION
2
chain 'A' and (resseq 124:255 )
A
256
A
553
X-RAY DIFFRACTION
3
chain 'A' and (resseq 256:553 )
A
554
A
758
X-RAY DIFFRACTION
4
chain 'A' and (resseq 554:758 )
T
1
T
16
X-RAY DIFFRACTION
5
chain 'T' and (resseq 1:16)
P
1
P
11
X-RAY DIFFRACTION
6
chain 'P' and (resseq 1:11)
author_and_software_defined_assembly
PISA
3
trimeric
8470
-158
36840
P
DOC
12
2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE
C
DOC
12
DC
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
LEU
3
A
N
LEU
3
A
O
PHE
19
A
O
PHE
19
A
N
LYS
20
A
N
LYS
20
A
O
LYS
27
A
O
LYS
27
A
N
LYS
73
A
N
LYS
73
A
O
ILE
80
A
O
ILE
80
A
O
LEU
85
A
O
LEU
85
A
N
PHE
38
A
N
PHE
38
A
N
LEU
41
A
N
LEU
41
A
O
ASP
108
A
O
ASP
108
A
N
ARG
58
A
N
ARG
58
A
O
THR
61
A
O
THR
61
A
O
ASP
182
A
O
ASP
182
A
N
VAL
170
A
N
VAL
170
A
O
ILE
171
A
O
ILE
171
A
N
ILE
160
A
N
ILE
160
A
O
ALA
163
A
O
ALA
163
A
N
ALA
139
A
N
ALA
139
A
N
LEU
138
A
N
LEU
138
A
O
ILE
207
A
O
ILE
207
A
N
LEU
206
A
N
LEU
206
A
O
ILE
256
A
O
ILE
256
A
N
LYS
240
A
N
LYS
240
A
O
GLU
251
A
O
GLU
251
A
N
LYS
390
A
N
LYS
390
A
O
ALA
539
A
O
ALA
539
A
N
LYS
535
A
N
LYS
535
A
O
THR
547
A
O
THR
547
A
O
LEU
544
A
O
LEU
544
A
N
LEU
403
A
N
LEU
403
A
N
ASP
404
A
N
ASP
404
A
O
GLU
578
A
O
GLU
578
A
N
ARG
585
A
N
ARG
585
A
O
ILE
597
A
O
ILE
597
A
N
VAL
596
A
N
VAL
596
A
O
THR
604
A
O
THR
604
A
N
ASP
432
A
N
ASP
432
A
O
PHE
441
A
O
PHE
441
A
N
GLU
664
A
N
GLU
664
A
O
ILE
699
A
O
ILE
699
A
N
ILE
702
A
N
ILE
702
A
O
ILE
715
A
O
ILE
715
1
A
THR
760
A
THR
760
1
Y
1
A
LYS
761
A
LYS
761
1
Y
1
A
GLN
762
A
GLN
762
1
Y
1
A
VAL
763
A
VAL
763
1
Y
1
A
GLY
764
A
GLY
764
1
Y
1
A
LEU
765
A
LEU
765
1
Y
1
A
GLY
766
A
GLY
766
1
Y
1
A
ALA
767
A
ALA
767
1
Y
1
A
TRP
768
A
TRP
768
1
Y
1
A
LEU
769
A
LEU
769
1
Y
1
A
LYS
770
A
LYS
770
1
Y
1
A
VAL
771
A
VAL
771
1
Y
1
A
LYS
772
A
LYS
772
1
Y
1
A
GLY
773
A
GLY
773
1
Y
1
A
LYS
774
A
LYS
774
1
Y
1
A
LYS
775
A
LYS
775
1
Y
1
6.27
0.30
108.30
114.57
T
T
T
O4'
C1'
N9
DA
DA
DA
2
2
2
A
A
A
N
1
4.42
0.30
108.30
112.72
T
T
T
O4'
C1'
N9
DG
DG
DG
4
4
4
N
1
2.24
0.30
108.30
110.54
T
T
T
O4'
C1'
N1
DC
DC
DC
6
6
6
N
1
2.43
0.30
108.30
110.73
T
T
T
O4'
C1'
N1
DC
DC
DC
8
8
8
N
1
-2.46
0.40
104.50
102.04
T
T
T
O4'
C4'
C3'
DG
DG
DG
10
10
10
N
1
2.65
0.30
108.30
110.95
T
T
T
O4'
C1'
N9
DG
DG
DG
10
10
10
N
1
3.63
0.30
108.30
111.93
T
T
T
O4'
C1'
N1
DC
DC
DC
13
13
13
N
1
3.45
0.30
108.30
111.75
P
P
P
O4'
C1'
N9
DG
DG
DG
9
9
9
N
1
-4.02
0.40
104.50
100.48
P
P
P
O4'
C4'
C3'
DC
DC
DC
10
10
10
N
1
-6.15
1.00
110.10
103.95
P
P
P
C1'
O4'
C4'
DC
DC
DC
10
10
10
N
1
-21.15
1.90
104.00
82.85
P
P
P
O3'
P
O5'
DG
DOC
DOC
11
12
12
Y
1
18.07
1.10
110.50
128.57
P
P
P
O3'
P
OP2
DG
DOC
DOC
11
12
12
Y
1
A
SER
301
-142.97
15.68
1
A
GLU
303
-72.50
-113.83
1
A
ASN
399
56.88
71.82
1
A
GLU
436
60.20
-59.84
1
A
TRP
504
-95.51
40.04
1
A
THR
541
69.83
-67.93
1
A
LYS
592
73.75
-7.67
1
A
GLN
736
-115.34
-74.52
180.400
61.7010
24.560
0.2383
0.1953
0.1976
2.280
48.712
2524
49586
49542
5.09
99.81
1.000
0.330
0.38
1
isotropic and tls
1.99
MOLECULAR REPLACEMENT
30.4700
0.90
1.11
1QHT
ML
FLAT BULK SOLVENT MODEL
2.280
48.712
134
7019
95
573
6217
0.008
7194
1.157
9849
17.718
2826
0.072
1035
0.005
1196
0.4217
0.3660
2.3239
126
2603
18
100.00
0.3854
0.3483
2.3713
133
2563
18
100.00
0.3983
0.3288
2.4228
143
2584
18
100.00
0.3581
0.3042
2.4792
136
2584
18
100.00
0.3761
0.2867
2.5412
143
2565
18
100.00
0.2782
0.2647
2.6099
133
2582
18
100.00
0.2884
0.2652
2.6867
161
2559
18
100.00
0.3217
0.2584
2.7734
135
2581
18
100.00
0.3340
0.2498
2.8725
117
2600
18
100.00
0.3251
0.2547
2.9875
151
2586
18
100.00
0.3240
0.2463
3.1235
144
2598
18
100.00
0.2928
0.2139
3.2881
135
2607
18
100.00
0.2531
0.1861
3.4941
134
2632
18
100.00
0.2346
0.1785
3.7637
138
2600
18
99.00
0.1632
0.1468
4.1423
139
2650
18
100.00
0.1538
0.1224
4.7413
140
2644
18
100.00
0.1971
0.1463
5.9718
152
2677
18
100.00
0.1824
0.1630
48.7235
164
2803
18
100.00
43.960
2.28
48.712
4K8X
49646
49600
0
-3
1
9.07
6.7
99.9
2.28
2.42
0.82
1
99.9
model building
PHENIX
refinement
PHENIX
(phenix.refine: dev_1345)
data reduction
XDS
data scaling
XDS
phasing
PHENIX
Binary complex of 9N DNA polymerase in the replicative state
1
N
N
2
N
N
3
N
N
4
N
N
4
N
N
4
N
N
4
N
N
4
N
N
4
N
N
4
N
N
4
N
N
4
N
N
5
N
N
4
N
N
4
N
N
6
N
N
7
N
N
8
N
N
8
N
N
8
N
N
A
ASP
44
A
ASP
44
HELX_P
A
SER
46
A
SER
46
5
1
3
A
ALA
47
A
ALA
47
HELX_P
A
LYS
53
A
LYS
53
1
2
7
A
GLN
91
A
GLN
91
HELX_P
A
HIS
103
A
HIS
103
1
3
13
A
PRO
115
A
PRO
115
HELX_P
A
LYS
124
A
LYS
124
1
4
10
A
THR
186
A
THR
186
HELX_P
A
ASP
202
A
ASP
202
1
5
17
A
PHE
214
A
PHE
214
HELX_P
A
LEU
226
A
LEU
226
1
6
13
A
LEU
260
A
LEU
260
HELX_P
A
ILE
268
A
ILE
268
1
7
9
A
THR
274
A
THR
274
HELX_P
A
GLY
284
A
GLY
284
1
8
11
A
TYR
291
A
TYR
291
HELX_P
A
GLY
302
A
GLY
302
1
9
12
A
GLY
304
A
GLY
304
HELX_P
A
GLY
338
A
GLY
338
1
10
35
A
SER
340
A
SER
340
HELX_P
A
SER
345
A
SER
345
1
11
6
A
SER
348
A
SER
348
HELX_P
A
ARG
364
A
ARG
364
1
12
17
A
ASP
373
A
ASP
373
HELX_P
A
ARG
379
A
ARG
379
1
13
7
A
SER
407
A
SER
407
HELX_P
A
HIS
416
A
HIS
416
1
14
10
A
GLY
447
A
GLY
447
HELX_P
A
THR
470
A
THR
470
1
15
24
A
ASP
472
A
ASP
472
HELX_P
A
ASN
491
A
ASN
491
1
16
20
A
SER
492
A
SER
492
HELX_P
A
GLY
498
A
GLY
498
1
17
7
A
CYS
506
A
CYS
506
HELX_P
A
LYS
531
A
LYS
531
1
18
26
A
ASP
552
A
ASP
552
HELX_P
A
ASN
568
A
ASN
568
1
19
17
A
PRO
569
A
PRO
569
HELX_P
A
LEU
571
A
LEU
571
5
20
3
A
LEU
608
A
LEU
608
HELX_P
A
ARG
612
A
ARG
612
5
21
5
A
SER
616
A
SER
616
HELX_P
A
HIS
633
A
HIS
633
1
22
18
A
ASP
635
A
ASP
635
HELX_P
A
LYS
652
A
LYS
652
1
23
18
A
PRO
656
A
PRO
656
HELX_P
A
VAL
661
A
VAL
661
5
24
6
A
ASP
669
A
ASP
669
HELX_P
A
TYR
673
A
TYR
673
5
25
5
A
GLY
677
A
GLY
677
HELX_P
A
GLY
690
A
GLY
690
1
26
14
A
ARG
709
A
ARG
709
HELX_P
A
ASP
712
A
ASP
712
5
27
4
A
ASP
718
A
ASP
718
HELX_P
A
PHE
720
A
PHE
720
5
28
3
A
ASP
728
A
ASP
728
HELX_P
A
ASN
735
A
ASN
735
1
29
8
A
GLN
736
A
GLN
736
HELX_P
A
LYS
746
A
LYS
746
1
30
11
A
ALA
747
A
ALA
747
HELX_P
A
GLY
749
A
GLY
749
5
31
3
A
LYS
752
A
LYS
752
HELX_P
A
ARG
756
A
ARG
756
5
32
5
disulf
2.053
A
CYS
428
A
SG
CYS
428
1_555
A
CYS
442
A
SG
CYS
442
1_555
disulf
2.090
A
CYS
506
A
SG
CYS
506
1_555
A
CYS
509
A
SG
CYS
509
1_555
covale
1.596
one
A
T
DA
1
B
P
DA
1
1_555
T
5CY
101
P
O1
5CY
1_555
covale
1.602
one
B
T
DA
1
B
P
DA
1
1_555
T
5CY
101
P
O1
5CY
1_555
covale
1.601
both
P
DG
11
C
O3'
DG
11
1_555
P
DOC
12
C
P
DOC
12
1_555
hydrog
WATSON-CRICK
T
DG
5
B
N1
DG
5
1_555
P
DOC
12
C
N3
DOC
12
1_555
hydrog
WATSON-CRICK
T
DG
5
B
N2
DG
5
1_555
P
DOC
12
C
O2
DOC
12
1_555
hydrog
WATSON-CRICK
T
DG
5
B
O6
DG
5
1_555
P
DOC
12
C
N4
DOC
12
1_555
hydrog
WATSON-CRICK
T
DC
6
B
N3
DC
6
1_555
P
DG
11
C
N1
DG
11
1_555
hydrog
WATSON-CRICK
T
DC
6
B
N4
DC
6
1_555
P
DG
11
C
O6
DG
11
1_555
hydrog
WATSON-CRICK
T
DC
6
B
O2
DC
6
1_555
P
DG
11
C
N2
DG
11
1_555
hydrog
WATSON-CRICK
T
DG
7
B
N1
DG
7
1_555
P
DC
10
C
N3
DC
10
1_555
hydrog
WATSON-CRICK
T
DG
7
B
N2
DG
7
1_555
P
DC
10
C
O2
DC
10
1_555
hydrog
WATSON-CRICK
T
DG
7
B
O6
DG
7
1_555
P
DC
10
C
N4
DC
10
1_555
hydrog
WATSON-CRICK
T
DC
8
B
N3
DC
8
1_555
P
DG
9
C
N1
DG
9
1_555
hydrog
WATSON-CRICK
T
DC
8
B
N4
DC
8
1_555
P
DG
9
C
O6
DG
9
1_555
hydrog
WATSON-CRICK
T
DC
8
B
O2
DC
8
1_555
P
DG
9
C
N2
DG
9
1_555
hydrog
WATSON-CRICK
T
DA
9
B
N1
DA
9
1_555
P
DT
8
C
N3
DT
8
1_555
hydrog
WATSON-CRICK
T
DA
9
B
N6
DA
9
1_555
P
DT
8
C
O4
DT
8
1_555
hydrog
WATSON-CRICK
T
DG
10
B
N1
DG
10
1_555
P
DC
7
C
N3
DC
7
1_555
hydrog
WATSON-CRICK
T
DG
10
B
N2
DG
10
1_555
P
DC
7
C
O2
DC
7
1_555
hydrog
WATSON-CRICK
T
DG
10
B
O6
DG
10
1_555
P
DC
7
C
N4
DC
7
1_555
hydrog
WATSON-CRICK
T
DT
11
B
N3
DT
11
1_555
P
DA
6
C
N1
DA
6
1_555
hydrog
WATSON-CRICK
T
DT
11
B
O4
DT
11
1_555
P
DA
6
C
N6
DA
6
1_555
hydrog
WATSON-CRICK
T
DT
12
B
N3
DT
12
1_555
P
DA
5
C
N1
DA
5
1_555
hydrog
WATSON-CRICK
T
DT
12
B
O4
DT
12
1_555
P
DA
5
C
N6
DA
5
1_555
hydrog
WATSON-CRICK
T
DC
13
B
N3
DC
13
1_555
P
DG
4
C
N1
DG
4
1_555
hydrog
WATSON-CRICK
T
DC
13
B
N4
DC
13
1_555
P
DG
4
C
O6
DG
4
1_555
hydrog
WATSON-CRICK
T
DC
13
B
O2
DC
13
1_555
P
DG
4
C
N2
DG
4
1_555
hydrog
WATSON-CRICK
T
DG
14
B
N1
DG
14
1_555
P
DC
3
C
N3
DC
3
1_555
hydrog
WATSON-CRICK
T
DG
14
B
N2
DG
14
1_555
P
DC
3
C
O2
DC
3
1_555
hydrog
WATSON-CRICK
T
DG
14
B
O6
DG
14
1_555
P
DC
3
C
N4
DC
3
1_555
hydrog
WATSON-CRICK
T
DC
15
B
N3
DC
15
1_555
P
DG
2
C
N1
DG
2
1_555
hydrog
WATSON-CRICK
T
DC
15
B
N4
DC
15
1_555
P
DG
2
C
O6
DG
2
1_555
hydrog
WATSON-CRICK
T
DC
15
B
O2
DC
15
1_555
P
DG
2
C
N2
DG
2
1_555
hydrog
WATSON-CRICK
T
DG
16
B
N1
DG
16
1_555
P
DC
1
C
N3
DC
1
1_555
hydrog
WATSON-CRICK
T
DG
16
B
N2
DG
16
1_555
P
DC
1
C
O2
DC
1
1_555
hydrog
WATSON-CRICK
T
DG
16
B
O6
DG
16
1_555
P
DC
1
C
N4
DC
1
1_555
TRANSFERASE/DNA
DNA polymerase, Binary complex, TRANSFERASE-DNA complex
A
GLN
758
A
GLN
758
1
A
LYS
759
A
LYS
759
3.59
DPOL_THES9
UNP
1
1
Q56366
MILDTDYITENGKPVIRVFKKENGEFKIEYDRTFEPYFYALLKDDSAIEDVKKVTAKRHGTVVKVKRAEKVQKKFLGRPI
EVWKLYFNHPQDVPAIRDRIRAHPAVVDIYEYDIPFAKRYLIDKGLIPMEGDEELTMLAFDIETLYHEGEEFGTGPILMI
SYADGSEARVITWKKIDLPYVDVVSTEKEMIKRFLRVVREKDPDVLITYNGDNFDFAYLKKRCEELGIKFTLGRDGSEPK
IQRMGDRFAVEVKGRIHFDLYPVIRRTINLPTYTLEAVYEAVFGKPKEKVYAEEIAQAWESGEGLERVARYSMEDAKVTY
ELGREFFPMEAQLSRLIGQSLWDVSRSSTGNLVEWFLLRKAYKRNELAPNKPDERELARRRGGYAGGYVKEPERGLWDNI
VYLDFRSLYPSIIITHNVSPDTLNREGCKEYDVAPEVGHKFCKDFPGFIPSLLGDLLEERQKIKRKMKATVDPLEKKLLD
YRQRAIKILANSFYGYYGYAKARWYCKECAESVTAWGREYIEMVIRELEEKFGFKVLYADTDGLHATIPGADAETVKKKA
KEFLKYINPKLPGLLELEYEGFYVRGFFVTKKKYAVIDEEGKITTRGLEIVRRDWSEIAKETQARVLEAILKHGDVEEAV
RIVKEVTEKLSKYEVPPEKLVIHEQITRDLRDYKATGPHVAVAKRLAARGVKIRPGTVISYIVLKGSGRIGDRAIPADEF
DPTKHRYDAEYYIENQVLPAVERILKAFGYRKEDLRYQKTKQVGLGAWLKVKGKK
4K8X
PDB
2
4K8X
4K8X
PDB
3
4K8X
1
775
4K8X
1
775
Q56366
A
1
1
775
1
16
4K8X
1
16
4K8X
T
2
1
16
1
12
4K8X
1
12
4K8X
P
3
1
12
1
ASP
engineered mutation
ALA
141
4K8X
A
Q56366
UNP
141
141
1
GLU
engineered mutation
ALA
143
4K8X
A
Q56366
UNP
143
143
3
4
2
6
2
7
2
3
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
ILE
2
A
ILE
2
A
GLU
10
A
GLU
10
A
LYS
13
A
LYS
13
A
GLU
22
A
GLU
22
A
GLU
25
A
GLU
25
A
ASP
31
A
ASP
31
A
ARG
67
A
ARG
67
A
PHE
75
A
PHE
75
A
ARG
78
A
ARG
78
A
TYR
86
A
TYR
86
A
TYR
37
A
TYR
37
A
LEU
42
A
LEU
42
A
VAL
106
A
VAL
106
A
TYR
110
A
TYR
110
A
THR
55
A
THR
55
A
ARG
58
A
ARG
58
A
THR
61
A
THR
61
A
LYS
64
A
LYS
64
A
VAL
181
A
VAL
181
A
VAL
183
A
VAL
183
A
ALA
168
A
ALA
168
A
THR
172
A
THR
172
A
ILE
157
A
ILE
157
A
ALA
163
A
ALA
163
A
MET
137
A
MET
137
A
THR
144
A
THR
144
A
VAL
205
A
VAL
205
A
THR
208
A
THR
208
A
ILE
256
A
ILE
256
A
ASP
259
A
ASP
259
A
LYS
240
A
LYS
240
A
MET
244
A
MET
244
A
ARG
247
A
ARG
247
A
GLU
251
A
GLU
251
A
VAL
389
A
VAL
389
A
LYS
390
A
LYS
390
A
LYS
535
A
LYS
535
A
ASP
540
A
ASP
540
A
GLY
543
A
GLY
543
A
THR
547
A
THR
547
A
GLY
395
A
GLY
395
A
PHE
405
A
PHE
405
A
LEU
577
A
LEU
577
A
THR
590
A
THR
590
A
LYS
593
A
LYS
593
A
ASP
598
A
ASP
598
A
ILE
603
A
ILE
603
A
ARG
606
A
ARG
606
A
TYR
431
A
TYR
431
A
VAL
433
A
VAL
433
A
LYS
440
A
LYS
440
A
CYS
442
A
CYS
442
A
ILE
662
A
ILE
662
A
GLN
665
A
GLN
665
A
VAL
698
A
VAL
698
A
VAL
703
A
VAL
703
A
ALA
714
A
ALA
714
A
PRO
716
A
PRO
716
BINDING SITE FOR RESIDUE SO4 A 801
A
SO4
801
Software
3
BINDING SITE FOR RESIDUE SO4 A 802
A
SO4
802
Software
1
BINDING SITE FOR RESIDUE SO4 A 803
A
SO4
803
Software
2
BINDING SITE FOR RESIDUE SO4 A 804
A
SO4
804
Software
4
BINDING SITE FOR RESIDUE SO4 A 805
A
SO4
805
Software
4
BINDING SITE FOR RESIDUE SO4 A 806
A
SO4
806
Software
4
BINDING SITE FOR RESIDUE SO4 A 807
A
SO4
807
Software
2
BINDING SITE FOR RESIDUE SO4 A 808
A
SO4
808
Software
5
BINDING SITE FOR RESIDUE SO4 A 809
A
SO4
809
Software
3
BINDING SITE FOR RESIDUE CL A 810
A
CL
810
Software
3
BINDING SITE FOR RESIDUE SO4 A 811
A
SO4
811
Software
5
BINDING SITE FOR RESIDUE SO4 A 812
A
SO4
812
Software
4
BINDING SITE FOR RESIDUE 5CY T 101
T
5CY
101
Software
19
BINDING SITE FOR RESIDUE EDO T 102
T
EDO
102
Software
2
A
ARG
406
A
ARG
406
3
1_555
A
ARG
460
A
ARG
460
3
1_555
A
LYS
487
A
LYS
487
3
1_555
A
ARG
32
A
ARG
32
1
1_555
A
ARG
484
A
ARG
484
2
1_555
T
DA
1
B
DA
1
2
1_555
A
LYS
360
A
LYS
360
4
1_555
A
LYS
363
A
LYS
363
4
1_555
A
ARG
364
A
ARG
364
4
1_555
A
LEU
452
A
LEU
452
4
1_555
A
TYR
388
A
TYR
388
4
1_555
A
LYS
390
A
LYS
390
4
1_555
A
GLU
391
A
GLU
391
4
1_555
A
HOH
934
R
HOH
4
1_555
A
GLU
130
A
GLU
130
4
1_555
A
GLY
131
A
GLY
131
4
1_555
A
ARG
335
A
ARG
335
4
1_555
A
ARG
482
A
ARG
482
4
1_555
A
ARG
97
A
ARG
97
2
1_555
A
ASP
113
A
ASP
113
2
1_555
A
THR
136
A
THR
136
5
1_555
A
MET
137
A
MET
137
5
1_555
A
ASP
164
A
ASP
164
5
1_555
A
GLY
165
A
GLY
165
5
1_555
A
TYR
320
A
TYR
320
5
1_555
A
LYS
289
A
LYS
289
3
1_555
A
TYR
291
A
TYR
291
3
1_555
A
ALA
292
A
ALA
292
3
1_555
A
TYR
110
A
TYR
110
3
1_555
A
PRO
369
A
PRO
369
3
1_555
A
ASN
370
A
ASN
370
3
1_555
A
ARG
406
A
ARG
406
5
1_555
A
SER
407
A
SER
407
5
1_555
A
LYS
487
A
LYS
487
5
1_555
A
HOH
980
R
HOH
5
1_555
T
DA
2
B
DA
2
5
1_555
A
TYR
7
A
TYR
7
4
1_555
A
GLN
91
A
GLN
91
4
1_555
A
PHE
116
A
PHE
116
4
1_555
A
HOH
1013
R
HOH
4
1_555
A
ARG
99
A
ARG
99
19
1_556
A
ALA
102
A
ALA
102
19
1_556
A
HIS
103
A
HIS
103
19
1_556
A
PRO
104
A
PRO
104
19
1_556
A
ARG
266
A
ARG
266
19
1_555
A
THR
267
A
THR
267
19
1_555
A
ILE
268
A
ILE
268
19
1_555
A
VAL
282
A
VAL
282
19
1_555
A
PHE
283
A
PHE
283
19
1_555
A
GLU
325
A
GLU
325
19
1_555
A
PHE
326
A
PHE
326
19
1_555
A
MET
329
A
MET
329
19
1_555
A
GLU
330
A
GLU
330
19
1_555
A
LEU
333
A
LEU
333
19
1_555
A
THR
349
A
THR
349
19
1_555
A
HOH
1001
R
HOH
19
1_555
T
DA
1
B
DA
1
19
1_555
T
DA
2
B
DA
2
19
1_555
T
DA
3
B
DA
3
19
1_555
A
GLY
245
A
GLY
245
2
1_555
T
DG
4
B
DG
4
2
1_555
18
P 21 21 2