0.007532
0.000000
0.000000
0.000000
0.007532
0.000000
0.000000
0.000000
0.007434
0.00000
0.00000
0.00000
Kumar, S.
Narayanan, A.
Yernool, D.A.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
16
90.00
90.00
90.00
132.770
132.770
134.510
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
O
N
75
N
P
N
76
N
O
N
77
N
O
N
78
N
O
N
79
N
C
N
80
R
C
N
81
N
O
N
82
S
C
N
83
N
O
N
84
N
C
N
85
R
C
Y
86
N
N
Y
87
N
C
Y
88
N
N
Y
89
N
C
Y
90
N
C
N
91
N
N
Y
92
N
N
Y
93
N
C
Y
94
N
N
Y
95
N
C
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
O
N
111
N
P
N
112
N
O
N
113
N
O
N
114
N
O
N
115
N
C
N
116
R
C
N
117
N
O
N
118
S
C
N
119
N
O
N
120
N
C
N
121
R
C
N
122
N
N
N
123
N
C
N
124
N
O
N
125
N
N
N
126
N
C
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
O
N
145
N
P
N
146
N
O
N
147
N
O
N
148
N
O
N
149
N
C
N
150
R
C
N
151
N
O
N
152
S
C
N
153
N
O
N
154
N
C
N
155
R
C
Y
156
N
N
Y
157
N
C
Y
158
N
N
Y
159
N
C
N
160
N
C
N
161
N
O
N
162
N
N
N
163
N
C
N
164
N
N
N
165
N
N
Y
166
N
C
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
O
N
182
N
P
N
183
N
O
N
184
N
O
N
185
N
O
N
186
N
C
N
187
R
C
N
188
N
O
N
189
S
C
N
190
N
O
N
191
N
C
N
192
R
C
N
193
N
N
N
194
N
C
N
195
N
O
N
196
N
N
N
197
N
C
N
198
N
O
N
199
N
C
N
200
N
C
N
201
N
C
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
N
N
218
S
C
N
219
N
C
N
220
N
O
N
221
N
C
N
222
N
C
N
223
N
C
N
224
N
O
N
225
N
N
N
226
N
O
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
N
N
238
S
C
N
239
N
C
N
240
N
O
N
241
N
C
N
242
N
C
N
243
N
C
N
244
N
O
N
245
N
O
N
246
N
O
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
N
N
257
N
C
N
258
N
C
N
259
N
O
N
260
N
O
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
N
N
267
S
C
N
268
N
C
N
269
N
O
N
270
N
C
Y
271
N
C
Y
272
N
N
Y
273
N
C
Y
274
N
C
Y
275
N
N
N
276
N
O
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
O
N
288
N
H
N
289
N
H
N
290
N
N
N
291
S
C
N
292
N
C
N
293
N
O
N
294
S
C
N
295
N
C
N
296
N
C
N
297
N
C
N
298
N
O
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
N
N
313
S
C
N
314
N
C
N
315
N
O
N
316
N
C
N
317
N
C
N
318
N
C
N
319
N
C
N
320
N
O
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
N
N
335
S
C
N
336
N
C
N
337
N
O
N
338
N
C
N
339
N
C
N
340
N
C
N
341
N
C
N
342
N
N
N
343
N
O
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
N
N
360
S
C
N
361
N
C
N
362
N
O
N
363
N
C
N
364
N
C
N
365
N
S
N
366
N
C
N
367
N
O
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
N
N
380
S
C
N
381
N
C
N
382
N
O
N
383
N
C
Y
384
N
C
Y
385
N
C
Y
386
N
C
Y
387
N
C
Y
388
N
C
Y
389
N
C
N
390
N
O
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
N
N
403
S
C
N
404
N
C
N
405
N
O
N
406
N
C
N
407
N
C
N
408
N
C
N
409
N
O
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
N
N
420
S
C
N
421
N
C
N
422
N
O
N
423
N
C
N
424
N
O
N
425
N
O
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
N
N
434
S
C
N
435
N
C
N
436
N
O
N
437
R
C
N
438
N
O
N
439
N
C
N
440
N
O
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
H
N
450
N
N
N
451
S
C
N
452
N
C
N
453
N
O
N
454
N
C
Y
455
N
C
Y
456
N
C
Y
457
N
C
Y
458
N
N
Y
459
N
C
Y
460
N
C
Y
461
N
C
Y
462
N
C
Y
463
N
C
N
464
N
O
N
465
N
H
N
466
N
H
N
467
N
H
N
468
N
H
N
469
N
H
N
470
N
H
N
471
N
H
N
472
N
H
N
473
N
H
N
474
N
H
N
475
N
H
N
476
N
H
N
477
N
N
N
478
S
C
N
479
N
C
N
480
N
O
N
481
N
C
Y
482
N
C
Y
483
N
C
Y
484
N
C
Y
485
N
C
Y
486
N
C
Y
487
N
C
N
488
N
O
N
489
N
O
N
490
N
H
N
491
N
H
N
492
N
H
N
493
N
H
N
494
N
H
N
495
N
H
N
496
N
H
N
497
N
H
N
498
N
H
N
499
N
H
N
500
N
H
N
501
N
N
N
502
S
C
N
503
N
C
N
504
N
O
N
505
N
C
N
506
N
C
N
507
N
C
N
508
N
O
N
509
N
H
N
510
N
H
N
511
N
H
N
512
N
H
N
513
N
H
N
514
N
H
N
515
N
H
N
516
N
H
N
517
N
H
N
518
N
H
N
519
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
doub
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
Y
93
N
sing
Y
94
N
sing
Y
95
N
doub
N
96
N
sing
Y
97
N
sing
Y
98
N
sing
Y
99
N
doub
N
100
N
sing
Y
101
N
doub
N
102
N
sing
N
103
N
sing
Y
104
N
sing
Y
105
N
doub
N
106
N
sing
Y
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
doub
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
doub
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
doub
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
doub
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
Y
166
N
sing
Y
167
N
sing
Y
168
N
doub
N
169
N
sing
Y
170
N
sing
N
171
N
sing
Y
172
N
doub
N
173
N
doub
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
doub
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
doub
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
doub
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
doub
N
212
N
sing
N
213
N
sing
N
214
N
doub
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
doub
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
doub
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
doub
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
doub
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
doub
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
doub
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
Y
276
N
sing
Y
277
N
doub
Y
278
N
doub
N
279
N
sing
Y
280
N
sing
N
281
N
sing
Y
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
doub
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
doub
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
doub
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
doub
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
doub
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
Y
384
N
doub
Y
385
N
sing
Y
386
N
sing
N
387
N
sing
Y
388
N
doub
N
389
N
sing
Y
390
N
doub
N
391
N
sing
Y
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
doub
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
doub
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
doub
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
doub
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
Y
453
N
doub
Y
454
N
sing
Y
455
N
sing
N
456
N
sing
Y
457
N
doub
Y
458
N
sing
Y
459
N
sing
N
460
N
sing
Y
461
N
sing
Y
462
N
doub
N
463
N
sing
Y
464
N
doub
N
465
N
sing
Y
466
N
sing
N
467
N
sing
N
468
N
sing
N
469
N
sing
N
470
N
sing
N
471
N
sing
N
472
N
sing
N
473
N
sing
N
474
N
sing
N
475
N
sing
N
476
N
doub
N
477
N
sing
N
478
N
sing
N
479
N
sing
N
480
N
sing
Y
481
N
doub
Y
482
N
sing
Y
483
N
sing
N
484
N
sing
Y
485
N
doub
N
486
N
sing
Y
487
N
doub
N
488
N
sing
Y
489
N
sing
N
490
N
sing
N
491
N
sing
N
492
N
sing
N
493
N
sing
N
494
N
sing
N
495
N
sing
N
496
N
sing
N
497
N
sing
N
498
N
sing
N
499
N
sing
N
500
N
doub
N
501
N
sing
N
502
N
sing
N
503
N
sing
N
504
N
sing
N
505
N
sing
N
506
N
sing
N
507
N
sing
N
508
N
sing
N
509
N
sing
N
510
N
sing
N
511
N
sing
UK
Nat Commun
2041-1723
5
3282
3282
10.1038/ncomms4282
24526190
An asymmetric heterodomain interface stabilizes a response regulator-DNA complex.
2014
10.2210/pdb4kfc/pdb
pdb_00004kfc
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2011-10-30
MARMOSAIC 300 mm CCD
SINGLE WAVELENGTH
M
x-ray
1
1.0332
1.0
23-ID-B
APS
1.0332
SYNCHROTRON
APS BEAMLINE 23-ID-B
25437.207
KDP operon transcriptional regulatory protein KdpE
UNP residues 3-225
E216A
2
man
polymer
9025.812
Promoter DNA
1
syn
polymer
9418.117
Promoter DNA
1
syn
polymer
18.015
water
148
nat
water
no
no
GAMANVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEFIRDLRQWSAVPVIVL
SARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFR
LLAVLLNNAGKVLTQRQLLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITATGIGYRFML
GAMANVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEFIRDLRQWSAVPVIVL
SARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFR
LLAVLLNNAGKVLTQRQLLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITATGIGYRFML
A,B
polypeptide(L)
no
no
(DC)(DA)(DT)(DT)(DT)(DT)(DT)(DA)(DT)(DA)(DC)(DT)(DT)(DT)(DT)(DT)(DT)(DT)(DA)(DC)
(DA)(DC)(DC)(DC)(DC)(DG)(DC)(DC)(DC)(DG)
CATTTTTATACTTTTTTTACACCCCGCCCG
Y
polydeoxyribonucleotide
no
no
(DC)(DG)(DG)(DG)(DC)(DG)(DG)(DG)(DG)(DT)(DG)(DT)(DA)(DA)(DA)(DA)(DA)(DA)(DA)(DG)
(DT)(DA)(DT)(DA)(DA)(DA)(DA)(DA)(DT)(DG)
CGGGCGGGGTGTAAAAAAAGTATAAAAATG
Z
polydeoxyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
K-12
sample
b0694, JW5096, kdpE
83333
Escherichia coli
562
Escherichia coli
1
4.28
71.28
VAPOR DIFFUSION, HANGING DROP
5.5
3-5% PEG 4K, 0.1 M sodium acetate buffer (pH 5.5), 0.1 M MgCl2, 2mM L-proline, VAPOR DIFFUSION, HANGING DROP, temperature 293K
293
-3.472
1
19
Y
1
Z
30
-0.147
Y_DC1:DG30_Z
1
-9.356
0.058
0.130
-0.119
13.516
1
20
Y
2
Z
29
-2.421
Y_DA2:DT29_Z
2
-16.778
-0.152
0.361
-0.166
5.150
1
20
Y
3
Z
28
-1.656
Y_DT3:DA28_Z
3
-15.892
-0.395
0.298
-0.162
-3.211
1
20
Y
4
Z
27
2.797
Y_DT4:DA27_Z
4
-17.834
-0.090
0.347
0.052
-3.386
1
20
Y
5
Z
26
-3.161
Y_DT5:DA26_Z
5
-16.562
-0.085
0.193
-0.107
-13.959
1
20
Y
6
Z
25
-3.414
Y_DT6:DA25_Z
6
-12.317
-0.535
0.374
-0.111
-13.985
1
20
Y
7
Z
24
-5.656
Y_DT7:DA24_Z
7
-13.548
0.349
0.539
-0.231
-6.144
1
20
Y
8
Z
23
-1.974
Y_DA8:DT23_Z
8
-5.953
0.460
-0.072
-0.089
13.050
1
20
Y
9
Z
22
-2.579
Y_DT9:DA22_Z
9
-3.318
-0.232
-0.087
-0.055
15.281
1
20
Y
10
Z
21
-1.429
Y_DA10:DT21_Z
10
-8.454
-0.042
0.286
-0.089
-0.522
1
19
Y
11
Z
20
-1.105
Y_DC11:DG20_Z
11
-15.112
0.739
0.179
-0.309
-1.697
1
20
Y
12
Z
19
-1.666
Y_DT12:DA19_Z
12
-17.578
-0.138
-0.033
-0.137
-3.215
1
20
Y
13
Z
18
-1.352
Y_DT13:DA18_Z
13
-16.350
-0.589
0.056
-0.139
-2.926
1
20
Y
14
Z
17
-3.959
Y_DT14:DA17_Z
14
-12.940
-0.364
0.435
-0.125
3.383
Y
15
Z
16
8.159
Y_DT15:DA16_Z
15
-24.713
-0.250
0.049
0.306
1.261
1
Y
16
Z
15
10.397
Y_DT16:DA15_Z
16
-31.661
-0.058
0.666
0.083
-0.347
1
20
Y
17
Z
14
-10.490
Y_DT17:DA14_Z
17
-28.116
-0.630
0.483
-0.184
-5.476
1
20
Y
18
Z
13
-5.244
Y_DT18:DA13_Z
18
-12.923
0.056
0.114
-0.117
1.725
1
20
Y
19
Z
12
-6.685
Y_DA19:DT12_Z
19
-2.942
-0.004
0.882
-0.219
16.356
Y
20
Z
11
10.716
Y_DC20:DG11_Z
20
-3.198
1.339
-0.351
0.759
5.012
Y
21
Z
10
8.646
Y_DA21:DT10_Z
21
-13.347
1.183
0.111
0.125
-3.445
1
19
Y
22
Z
9
-3.417
Y_DC22:DG9_Z
22
-13.686
-0.752
0.167
-0.122
0.805
1
Y
23
Z
8
-17.017
Y_DC23:DG8_Z
23
-24.288
-1.891
0.003
0.306
-16.167
Y
24
Z
7
-22.942
Y_DC24:DG7_Z
24
-9.840
-1.081
-0.115
0.701
-8.495
1
19
Y
25
Z
6
-2.710
Y_DC25:DG6_Z
25
-1.580
-1.146
0.646
-0.213
17.287
1
19
Y
26
Z
5
-5.699
Y_DG26:DC5_Z
26
-12.965
-0.224
1.091
-0.278
15.550
Y
27
Z
4
3.136
Y_DC27:DG4_Z
27
-24.534
3.800
0.102
-0.338
8.705
1
Y
28
Z
3
-7.044
Y_DC28:DG3_Z
28
-40.687
0.956
-0.226
-0.483
-13.247
1
Y
29
Z
2
29.739
Y_DC29:DG2_Z
29
-8.717
0.449
1.147
0.863
0.390
Y
30
Z
1
2.348
Y_DG30:DC1_Z
30
-10.115
-3.300
-0.552
-0.981
3.195
30.933
Y
Y
1
2
12.793
Z
Z
30
29
3.125
6.770
-0.644
0.637
YY_DC1DA2:DT29DG30_ZZ
1
-0.324
0.612
30.199
-0.087
1.146
3.469
31.102
Y
Y
2
3
-2.186
Z
Z
29
28
3.407
-1.172
0.733
-1.014
YY_DA2DT3:DA28DT29_ZZ
2
1.312
-2.448
31.054
-1.655
-1.104
3.437
38.120
Y
Y
3
4
-2.118
Z
Z
28
27
3.412
-1.381
0.266
-0.465
YY_DT3DT4:DA27DA28_ZZ
3
3.671
-5.630
37.925
-0.528
0.080
3.160
39.233
Y
Y
4
5
-3.504
Z
Z
27
26
3.140
-2.351
0.065
-0.439
YY_DT4DT5:DA26DA27_ZZ
4
1.347
-2.007
39.143
-0.384
0.058
3.456
36.034
Y
Y
5
6
-3.499
Z
Z
26
25
3.432
-2.163
0.250
-0.490
YY_DT5DT6:DA25DA26_ZZ
5
0.295
-0.477
35.970
-0.468
-0.360
3.292
34.776
Y
Y
6
7
2.999
Z
Z
25
24
3.336
1.792
-0.192
-0.869
YY_DT6DT7:DA24DA25_ZZ
6
-0.783
1.310
34.722
-1.731
0.201
3.072
32.871
Y
Y
7
8
5.893
Z
Z
24
23
3.101
3.314
0.459
-0.484
YY_DT7DA8:DT23DA24_ZZ
7
5.597
-9.952
32.239
-1.396
0.101
2.811
22.528
Y
Y
8
9
4.627
Z
Z
23
22
2.883
1.806
0.011
-0.793
YY_DA8DT9:DA22DT23_ZZ
8
0.163
-0.419
22.456
-2.607
0.024
3.362
40.966
Y
Y
9
10
-0.550
Z
Z
22
21
3.365
-0.385
0.245
-0.026
YY_DT9DA10:DT21DA22_ZZ
9
-0.465
0.664
40.962
0.006
-0.403
3.956
38.462
Y
Y
10
11
-6.577
Z
Z
21
20
3.842
-4.324
0.331
-1.284
YY_DA10DC11:DG20DT21_ZZ
10
-0.293
0.445
38.227
-1.307
-0.547
3.403
30.290
Y
Y
11
12
-1.720
Z
Z
20
19
3.451
-0.898
-0.782
-0.619
YY_DC11DT12:DA19DG20_ZZ
11
2.226
-4.264
30.197
-0.994
1.967
3.414
31.828
Y
Y
12
13
-12.658
Z
Z
19
18
3.347
-6.888
-0.330
-0.628
YY_DT12DT13:DA18DA19_ZZ
12
-1.284
2.359
31.067
0.171
0.356
3.300
38.608
Y
Y
13
14
-8.044
Z
Z
18
17
3.271
-5.298
0.203
-0.604
YY_DT13DT14:DA17DA18_ZZ
13
-2.853
4.332
38.154
-0.253
-0.662
3.054
39.009
Y
Y
14
15
-9.008
Z
Z
17
16
3.033
-5.982
0.401
-0.199
YY_DT14DT15:DA16DA17_ZZ
14
4.350
-6.551
38.328
0.380
-0.107
3.127
36.741
Y
Y
15
16
5.310
Z
Z
16
15
3.238
3.335
0.463
-0.262
YY_DT15DT16:DA15DA16_ZZ
15
-4.415
7.029
36.336
-0.860
-1.324
3.371
38.759
Y
Y
16
17
-11.324
Z
Z
15
14
3.262
-7.448
-0.579
-0.640
YY_DT16DT17:DA14DA15_ZZ
16
-5.428
8.253
37.688
-0.027
0.188
3.452
36.260
Y
Y
17
18
-6.538
Z
Z
14
13
3.401
-4.050
0.390
-0.450
YY_DT17DT18:DA13DA14_ZZ
17
4.611
-7.443
35.754
-0.124
0.055
2.855
30.288
Y
Y
18
19
3.143
Z
Z
13
12
2.950
1.640
0.291
-1.184
YY_DT18DA19:DT12DA13_ZZ
18
-2.214
4.243
30.165
-2.560
-0.954
3.431
35.157
Y
Y
19
20
1.660
Z
Z
12
11
3.172
0.988
1.430
-0.581
YY_DA19DC20:DG11DT12_ZZ
19
10.332
-17.347
33.637
-1.114
-0.774
3.560
43.164
Y
Y
20
21
7.811
Z
Z
11
10
3.568
5.723
-0.540
-0.101
YY_DC20DA21:DT10DG11_ZZ
20
-4.008
5.470
42.621
-0.753
0.303
3.426
18.104
Y
Y
21
22
2.413
Z
Z
10
9
3.393
0.756
-1.024
-1.904
YY_DA21DC22:DG9DT10_ZZ
21
-2.731
8.713
17.883
-6.501
1.623
3.136
27.827
Y
Y
22
23
14.692
Z
Z
9
8
3.246
6.985
-1.093
-0.354
YY_DC22DC23:DG8DG9_ZZ
22
-2.277
4.789
26.858
-2.400
1.731
3.916
41.010
Y
Y
23
24
8.395
Z
Z
8
7
3.856
5.859
-0.109
0.709
YY_DC23DC24:DG7DG8_ZZ
23
-2.832
4.058
40.513
0.248
-0.214
3.019
30.589
Y
Y
24
25
12.956
Z
Z
7
6
3.364
6.774
1.531
-0.624
YY_DC24DC25:DG6DG7_ZZ
24
-2.446
4.678
29.749
-2.511
-3.381
2.650
36.632
Y
Y
25
26
-6.882
Z
Z
6
5
2.671
-4.298
-0.226
0.054
YY_DC25DG26:DC5DG6_ZZ
25
-5.909
9.461
35.921
0.570
-0.307
3.895
59.278
Y
Y
26
27
-2.441
Z
Z
5
4
3.802
-2.396
0.990
0.705
YY_DG26DC27:DG4DC5_ZZ
26
13.389
-13.637
57.835
0.858
-0.189
2.560
37.611
Y
Y
27
28
-21.495
Z
Z
4
3
3.225
-13.565
-0.455
1.353
YY_DC27DC28:DG3DG4_ZZ
27
-1.013
1.605
35.148
3.716
0.586
3.747
42.049
Y
Y
28
29
-8.656
Z
Z
3
2
3.906
-6.191
2.751
0.693
YY_DC28DC29:DG2DG3_ZZ
28
-0.362
0.506
41.610
1.719
-3.878
2.463
26.893
Y
Y
29
30
26.581
Z
Z
2
1
3.172
11.822
-1.572
0.174
YY_DC29DG30:DC1DG2_ZZ
29
6.441
-14.481
23.335
-2.435
4.911
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_ref_seq_dif
repository
Initial release
Database references
Data collection
Database references
Refinement description
1
0
2014-02-19
1
1
2014-03-19
1
2
2023-09-20
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
RCSB
Y
RCSB
2013-04-26
REL
REL
HOH
water
CHEMICALLY SYNTHESIZED
sample
CHEMICALLY SYNTHESIZED
sample
1ZH4
1ZH4 and 3ZQ7
PDB
experimental model
3ZQ7
1ZH4 and 3ZQ7
PDB
experimental model
HOH
1
4
HOH
HOH
301
A
HOH
4
4
HOH
HOH
302
A
HOH
6
4
HOH
HOH
303
A
HOH
8
4
HOH
HOH
304
A
HOH
11
4
HOH
HOH
305
A
HOH
14
4
HOH
HOH
306
A
HOH
18
4
HOH
HOH
307
A
HOH
19
4
HOH
HOH
308
A
HOH
21
4
HOH
HOH
309
A
HOH
22
4
HOH
HOH
310
A
HOH
24
4
HOH
HOH
311
A
HOH
25
4
HOH
HOH
312
A
HOH
28
4
HOH
HOH
313
A
HOH
29
4
HOH
HOH
314
A
HOH
31
4
HOH
HOH
315
A
HOH
36
4
HOH
HOH
316
A
HOH
39
4
HOH
HOH
317
A
HOH
40
4
HOH
HOH
318
A
HOH
41
4
HOH
HOH
319
A
HOH
42
4
HOH
HOH
320
A
HOH
43
4
HOH
HOH
321
A
HOH
44
4
HOH
HOH
322
A
HOH
45
4
HOH
HOH
323
A
HOH
48
4
HOH
HOH
324
A
HOH
49
4
HOH
HOH
325
A
HOH
52
4
HOH
HOH
326
A
HOH
53
4
HOH
HOH
327
A
HOH
54
4
HOH
HOH
328
A
HOH
59
4
HOH
HOH
329
A
HOH
60
4
HOH
HOH
330
A
HOH
61
4
HOH
HOH
331
A
HOH
62
4
HOH
HOH
332
A
HOH
63
4
HOH
HOH
333
A
HOH
65
4
HOH
HOH
334
A
HOH
67
4
HOH
HOH
335
A
HOH
68
4
HOH
HOH
336
A
HOH
71
4
HOH
HOH
337
A
HOH
73
4
HOH
HOH
338
A
HOH
74
4
HOH
HOH
339
A
HOH
76
4
HOH
HOH
340
A
HOH
77
4
HOH
HOH
341
A
HOH
78
4
HOH
HOH
342
A
HOH
79
4
HOH
HOH
343
A
HOH
80
4
HOH
HOH
344
A
HOH
82
4
HOH
HOH
345
A
HOH
84
4
HOH
HOH
346
A
HOH
86
4
HOH
HOH
347
A
HOH
87
4
HOH
HOH
348
A
HOH
90
4
HOH
HOH
349
A
HOH
91
4
HOH
HOH
350
A
HOH
92
4
HOH
HOH
351
A
HOH
96
4
HOH
HOH
352
A
HOH
99
4
HOH
HOH
353
A
HOH
101
4
HOH
HOH
354
A
HOH
103
4
HOH
HOH
355
A
HOH
105
4
HOH
HOH
356
A
HOH
106
4
HOH
HOH
357
A
HOH
108
4
HOH
HOH
358
A
HOH
109
4
HOH
HOH
359
A
HOH
110
4
HOH
HOH
360
A
HOH
112
4
HOH
HOH
361
A
HOH
116
4
HOH
HOH
362
A
HOH
118
4
HOH
HOH
363
A
HOH
120
4
HOH
HOH
364
A
HOH
122
4
HOH
HOH
365
A
HOH
124
4
HOH
HOH
366
A
HOH
129
4
HOH
HOH
367
A
HOH
130
4
HOH
HOH
368
A
HOH
132
4
HOH
HOH
369
A
HOH
137
4
HOH
HOH
370
A
HOH
138
4
HOH
HOH
371
A
HOH
139
4
HOH
HOH
372
A
HOH
140
4
HOH
HOH
373
A
HOH
141
4
HOH
HOH
374
A
HOH
142
4
HOH
HOH
375
A
HOH
144
4
HOH
HOH
376
A
HOH
145
4
HOH
HOH
377
A
HOH
147
4
HOH
HOH
378
A
HOH
148
4
HOH
HOH
379
A
HOH
149
4
HOH
HOH
380
A
HOH
2
4
HOH
HOH
301
B
HOH
3
4
HOH
HOH
302
B
HOH
5
4
HOH
HOH
303
B
HOH
7
4
HOH
HOH
304
B
HOH
9
4
HOH
HOH
305
B
HOH
10
4
HOH
HOH
306
B
HOH
13
4
HOH
HOH
307
B
HOH
15
4
HOH
HOH
308
B
HOH
16
4
HOH
HOH
309
B
HOH
17
4
HOH
HOH
310
B
HOH
26
4
HOH
HOH
311
B
HOH
30
4
HOH
HOH
312
B
HOH
32
4
HOH
HOH
313
B
HOH
33
4
HOH
HOH
314
B
HOH
34
4
HOH
HOH
315
B
HOH
37
4
HOH
HOH
316
B
HOH
38
4
HOH
HOH
317
B
HOH
46
4
HOH
HOH
318
B
HOH
47
4
HOH
HOH
319
B
HOH
50
4
HOH
HOH
320
B
HOH
51
4
HOH
HOH
321
B
HOH
55
4
HOH
HOH
322
B
HOH
56
4
HOH
HOH
323
B
HOH
57
4
HOH
HOH
324
B
HOH
58
4
HOH
HOH
325
B
HOH
64
4
HOH
HOH
326
B
HOH
66
4
HOH
HOH
327
B
HOH
69
4
HOH
HOH
328
B
HOH
72
4
HOH
HOH
329
B
HOH
75
4
HOH
HOH
330
B
HOH
83
4
HOH
HOH
331
B
HOH
85
4
HOH
HOH
332
B
HOH
88
4
HOH
HOH
333
B
HOH
93
4
HOH
HOH
334
B
HOH
94
4
HOH
HOH
335
B
HOH
95
4
HOH
HOH
336
B
HOH
97
4
HOH
HOH
337
B
HOH
98
4
HOH
HOH
338
B
HOH
100
4
HOH
HOH
339
B
HOH
102
4
HOH
HOH
340
B
HOH
104
4
HOH
HOH
341
B
HOH
107
4
HOH
HOH
342
B
HOH
111
4
HOH
HOH
343
B
HOH
113
4
HOH
HOH
344
B
HOH
114
4
HOH
HOH
345
B
HOH
115
4
HOH
HOH
346
B
HOH
117
4
HOH
HOH
347
B
HOH
121
4
HOH
HOH
348
B
HOH
123
4
HOH
HOH
349
B
HOH
125
4
HOH
HOH
350
B
HOH
127
4
HOH
HOH
351
B
HOH
128
4
HOH
HOH
352
B
HOH
131
4
HOH
HOH
353
B
HOH
133
4
HOH
HOH
354
B
HOH
134
4
HOH
HOH
355
B
HOH
135
4
HOH
HOH
356
B
HOH
136
4
HOH
HOH
357
B
HOH
143
4
HOH
HOH
358
B
HOH
146
4
HOH
HOH
359
B
HOH
23
4
HOH
HOH
101
Y
HOH
27
4
HOH
HOH
102
Y
HOH
35
4
HOH
HOH
103
Y
HOH
81
4
HOH
HOH
104
Y
HOH
89
4
HOH
HOH
105
Y
HOH
12
4
HOH
HOH
101
Z
HOH
20
4
HOH
HOH
102
Z
HOH
70
4
HOH
HOH
103
Z
HOH
119
4
HOH
HOH
104
Z
n
1
-1
A
ALA
0
n
2
ALA
0
A
MET
1
n
3
MET
1
A
ALA
2
n
4
ALA
2
A
ASN
3
n
5
ASN
3
A
VAL
4
n
6
VAL
4
A
LEU
5
n
7
LEU
5
A
ILE
6
n
8
ILE
6
A
VAL
7
n
9
VAL
7
A
GLU
8
n
10
GLU
8
A
ASP
9
n
11
ASP
9
A
GLU
10
n
12
GLU
10
A
GLN
11
n
13
GLN
11
A
ALA
12
n
14
ALA
12
A
ILE
13
n
15
ILE
13
A
ARG
14
n
16
ARG
14
A
ARG
15
n
17
ARG
15
A
PHE
16
n
18
PHE
16
A
LEU
17
n
19
LEU
17
A
ARG
18
n
20
ARG
18
A
THR
19
n
21
THR
19
A
ALA
20
n
22
ALA
20
A
LEU
21
n
23
LEU
21
A
GLU
22
n
24
GLU
22
A
GLY
23
n
25
GLY
23
A
ASP
24
n
26
ASP
24
A
GLY
25
n
27
GLY
25
A
MET
26
n
28
MET
26
A
ARG
27
n
29
ARG
27
A
VAL
28
n
30
VAL
28
A
PHE
29
n
31
PHE
29
A
GLU
30
n
32
GLU
30
A
ALA
31
n
33
ALA
31
A
GLU
32
n
34
GLU
32
A
THR
33
n
35
THR
33
A
LEU
34
n
36
LEU
34
A
GLN
35
n
37
GLN
35
A
ARG
36
n
38
ARG
36
A
GLY
37
n
39
GLY
37
A
LEU
38
n
40
LEU
38
A
LEU
39
n
41
LEU
39
A
GLU
40
n
42
GLU
40
A
ALA
41
n
43
ALA
41
A
ALA
42
n
44
ALA
42
A
THR
43
n
45
THR
43
A
ARG
44
n
46
ARG
44
A
LYS
45
n
47
LYS
45
A
PRO
46
n
48
PRO
46
A
ASP
47
n
49
ASP
47
A
LEU
48
n
50
LEU
48
A
ILE
49
n
51
ILE
49
A
ILE
50
n
52
ILE
50
A
LEU
51
n
53
LEU
51
A
ASP
52
n
54
ASP
52
A
LEU
53
n
55
LEU
53
A
GLY
54
n
56
GLY
54
A
LEU
55
n
57
LEU
55
A
PRO
56
n
58
PRO
56
A
ASP
57
n
59
ASP
57
A
GLY
58
n
60
GLY
58
A
ASP
59
n
61
ASP
59
A
GLY
60
n
62
GLY
60
A
ILE
61
n
63
ILE
61
A
GLU
62
n
64
GLU
62
A
PHE
63
n
65
PHE
63
A
ILE
64
n
66
ILE
64
A
ARG
65
n
67
ARG
65
A
ASP
66
n
68
ASP
66
A
LEU
67
n
69
LEU
67
A
ARG
68
n
70
ARG
68
A
GLN
69
n
71
GLN
69
A
TRP
70
n
72
TRP
70
A
SER
71
n
73
SER
71
A
ALA
72
n
74
ALA
72
A
VAL
73
n
75
VAL
73
A
PRO
74
n
76
PRO
74
A
VAL
75
n
77
VAL
75
A
ILE
76
n
78
ILE
76
A
VAL
77
n
79
VAL
77
A
LEU
78
n
80
LEU
78
A
SER
79
n
81
SER
79
A
ALA
80
n
82
ALA
80
A
ARG
81
n
83
ARG
81
A
SER
82
n
84
SER
82
A
GLU
83
n
85
GLU
83
A
GLU
84
n
86
GLU
84
A
SER
85
n
87
SER
85
A
ASP
86
n
88
ASP
86
A
LYS
87
n
89
LYS
87
A
ILE
88
n
90
ILE
88
A
ALA
89
n
91
ALA
89
A
ALA
90
n
92
ALA
90
A
LEU
91
n
93
LEU
91
A
ASP
92
n
94
ASP
92
A
ALA
93
n
95
ALA
93
A
GLY
94
n
96
GLY
94
A
ALA
95
n
97
ALA
95
A
ASP
96
n
98
ASP
96
A
ASP
97
n
99
ASP
97
A
TYR
98
n
100
TYR
98
A
LEU
99
n
101
LEU
99
A
SER
100
n
102
SER
100
A
LYS
101
n
103
LYS
101
A
PRO
102
n
104
PRO
102
A
PHE
103
n
105
PHE
103
A
GLY
104
n
106
GLY
104
A
ILE
105
n
107
ILE
105
A
GLY
106
n
108
GLY
106
A
GLU
107
n
109
GLU
107
A
LEU
108
n
110
LEU
108
A
GLN
109
n
111
GLN
109
A
ALA
110
n
112
ALA
110
A
ARG
111
n
113
ARG
111
A
LEU
112
n
114
LEU
112
A
ARG
113
n
115
ARG
113
A
VAL
114
n
116
VAL
114
A
ALA
115
n
117
ALA
115
A
LEU
116
n
118
LEU
116
A
ARG
117
n
119
ARG
117
A
ARG
118
n
120
ARG
118
A
HIS
119
n
121
HIS
119
A
SER
120
n
122
SER
120
A
n
123
121
A
n
124
122
A
n
125
123
A
ALA
124
n
126
ALA
124
A
PRO
125
n
127
PRO
125
A
ASP
126
n
128
ASP
126
A
PRO
127
n
129
PRO
127
A
LEU
128
n
130
LEU
128
A
VAL
129
n
131
VAL
129
A
LYS
130
n
132
LYS
130
A
PHE
131
n
133
PHE
131
A
SER
132
n
134
SER
132
A
ASP
133
n
135
ASP
133
A
VAL
134
n
136
VAL
134
A
THR
135
n
137
THR
135
A
VAL
136
n
138
VAL
136
A
ASP
137
n
139
ASP
137
A
LEU
138
n
140
LEU
138
A
ALA
139
n
141
ALA
139
A
ALA
140
n
142
ALA
140
A
ARG
141
n
143
ARG
141
A
VAL
142
n
144
VAL
142
A
ILE
143
n
145
ILE
143
A
HIS
144
n
146
HIS
144
A
ARG
145
n
147
ARG
145
A
GLY
146
n
148
GLY
146
A
GLU
147
n
149
GLU
147
A
GLU
148
n
150
GLU
148
A
GLU
149
n
151
GLU
149
A
VAL
150
n
152
VAL
150
A
HIS
151
n
153
HIS
151
A
LEU
152
n
154
LEU
152
A
THR
153
n
155
THR
153
A
PRO
154
n
156
PRO
154
A
ILE
155
n
157
ILE
155
A
GLU
156
n
158
GLU
156
A
PHE
157
n
159
PHE
157
A
ARG
158
n
160
ARG
158
A
LEU
159
n
161
LEU
159
A
LEU
160
n
162
LEU
160
A
ALA
161
n
163
ALA
161
A
VAL
162
n
164
VAL
162
A
LEU
163
n
165
LEU
163
A
LEU
164
n
166
LEU
164
A
ASN
165
n
167
ASN
165
A
ASN
166
n
168
ASN
166
A
ALA
167
n
169
ALA
167
A
GLY
168
n
170
GLY
168
A
LYS
169
n
171
LYS
169
A
VAL
170
n
172
VAL
170
A
LEU
171
n
173
LEU
171
A
THR
172
n
174
THR
172
A
GLN
173
n
175
GLN
173
A
ARG
174
n
176
ARG
174
A
GLN
175
n
177
GLN
175
A
LEU
176
n
178
LEU
176
A
LEU
177
n
179
LEU
177
A
ASN
178
n
180
ASN
178
A
GLN
179
n
181
GLN
179
A
VAL
180
n
182
VAL
180
A
TRP
181
n
183
TRP
181
A
GLY
182
n
184
GLY
182
A
PRO
183
n
185
PRO
183
A
ASN
184
n
186
ASN
184
A
ALA
185
n
187
ALA
185
A
VAL
186
n
188
VAL
186
A
GLU
187
n
189
GLU
187
A
HIS
188
n
190
HIS
188
A
SER
189
n
191
SER
189
A
HIS
190
n
192
HIS
190
A
TYR
191
n
193
TYR
191
A
LEU
192
n
194
LEU
192
A
ARG
193
n
195
ARG
193
A
ILE
194
n
196
ILE
194
A
TYR
195
n
197
TYR
195
A
MET
196
n
198
MET
196
A
GLY
197
n
199
GLY
197
A
HIS
198
n
200
HIS
198
A
LEU
199
n
201
LEU
199
A
ARG
200
n
202
ARG
200
A
GLN
201
n
203
GLN
201
A
LYS
202
n
204
LYS
202
A
LEU
203
n
205
LEU
203
A
GLU
204
n
206
GLU
204
A
GLN
205
n
207
GLN
205
A
ASP
206
n
208
ASP
206
A
PRO
207
n
209
PRO
207
A
ALA
208
n
210
ALA
208
A
ARG
209
n
211
ARG
209
A
PRO
210
n
212
PRO
210
A
ARG
211
n
213
ARG
211
A
HIS
212
n
214
HIS
212
A
PHE
213
n
215
PHE
213
A
ILE
214
n
216
ILE
214
A
THR
215
n
217
THR
215
A
ALA
216
n
218
ALA
216
A
THR
217
n
219
THR
217
A
GLY
218
n
220
GLY
218
A
ILE
219
n
221
ILE
219
A
GLY
220
n
222
GLY
220
A
TYR
221
n
223
TYR
221
A
ARG
222
n
224
ARG
222
A
PHE
223
n
225
PHE
223
A
MET
224
n
226
MET
224
A
LEU
225
n
227
LEU
225
A
n
1
-1
B
ALA
0
n
2
ALA
0
B
MET
1
n
3
MET
1
B
ALA
2
n
4
ALA
2
B
ASN
3
n
5
ASN
3
B
VAL
4
n
6
VAL
4
B
LEU
5
n
7
LEU
5
B
ILE
6
n
8
ILE
6
B
VAL
7
n
9
VAL
7
B
GLU
8
n
10
GLU
8
B
ASP
9
n
11
ASP
9
B
GLU
10
n
12
GLU
10
B
GLN
11
n
13
GLN
11
B
ALA
12
n
14
ALA
12
B
ILE
13
n
15
ILE
13
B
ARG
14
n
16
ARG
14
B
ARG
15
n
17
ARG
15
B
PHE
16
n
18
PHE
16
B
LEU
17
n
19
LEU
17
B
ARG
18
n
20
ARG
18
B
THR
19
n
21
THR
19
B
ALA
20
n
22
ALA
20
B
LEU
21
n
23
LEU
21
B
GLU
22
n
24
GLU
22
B
GLY
23
n
25
GLY
23
B
ASP
24
n
26
ASP
24
B
GLY
25
n
27
GLY
25
B
MET
26
n
28
MET
26
B
ARG
27
n
29
ARG
27
B
VAL
28
n
30
VAL
28
B
PHE
29
n
31
PHE
29
B
GLU
30
n
32
GLU
30
B
ALA
31
n
33
ALA
31
B
GLU
32
n
34
GLU
32
B
THR
33
n
35
THR
33
B
LEU
34
n
36
LEU
34
B
GLN
35
n
37
GLN
35
B
ARG
36
n
38
ARG
36
B
GLY
37
n
39
GLY
37
B
LEU
38
n
40
LEU
38
B
LEU
39
n
41
LEU
39
B
GLU
40
n
42
GLU
40
B
ALA
41
n
43
ALA
41
B
ALA
42
n
44
ALA
42
B
THR
43
n
45
THR
43
B
ARG
44
n
46
ARG
44
B
LYS
45
n
47
LYS
45
B
PRO
46
n
48
PRO
46
B
ASP
47
n
49
ASP
47
B
LEU
48
n
50
LEU
48
B
ILE
49
n
51
ILE
49
B
ILE
50
n
52
ILE
50
B
LEU
51
n
53
LEU
51
B
ASP
52
n
54
ASP
52
B
LEU
53
n
55
LEU
53
B
GLY
54
n
56
GLY
54
B
LEU
55
n
57
LEU
55
B
PRO
56
n
58
PRO
56
B
ASP
57
n
59
ASP
57
B
GLY
58
n
60
GLY
58
B
ASP
59
n
61
ASP
59
B
GLY
60
n
62
GLY
60
B
ILE
61
n
63
ILE
61
B
GLU
62
n
64
GLU
62
B
PHE
63
n
65
PHE
63
B
ILE
64
n
66
ILE
64
B
ARG
65
n
67
ARG
65
B
ASP
66
n
68
ASP
66
B
LEU
67
n
69
LEU
67
B
ARG
68
n
70
ARG
68
B
GLN
69
n
71
GLN
69
B
TRP
70
n
72
TRP
70
B
SER
71
n
73
SER
71
B
ALA
72
n
74
ALA
72
B
VAL
73
n
75
VAL
73
B
PRO
74
n
76
PRO
74
B
VAL
75
n
77
VAL
75
B
ILE
76
n
78
ILE
76
B
VAL
77
n
79
VAL
77
B
LEU
78
n
80
LEU
78
B
SER
79
n
81
SER
79
B
ALA
80
n
82
ALA
80
B
ARG
81
n
83
ARG
81
B
SER
82
n
84
SER
82
B
GLU
83
n
85
GLU
83
B
GLU
84
n
86
GLU
84
B
SER
85
n
87
SER
85
B
ASP
86
n
88
ASP
86
B
LYS
87
n
89
LYS
87
B
ILE
88
n
90
ILE
88
B
ALA
89
n
91
ALA
89
B
ALA
90
n
92
ALA
90
B
LEU
91
n
93
LEU
91
B
ASP
92
n
94
ASP
92
B
ALA
93
n
95
ALA
93
B
GLY
94
n
96
GLY
94
B
ALA
95
n
97
ALA
95
B
ASP
96
n
98
ASP
96
B
ASP
97
n
99
ASP
97
B
TYR
98
n
100
TYR
98
B
LEU
99
n
101
LEU
99
B
SER
100
n
102
SER
100
B
LYS
101
n
103
LYS
101
B
PRO
102
n
104
PRO
102
B
PHE
103
n
105
PHE
103
B
GLY
104
n
106
GLY
104
B
ILE
105
n
107
ILE
105
B
GLY
106
n
108
GLY
106
B
GLU
107
n
109
GLU
107
B
LEU
108
n
110
LEU
108
B
GLN
109
n
111
GLN
109
B
ALA
110
n
112
ALA
110
B
ARG
111
n
113
ARG
111
B
LEU
112
n
114
LEU
112
B
ARG
113
n
115
ARG
113
B
VAL
114
n
116
VAL
114
B
ALA
115
n
117
ALA
115
B
LEU
116
n
118
LEU
116
B
ARG
117
n
119
ARG
117
B
ARG
118
n
120
ARG
118
B
HIS
119
n
121
HIS
119
B
SER
120
n
122
SER
120
B
n
123
121
B
n
124
122
B
GLY
123
n
125
THR
123
B
GLY
124
n
126
ALA
124
B
PRO
125
n
127
PRO
125
B
ASP
126
n
128
ASP
126
B
PRO
127
n
129
PRO
127
B
LEU
128
n
130
LEU
128
B
VAL
129
n
131
VAL
129
B
LYS
130
n
132
LYS
130
B
PHE
131
n
133
PHE
131
B
SER
132
n
134
SER
132
B
ASP
133
n
135
ASP
133
B
VAL
134
n
136
VAL
134
B
THR
135
n
137
THR
135
B
VAL
136
n
138
VAL
136
B
ASP
137
n
139
ASP
137
B
LEU
138
n
140
LEU
138
B
ALA
139
n
141
ALA
139
B
ALA
140
n
142
ALA
140
B
ARG
141
n
143
ARG
141
B
VAL
142
n
144
VAL
142
B
ILE
143
n
145
ILE
143
B
HIS
144
n
146
HIS
144
B
ARG
145
n
147
ARG
145
B
GLY
146
n
148
GLY
146
B
GLU
147
n
149
GLU
147
B
GLU
148
n
150
GLU
148
B
GLU
149
n
151
GLU
149
B
VAL
150
n
152
VAL
150
B
HIS
151
n
153
HIS
151
B
LEU
152
n
154
LEU
152
B
THR
153
n
155
THR
153
B
PRO
154
n
156
PRO
154
B
ILE
155
n
157
ILE
155
B
GLU
156
n
158
GLU
156
B
PHE
157
n
159
PHE
157
B
ARG
158
n
160
ARG
158
B
LEU
159
n
161
LEU
159
B
LEU
160
n
162
LEU
160
B
ALA
161
n
163
ALA
161
B
VAL
162
n
164
VAL
162
B
LEU
163
n
165
LEU
163
B
LEU
164
n
166
LEU
164
B
ASN
165
n
167
ASN
165
B
ASN
166
n
168
ASN
166
B
ALA
167
n
169
ALA
167
B
GLY
168
n
170
GLY
168
B
LYS
169
n
171
LYS
169
B
VAL
170
n
172
VAL
170
B
LEU
171
n
173
LEU
171
B
THR
172
n
174
THR
172
B
GLN
173
n
175
GLN
173
B
ARG
174
n
176
ARG
174
B
GLN
175
n
177
GLN
175
B
LEU
176
n
178
LEU
176
B
LEU
177
n
179
LEU
177
B
ASN
178
n
180
ASN
178
B
GLN
179
n
181
GLN
179
B
VAL
180
n
182
VAL
180
B
TRP
181
n
183
TRP
181
B
GLY
182
n
184
GLY
182
B
PRO
183
n
185
PRO
183
B
ASN
184
n
186
ASN
184
B
ALA
185
n
187
ALA
185
B
VAL
186
n
188
VAL
186
B
GLU
187
n
189
GLU
187
B
HIS
188
n
190
HIS
188
B
SER
189
n
191
SER
189
B
HIS
190
n
192
HIS
190
B
TYR
191
n
193
TYR
191
B
LEU
192
n
194
LEU
192
B
ARG
193
n
195
ARG
193
B
ILE
194
n
196
ILE
194
B
TYR
195
n
197
TYR
195
B
MET
196
n
198
MET
196
B
GLY
197
n
199
GLY
197
B
HIS
198
n
200
HIS
198
B
LEU
199
n
201
LEU
199
B
ARG
200
n
202
ARG
200
B
GLN
201
n
203
GLN
201
B
LYS
202
n
204
LYS
202
B
LEU
203
n
205
LEU
203
B
GLU
204
n
206
GLU
204
B
GLN
205
n
207
GLN
205
B
ASP
206
n
208
ASP
206
B
PRO
207
n
209
PRO
207
B
ALA
208
n
210
ALA
208
B
ARG
209
n
211
ARG
209
B
PRO
210
n
212
PRO
210
B
ARG
211
n
213
ARG
211
B
HIS
212
n
214
HIS
212
B
PHE
213
n
215
PHE
213
B
ILE
214
n
216
ILE
214
B
THR
215
n
217
THR
215
B
ALA
216
n
218
ALA
216
B
THR
217
n
219
THR
217
B
GLY
218
n
220
GLY
218
B
ILE
219
n
221
ILE
219
B
GLY
220
n
222
GLY
220
B
TYR
221
n
223
TYR
221
B
ARG
222
n
224
ARG
222
B
PHE
223
n
225
PHE
223
B
MET
224
n
226
MET
224
B
LEU
225
n
227
LEU
225
B
DC
1
n
1
DC
1
Y
DA
2
n
2
DA
2
Y
DT
3
n
3
DT
3
Y
DT
4
n
4
DT
4
Y
DT
5
n
5
DT
5
Y
DT
6
n
6
DT
6
Y
DT
7
n
7
DT
7
Y
DA
8
n
8
DA
8
Y
DT
9
n
9
DT
9
Y
DA
10
n
10
DA
10
Y
DC
11
n
11
DC
11
Y
DT
12
n
12
DT
12
Y
DT
13
n
13
DT
13
Y
DT
14
n
14
DT
14
Y
DT
15
n
15
DT
15
Y
DT
16
n
16
DT
16
Y
DT
17
n
17
DT
17
Y
DT
18
n
18
DT
18
Y
DA
19
n
19
DA
19
Y
DC
20
n
20
DC
20
Y
DA
21
n
21
DA
21
Y
DC
22
n
22
DC
22
Y
DC
23
n
23
DC
23
Y
DC
24
n
24
DC
24
Y
DC
25
n
25
DC
25
Y
DG
26
n
26
DG
26
Y
DC
27
n
27
DC
27
Y
DC
28
n
28
DC
28
Y
DC
29
n
29
DC
29
Y
DG
30
n
30
DG
30
Y
DC
1
n
1
DC
1
Z
DG
2
n
2
DG
2
Z
DG
3
n
3
DG
3
Z
DG
4
n
4
DG
4
Z
DC
5
n
5
DC
5
Z
DG
6
n
6
DG
6
Z
DG
7
n
7
DG
7
Z
DG
8
n
8
DG
8
Z
DG
9
n
9
DG
9
Z
DT
10
n
10
DT
10
Z
DG
11
n
11
DG
11
Z
DT
12
n
12
DT
12
Z
DA
13
n
13
DA
13
Z
DA
14
n
14
DA
14
Z
DA
15
n
15
DA
15
Z
DA
16
n
16
DA
16
Z
DA
17
n
17
DA
17
Z
DA
18
n
18
DA
18
Z
DA
19
n
19
DA
19
Z
DG
20
n
20
DG
20
Z
DT
21
n
21
DT
21
Z
DA
22
n
22
DA
22
Z
DT
23
n
23
DT
23
Z
DA
24
n
24
DA
24
Z
DA
25
n
25
DA
25
Z
DA
26
n
26
DA
26
Z
DA
27
n
27
DA
27
Z
DA
28
n
28
DA
28
Z
DT
29
n
29
DT
29
Z
DG
30
n
30
DG
30
Z
author_and_software_defined_assembly
PISA
4
tetrameric
8020
-55
30430
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
PHE
29
A
O
PHE
31
A
N
ILE
6
A
N
ILE
8
A
N
VAL
7
A
N
VAL
9
A
O
ILE
50
A
O
ILE
52
A
N
ILE
49
A
N
ILE
51
A
O
ILE
76
A
O
ILE
78
A
N
VAL
77
A
N
VAL
79
A
O
LEU
99
A
O
LEU
101
A
N
PHE
131
A
N
PHE
133
A
O
VAL
134
A
O
VAL
136
A
N
THR
135
A
N
THR
137
A
O
HIS
144
A
O
HIS
146
A
N
ARG
145
A
N
ARG
147
A
O
GLU
148
A
O
GLU
150
A
N
LEU
171
A
N
LEU
173
A
O
TYR
221
A
O
TYR
223
A
O
GLY
220
A
O
GLY
222
A
N
ALA
216
A
N
ALA
218
B
O
ARG
27
B
O
ARG
29
B
N
VAL
4
B
N
VAL
6
B
N
VAL
7
B
N
VAL
9
B
O
ILE
50
B
O
ILE
52
B
N
ILE
49
B
N
ILE
51
B
O
ILE
76
B
O
ILE
78
B
N
VAL
77
B
N
VAL
79
B
O
LEU
99
B
O
LEU
101
B
N
VAL
129
B
N
VAL
131
B
O
VAL
136
B
O
VAL
138
B
N
THR
135
B
N
THR
137
B
O
HIS
144
B
O
HIS
146
B
N
ARG
145
B
N
ARG
147
B
O
GLU
148
B
O
GLU
150
B
N
LEU
171
B
N
LEU
173
B
O
TYR
221
B
O
TYR
223
B
O
ARG
222
B
O
ARG
224
B
N
ILE
214
B
N
ILE
216
1
B
CB
THR
123
B
CB
THR
125
1
Y
1
B
OG1
THR
123
B
OG1
THR
125
1
Y
1
B
CG2
THR
123
B
CG2
THR
125
1
Y
1
B
CB
ALA
124
B
CB
ALA
126
1
Y
1
A
GLY
-1
A
GLY
1
1
Y
1
A
ALA
121
A
ALA
123
1
Y
1
A
THR
122
A
THR
124
1
Y
1
A
THR
123
A
THR
125
1
Y
1
B
GLY
-1
B
GLY
1
1
Y
1
B
ALA
121
B
ALA
123
1
Y
1
B
THR
122
B
THR
124
1
Y
1
2.27
0.30
108.30
110.57
Y
Y
Y
O4'
C1'
N1
DT
DT
DT
3
3
3
N
1
2.54
0.30
108.30
110.84
Y
Y
Y
O4'
C1'
N1
DT
DT
DT
9
9
9
N
1
2.15
0.30
108.30
110.45
Y
Y
Y
O4'
C1'
N1
DT
DT
DT
18
18
18
N
1
2.62
0.30
108.30
110.92
Y
Y
Y
O4'
C1'
N9
DA
DA
DA
19
19
19
N
1
2.32
0.30
108.30
110.62
Y
Y
Y
O4'
C1'
N1
DC
DC
DC
20
20
20
N
1
2.89
0.30
108.30
111.19
Y
Y
Y
O4'
C1'
N1
DC
DC
DC
23
23
23
N
1
-5.09
0.80
102.40
97.31
Y
Y
Y
C3'
C2'
C1'
DC
DC
DC
24
24
24
N
1
2.78
0.30
108.30
111.08
Y
Y
Y
O4'
C1'
N1
DC
DC
DC
24
24
24
N
1
3.03
0.30
108.30
111.33
Z
Z
Z
O4'
C1'
N9
DG
DG
DG
9
9
9
N
1
4.15
0.30
108.30
112.45
Z
Z
Z
O4'
C1'
N1
DT
DT
DT
10
10
10
N
1
2.30
0.30
108.30
110.60
Z
Z
Z
O4'
C1'
N9
DG
DG
DG
20
20
20
N
1
2.45
0.30
108.30
110.75
Z
Z
Z
O4'
C1'
N9
DG
DG
DG
30
30
30
N
1
A
TRP
70
-141.83
-20.67
1
A
HIS
119
-66.37
71.71
1
A
SER
132
55.04
-118.78
1
A
ILE
219
-120.16
-67.28
1
B
HIS
119
-106.25
62.06
1
B
ALA
124
88.34
89.12
1
B
SER
132
52.61
-129.89
1
B
SER
189
-67.19
14.53
0.2450
0.2038
0.2080
2.530
44.320
4013
40355
40336
9.95
99.07
0.31
Random
1
1.33
MOLECULAR REPLACEMENT
25.02
0.90
1.11
1ZH4 and 3ZQ7
ML
FLAT BULK SOLVENT MODEL
2.530
44.320
148
4911
0
1224
3539
0.004
4973
0.928
6985
20.739
1953
0.054
791
0.003
699
0.3862
0.2952
2.5598
129
1247
100.00
0.2943
0.2693
2.5910
136
1257
100.00
0.3232
0.2544
2.6238
143
1240
100.00
0.2790
0.2530
2.6583
137
1240
100.00
0.3198
0.2435
2.6947
141
1224
100.00
0.2729
0.2386
2.7332
136
1237
100.00
0.3267
0.2572
2.7740
140
1244
100.00
0.3074
0.2374
2.8173
137
1258
100.00
0.3228
0.2390
2.8635
135
1248
100.00
0.3164
0.2487
2.9129
142
1242
100.00
0.2871
0.2480
2.9658
131
1241
100.00
0.3506
0.2611
3.0229
140
1245
100.00
0.2959
0.2585
3.0845
136
1256
100.00
0.3241
0.2579
3.1516
143
1252
100.00
0.2950
0.2410
3.2249
138
1249
100.00
0.2671
0.2331
3.3055
140
1245
100.00
0.2681
0.2262
3.3948
139
1262
100.00
0.2673
0.2185
3.4947
141
1258
100.00
0.2311
0.2107
3.6075
133
1260
100.00
0.2617
0.1955
3.7363
134
1259
100.00
0.2362
0.1945
3.8858
145
1259
100.00
0.2228
0.1830
4.0626
138
1274
100.00
0.2026
0.1637
4.2766
140
1278
100.00
0.1787
0.1596
4.5443
143
1270
100.00
0.2004
0.1595
4.8948
140
1280
100.00
0.2264
0.1809
5.3866
146
1296
100.00
0.2394
0.1974
6.1642
140
1295
100.00
0.2210
0.1951
7.7595
148
1319
100.00
0.1991
0.1925
44.3268
122
1088
77.00
2.53
44.43
4KFC
40355
40336
0
0
0.11
1
13.48
12
99.95
0.49
2.53
2.62
4.4
40355
1
12.2
100
data reduction
MOSFLM
phasing
PHASER
refinement
PHENIX
(phenix.refine: dev_1352)
data scaling
SCALA
Crystal structure of a hyperactive mutant of response regulator KdpE complexed to its promoter DNA
1
N
N
1
N
N
2
N
N
3
N
N
4
N
N
4
N
N
4
N
N
4
N
N
The present structures with two protein molecules bound to dsDNA, represents the biological assemble.
A
GLU
10
A
GLU
12
HELX_P
A
ASP
24
A
ASP
26
1
1
15
A
THR
33
A
THR
35
HELX_P
A
LYS
45
A
LYS
47
1
2
13
A
ASP
59
A
ASP
61
HELX_P
A
GLN
69
A
GLN
71
1
3
11
A
GLU
83
A
GLU
85
HELX_P
A
GLY
94
A
GLY
96
1
4
12
A
GLY
104
A
GLY
106
HELX_P
A
HIS
119
A
HIS
121
1
5
16
A
THR
153
A
THR
155
HELX_P
A
ASN
166
A
ASN
168
1
6
14
A
GLN
173
A
GLN
175
HELX_P
A
TRP
181
A
TRP
183
1
7
9
A
GLY
182
A
GLY
184
HELX_P
A
VAL
186
A
VAL
188
5
8
5
A
HIS
188
A
HIS
190
HELX_P
A
GLU
204
A
GLU
206
1
9
17
B
GLU
10
B
GLU
12
HELX_P
B
GLY
23
B
GLY
25
1
10
14
B
THR
33
B
THR
35
HELX_P
B
ARG
44
B
ARG
46
1
11
12
B
ASP
59
B
ASP
61
HELX_P
B
ARG
68
B
ARG
70
1
12
10
B
GLU
83
B
GLU
85
HELX_P
B
GLY
94
B
GLY
96
1
13
12
B
GLY
104
B
GLY
106
HELX_P
B
ARG
117
B
ARG
119
1
14
14
B
ARG
118
B
ARG
120
HELX_P
B
SER
120
B
SER
122
5
15
3
B
THR
153
B
THR
155
HELX_P
B
ASN
165
B
ASN
167
1
16
13
B
GLN
173
B
GLN
175
HELX_P
B
TRP
181
B
TRP
183
1
17
9
B
GLY
182
B
GLY
184
HELX_P
B
VAL
186
B
VAL
188
5
18
5
B
HIS
190
B
HIS
192
HELX_P
B
GLU
204
B
GLU
206
1
19
15
hydrog
WATSON-CRICK
Y
DC
1
C
N3
DC
1
1_555
Z
DG
30
D
N1
DG
30
1_555
hydrog
WATSON-CRICK
Y
DC
1
C
N4
DC
1
1_555
Z
DG
30
D
O6
DG
30
1_555
hydrog
WATSON-CRICK
Y
DC
1
C
O2
DC
1
1_555
Z
DG
30
D
N2
DG
30
1_555
hydrog
WATSON-CRICK
Y
DA
2
C
N1
DA
2
1_555
Z
DT
29
D
N3
DT
29
1_555
hydrog
WATSON-CRICK
Y
DA
2
C
N6
DA
2
1_555
Z
DT
29
D
O4
DT
29
1_555
hydrog
WATSON-CRICK
Y
DT
3
C
N3
DT
3
1_555
Z
DA
28
D
N1
DA
28
1_555
hydrog
WATSON-CRICK
Y
DT
3
C
O4
DT
3
1_555
Z
DA
28
D
N6
DA
28
1_555
hydrog
WATSON-CRICK
Y
DT
4
C
N3
DT
4
1_555
Z
DA
27
D
N1
DA
27
1_555
hydrog
WATSON-CRICK
Y
DT
4
C
O4
DT
4
1_555
Z
DA
27
D
N6
DA
27
1_555
hydrog
WATSON-CRICK
Y
DT
5
C
N3
DT
5
1_555
Z
DA
26
D
N1
DA
26
1_555
hydrog
WATSON-CRICK
Y
DT
5
C
O4
DT
5
1_555
Z
DA
26
D
N6
DA
26
1_555
hydrog
WATSON-CRICK
Y
DT
6
C
N3
DT
6
1_555
Z
DA
25
D
N1
DA
25
1_555
hydrog
WATSON-CRICK
Y
DT
6
C
O4
DT
6
1_555
Z
DA
25
D
N6
DA
25
1_555
hydrog
WATSON-CRICK
Y
DT
7
C
N3
DT
7
1_555
Z
DA
24
D
N1
DA
24
1_555
hydrog
WATSON-CRICK
Y
DT
7
C
O4
DT
7
1_555
Z
DA
24
D
N6
DA
24
1_555
hydrog
WATSON-CRICK
Y
DA
8
C
N1
DA
8
1_555
Z
DT
23
D
N3
DT
23
1_555
hydrog
WATSON-CRICK
Y
DA
8
C
N6
DA
8
1_555
Z
DT
23
D
O4
DT
23
1_555
hydrog
WATSON-CRICK
Y
DT
9
C
N3
DT
9
1_555
Z
DA
22
D
N1
DA
22
1_555
hydrog
WATSON-CRICK
Y
DT
9
C
O4
DT
9
1_555
Z
DA
22
D
N6
DA
22
1_555
hydrog
WATSON-CRICK
Y
DA
10
C
N1
DA
10
1_555
Z
DT
21
D
N3
DT
21
1_555
hydrog
WATSON-CRICK
Y
DA
10
C
N6
DA
10
1_555
Z
DT
21
D
O4
DT
21
1_555
hydrog
WATSON-CRICK
Y
DC
11
C
N3
DC
11
1_555
Z
DG
20
D
N1
DG
20
1_555
hydrog
WATSON-CRICK
Y
DC
11
C
N4
DC
11
1_555
Z
DG
20
D
O6
DG
20
1_555
hydrog
WATSON-CRICK
Y
DC
11
C
O2
DC
11
1_555
Z
DG
20
D
N2
DG
20
1_555
hydrog
WATSON-CRICK
Y
DT
12
C
N3
DT
12
1_555
Z
DA
19
D
N1
DA
19
1_555
hydrog
WATSON-CRICK
Y
DT
12
C
O4
DT
12
1_555
Z
DA
19
D
N6
DA
19
1_555
hydrog
WATSON-CRICK
Y
DT
13
C
N3
DT
13
1_555
Z
DA
18
D
N1
DA
18
1_555
hydrog
WATSON-CRICK
Y
DT
13
C
O4
DT
13
1_555
Z
DA
18
D
N6
DA
18
1_555
hydrog
WATSON-CRICK
Y
DT
14
C
N3
DT
14
1_555
Z
DA
17
D
N1
DA
17
1_555
hydrog
WATSON-CRICK
Y
DT
14
C
O4
DT
14
1_555
Z
DA
17
D
N6
DA
17
1_555
hydrog
DT-DA PAIR
Y
DT
15
C
N3
DT
15
1_555
Z
DA
16
D
N1
DA
16
1_555
hydrog
DT-DA PAIR
Y
DT
16
C
N3
DT
16
1_555
Z
DA
15
D
N1
DA
15
1_555
hydrog
WATSON-CRICK
Y
DT
17
C
N3
DT
17
1_555
Z
DA
14
D
N1
DA
14
1_555
hydrog
WATSON-CRICK
Y
DT
17
C
O4
DT
17
1_555
Z
DA
14
D
N6
DA
14
1_555
hydrog
WATSON-CRICK
Y
DT
18
C
N3
DT
18
1_555
Z
DA
13
D
N1
DA
13
1_555
hydrog
WATSON-CRICK
Y
DT
18
C
O4
DT
18
1_555
Z
DA
13
D
N6
DA
13
1_555
hydrog
WATSON-CRICK
Y
DA
19
C
N1
DA
19
1_555
Z
DT
12
D
N3
DT
12
1_555
hydrog
WATSON-CRICK
Y
DA
19
C
N6
DA
19
1_555
Z
DT
12
D
O4
DT
12
1_555
hydrog
DC-DG PAIR
Y
DC
20
C
O2
DC
20
1_555
Z
DG
11
D
N2
DG
11
1_555
hydrog
DA-DT PAIR
Y
DA
21
C
N1
DA
21
1_555
Z
DT
10
D
N3
DT
10
1_555
hydrog
WATSON-CRICK
Y
DC
22
C
N3
DC
22
1_555
Z
DG
9
D
N1
DG
9
1_555
hydrog
WATSON-CRICK
Y
DC
22
C
N4
DC
22
1_555
Z
DG
9
D
O6
DG
9
1_555
hydrog
WATSON-CRICK
Y
DC
22
C
O2
DC
22
1_555
Z
DG
9
D
N2
DG
9
1_555
hydrog
DC-DG PAIR
Y
DC
23
C
N4
DC
23
1_555
Z
DG
8
D
O6
DG
8
1_555
hydrog
DC-DG PAIR
Y
DC
24
C
N4
DC
24
1_555
Z
DG
7
D
O6
DG
7
1_555
hydrog
WATSON-CRICK
Y
DC
25
C
N3
DC
25
1_555
Z
DG
6
D
N1
DG
6
1_555
hydrog
WATSON-CRICK
Y
DC
25
C
N4
DC
25
1_555
Z
DG
6
D
O6
DG
6
1_555
hydrog
WATSON-CRICK
Y
DC
25
C
O2
DC
25
1_555
Z
DG
6
D
N2
DG
6
1_555
hydrog
WATSON-CRICK
Y
DG
26
C
N1
DG
26
1_555
Z
DC
5
D
N3
DC
5
1_555
hydrog
WATSON-CRICK
Y
DG
26
C
N2
DG
26
1_555
Z
DC
5
D
O2
DC
5
1_555
hydrog
WATSON-CRICK
Y
DG
26
C
O6
DG
26
1_555
Z
DC
5
D
N4
DC
5
1_555
hydrog
DC-DG PAIR
Y
DC
27
C
O2
DC
27
1_555
Z
DG
4
D
N1
DG
4
1_555
hydrog
DC-DG PAIR
Y
DC
28
C
N4
DC
28
1_555
Z
DG
3
D
O6
DG
3
1_555
hydrog
DC-DG PAIR
Y
DC
29
C
O2
DC
29
1_555
Z
DG
2
D
N2
DG
2
1_555
hydrog
DG-DC PAIR
Y
DG
30
C
N1
DG
30
1_555
Z
DC
1
D
O2
DC
1
1_555
TRANSCRIPTION REGULATOR/DNA
receiver domain, DNA-binding domain, TRANSCRIPTION REGULATOR-DNA complex
A
LYS
101
A
LYS
103
1
A
PRO
102
A
PRO
104
0.50
B
LYS
101
B
LYS
103
1
B
PRO
102
B
PRO
104
3.55
KDPE_ECOLI
UNP
1
3
P21866
NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEFIRDLRQWSAVPVIVLSARS
EESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAV
LLNNAGKVLTQRQLLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFML
4KFC
PDB
2
4KFC
4KFC
PDB
3
4KFC
3
225
4KFC
3
225
P21866
A
1
5
227
3
225
4KFC
3
225
P21866
B
1
5
227
1
30
4KFC
1
30
4KFC
Y
2
1
30
1
30
4KFC
1
30
4KFC
Z
3
1
30
1
expression tag
GLY
-1
4KFC
A
P21866
UNP
1
1
expression tag
ALA
0
4KFC
A
P21866
UNP
2
1
expression tag
MET
1
4KFC
A
P21866
UNP
3
1
expression tag
ALA
2
4KFC
A
P21866
UNP
4
1
GLU
engineered mutation
ALA
216
4KFC
A
P21866
UNP
216
218
2
expression tag
GLY
-1
4KFC
B
P21866
UNP
1
2
expression tag
ALA
0
4KFC
B
P21866
UNP
2
2
expression tag
MET
1
4KFC
B
P21866
UNP
3
2
expression tag
ALA
2
4KFC
B
P21866
UNP
4
2
GLU
engineered mutation
ALA
216
4KFC
B
P21866
UNP
216
218
5
4
3
5
4
3
parallel
parallel
parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
parallel
parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
ARG
27
A
ARG
29
A
ALA
31
A
ALA
33
A
ASN
3
A
ASN
5
A
VAL
7
A
VAL
9
A
LEU
48
A
LEU
50
A
ASP
52
A
ASP
54
A
VAL
75
A
VAL
77
A
SER
79
A
SER
81
A
ASP
97
A
ASP
99
A
SER
100
A
SER
102
A
VAL
129
A
VAL
131
A
PHE
131
A
PHE
133
A
VAL
134
A
VAL
136
A
ASP
137
A
ASP
139
A
VAL
142
A
VAL
144
A
ARG
145
A
ARG
147
A
GLU
148
A
GLU
150
A
VAL
150
A
VAL
152
A
VAL
170
A
VAL
172
A
THR
172
A
THR
174
A
GLY
220
A
GLY
222
A
PHE
223
A
PHE
225
A
PHE
213
A
PHE
215
A
ALA
216
A
ALA
218
B
MET
26
B
MET
28
B
ALA
31
B
ALA
33
B
ALA
2
B
ALA
4
B
VAL
7
B
VAL
9
B
LEU
48
B
LEU
50
B
ASP
52
B
ASP
54
B
VAL
75
B
VAL
77
B
SER
79
B
SER
81
B
ASP
97
B
ASP
99
B
SER
100
B
SER
102
B
VAL
129
B
VAL
131
B
PHE
131
B
PHE
133
B
VAL
134
B
VAL
136
B
ASP
137
B
ASP
139
B
VAL
142
B
VAL
144
B
ARG
145
B
ARG
147
B
GLU
148
B
GLU
150
B
VAL
150
B
VAL
152
B
VAL
170
B
VAL
172
B
THR
172
B
THR
174
B
GLY
220
B
GLY
222
B
PHE
223
B
PHE
225
B
PHE
213
B
PHE
215
B
ALA
216
B
ALA
218
96
P 43 21 2