0.011204
0.000000
0.000000
-0.000000
0.011204
0.000000
0.000000
-0.000000
0.007840
0.000000
0.000000
0.000000
Sampathkumar, P.
Almo, S.C.
New York Structural Genomics Research Consortium (NYSGRC)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
16
90.000
90.000
90.000
89.252
89.252
127.545
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C2 H6 O2
62.068
1,2-ETHANEDIOL
ETHYLENE GLYCOL
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C3 H8 O3
92.094
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 Se
196.106
n
SELENOMETHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
to be published
0353
Crystal structure of a putative methylthioadenosine nucleosidase from Weissella paramesenteroides ATCC 33313 (Target NYSGRC-029342)
100
1
MIRRORS
CCD
2013-03-29
RAYONIX MX225HE
Diamond(111)
SINGLE WAVELENGTH
M
x-ray
1
0.979310
1.0
31-ID
APS
0.979310
SYNCHROTRON
APS BEAMLINE 31-ID
27436.584
Methylthioadenosine nucleosidase
3.2.2.16
2
man
polymer
62.068
1,2-ETHANEDIOL
4
syn
non-polymer
92.094
GLYCEROL
1
syn
non-polymer
18.015
water
239
nat
water
no
yes
(MSE)HHHHHHSSGVDLGTENLYFQS(MSE)RYGVINA(MSE)AEEKAALVDA(MSE)IDEKKTTIAGKLFHHGKIGHVD
VVVVESGIGKVASALTTTLLITNFGVDAVINSGSAGALGTDLRIGDIVIADYLAYADADARAFGYAYGQVPQQPARFKAD
TDLSNDLSESYEKVTDARLVRGLVVTSDSFIASNEQKQTILTHFPEAQSAE(MSE)EGASIAQVANYFDVPFAVVRAISD
NANGEAG(MSE)TFDDFIVEAGQQSAQVLINFFEAQA
MHHHHHHSSGVDLGTENLYFQSMRYGVINAMAEEKAALVDAMIDEKKTTIAGKLFHHGKIGHVDVVVVESGIGKVASALT
TTLLITNFGVDAVINSGSAGALGTDLRIGDIVIADYLAYADADARAFGYAYGQVPQQPARFKADTDLSNDLSESYEKVTD
ARLVRGLVVTSDSFIASNEQKQTILTHFPEAQSAEMEGASIAQVANYFDVPFAVVRAISDNANGEAGMTFDDFIVEAGQQ
SAQVLINFFEAQA
A,B
NYSGRC-029342
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
ATCC 33313
sample
HMPREF0877_0999
585506
Weissella paramesenteroides
469008
Escherichia coli
BL21(DE3) RIL
plasmid
pSGC-His
1
2.31
46.86
VAPOR DIFFUSION, SITTING DROP
7.5
Protein (20mM HEPES pH7.5, 150mM NaCl, 5% glycerol, and 5mM DTT); Reservoir (MCSG3 #47: 0.1 M HEPES:NaOH pH 7.5, 0.8 M NaH2PO4, 0.8 M KH2PO4 ); Cryoprotection (33% Ethylene glycol), VAPOR DIFFUSION, SITTING DROP, temperature 298K
298
New York Structural Genomics Research Consortium
NYSGRC
PSI:Biology
software
repository
Initial release
Structure summary
Refinement description
1
0
2013-05-29
1
1
2013-11-27
1
2
2017-11-15
_software.classification
_software.name
Y
RCSB
Y
RCSB
2013-05-08
REL
REL
EDO
1,2-ETHANEDIOL
GOL
GLYCEROL
HOH
water
EDO
2
2
EDO
EDO
301
A
EDO
1
2
EDO
EDO
301
B
EDO
3
2
EDO
EDO
302
B
EDO
4
2
EDO
EDO
303
B
GOL
1
3
GOL
GOL
304
B
HOH
2
4
HOH
HOH
401
A
HOH
5
4
HOH
HOH
402
A
HOH
7
4
HOH
HOH
403
A
HOH
8
4
HOH
HOH
404
A
HOH
9
4
HOH
HOH
405
A
HOH
13
4
HOH
HOH
406
A
HOH
14
4
HOH
HOH
407
A
HOH
16
4
HOH
HOH
408
A
HOH
19
4
HOH
HOH
409
A
HOH
21
4
HOH
HOH
410
A
HOH
22
4
HOH
HOH
411
A
HOH
25
4
HOH
HOH
412
A
HOH
26
4
HOH
HOH
413
A
HOH
30
4
HOH
HOH
414
A
HOH
31
4
HOH
HOH
415
A
HOH
32
4
HOH
HOH
416
A
HOH
35
4
HOH
HOH
417
A
HOH
42
4
HOH
HOH
418
A
HOH
43
4
HOH
HOH
419
A
HOH
45
4
HOH
HOH
420
A
HOH
46
4
HOH
HOH
421
A
HOH
48
4
HOH
HOH
422
A
HOH
51
4
HOH
HOH
423
A
HOH
53
4
HOH
HOH
424
A
HOH
55
4
HOH
HOH
425
A
HOH
56
4
HOH
HOH
426
A
HOH
57
4
HOH
HOH
427
A
HOH
59
4
HOH
HOH
428
A
HOH
60
4
HOH
HOH
429
A
HOH
64
4
HOH
HOH
430
A
HOH
65
4
HOH
HOH
431
A
HOH
67
4
HOH
HOH
432
A
HOH
68
4
HOH
HOH
433
A
HOH
69
4
HOH
HOH
434
A
HOH
70
4
HOH
HOH
435
A
HOH
72
4
HOH
HOH
436
A
HOH
76
4
HOH
HOH
437
A
HOH
79
4
HOH
HOH
438
A
HOH
83
4
HOH
HOH
439
A
HOH
86
4
HOH
HOH
440
A
HOH
87
4
HOH
HOH
441
A
HOH
88
4
HOH
HOH
442
A
HOH
89
4
HOH
HOH
443
A
HOH
91
4
HOH
HOH
444
A
HOH
92
4
HOH
HOH
445
A
HOH
94
4
HOH
HOH
446
A
HOH
96
4
HOH
HOH
447
A
HOH
101
4
HOH
HOH
448
A
HOH
102
4
HOH
HOH
449
A
HOH
106
4
HOH
HOH
450
A
HOH
107
4
HOH
HOH
451
A
HOH
110
4
HOH
HOH
452
A
HOH
111
4
HOH
HOH
453
A
HOH
113
4
HOH
HOH
454
A
HOH
114
4
HOH
HOH
455
A
HOH
115
4
HOH
HOH
456
A
HOH
120
4
HOH
HOH
457
A
HOH
122
4
HOH
HOH
458
A
HOH
123
4
HOH
HOH
459
A
HOH
125
4
HOH
HOH
460
A
HOH
126
4
HOH
HOH
461
A
HOH
127
4
HOH
HOH
462
A
HOH
128
4
HOH
HOH
463
A
HOH
129
4
HOH
HOH
464
A
HOH
131
4
HOH
HOH
465
A
HOH
133
4
HOH
HOH
466
A
HOH
137
4
HOH
HOH
467
A
HOH
138
4
HOH
HOH
468
A
HOH
141
4
HOH
HOH
469
A
HOH
142
4
HOH
HOH
470
A
HOH
143
4
HOH
HOH
471
A
HOH
144
4
HOH
HOH
472
A
HOH
146
4
HOH
HOH
473
A
HOH
147
4
HOH
HOH
474
A
HOH
148
4
HOH
HOH
475
A
HOH
149
4
HOH
HOH
476
A
HOH
150
4
HOH
HOH
477
A
HOH
151
4
HOH
HOH
478
A
HOH
153
4
HOH
HOH
479
A
HOH
155
4
HOH
HOH
480
A
HOH
157
4
HOH
HOH
481
A
HOH
159
4
HOH
HOH
482
A
HOH
160
4
HOH
HOH
483
A
HOH
161
4
HOH
HOH
484
A
HOH
162
4
HOH
HOH
485
A
HOH
163
4
HOH
HOH
486
A
HOH
164
4
HOH
HOH
487
A
HOH
165
4
HOH
HOH
488
A
HOH
168
4
HOH
HOH
489
A
HOH
171
4
HOH
HOH
490
A
HOH
174
4
HOH
HOH
491
A
HOH
178
4
HOH
HOH
492
A
HOH
179
4
HOH
HOH
493
A
HOH
180
4
HOH
HOH
494
A
HOH
183
4
HOH
HOH
495
A
HOH
184
4
HOH
HOH
496
A
HOH
187
4
HOH
HOH
497
A
HOH
189
4
HOH
HOH
498
A
HOH
190
4
HOH
HOH
499
A
HOH
191
4
HOH
HOH
500
A
HOH
192
4
HOH
HOH
501
A
HOH
193
4
HOH
HOH
502
A
HOH
196
4
HOH
HOH
503
A
HOH
198
4
HOH
HOH
504
A
HOH
199
4
HOH
HOH
505
A
HOH
204
4
HOH
HOH
506
A
HOH
205
4
HOH
HOH
507
A
HOH
206
4
HOH
HOH
508
A
HOH
207
4
HOH
HOH
509
A
HOH
210
4
HOH
HOH
510
A
HOH
211
4
HOH
HOH
511
A
HOH
213
4
HOH
HOH
512
A
HOH
215
4
HOH
HOH
513
A
HOH
216
4
HOH
HOH
514
A
HOH
217
4
HOH
HOH
515
A
HOH
219
4
HOH
HOH
516
A
HOH
220
4
HOH
HOH
517
A
HOH
221
4
HOH
HOH
518
A
HOH
222
4
HOH
HOH
519
A
HOH
224
4
HOH
HOH
520
A
HOH
225
4
HOH
HOH
521
A
HOH
226
4
HOH
HOH
522
A
HOH
227
4
HOH
HOH
523
A
HOH
231
4
HOH
HOH
524
A
HOH
232
4
HOH
HOH
525
A
HOH
233
4
HOH
HOH
526
A
HOH
234
4
HOH
HOH
527
A
HOH
235
4
HOH
HOH
528
A
HOH
237
4
HOH
HOH
529
A
HOH
1
4
HOH
HOH
401
B
HOH
3
4
HOH
HOH
402
B
HOH
4
4
HOH
HOH
403
B
HOH
6
4
HOH
HOH
404
B
HOH
10
4
HOH
HOH
405
B
HOH
11
4
HOH
HOH
406
B
HOH
12
4
HOH
HOH
407
B
HOH
15
4
HOH
HOH
408
B
HOH
17
4
HOH
HOH
409
B
HOH
18
4
HOH
HOH
410
B
HOH
20
4
HOH
HOH
411
B
HOH
23
4
HOH
HOH
412
B
HOH
24
4
HOH
HOH
413
B
HOH
27
4
HOH
HOH
414
B
HOH
28
4
HOH
HOH
415
B
HOH
29
4
HOH
HOH
416
B
HOH
33
4
HOH
HOH
417
B
HOH
34
4
HOH
HOH
418
B
HOH
36
4
HOH
HOH
419
B
HOH
37
4
HOH
HOH
420
B
HOH
38
4
HOH
HOH
421
B
HOH
39
4
HOH
HOH
422
B
HOH
40
4
HOH
HOH
423
B
HOH
41
4
HOH
HOH
424
B
HOH
44
4
HOH
HOH
425
B
HOH
47
4
HOH
HOH
426
B
HOH
49
4
HOH
HOH
427
B
HOH
50
4
HOH
HOH
428
B
HOH
52
4
HOH
HOH
429
B
HOH
54
4
HOH
HOH
430
B
HOH
58
4
HOH
HOH
431
B
HOH
61
4
HOH
HOH
432
B
HOH
62
4
HOH
HOH
433
B
HOH
63
4
HOH
HOH
434
B
HOH
66
4
HOH
HOH
435
B
HOH
71
4
HOH
HOH
436
B
HOH
73
4
HOH
HOH
437
B
HOH
74
4
HOH
HOH
438
B
HOH
75
4
HOH
HOH
439
B
HOH
77
4
HOH
HOH
440
B
HOH
78
4
HOH
HOH
441
B
HOH
80
4
HOH
HOH
442
B
HOH
81
4
HOH
HOH
443
B
HOH
82
4
HOH
HOH
444
B
HOH
84
4
HOH
HOH
445
B
HOH
85
4
HOH
HOH
446
B
HOH
90
4
HOH
HOH
447
B
HOH
93
4
HOH
HOH
448
B
HOH
95
4
HOH
HOH
449
B
HOH
97
4
HOH
HOH
450
B
HOH
98
4
HOH
HOH
451
B
HOH
99
4
HOH
HOH
452
B
HOH
100
4
HOH
HOH
453
B
HOH
103
4
HOH
HOH
454
B
HOH
104
4
HOH
HOH
455
B
HOH
105
4
HOH
HOH
456
B
HOH
108
4
HOH
HOH
457
B
HOH
109
4
HOH
HOH
458
B
HOH
112
4
HOH
HOH
459
B
HOH
116
4
HOH
HOH
460
B
HOH
117
4
HOH
HOH
461
B
HOH
118
4
HOH
HOH
462
B
HOH
119
4
HOH
HOH
463
B
HOH
121
4
HOH
HOH
464
B
HOH
124
4
HOH
HOH
465
B
HOH
130
4
HOH
HOH
466
B
HOH
132
4
HOH
HOH
467
B
HOH
134
4
HOH
HOH
468
B
HOH
135
4
HOH
HOH
469
B
HOH
136
4
HOH
HOH
470
B
HOH
139
4
HOH
HOH
471
B
HOH
140
4
HOH
HOH
472
B
HOH
145
4
HOH
HOH
473
B
HOH
152
4
HOH
HOH
474
B
HOH
154
4
HOH
HOH
475
B
HOH
156
4
HOH
HOH
476
B
HOH
158
4
HOH
HOH
477
B
HOH
166
4
HOH
HOH
478
B
HOH
167
4
HOH
HOH
479
B
HOH
169
4
HOH
HOH
480
B
HOH
170
4
HOH
HOH
481
B
HOH
172
4
HOH
HOH
482
B
HOH
173
4
HOH
HOH
483
B
HOH
175
4
HOH
HOH
484
B
HOH
176
4
HOH
HOH
485
B
HOH
177
4
HOH
HOH
486
B
HOH
181
4
HOH
HOH
487
B
HOH
182
4
HOH
HOH
488
B
HOH
185
4
HOH
HOH
489
B
HOH
186
4
HOH
HOH
490
B
HOH
188
4
HOH
HOH
491
B
HOH
194
4
HOH
HOH
492
B
HOH
195
4
HOH
HOH
493
B
HOH
197
4
HOH
HOH
494
B
HOH
200
4
HOH
HOH
495
B
HOH
201
4
HOH
HOH
496
B
HOH
202
4
HOH
HOH
497
B
HOH
203
4
HOH
HOH
498
B
HOH
208
4
HOH
HOH
499
B
HOH
209
4
HOH
HOH
500
B
HOH
212
4
HOH
HOH
501
B
HOH
214
4
HOH
HOH
502
B
HOH
218
4
HOH
HOH
503
B
HOH
223
4
HOH
HOH
504
B
HOH
228
4
HOH
HOH
505
B
HOH
229
4
HOH
HOH
506
B
HOH
230
4
HOH
HOH
507
B
HOH
236
4
HOH
HOH
508
B
HOH
238
4
HOH
HOH
509
B
HOH
239
4
HOH
HOH
510
B
n
1
-21
A
n
2
-20
A
n
3
-19
A
n
4
-18
A
n
5
-17
A
n
6
-16
A
n
7
-15
A
n
8
-14
A
n
9
-13
A
n
10
-12
A
n
11
-11
A
n
12
-10
A
n
13
-9
A
n
14
-8
A
n
15
-7
A
n
16
-6
A
n
17
-5
A
n
18
-4
A
TYR
-3
n
19
TYR
-3
A
PHE
-2
n
20
PHE
-2
A
GLN
-1
n
21
GLN
-1
A
SER
0
n
22
SER
0
A
MSE
1
n
23
MSE
1
A
ARG
2
n
24
ARG
2
A
TYR
3
n
25
TYR
3
A
GLY
4
n
26
GLY
4
A
VAL
5
n
27
VAL
5
A
ILE
6
n
28
ILE
6
A
ASN
7
n
29
ASN
7
A
ALA
8
n
30
ALA
8
A
MSE
9
n
31
MSE
9
A
ALA
10
n
32
ALA
10
A
GLU
11
n
33
GLU
11
A
GLU
12
n
34
GLU
12
A
LYS
13
n
35
LYS
13
A
ALA
14
n
36
ALA
14
A
ALA
15
n
37
ALA
15
A
LEU
16
n
38
LEU
16
A
VAL
17
n
39
VAL
17
A
ASP
18
n
40
ASP
18
A
ALA
19
n
41
ALA
19
A
MSE
20
n
42
MSE
20
A
ILE
21
n
43
ILE
21
A
ASP
22
n
44
ASP
22
A
GLU
23
n
45
GLU
23
A
LYS
24
n
46
LYS
24
A
LYS
25
n
47
LYS
25
A
THR
26
n
48
THR
26
A
THR
27
n
49
THR
27
A
ILE
28
n
50
ILE
28
A
ALA
29
n
51
ALA
29
A
GLY
30
n
52
GLY
30
A
LYS
31
n
53
LYS
31
A
LEU
32
n
54
LEU
32
A
PHE
33
n
55
PHE
33
A
HIS
34
n
56
HIS
34
A
HIS
35
n
57
HIS
35
A
GLY
36
n
58
GLY
36
A
LYS
37
n
59
LYS
37
A
ILE
38
n
60
ILE
38
A
GLY
39
n
61
GLY
39
A
HIS
40
n
62
HIS
40
A
VAL
41
n
63
VAL
41
A
ASP
42
n
64
ASP
42
A
VAL
43
n
65
VAL
43
A
VAL
44
n
66
VAL
44
A
VAL
45
n
67
VAL
45
A
VAL
46
n
68
VAL
46
A
GLU
47
n
69
GLU
47
A
SER
48
n
70
SER
48
A
GLY
49
n
71
GLY
49
A
ILE
50
n
72
ILE
50
A
GLY
51
n
73
GLY
51
A
LYS
52
n
74
LYS
52
A
VAL
53
n
75
VAL
53
A
ALA
54
n
76
ALA
54
A
SER
55
n
77
SER
55
A
ALA
56
n
78
ALA
56
A
LEU
57
n
79
LEU
57
A
THR
58
n
80
THR
58
A
THR
59
n
81
THR
59
A
THR
60
n
82
THR
60
A
LEU
61
n
83
LEU
61
A
LEU
62
n
84
LEU
62
A
ILE
63
n
85
ILE
63
A
THR
64
n
86
THR
64
A
ASN
65
n
87
ASN
65
A
PHE
66
n
88
PHE
66
A
GLY
67
n
89
GLY
67
A
VAL
68
n
90
VAL
68
A
ASP
69
n
91
ASP
69
A
ALA
70
n
92
ALA
70
A
VAL
71
n
93
VAL
71
A
ILE
72
n
94
ILE
72
A
ASN
73
n
95
ASN
73
A
SER
74
n
96
SER
74
A
GLY
75
n
97
GLY
75
A
SER
76
n
98
SER
76
A
ALA
77
n
99
ALA
77
A
GLY
78
n
100
GLY
78
A
ALA
79
n
101
ALA
79
A
LEU
80
n
102
LEU
80
A
GLY
81
n
103
GLY
81
A
THR
82
n
104
THR
82
A
ASP
83
n
105
ASP
83
A
LEU
84
n
106
LEU
84
A
ARG
85
n
107
ARG
85
A
ILE
86
n
108
ILE
86
A
GLY
87
n
109
GLY
87
A
ASP
88
n
110
ASP
88
A
ILE
89
n
111
ILE
89
A
VAL
90
n
112
VAL
90
A
ILE
91
n
113
ILE
91
A
ALA
92
n
114
ALA
92
A
ASP
93
n
115
ASP
93
A
TYR
94
n
116
TYR
94
A
LEU
95
n
117
LEU
95
A
ALA
96
n
118
ALA
96
A
TYR
97
n
119
TYR
97
A
ALA
98
n
120
ALA
98
A
ASP
99
n
121
ASP
99
A
ALA
100
n
122
ALA
100
A
ASP
101
n
123
ASP
101
A
ALA
102
n
124
ALA
102
A
ARG
103
n
125
ARG
103
A
ALA
104
n
126
ALA
104
A
PHE
105
n
127
PHE
105
A
GLY
106
n
128
GLY
106
A
TYR
107
n
129
TYR
107
A
ALA
108
n
130
ALA
108
A
TYR
109
n
131
TYR
109
A
GLY
110
n
132
GLY
110
A
GLN
111
n
133
GLN
111
A
VAL
112
n
134
VAL
112
A
PRO
113
n
135
PRO
113
A
GLN
114
n
136
GLN
114
A
GLN
115
n
137
GLN
115
A
PRO
116
n
138
PRO
116
A
ALA
117
n
139
ALA
117
A
ARG
118
n
140
ARG
118
A
PHE
119
n
141
PHE
119
A
LYS
120
n
142
LYS
120
A
ALA
121
n
143
ALA
121
A
ASP
122
n
144
ASP
122
A
THR
123
n
145
THR
123
A
ASP
124
n
146
ASP
124
A
LEU
125
n
147
LEU
125
A
SER
126
n
148
SER
126
A
ASN
127
n
149
ASN
127
A
ASP
128
n
150
ASP
128
A
LEU
129
n
151
LEU
129
A
SER
130
n
152
SER
130
A
GLU
131
n
153
GLU
131
A
SER
132
n
154
SER
132
A
TYR
133
n
155
TYR
133
A
GLU
134
n
156
GLU
134
A
LYS
135
n
157
LYS
135
A
VAL
136
n
158
VAL
136
A
THR
137
n
159
THR
137
A
ASP
138
n
160
ASP
138
A
ALA
139
n
161
ALA
139
A
ARG
140
n
162
ARG
140
A
LEU
141
n
163
LEU
141
A
VAL
142
n
164
VAL
142
A
ARG
143
n
165
ARG
143
A
GLY
144
n
166
GLY
144
A
LEU
145
n
167
LEU
145
A
VAL
146
n
168
VAL
146
A
VAL
147
n
169
VAL
147
A
THR
148
n
170
THR
148
A
SER
149
n
171
SER
149
A
ASP
150
n
172
ASP
150
A
SER
151
n
173
SER
151
A
PHE
152
n
174
PHE
152
A
ILE
153
n
175
ILE
153
A
ALA
154
n
176
ALA
154
A
SER
155
n
177
SER
155
A
ASN
156
n
178
ASN
156
A
GLU
157
n
179
GLU
157
A
GLN
158
n
180
GLN
158
A
LYS
159
n
181
LYS
159
A
GLN
160
n
182
GLN
160
A
THR
161
n
183
THR
161
A
ILE
162
n
184
ILE
162
A
LEU
163
n
185
LEU
163
A
THR
164
n
186
THR
164
A
HIS
165
n
187
HIS
165
A
PHE
166
n
188
PHE
166
A
PRO
167
n
189
PRO
167
A
GLU
168
n
190
GLU
168
A
ALA
169
n
191
ALA
169
A
GLN
170
n
192
GLN
170
A
SER
171
n
193
SER
171
A
ALA
172
n
194
ALA
172
A
GLU
173
n
195
GLU
173
A
MSE
174
n
196
MSE
174
A
GLU
175
n
197
GLU
175
A
GLY
176
n
198
GLY
176
A
ALA
177
n
199
ALA
177
A
SER
178
n
200
SER
178
A
ILE
179
n
201
ILE
179
A
ALA
180
n
202
ALA
180
A
GLN
181
n
203
GLN
181
A
VAL
182
n
204
VAL
182
A
ALA
183
n
205
ALA
183
A
ASN
184
n
206
ASN
184
A
TYR
185
n
207
TYR
185
A
PHE
186
n
208
PHE
186
A
ASP
187
n
209
ASP
187
A
VAL
188
n
210
VAL
188
A
PRO
189
n
211
PRO
189
A
PHE
190
n
212
PHE
190
A
ALA
191
n
213
ALA
191
A
VAL
192
n
214
VAL
192
A
VAL
193
n
215
VAL
193
A
ARG
194
n
216
ARG
194
A
ALA
195
n
217
ALA
195
A
ILE
196
n
218
ILE
196
A
SER
197
n
219
SER
197
A
ASP
198
n
220
ASP
198
A
ASN
199
n
221
ASN
199
A
ALA
200
n
222
ALA
200
A
ASN
201
n
223
ASN
201
A
GLY
202
n
224
GLY
202
A
GLU
203
n
225
GLU
203
A
ALA
204
n
226
ALA
204
A
GLY
205
n
227
GLY
205
A
MSE
206
n
228
MSE
206
A
THR
207
n
229
THR
207
A
PHE
208
n
230
PHE
208
A
ASP
209
n
231
ASP
209
A
ASP
210
n
232
ASP
210
A
PHE
211
n
233
PHE
211
A
ILE
212
n
234
ILE
212
A
VAL
213
n
235
VAL
213
A
GLU
214
n
236
GLU
214
A
ALA
215
n
237
ALA
215
A
GLY
216
n
238
GLY
216
A
GLN
217
n
239
GLN
217
A
GLN
218
n
240
GLN
218
A
SER
219
n
241
SER
219
A
ALA
220
n
242
ALA
220
A
GLN
221
n
243
GLN
221
A
VAL
222
n
244
VAL
222
A
LEU
223
n
245
LEU
223
A
ILE
224
n
246
ILE
224
A
ASN
225
n
247
ASN
225
A
PHE
226
n
248
PHE
226
A
PHE
227
n
249
PHE
227
A
GLU
228
n
250
GLU
228
A
ALA
229
n
251
ALA
229
A
GLN
230
n
252
GLN
230
A
ALA
231
n
253
ALA
231
A
n
1
-21
B
n
2
-20
B
n
3
-19
B
n
4
-18
B
n
5
-17
B
n
6
-16
B
n
7
-15
B
n
8
-14
B
n
9
-13
B
n
10
-12
B
n
11
-11
B
n
12
-10
B
n
13
-9
B
n
14
-8
B
n
15
-7
B
n
16
-6
B
n
17
-5
B
n
18
-4
B
n
19
-3
B
n
20
-2
B
n
21
-1
B
n
22
0
B
MSE
1
n
23
MSE
1
B
ARG
2
n
24
ARG
2
B
TYR
3
n
25
TYR
3
B
GLY
4
n
26
GLY
4
B
VAL
5
n
27
VAL
5
B
ILE
6
n
28
ILE
6
B
ASN
7
n
29
ASN
7
B
ALA
8
n
30
ALA
8
B
MSE
9
n
31
MSE
9
B
ALA
10
n
32
ALA
10
B
GLU
11
n
33
GLU
11
B
GLU
12
n
34
GLU
12
B
LYS
13
n
35
LYS
13
B
ALA
14
n
36
ALA
14
B
ALA
15
n
37
ALA
15
B
LEU
16
n
38
LEU
16
B
VAL
17
n
39
VAL
17
B
ASP
18
n
40
ASP
18
B
ALA
19
n
41
ALA
19
B
MSE
20
n
42
MSE
20
B
ILE
21
n
43
ILE
21
B
ASP
22
n
44
ASP
22
B
GLU
23
n
45
GLU
23
B
LYS
24
n
46
LYS
24
B
LYS
25
n
47
LYS
25
B
THR
26
n
48
THR
26
B
THR
27
n
49
THR
27
B
ILE
28
n
50
ILE
28
B
ALA
29
n
51
ALA
29
B
GLY
30
n
52
GLY
30
B
LYS
31
n
53
LYS
31
B
LEU
32
n
54
LEU
32
B
PHE
33
n
55
PHE
33
B
HIS
34
n
56
HIS
34
B
HIS
35
n
57
HIS
35
B
GLY
36
n
58
GLY
36
B
LYS
37
n
59
LYS
37
B
ILE
38
n
60
ILE
38
B
GLY
39
n
61
GLY
39
B
HIS
40
n
62
HIS
40
B
VAL
41
n
63
VAL
41
B
ASP
42
n
64
ASP
42
B
VAL
43
n
65
VAL
43
B
VAL
44
n
66
VAL
44
B
VAL
45
n
67
VAL
45
B
VAL
46
n
68
VAL
46
B
GLU
47
n
69
GLU
47
B
SER
48
n
70
SER
48
B
GLY
49
n
71
GLY
49
B
ILE
50
n
72
ILE
50
B
GLY
51
n
73
GLY
51
B
LYS
52
n
74
LYS
52
B
VAL
53
n
75
VAL
53
B
ALA
54
n
76
ALA
54
B
SER
55
n
77
SER
55
B
ALA
56
n
78
ALA
56
B
LEU
57
n
79
LEU
57
B
THR
58
n
80
THR
58
B
THR
59
n
81
THR
59
B
THR
60
n
82
THR
60
B
LEU
61
n
83
LEU
61
B
LEU
62
n
84
LEU
62
B
ILE
63
n
85
ILE
63
B
THR
64
n
86
THR
64
B
ASN
65
n
87
ASN
65
B
PHE
66
n
88
PHE
66
B
GLY
67
n
89
GLY
67
B
VAL
68
n
90
VAL
68
B
ASP
69
n
91
ASP
69
B
ALA
70
n
92
ALA
70
B
VAL
71
n
93
VAL
71
B
ILE
72
n
94
ILE
72
B
ASN
73
n
95
ASN
73
B
SER
74
n
96
SER
74
B
GLY
75
n
97
GLY
75
B
SER
76
n
98
SER
76
B
ALA
77
n
99
ALA
77
B
GLY
78
n
100
GLY
78
B
ALA
79
n
101
ALA
79
B
LEU
80
n
102
LEU
80
B
GLY
81
n
103
GLY
81
B
THR
82
n
104
THR
82
B
ASP
83
n
105
ASP
83
B
LEU
84
n
106
LEU
84
B
ARG
85
n
107
ARG
85
B
ILE
86
n
108
ILE
86
B
GLY
87
n
109
GLY
87
B
ASP
88
n
110
ASP
88
B
ILE
89
n
111
ILE
89
B
VAL
90
n
112
VAL
90
B
ILE
91
n
113
ILE
91
B
ALA
92
n
114
ALA
92
B
ASP
93
n
115
ASP
93
B
TYR
94
n
116
TYR
94
B
LEU
95
n
117
LEU
95
B
ALA
96
n
118
ALA
96
B
TYR
97
n
119
TYR
97
B
ALA
98
n
120
ALA
98
B
ASP
99
n
121
ASP
99
B
ALA
100
n
122
ALA
100
B
ASP
101
n
123
ASP
101
B
ALA
102
n
124
ALA
102
B
ARG
103
n
125
ARG
103
B
ALA
104
n
126
ALA
104
B
PHE
105
n
127
PHE
105
B
GLY
106
n
128
GLY
106
B
TYR
107
n
129
TYR
107
B
ALA
108
n
130
ALA
108
B
TYR
109
n
131
TYR
109
B
GLY
110
n
132
GLY
110
B
GLN
111
n
133
GLN
111
B
VAL
112
n
134
VAL
112
B
PRO
113
n
135
PRO
113
B
GLN
114
n
136
GLN
114
B
GLN
115
n
137
GLN
115
B
PRO
116
n
138
PRO
116
B
ALA
117
n
139
ALA
117
B
ARG
118
n
140
ARG
118
B
PHE
119
n
141
PHE
119
B
LYS
120
n
142
LYS
120
B
ALA
121
n
143
ALA
121
B
ASP
122
n
144
ASP
122
B
THR
123
n
145
THR
123
B
ASP
124
n
146
ASP
124
B
LEU
125
n
147
LEU
125
B
SER
126
n
148
SER
126
B
ASN
127
n
149
ASN
127
B
ASP
128
n
150
ASP
128
B
LEU
129
n
151
LEU
129
B
SER
130
n
152
SER
130
B
GLU
131
n
153
GLU
131
B
SER
132
n
154
SER
132
B
TYR
133
n
155
TYR
133
B
GLU
134
n
156
GLU
134
B
LYS
135
n
157
LYS
135
B
VAL
136
n
158
VAL
136
B
THR
137
n
159
THR
137
B
ASP
138
n
160
ASP
138
B
ALA
139
n
161
ALA
139
B
ARG
140
n
162
ARG
140
B
LEU
141
n
163
LEU
141
B
VAL
142
n
164
VAL
142
B
ARG
143
n
165
ARG
143
B
GLY
144
n
166
GLY
144
B
LEU
145
n
167
LEU
145
B
VAL
146
n
168
VAL
146
B
VAL
147
n
169
VAL
147
B
THR
148
n
170
THR
148
B
SER
149
n
171
SER
149
B
ASP
150
n
172
ASP
150
B
SER
151
n
173
SER
151
B
PHE
152
n
174
PHE
152
B
ILE
153
n
175
ILE
153
B
ALA
154
n
176
ALA
154
B
SER
155
n
177
SER
155
B
ASN
156
n
178
ASN
156
B
GLU
157
n
179
GLU
157
B
GLN
158
n
180
GLN
158
B
LYS
159
n
181
LYS
159
B
GLN
160
n
182
GLN
160
B
THR
161
n
183
THR
161
B
ILE
162
n
184
ILE
162
B
LEU
163
n
185
LEU
163
B
THR
164
n
186
THR
164
B
HIS
165
n
187
HIS
165
B
PHE
166
n
188
PHE
166
B
PRO
167
n
189
PRO
167
B
GLU
168
n
190
GLU
168
B
ALA
169
n
191
ALA
169
B
GLN
170
n
192
GLN
170
B
SER
171
n
193
SER
171
B
ALA
172
n
194
ALA
172
B
GLU
173
n
195
GLU
173
B
MSE
174
n
196
MSE
174
B
GLU
175
n
197
GLU
175
B
GLY
176
n
198
GLY
176
B
ALA
177
n
199
ALA
177
B
SER
178
n
200
SER
178
B
ILE
179
n
201
ILE
179
B
ALA
180
n
202
ALA
180
B
GLN
181
n
203
GLN
181
B
VAL
182
n
204
VAL
182
B
ALA
183
n
205
ALA
183
B
ASN
184
n
206
ASN
184
B
TYR
185
n
207
TYR
185
B
PHE
186
n
208
PHE
186
B
ASP
187
n
209
ASP
187
B
VAL
188
n
210
VAL
188
B
PRO
189
n
211
PRO
189
B
PHE
190
n
212
PHE
190
B
ALA
191
n
213
ALA
191
B
VAL
192
n
214
VAL
192
B
VAL
193
n
215
VAL
193
B
ARG
194
n
216
ARG
194
B
ALA
195
n
217
ALA
195
B
ILE
196
n
218
ILE
196
B
SER
197
n
219
SER
197
B
ASP
198
n
220
ASP
198
B
ASN
199
n
221
ASN
199
B
ALA
200
n
222
ALA
200
B
ASN
201
n
223
ASN
201
B
GLY
202
n
224
GLY
202
B
n
225
203
B
n
226
204
B
n
227
205
B
n
228
206
B
n
229
207
B
PHE
208
n
230
PHE
208
B
ASP
209
n
231
ASP
209
B
ASP
210
n
232
ASP
210
B
PHE
211
n
233
PHE
211
B
ILE
212
n
234
ILE
212
B
VAL
213
n
235
VAL
213
B
GLU
214
n
236
GLU
214
B
ALA
215
n
237
ALA
215
B
GLY
216
n
238
GLY
216
B
GLN
217
n
239
GLN
217
B
GLN
218
n
240
GLN
218
B
SER
219
n
241
SER
219
B
ALA
220
n
242
ALA
220
B
GLN
221
n
243
GLN
221
B
VAL
222
n
244
VAL
222
B
LEU
223
n
245
LEU
223
B
ILE
224
n
246
ILE
224
B
ASN
225
n
247
ASN
225
B
PHE
226
n
248
PHE
226
B
PHE
227
n
249
PHE
227
B
GLU
228
n
250
GLU
228
B
ALA
229
n
251
ALA
229
B
GLN
230
n
252
GLN
230
B
ALA
231
n
253
ALA
231
B
author_and_software_defined_assembly
PISA
2
dimeric
3880
-6
18300
A
MSE
1
SELENOMETHIONINE
A
MSE
23
MET
A
MSE
9
SELENOMETHIONINE
A
MSE
31
MET
A
MSE
20
SELENOMETHIONINE
A
MSE
42
MET
A
MSE
174
SELENOMETHIONINE
A
MSE
196
MET
A
MSE
206
SELENOMETHIONINE
A
MSE
228
MET
B
MSE
1
SELENOMETHIONINE
B
MSE
23
MET
B
MSE
9
SELENOMETHIONINE
B
MSE
31
MET
B
MSE
20
SELENOMETHIONINE
B
MSE
42
MET
B
MSE
174
SELENOMETHIONINE
B
MSE
196
MET
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
THR
26
A
N
THR
48
A
O
PHE
33
A
O
PHE
55
A
N
HIS
34
A
N
HIS
56
A
O
VAL
45
A
O
VAL
67
A
O
VAL
44
A
O
VAL
66
A
N
VAL
5
A
N
VAL
27
A
N
GLY
4
A
N
GLY
26
A
O
ILE
72
A
O
ILE
94
A
N
ASN
73
A
N
ASN
95
A
O
ALA
191
A
O
ALA
213
A
O
ARG
194
A
O
ARG
216
A
N
VAL
90
A
N
VAL
112
A
N
LEU
95
A
N
LEU
117
A
O
PHE
119
A
O
PHE
141
A
N
THR
26
A
N
THR
48
A
O
PHE
33
A
O
PHE
55
A
N
HIS
34
A
N
HIS
56
A
O
VAL
45
A
O
VAL
67
A
O
VAL
44
A
O
VAL
66
A
N
VAL
5
A
N
VAL
27
A
N
GLY
4
A
N
GLY
26
A
O
ILE
72
A
O
ILE
94
A
N
ASN
73
A
N
ASN
95
A
O
ALA
191
A
O
ALA
213
A
O
ARG
194
A
O
ARG
216
A
N
VAL
90
A
N
VAL
112
A
N
ILE
91
A
N
ILE
113
A
O
VAL
142
A
O
VAL
164
A
N
LEU
145
A
N
LEU
167
A
O
GLN
170
A
O
GLN
192
B
N
THR
26
B
N
THR
48
B
O
PHE
33
B
O
PHE
55
B
N
GLY
36
B
N
GLY
58
B
O
VAL
43
B
O
VAL
65
B
O
VAL
44
B
O
VAL
66
B
N
VAL
5
B
N
VAL
27
B
N
GLY
4
B
N
GLY
26
B
O
ALA
70
B
O
ALA
92
B
N
GLY
78
B
N
GLY
100
B
O
ALA
172
B
O
ALA
194
B
O
GLN
170
B
O
GLN
192
B
N
LEU
145
B
N
LEU
167
B
O
VAL
142
B
O
VAL
164
B
N
ILE
91
B
N
ILE
113
B
N
LEU
95
B
N
LEU
117
B
O
PHE
119
B
O
PHE
141
B
N
THR
26
B
N
THR
48
B
O
PHE
33
B
O
PHE
55
B
N
GLY
36
B
N
GLY
58
B
O
VAL
43
B
O
VAL
65
B
O
VAL
44
B
O
VAL
66
B
N
VAL
5
B
N
VAL
27
B
N
GLY
4
B
N
GLY
26
B
O
ALA
70
B
O
ALA
92
B
N
GLY
75
B
N
GLY
97
B
O
ALA
195
B
O
ALA
217
B
O
ARG
194
B
O
ARG
216
B
N
VAL
90
B
N
VAL
112
B
N
LEU
95
B
N
LEU
117
B
O
PHE
119
B
O
PHE
141
1
A
MSE
-21
A
MSE
1
1
Y
1
A
HIS
-20
A
HIS
2
1
Y
1
A
HIS
-19
A
HIS
3
1
Y
1
A
HIS
-18
A
HIS
4
1
Y
1
A
HIS
-17
A
HIS
5
1
Y
1
A
HIS
-16
A
HIS
6
1
Y
1
A
HIS
-15
A
HIS
7
1
Y
1
A
SER
-14
A
SER
8
1
Y
1
A
SER
-13
A
SER
9
1
Y
1
A
GLY
-12
A
GLY
10
1
Y
1
A
VAL
-11
A
VAL
11
1
Y
1
A
ASP
-10
A
ASP
12
1
Y
1
A
LEU
-9
A
LEU
13
1
Y
1
A
GLY
-8
A
GLY
14
1
Y
1
A
THR
-7
A
THR
15
1
Y
1
A
GLU
-6
A
GLU
16
1
Y
1
A
ASN
-5
A
ASN
17
1
Y
1
A
LEU
-4
A
LEU
18
1
Y
1
B
MSE
-21
B
MSE
1
1
Y
1
B
HIS
-20
B
HIS
2
1
Y
1
B
HIS
-19
B
HIS
3
1
Y
1
B
HIS
-18
B
HIS
4
1
Y
1
B
HIS
-17
B
HIS
5
1
Y
1
B
HIS
-16
B
HIS
6
1
Y
1
B
HIS
-15
B
HIS
7
1
Y
1
B
SER
-14
B
SER
8
1
Y
1
B
SER
-13
B
SER
9
1
Y
1
B
GLY
-12
B
GLY
10
1
Y
1
B
VAL
-11
B
VAL
11
1
Y
1
B
ASP
-10
B
ASP
12
1
Y
1
B
LEU
-9
B
LEU
13
1
Y
1
B
GLY
-8
B
GLY
14
1
Y
1
B
THR
-7
B
THR
15
1
Y
1
B
GLU
-6
B
GLU
16
1
Y
1
B
ASN
-5
B
ASN
17
1
Y
1
B
LEU
-4
B
LEU
18
1
Y
1
B
TYR
-3
B
TYR
19
1
Y
1
B
PHE
-2
B
PHE
20
1
Y
1
B
GLN
-1
B
GLN
21
1
Y
1
B
SER
0
B
SER
22
1
Y
1
B
GLU
203
B
GLU
225
1
Y
1
B
ALA
204
B
ALA
226
1
Y
1
B
GLY
205
B
GLY
227
1
Y
1
B
MSE
206
B
MSE
228
1
Y
1
B
THR
207
B
THR
229
1
Y
1
A
A
O
OD1
MSE
ASP
1
42
2.13
A
1
B
B
O3
O
GOL
HOH
304
510
2.19
B
1
3.42
0.50
120.30
123.72
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
143
143
143
N
1
A
GLN
114
76.79
-2.41
83.350
27.6680
11.710
-0.6100
-0.0000
-0.0000
-0.6100
0.0000
1.2100
0.9630
0.9470
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : REFINED INDIVIDUALLY
0.2114
0.1792
0.1808
1.7000
38.1200
2906
57283
5.1000
99.9700
1.000
0.500
1.9750
0.0650
RANDOM
1
THROUGHOUT
0.000
SAD
0.0970
0.0970
0.8000
0.8000
1.4000
MAXIMUM LIKELIHOOD
MASK
1.7000
38.1200
239
3728
22
0
3467
0.012
0.019
3686
0.001
0.020
3491
1.502
1.957
5025
0.792
3.000
8033
6.255
5.000
505
37.301
25.398
176
13.595
15.000
561
14.553
15.000
16
0.092
0.200
584
0.006
0.020
4347
0.001
0.020
843
0.3140
0.2760
1.7440
230
3935
4165
3935
20
99.7800
19.7
1.70
38.38
4KN5
57368
0
0.113
1
27.8
29.2
100.0
1.986
1.70
1.73
2.3
3003
1
27.7
99.8
refinement
Garib N. Murshudov
garib@ysbl.york.ac.uk
Fortran_77
http://www.ccp4.ac.uk/dist/html/refmac5.html
REFMAC
program
5.7.0029
data extraction
PDB
deposit@deposit.rcsb.org
April 22, 2011
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.11
data collection
CBASS
data reduction
XDS
data scaling
Aimless
phasing
SHELX
C
phasing
SHELXD
model building
SHELXE
Methylthioadenosine nucleosidase (E.C.3.2.2.16)
Crystal structure of a putative methylthioadenosine nucleosidase from Weissella paramesenteroides ATCC 33313 (Target NYSGRC-029342 )
1
N
N
1
N
N
2
N
N
2
N
N
2
N
N
2
N
N
3
N
N
4
N
N
4
N
N
DIMERIC
A
MSE
9
A
MSE
31
HELX_P
A
MSE
20
A
MSE
42
1
1
12
A
GLY
51
A
GLY
73
HELX_P
A
GLY
67
A
GLY
89
1
2
17
A
ALA
102
A
ALA
124
HELX_P
A
GLY
106
A
GLY
128
5
3
5
A
ASP
122
A
ASP
144
HELX_P
A
THR
137
A
THR
159
1
4
16
A
SER
155
A
SER
177
HELX_P
A
PHE
166
A
PHE
188
1
5
12
A
GLU
175
A
GLU
197
HELX_P
A
PHE
186
A
PHE
208
1
6
12
A
THR
207
A
THR
229
HELX_P
A
ALA
231
A
ALA
253
1
7
25
B
MSE
9
B
MSE
31
HELX_P
B
MSE
20
B
MSE
42
1
8
12
B
GLY
51
B
GLY
73
HELX_P
B
GLY
67
B
GLY
89
1
9
17
B
ALA
102
B
ALA
124
HELX_P
B
GLY
106
B
GLY
128
5
10
5
B
ASP
122
B
ASP
144
HELX_P
B
THR
137
B
THR
159
1
11
16
B
SER
155
B
SER
177
HELX_P
B
PHE
166
B
PHE
188
1
12
12
B
GLU
175
B
GLU
197
HELX_P
B
PHE
186
B
PHE
208
1
13
12
B
ASP
210
B
ASP
232
HELX_P
B
ALA
229
B
ALA
251
1
14
20
covale
1.331
A
SER
0
A
C
SER
22
1_555
A
MSE
1
A
N
MSE
23
1_555
covale
1.342
A
MSE
1
A
C
MSE
23
1_555
A
ARG
2
A
N
ARG
24
1_555
covale
1.335
A
ALA
8
A
C
ALA
30
1_555
A
MSE
9
A
N
MSE
31
1_555
covale
1.329
A
MSE
9
A
C
MSE
31
1_555
A
ALA
10
A
N
ALA
32
1_555
covale
1.331
A
ALA
19
A
C
ALA
41
1_555
A
MSE
20
A
N
MSE
42
1_555
covale
1.319
A
MSE
20
A
C
MSE
42
1_555
A
ILE
21
A
N
ILE
43
1_555
covale
1.344
A
GLU
173
A
C
GLU
195
1_555
A
MSE
174
A
N
MSE
196
1_555
covale
1.343
A
MSE
174
A
C
MSE
196
1_555
A
GLU
175
A
N
GLU
197
1_555
covale
1.332
A
GLY
205
A
C
GLY
227
1_555
A
MSE
206
A
N
MSE
228
1_555
covale
1.333
A
MSE
206
A
C
MSE
228
1_555
A
THR
207
A
N
THR
229
1_555
covale
1.334
B
MSE
1
B
C
MSE
23
1_555
B
ARG
2
B
N
ARG
24
1_555
covale
1.331
B
ALA
8
B
C
ALA
30
1_555
B
MSE
9
B
N
MSE
31
1_555
covale
1.335
B
MSE
9
B
C
MSE
31
1_555
B
ALA
10
B
N
ALA
32
1_555
covale
1.336
B
ALA
19
B
C
ALA
41
1_555
B
MSE
20
B
N
MSE
42
1_555
covale
1.326
B
MSE
20
B
C
MSE
42
1_555
B
ILE
21
B
N
ILE
43
1_555
covale
1.337
B
GLU
173
B
C
GLU
195
1_555
B
MSE
174
B
N
MSE
196
1_555
covale
1.329
B
MSE
174
B
C
MSE
196
1_555
B
GLU
175
B
N
GLU
197
1_555
HYDROLASE
5'-methylthioadenosine nucleosidase, Structural genomics, NYSGRC, New York Structural Genomics Research Consortium, PSI-Biology, HYDROLASE
C5RAK4_WEIPA
UNP
1
2
C5RAK4
RYGVINAMAEEKAALVDAMIDEKKTTIAGKLFHHGKIGHVDVVVVESGIGKVASALTTTLLITNFGVDAVINSGSAGALG
TDLRIGDIVIADYLAYADADARAFGYAYGQVPQQPARFKADTDLSNDLSESYEKVTDARLVRGLVVTSDSFIASNEQKQT
ILTHFPEAQSAEMEGASIAQVANYFDVPFAVVRAISDNANGEAGMTFDDFIVEAGQQSAQVLINFFEAQA
2
231
4KN5
2
231
C5RAK4
A
1
24
253
2
231
4KN5
2
231
C5RAK4
B
1
24
253
1
EXPRESSION TAG
MSE
-21
4KN5
A
C5RAK4
UNP
1
1
EXPRESSION TAG
HIS
-20
4KN5
A
C5RAK4
UNP
2
1
EXPRESSION TAG
HIS
-19
4KN5
A
C5RAK4
UNP
3
1
EXPRESSION TAG
HIS
-18
4KN5
A
C5RAK4
UNP
4
1
EXPRESSION TAG
HIS
-17
4KN5
A
C5RAK4
UNP
5
1
EXPRESSION TAG
HIS
-16
4KN5
A
C5RAK4
UNP
6
1
EXPRESSION TAG
HIS
-15
4KN5
A
C5RAK4
UNP
7
1
EXPRESSION TAG
SER
-14
4KN5
A
C5RAK4
UNP
8
1
EXPRESSION TAG
SER
-13
4KN5
A
C5RAK4
UNP
9
1
EXPRESSION TAG
GLY
-12
4KN5
A
C5RAK4
UNP
10
1
EXPRESSION TAG
VAL
-11
4KN5
A
C5RAK4
UNP
11
1
EXPRESSION TAG
ASP
-10
4KN5
A
C5RAK4
UNP
12
1
EXPRESSION TAG
LEU
-9
4KN5
A
C5RAK4
UNP
13
1
EXPRESSION TAG
GLY
-8
4KN5
A
C5RAK4
UNP
14
1
EXPRESSION TAG
THR
-7
4KN5
A
C5RAK4
UNP
15
1
EXPRESSION TAG
GLU
-6
4KN5
A
C5RAK4
UNP
16
1
EXPRESSION TAG
ASN
-5
4KN5
A
C5RAK4
UNP
17
1
EXPRESSION TAG
LEU
-4
4KN5
A
C5RAK4
UNP
18
1
EXPRESSION TAG
TYR
-3
4KN5
A
C5RAK4
UNP
19
1
EXPRESSION TAG
PHE
-2
4KN5
A
C5RAK4
UNP
20
1
EXPRESSION TAG
GLN
-1
4KN5
A
C5RAK4
UNP
21
1
EXPRESSION TAG
SER
0
4KN5
A
C5RAK4
UNP
22
1
EXPRESSION TAG
MSE
1
4KN5
A
C5RAK4
UNP
23
2
EXPRESSION TAG
MSE
-21
4KN5
B
C5RAK4
UNP
1
2
EXPRESSION TAG
HIS
-20
4KN5
B
C5RAK4
UNP
2
2
EXPRESSION TAG
HIS
-19
4KN5
B
C5RAK4
UNP
3
2
EXPRESSION TAG
HIS
-18
4KN5
B
C5RAK4
UNP
4
2
EXPRESSION TAG
HIS
-17
4KN5
B
C5RAK4
UNP
5
2
EXPRESSION TAG
HIS
-16
4KN5
B
C5RAK4
UNP
6
2
EXPRESSION TAG
HIS
-15
4KN5
B
C5RAK4
UNP
7
2
EXPRESSION TAG
SER
-14
4KN5
B
C5RAK4
UNP
8
2
EXPRESSION TAG
SER
-13
4KN5
B
C5RAK4
UNP
9
2
EXPRESSION TAG
GLY
-12
4KN5
B
C5RAK4
UNP
10
2
EXPRESSION TAG
VAL
-11
4KN5
B
C5RAK4
UNP
11
2
EXPRESSION TAG
ASP
-10
4KN5
B
C5RAK4
UNP
12
2
EXPRESSION TAG
LEU
-9
4KN5
B
C5RAK4
UNP
13
2
EXPRESSION TAG
GLY
-8
4KN5
B
C5RAK4
UNP
14
2
EXPRESSION TAG
THR
-7
4KN5
B
C5RAK4
UNP
15
2
EXPRESSION TAG
GLU
-6
4KN5
B
C5RAK4
UNP
16
2
EXPRESSION TAG
ASN
-5
4KN5
B
C5RAK4
UNP
17
2
EXPRESSION TAG
LEU
-4
4KN5
B
C5RAK4
UNP
18
2
EXPRESSION TAG
TYR
-3
4KN5
B
C5RAK4
UNP
19
2
EXPRESSION TAG
PHE
-2
4KN5
B
C5RAK4
UNP
20
2
EXPRESSION TAG
GLN
-1
4KN5
B
C5RAK4
UNP
21
2
EXPRESSION TAG
SER
0
4KN5
B
C5RAK4
UNP
22
2
EXPRESSION TAG
MSE
1
4KN5
B
C5RAK4
UNP
23
8
9
9
8
anti-parallel
anti-parallel
parallel
parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
parallel
parallel
anti-parallel
parallel
parallel
anti-parallel
anti-parallel
parallel
parallel
anti-parallel
parallel
parallel
anti-parallel
anti-parallel
anti-parallel
parallel
parallel
parallel
anti-parallel
anti-parallel
A
ILE
21
A
ILE
43
A
ILE
28
A
ILE
50
A
LYS
31
A
LYS
53
A
ILE
38
A
ILE
60
A
VAL
41
A
VAL
63
A
GLU
47
A
GLU
69
A
ARG
2
A
ARG
24
A
ASN
7
A
ASN
29
A
ALA
70
A
ALA
92
A
ALA
77
A
ALA
99
A
PHE
190
A
PHE
212
A
ILE
196
A
ILE
218
A
ILE
89
A
ILE
111
A
TYR
97
A
TYR
119
A
PHE
119
A
PHE
141
A
LYS
120
A
LYS
142
A
ILE
21
A
ILE
43
A
ILE
28
A
ILE
50
A
LYS
31
A
LYS
53
A
ILE
38
A
ILE
60
A
VAL
41
A
VAL
63
A
GLU
47
A
GLU
69
A
ARG
2
A
ARG
24
A
ASN
7
A
ASN
29
A
ALA
70
A
ALA
92
A
ALA
77
A
ALA
99
A
PHE
190
A
PHE
212
A
ILE
196
A
ILE
218
A
ILE
89
A
ILE
111
A
TYR
97
A
TYR
119
A
LEU
141
A
LEU
163
A
THR
148
A
THR
170
A
ALA
169
A
ALA
191
A
GLU
173
A
GLU
195
B
ILE
21
B
ILE
43
B
ILE
28
B
ILE
50
B
LYS
31
B
LYS
53
B
ILE
38
B
ILE
60
B
VAL
41
B
VAL
63
B
GLU
47
B
GLU
69
B
ARG
2
B
ARG
24
B
ASN
7
B
ASN
29
B
ALA
70
B
ALA
92
B
ALA
79
B
ALA
101
B
ALA
169
B
ALA
191
B
GLU
173
B
GLU
195
B
LEU
141
B
LEU
163
B
THR
148
B
THR
170
B
ILE
89
B
ILE
111
B
TYR
97
B
TYR
119
B
PHE
119
B
PHE
141
B
LYS
120
B
LYS
142
B
ILE
21
B
ILE
43
B
ILE
28
B
ILE
50
B
LYS
31
B
LYS
53
B
ILE
38
B
ILE
60
B
VAL
41
B
VAL
63
B
GLU
47
B
GLU
69
B
ARG
2
B
ARG
24
B
ASN
7
B
ASN
29
B
ALA
70
B
ALA
92
B
ALA
79
B
ALA
101
B
PHE
190
B
PHE
212
B
ILE
196
B
ILE
218
B
ILE
89
B
ILE
111
B
TYR
97
B
TYR
119
B
PHE
119
B
PHE
141
B
LYS
120
B
LYS
142
BINDING SITE FOR RESIDUE EDO A 301
Software
7
BINDING SITE FOR RESIDUE EDO B 301
Software
7
BINDING SITE FOR RESIDUE EDO B 302
Software
8
BINDING SITE FOR RESIDUE EDO B 303
Software
7
BINDING SITE FOR RESIDUE GOL B 304
Software
12
A
GLY
78
A
GLY
100
7
1_555
A
ALA
79
A
ALA
101
7
1_555
A
LEU
80
A
LEU
102
7
1_555
A
ILE
153
A
ILE
175
7
1_555
A
SER
171
A
SER
193
7
1_555
A
ALA
172
A
ALA
194
7
1_555
A
HOH
507
H
HOH
7
1_555
A
TYR
185
A
TYR
207
7
1_555
B
LYS
31
B
LYS
53
7
1_555
B
SER
48
B
SER
70
7
1_555
B
ALA
54
B
ALA
76
7
1_555
B
THR
58
B
THR
80
7
1_555
B
HOH
475
I
HOH
7
1_555
B
HOH
508
I
HOH
7
1_555
B
ARG
118
B
ARG
140
8
1_555
B
LEU
145
B
LEU
167
8
1_555
B
PHE
166
B
PHE
188
8
1_555
B
PRO
167
B
PRO
189
8
1_555
B
GLU
168
B
GLU
190
8
1_555
B
EDO
303
F
EDO
8
1_555
B
HOH
405
I
HOH
8
1_555
B
HOH
455
I
HOH
8
1_555
B
ASP
93
B
ASP
115
7
1_555
B
TYR
94
B
TYR
116
7
1_555
B
LEU
145
B
LEU
167
7
1_555
B
GLU
168
B
GLU
190
7
1_555
B
EDO
302
E
EDO
7
1_555
B
HOH
405
I
HOH
7
1_555
B
HOH
415
I
HOH
7
1_555
A
LYS
52
A
LYS
74
12
1_555
A
ASP
99
A
ASP
121
12
1_555
A
SER
149
A
SER
171
12
1_555
A
ASP
150
A
ASP
172
12
1_555
A
HOH
529
H
HOH
12
1_555
B
LYS
52
B
LYS
74
12
1_555
B
ASP
99
B
ASP
121
12
1_555
B
ALA
100
B
ALA
122
12
1_555
B
SER
149
B
SER
171
12
1_555
B
ASP
150
B
ASP
172
12
1_555
B
HOH
509
I
HOH
12
1_555
B
HOH
510
I
HOH
12
1_555
96
P 43 21 2