0.023068
0.000000
0.000000
0.000000
0.013924
0.000000
0.000000
0.000000
0.010616
0.00000
0.00000
0.00000
Ceccarelli, D.F.
Juang, Y.-C.
Sicheri, F.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
43.350
71.820
94.200
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C2 H6 O S
78.133
BETA-MERCAPTOETHANOL
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C3 H8 O3
92.094
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 Se
196.106
n
SELENOMETHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
UK
Nature
NATUAS
0006
1476-4687
498
318
324
10.1038/nature12296
23708998
The linear ubiquitin-specific deubiquitinase gumby regulates angiogenesis.
2013
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2008-11-07
ADSC QUANTUM 315
Si(111)
SINGLE WAVELENGTH
M
x-ray
1
0.97919
1.0
24-ID-C
APS
0.97919
SYNCHROTRON
APS BEAMLINE 24-ID-C
32495.859
Protein FAM105B
OTU domain (unp residues 79-352)
1
man
polymer
78.133
BETA-MERCAPTOETHANOL
1
syn
non-polymer
92.094
GLYCEROL
2
syn
non-polymer
18.015
water
222
nat
water
no
yes
GSRLSVAPE(MSE)DI(MSE)DYCKKEWRGNTQKATC(MSE)K(MSE)GYEEVSQKFTSIRRVRGDNYCALRATLFQA
(MSE)SQAVGLPPWLQDPEL(MSE)LLPEKLISKYNWIKQWKLGLKFDGKNEDLVDKIKESLTLLRKKWAGLAE(MSE)R
TAEARQIACDELFTNEAEEYSLYEAVKFL(MSE)LNRAIELYNDKEKGKEVPFFSVLLFARDTSNDPGQLLRNHLNQVGH
TGGLEQVE(MSE)FLLAYAVRHTIQVYRLSKYNTEEFITVYPTDPPKDWPVVTLIAEDDRHYNIPVRVCEETSL
GSRLSVAPEMDIMDYCKKEWRGNTQKATCMKMGYEEVSQKFTSIRRVRGDNYCALRATLFQAMSQAVGLPPWLQDPELML
LPEKLISKYNWIKQWKLGLKFDGKNEDLVDKIKESLTLLRKKWAGLAEMRTAEARQIACDELFTNEAEEYSLYEAVKFLM
LNRAIELYNDKEKGKEVPFFSVLLFARDTSNDPGQLLRNHLNQVGHTGGLEQVEMFLLAYAVRHTIQVYRLSKYNTEEFI
TVYPTDPPKDWPVVTLIAEDDRHYNIPVRVCEETSL
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
sample
FAM105B
9606
Homo sapiens
469008
Escherichia coli
BL21(DE3)
plasmid
pRoEX
1
2.07
45.48
VAPOR DIFFUSION, HANGING DROP
6.0
100mM MES, 200mM MgCl2, 19% PEG3350, pH 6.0, VAPOR DIFFUSION, HANGING DROP
citation
citation_author
repository
Initial release
Structure summary
Data collection
Database references
1
0
2013-06-05
1
1
2014-11-12
1
2
2018-04-18
_citation.journal_volume
_citation.page_first
_citation.page_last
_citation.pdbx_database_id_PubMed
_citation.title
_citation_author.name
RCSB
Y
RCSB
2013-05-17
REL
REL
BME
BETA-MERCAPTOETHANOL
GOL
GLYCEROL
HOH
water
BME
800
2
BME
BME
401
A
GOL
900
3
GOL
GOL
402
A
GOL
901
3
GOL
GOL
403
A
HOH
1
4
HOH
HOH
501
A
HOH
2
4
HOH
HOH
502
A
HOH
3
4
HOH
HOH
503
A
HOH
4
4
HOH
HOH
504
A
HOH
5
4
HOH
HOH
505
A
HOH
6
4
HOH
HOH
506
A
HOH
7
4
HOH
HOH
507
A
HOH
8
4
HOH
HOH
508
A
HOH
9
4
HOH
HOH
509
A
HOH
10
4
HOH
HOH
510
A
HOH
11
4
HOH
HOH
511
A
HOH
12
4
HOH
HOH
512
A
HOH
13
4
HOH
HOH
513
A
HOH
14
4
HOH
HOH
514
A
HOH
15
4
HOH
HOH
515
A
HOH
16
4
HOH
HOH
516
A
HOH
17
4
HOH
HOH
517
A
HOH
18
4
HOH
HOH
518
A
HOH
19
4
HOH
HOH
519
A
HOH
20
4
HOH
HOH
520
A
HOH
21
4
HOH
HOH
521
A
HOH
22
4
HOH
HOH
522
A
HOH
23
4
HOH
HOH
523
A
HOH
24
4
HOH
HOH
524
A
HOH
25
4
HOH
HOH
525
A
HOH
26
4
HOH
HOH
526
A
HOH
27
4
HOH
HOH
527
A
HOH
28
4
HOH
HOH
528
A
HOH
29
4
HOH
HOH
529
A
HOH
30
4
HOH
HOH
530
A
HOH
31
4
HOH
HOH
531
A
HOH
32
4
HOH
HOH
532
A
HOH
33
4
HOH
HOH
533
A
HOH
34
4
HOH
HOH
534
A
HOH
35
4
HOH
HOH
535
A
HOH
36
4
HOH
HOH
536
A
HOH
37
4
HOH
HOH
537
A
HOH
38
4
HOH
HOH
538
A
HOH
39
4
HOH
HOH
539
A
HOH
40
4
HOH
HOH
540
A
HOH
41
4
HOH
HOH
541
A
HOH
42
4
HOH
HOH
542
A
HOH
43
4
HOH
HOH
543
A
HOH
44
4
HOH
HOH
544
A
HOH
45
4
HOH
HOH
545
A
HOH
46
4
HOH
HOH
546
A
HOH
47
4
HOH
HOH
547
A
HOH
48
4
HOH
HOH
548
A
HOH
49
4
HOH
HOH
549
A
HOH
50
4
HOH
HOH
550
A
HOH
51
4
HOH
HOH
551
A
HOH
52
4
HOH
HOH
552
A
HOH
53
4
HOH
HOH
553
A
HOH
54
4
HOH
HOH
554
A
HOH
55
4
HOH
HOH
555
A
HOH
56
4
HOH
HOH
556
A
HOH
57
4
HOH
HOH
557
A
HOH
58
4
HOH
HOH
558
A
HOH
59
4
HOH
HOH
559
A
HOH
60
4
HOH
HOH
560
A
HOH
61
4
HOH
HOH
561
A
HOH
62
4
HOH
HOH
562
A
HOH
63
4
HOH
HOH
563
A
HOH
64
4
HOH
HOH
564
A
HOH
65
4
HOH
HOH
565
A
HOH
66
4
HOH
HOH
566
A
HOH
67
4
HOH
HOH
567
A
HOH
68
4
HOH
HOH
568
A
HOH
69
4
HOH
HOH
569
A
HOH
70
4
HOH
HOH
570
A
HOH
71
4
HOH
HOH
571
A
HOH
72
4
HOH
HOH
572
A
HOH
73
4
HOH
HOH
573
A
HOH
74
4
HOH
HOH
574
A
HOH
75
4
HOH
HOH
575
A
HOH
76
4
HOH
HOH
576
A
HOH
77
4
HOH
HOH
577
A
HOH
78
4
HOH
HOH
578
A
HOH
79
4
HOH
HOH
579
A
HOH
80
4
HOH
HOH
580
A
HOH
81
4
HOH
HOH
581
A
HOH
82
4
HOH
HOH
582
A
HOH
83
4
HOH
HOH
583
A
HOH
84
4
HOH
HOH
584
A
HOH
85
4
HOH
HOH
585
A
HOH
86
4
HOH
HOH
586
A
HOH
87
4
HOH
HOH
587
A
HOH
88
4
HOH
HOH
588
A
HOH
89
4
HOH
HOH
589
A
HOH
90
4
HOH
HOH
590
A
HOH
91
4
HOH
HOH
591
A
HOH
92
4
HOH
HOH
592
A
HOH
93
4
HOH
HOH
593
A
HOH
94
4
HOH
HOH
594
A
HOH
95
4
HOH
HOH
595
A
HOH
96
4
HOH
HOH
596
A
HOH
97
4
HOH
HOH
597
A
HOH
98
4
HOH
HOH
598
A
HOH
99
4
HOH
HOH
599
A
HOH
100
4
HOH
HOH
600
A
HOH
101
4
HOH
HOH
601
A
HOH
102
4
HOH
HOH
602
A
HOH
103
4
HOH
HOH
603
A
HOH
104
4
HOH
HOH
604
A
HOH
105
4
HOH
HOH
605
A
HOH
106
4
HOH
HOH
606
A
HOH
107
4
HOH
HOH
607
A
HOH
108
4
HOH
HOH
608
A
HOH
109
4
HOH
HOH
609
A
HOH
110
4
HOH
HOH
610
A
HOH
111
4
HOH
HOH
611
A
HOH
112
4
HOH
HOH
612
A
HOH
113
4
HOH
HOH
613
A
HOH
114
4
HOH
HOH
614
A
HOH
115
4
HOH
HOH
615
A
HOH
116
4
HOH
HOH
616
A
HOH
117
4
HOH
HOH
617
A
HOH
118
4
HOH
HOH
618
A
HOH
119
4
HOH
HOH
619
A
HOH
120
4
HOH
HOH
620
A
HOH
121
4
HOH
HOH
621
A
HOH
122
4
HOH
HOH
622
A
HOH
123
4
HOH
HOH
623
A
HOH
124
4
HOH
HOH
624
A
HOH
125
4
HOH
HOH
625
A
HOH
126
4
HOH
HOH
626
A
HOH
127
4
HOH
HOH
627
A
HOH
128
4
HOH
HOH
628
A
HOH
129
4
HOH
HOH
629
A
HOH
130
4
HOH
HOH
630
A
HOH
131
4
HOH
HOH
631
A
HOH
132
4
HOH
HOH
632
A
HOH
133
4
HOH
HOH
633
A
HOH
134
4
HOH
HOH
634
A
HOH
135
4
HOH
HOH
635
A
HOH
136
4
HOH
HOH
636
A
HOH
137
4
HOH
HOH
637
A
HOH
138
4
HOH
HOH
638
A
HOH
139
4
HOH
HOH
639
A
HOH
140
4
HOH
HOH
640
A
HOH
141
4
HOH
HOH
641
A
HOH
142
4
HOH
HOH
642
A
HOH
143
4
HOH
HOH
643
A
HOH
144
4
HOH
HOH
644
A
HOH
145
4
HOH
HOH
645
A
HOH
146
4
HOH
HOH
646
A
HOH
147
4
HOH
HOH
647
A
HOH
148
4
HOH
HOH
648
A
HOH
149
4
HOH
HOH
649
A
HOH
150
4
HOH
HOH
650
A
HOH
151
4
HOH
HOH
651
A
HOH
152
4
HOH
HOH
652
A
HOH
153
4
HOH
HOH
653
A
HOH
154
4
HOH
HOH
654
A
HOH
155
4
HOH
HOH
655
A
HOH
156
4
HOH
HOH
656
A
HOH
157
4
HOH
HOH
657
A
HOH
158
4
HOH
HOH
658
A
HOH
159
4
HOH
HOH
659
A
HOH
160
4
HOH
HOH
660
A
HOH
161
4
HOH
HOH
661
A
HOH
162
4
HOH
HOH
662
A
HOH
163
4
HOH
HOH
663
A
HOH
164
4
HOH
HOH
664
A
HOH
165
4
HOH
HOH
665
A
HOH
166
4
HOH
HOH
666
A
HOH
167
4
HOH
HOH
667
A
HOH
168
4
HOH
HOH
668
A
HOH
169
4
HOH
HOH
669
A
HOH
170
4
HOH
HOH
670
A
HOH
171
4
HOH
HOH
671
A
HOH
172
4
HOH
HOH
672
A
HOH
173
4
HOH
HOH
673
A
HOH
174
4
HOH
HOH
674
A
HOH
175
4
HOH
HOH
675
A
HOH
176
4
HOH
HOH
676
A
HOH
177
4
HOH
HOH
677
A
HOH
178
4
HOH
HOH
678
A
HOH
179
4
HOH
HOH
679
A
HOH
180
4
HOH
HOH
680
A
HOH
181
4
HOH
HOH
681
A
HOH
182
4
HOH
HOH
682
A
HOH
183
4
HOH
HOH
683
A
HOH
184
4
HOH
HOH
684
A
HOH
185
4
HOH
HOH
685
A
HOH
186
4
HOH
HOH
686
A
HOH
187
4
HOH
HOH
687
A
HOH
188
4
HOH
HOH
688
A
HOH
189
4
HOH
HOH
689
A
HOH
190
4
HOH
HOH
690
A
HOH
191
4
HOH
HOH
691
A
HOH
192
4
HOH
HOH
692
A
HOH
193
4
HOH
HOH
693
A
HOH
194
4
HOH
HOH
694
A
HOH
195
4
HOH
HOH
695
A
HOH
196
4
HOH
HOH
696
A
HOH
197
4
HOH
HOH
697
A
HOH
198
4
HOH
HOH
698
A
HOH
199
4
HOH
HOH
699
A
HOH
200
4
HOH
HOH
700
A
HOH
201
4
HOH
HOH
701
A
HOH
202
4
HOH
HOH
702
A
HOH
203
4
HOH
HOH
703
A
HOH
204
4
HOH
HOH
704
A
HOH
205
4
HOH
HOH
705
A
HOH
206
4
HOH
HOH
706
A
HOH
207
4
HOH
HOH
707
A
HOH
208
4
HOH
HOH
708
A
HOH
209
4
HOH
HOH
709
A
HOH
210
4
HOH
HOH
710
A
HOH
211
4
HOH
HOH
711
A
HOH
212
4
HOH
HOH
712
A
HOH
213
4
HOH
HOH
713
A
HOH
214
4
HOH
HOH
714
A
HOH
215
4
HOH
HOH
715
A
HOH
216
4
HOH
HOH
716
A
HOH
217
4
HOH
HOH
717
A
HOH
218
4
HOH
HOH
718
A
HOH
219
4
HOH
HOH
719
A
HOH
220
4
HOH
HOH
720
A
HOH
221
4
HOH
HOH
721
A
HOH
222
4
HOH
HOH
722
A
n
1
77
A
SER
78
n
2
SER
78
A
ARG
79
n
3
ARG
79
A
LEU
80
n
4
LEU
80
A
SER
81
n
5
SER
81
A
VAL
82
n
6
VAL
82
A
ALA
83
n
7
ALA
83
A
PRO
84
n
8
PRO
84
A
GLU
85
n
9
GLU
85
A
MSE
86
n
10
MSE
86
A
ASP
87
n
11
ASP
87
A
ILE
88
n
12
ILE
88
A
MSE
89
n
13
MSE
89
A
ASP
90
n
14
ASP
90
A
TYR
91
n
15
TYR
91
A
CYS
92
n
16
CYS
92
A
ALA
93
n
17
LYS
93
A
LYS
94
n
18
LYS
94
A
GLU
95
n
19
GLU
95
A
TRP
96
n
20
TRP
96
A
ARG
97
n
21
ARG
97
A
GLY
98
n
22
GLY
98
A
ASN
99
n
23
ASN
99
A
THR
100
n
24
THR
100
A
ALA
101
n
25
GLN
101
A
LYS
102
n
26
LYS
102
A
ALA
103
n
27
ALA
103
A
THR
104
n
28
THR
104
A
CYS
105
n
29
CYS
105
A
MSE
106
n
30
MSE
106
A
LYS
107
n
31
LYS
107
A
MSE
108
n
32
MSE
108
A
GLY
109
n
33
GLY
109
A
TYR
110
n
34
TYR
110
A
GLU
111
n
35
GLU
111
A
GLU
112
n
36
GLU
112
A
VAL
113
n
37
VAL
113
A
SER
114
n
38
SER
114
A
ALA
115
n
39
GLN
115
A
LYS
116
n
40
LYS
116
A
PHE
117
n
41
PHE
117
A
THR
118
n
42
THR
118
A
SER
119
n
43
SER
119
A
ILE
120
n
44
ILE
120
A
ARG
121
n
45
ARG
121
A
ARG
122
n
46
ARG
122
A
VAL
123
n
47
VAL
123
A
ARG
124
n
48
ARG
124
A
GLY
125
n
49
GLY
125
A
ASP
126
n
50
ASP
126
A
ASN
127
n
51
ASN
127
A
TYR
128
n
52
TYR
128
A
CYS
129
n
53
CYS
129
A
ALA
130
n
54
ALA
130
A
LEU
131
n
55
LEU
131
A
ARG
132
n
56
ARG
132
A
ALA
133
n
57
ALA
133
A
THR
134
n
58
THR
134
A
LEU
135
n
59
LEU
135
A
PHE
136
n
60
PHE
136
A
GLN
137
n
61
GLN
137
A
ALA
138
n
62
ALA
138
A
MSE
139
n
63
MSE
139
A
SER
140
n
64
SER
140
A
GLN
141
n
65
GLN
141
A
ALA
142
n
66
ALA
142
A
VAL
143
n
67
VAL
143
A
GLY
144
n
68
GLY
144
A
LEU
145
n
69
LEU
145
A
PRO
146
n
70
PRO
146
A
PRO
147
n
71
PRO
147
A
TRP
148
n
72
TRP
148
A
LEU
149
n
73
LEU
149
A
GLN
150
n
74
GLN
150
A
ASP
151
n
75
ASP
151
A
PRO
152
n
76
PRO
152
A
GLU
153
n
77
GLU
153
A
LEU
154
n
78
LEU
154
A
MSE
155
n
79
MSE
155
A
LEU
156
n
80
LEU
156
A
LEU
157
n
81
LEU
157
A
PRO
158
n
82
PRO
158
A
GLU
159
n
83
GLU
159
A
LYS
160
n
84
LYS
160
A
LEU
161
n
85
LEU
161
A
ILE
162
n
86
ILE
162
A
SER
163
n
87
SER
163
A
LYS
164
n
88
LYS
164
A
TYR
165
n
89
TYR
165
A
ASN
166
n
90
ASN
166
A
TRP
167
n
91
TRP
167
A
ILE
168
n
92
ILE
168
A
LYS
169
n
93
LYS
169
A
GLN
170
n
94
GLN
170
A
TRP
171
n
95
TRP
171
A
ALA
172
n
96
LYS
172
A
LEU
173
n
97
LEU
173
A
n
98
174
A
n
99
175
A
n
100
176
A
n
101
177
A
n
102
178
A
n
103
179
A
n
104
180
A
n
105
181
A
n
106
182
A
ASP
183
n
107
ASP
183
A
LEU
184
n
108
LEU
184
A
VAL
185
n
109
VAL
185
A
ASP
186
n
110
ASP
186
A
LYS
187
n
111
LYS
187
A
ILE
188
n
112
ILE
188
A
LYS
189
n
113
LYS
189
A
GLU
190
n
114
GLU
190
A
SER
191
n
115
SER
191
A
LEU
192
n
116
LEU
192
A
THR
193
n
117
THR
193
A
LEU
194
n
118
LEU
194
A
LEU
195
n
119
LEU
195
A
ARG
196
n
120
ARG
196
A
LYS
197
n
121
LYS
197
A
LYS
198
n
122
LYS
198
A
TRP
199
n
123
TRP
199
A
ALA
200
n
124
ALA
200
A
GLY
201
n
125
GLY
201
A
LEU
202
n
126
LEU
202
A
ALA
203
n
127
ALA
203
A
GLU
204
n
128
GLU
204
A
MSE
205
n
129
MSE
205
A
ALA
206
n
130
ARG
206
A
THR
207
n
131
THR
207
A
ALA
208
n
132
ALA
208
A
GLU
209
n
133
GLU
209
A
ALA
210
n
134
ALA
210
A
ARG
211
n
135
ARG
211
A
ALA
212
n
136
GLN
212
A
ILE
213
n
137
ILE
213
A
ALA
214
n
138
ALA
214
A
CYS
215
n
139
CYS
215
A
ASP
216
n
140
ASP
216
A
GLU
217
n
141
GLU
217
A
LEU
218
n
142
LEU
218
A
PHE
219
n
143
PHE
219
A
THR
220
n
144
THR
220
A
ASN
221
n
145
ASN
221
A
GLU
222
n
146
GLU
222
A
ALA
223
n
147
ALA
223
A
GLU
224
n
148
GLU
224
A
GLU
225
n
149
GLU
225
A
TYR
226
n
150
TYR
226
A
SER
227
n
151
SER
227
A
LEU
228
n
152
LEU
228
A
TYR
229
n
153
TYR
229
A
GLU
230
n
154
GLU
230
A
ALA
231
n
155
ALA
231
A
VAL
232
n
156
VAL
232
A
LYS
233
n
157
LYS
233
A
PHE
234
n
158
PHE
234
A
LEU
235
n
159
LEU
235
A
MSE
236
n
160
MSE
236
A
LEU
237
n
161
LEU
237
A
ASN
238
n
162
ASN
238
A
ARG
239
n
163
ARG
239
A
ALA
240
n
164
ALA
240
A
ILE
241
n
165
ILE
241
A
GLU
242
n
166
GLU
242
A
LEU
243
n
167
LEU
243
A
TYR
244
n
168
TYR
244
A
ASN
245
n
169
ASN
245
A
ASP
246
n
170
ASP
246
A
ALA
247
n
171
LYS
247
A
GLU
248
n
172
GLU
248
A
ALA
249
n
173
LYS
249
A
GLY
250
n
174
GLY
250
A
ALA
251
n
175
LYS
251
A
ALA
252
n
176
GLU
252
A
VAL
253
n
177
VAL
253
A
PRO
254
n
178
PRO
254
A
PHE
255
n
179
PHE
255
A
PHE
256
n
180
PHE
256
A
SER
257
n
181
SER
257
A
VAL
258
n
182
VAL
258
A
LEU
259
n
183
LEU
259
A
LEU
260
n
184
LEU
260
A
PHE
261
n
185
PHE
261
A
ALA
262
n
186
ALA
262
A
ARG
263
n
187
ARG
263
A
ASP
264
n
188
ASP
264
A
THR
265
n
189
THR
265
A
SER
266
n
190
SER
266
A
ASN
267
n
191
ASN
267
A
ASP
268
n
192
ASP
268
A
PRO
269
n
193
PRO
269
A
GLY
270
n
194
GLY
270
A
GLN
271
n
195
GLN
271
A
LEU
272
n
196
LEU
272
A
LEU
273
n
197
LEU
273
A
ARG
274
n
198
ARG
274
A
ASN
275
n
199
ASN
275
A
HIS
276
n
200
HIS
276
A
LEU
277
n
201
LEU
277
A
ASN
278
n
202
ASN
278
A
GLN
279
n
203
GLN
279
A
VAL
280
n
204
VAL
280
A
GLY
281
n
205
GLY
281
A
HIS
282
n
206
HIS
282
A
THR
283
n
207
THR
283
A
GLY
284
n
208
GLY
284
A
GLY
285
n
209
GLY
285
A
LEU
286
n
210
LEU
286
A
GLU
287
n
211
GLU
287
A
GLN
288
n
212
GLN
288
A
VAL
289
n
213
VAL
289
A
GLU
290
n
214
GLU
290
A
MSE
291
n
215
MSE
291
A
PHE
292
n
216
PHE
292
A
LEU
293
n
217
LEU
293
A
LEU
294
n
218
LEU
294
A
ALA
295
n
219
ALA
295
A
TYR
296
n
220
TYR
296
A
ALA
297
n
221
ALA
297
A
VAL
298
n
222
VAL
298
A
ARG
299
n
223
ARG
299
A
HIS
300
n
224
HIS
300
A
THR
301
n
225
THR
301
A
ILE
302
n
226
ILE
302
A
GLN
303
n
227
GLN
303
A
VAL
304
n
228
VAL
304
A
TYR
305
n
229
TYR
305
A
ARG
306
n
230
ARG
306
A
LEU
307
n
231
LEU
307
A
SER
308
n
232
SER
308
A
LYS
309
n
233
LYS
309
A
TYR
310
n
234
TYR
310
A
ASN
311
n
235
ASN
311
A
THR
312
n
236
THR
312
A
GLU
313
n
237
GLU
313
A
GLU
314
n
238
GLU
314
A
PHE
315
n
239
PHE
315
A
ILE
316
n
240
ILE
316
A
THR
317
n
241
THR
317
A
VAL
318
n
242
VAL
318
A
TYR
319
n
243
TYR
319
A
PRO
320
n
244
PRO
320
A
THR
321
n
245
THR
321
A
ASP
322
n
246
ASP
322
A
PRO
323
n
247
PRO
323
A
PRO
324
n
248
PRO
324
A
ALA
325
n
249
LYS
325
A
ASP
326
n
250
ASP
326
A
TRP
327
n
251
TRP
327
A
PRO
328
n
252
PRO
328
A
VAL
329
n
253
VAL
329
A
VAL
330
n
254
VAL
330
A
THR
331
n
255
THR
331
A
LEU
332
n
256
LEU
332
A
ILE
333
n
257
ILE
333
A
ALA
334
n
258
ALA
334
A
GLU
335
n
259
GLU
335
A
ASP
336
n
260
ASP
336
A
ASP
337
n
261
ASP
337
A
ALA
338
n
262
ARG
338
A
HIS
339
n
263
HIS
339
A
TYR
340
n
264
TYR
340
A
ASN
341
n
265
ASN
341
A
ILE
342
n
266
ILE
342
A
PRO
343
n
267
PRO
343
A
VAL
344
n
268
VAL
344
A
ARG
345
n
269
ARG
345
A
n
270
346
A
n
271
347
A
n
272
348
A
n
273
349
A
n
274
350
A
n
275
351
A
n
276
352
A
author_and_software_defined_assembly
PISA
1
monomeric
A
MSE
86
SELENOMETHIONINE
A
MSE
10
MET
A
MSE
89
SELENOMETHIONINE
A
MSE
13
MET
A
MSE
106
SELENOMETHIONINE
A
MSE
30
MET
A
MSE
108
SELENOMETHIONINE
A
MSE
32
MET
A
MSE
139
SELENOMETHIONINE
A
MSE
63
MET
A
MSE
155
SELENOMETHIONINE
A
MSE
79
MET
A
MSE
205
SELENOMETHIONINE
A
MSE
129
MET
A
MSE
236
SELENOMETHIONINE
A
MSE
160
MET
A
MSE
291
SELENOMETHIONINE
A
MSE
215
MET
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
MSE
86
A
N
MSE
10
A
O
ILE
120
A
O
ILE
44
A
N
SER
119
A
N
SER
43
A
O
VAL
344
A
O
VAL
268
A
O
ASN
341
A
O
ASN
265
A
N
ILE
333
A
N
ILE
257
A
O
ALA
334
A
O
ALA
258
A
N
TYR
305
A
N
TYR
229
A
N
ILE
302
A
N
ILE
226
A
O
TYR
319
A
O
TYR
243
1
A
CG
LYS
93
A
CG
LYS
17
1
Y
1
A
CD
LYS
93
A
CD
LYS
17
1
Y
1
A
CE
LYS
93
A
CE
LYS
17
1
Y
1
A
NZ
LYS
93
A
NZ
LYS
17
1
Y
1
A
CG
GLN
101
A
CG
GLN
25
1
Y
1
A
CD
GLN
101
A
CD
GLN
25
1
Y
1
A
OE1
GLN
101
A
OE1
GLN
25
1
Y
1
A
NE2
GLN
101
A
NE2
GLN
25
1
Y
1
A
CG
GLN
115
A
CG
GLN
39
1
Y
1
A
CD
GLN
115
A
CD
GLN
39
1
Y
1
A
OE1
GLN
115
A
OE1
GLN
39
1
Y
1
A
NE2
GLN
115
A
NE2
GLN
39
1
Y
1
A
CG
LYS
172
A
CG
LYS
96
1
Y
1
A
CD
LYS
172
A
CD
LYS
96
1
Y
1
A
CE
LYS
172
A
CE
LYS
96
1
Y
1
A
NZ
LYS
172
A
NZ
LYS
96
1
Y
1
A
CG
ARG
206
A
CG
ARG
130
1
Y
1
A
CD
ARG
206
A
CD
ARG
130
1
Y
1
A
NE
ARG
206
A
NE
ARG
130
1
Y
1
A
CZ
ARG
206
A
CZ
ARG
130
1
Y
1
A
NH1
ARG
206
A
NH1
ARG
130
1
Y
1
A
NH2
ARG
206
A
NH2
ARG
130
1
Y
1
A
CG
GLN
212
A
CG
GLN
136
1
Y
1
A
CD
GLN
212
A
CD
GLN
136
1
Y
1
A
OE1
GLN
212
A
OE1
GLN
136
1
Y
1
A
NE2
GLN
212
A
NE2
GLN
136
1
Y
1
A
CG
LYS
247
A
CG
LYS
171
1
Y
1
A
CD
LYS
247
A
CD
LYS
171
1
Y
1
A
CE
LYS
247
A
CE
LYS
171
1
Y
1
A
NZ
LYS
247
A
NZ
LYS
171
1
Y
1
A
CG
LYS
249
A
CG
LYS
173
1
Y
1
A
CD
LYS
249
A
CD
LYS
173
1
Y
1
A
CE
LYS
249
A
CE
LYS
173
1
Y
1
A
NZ
LYS
249
A
NZ
LYS
173
1
Y
1
A
CG
LYS
251
A
CG
LYS
175
1
Y
1
A
CD
LYS
251
A
CD
LYS
175
1
Y
1
A
CE
LYS
251
A
CE
LYS
175
1
Y
1
A
NZ
LYS
251
A
NZ
LYS
175
1
Y
1
A
CG
GLU
252
A
CG
GLU
176
1
Y
1
A
CD
GLU
252
A
CD
GLU
176
1
Y
1
A
OE1
GLU
252
A
OE1
GLU
176
1
Y
1
A
OE2
GLU
252
A
OE2
GLU
176
1
Y
1
A
CG
LYS
325
A
CG
LYS
249
1
Y
1
A
CD
LYS
325
A
CD
LYS
249
1
Y
1
A
CE
LYS
325
A
CE
LYS
249
1
Y
1
A
NZ
LYS
325
A
NZ
LYS
249
1
Y
1
A
CG
ARG
338
A
CG
ARG
262
1
Y
1
A
CD
ARG
338
A
CD
ARG
262
1
Y
1
A
NE
ARG
338
A
NE
ARG
262
1
Y
1
A
CZ
ARG
338
A
CZ
ARG
262
1
Y
1
A
NH1
ARG
338
A
NH1
ARG
262
1
Y
1
A
NH2
ARG
338
A
NH2
ARG
262
1
Y
1
A
GLY
77
A
GLY
1
1
Y
1
A
GLY
174
A
GLY
98
1
Y
1
A
LEU
175
A
LEU
99
1
Y
1
A
LYS
176
A
LYS
100
1
Y
1
A
PHE
177
A
PHE
101
1
Y
1
A
ASP
178
A
ASP
102
1
Y
1
A
GLY
179
A
GLY
103
1
Y
1
A
LYS
180
A
LYS
104
1
Y
1
A
ASN
181
A
ASN
105
1
Y
1
A
GLU
182
A
GLU
106
1
Y
1
A
VAL
346
A
VAL
270
1
Y
1
A
CYS
347
A
CYS
271
1
Y
1
A
GLU
348
A
GLU
272
1
Y
1
A
GLU
349
A
GLU
273
1
Y
1
A
THR
350
A
THR
274
1
Y
1
A
SER
351
A
SER
275
1
Y
1
A
LEU
352
A
LEU
276
1
Y
1
A
A
O
O
HOH
HOH
511
638
2.01
1
A
A
O
O
HOH
HOH
581
608
2.03
1
A
A
NE2
OH
GLN
TYR
288
319
2.06
1
A
A
O
O
SER
HOH
163
511
2.09
1
A
A
SG
S2
CYS
BME
92
401
2.10
1
A
A
O
O
HOH
HOH
511
564
2.13
1
A
A
O
O
HOH
HOH
511
616
2.15
1
A
A
O
O
HOH
HOH
685
716
2.18
1
A
A
O
O
HOH
HOH
511
670
2.19
1
A
A
O
O
HOH
HOH
600
692
2.19
1
A
A
CB
SG
CYS
CYS
129
129
-0.146
0.016
1.812
1.666
B
B
N
1
A
A
CB
SG
CYS
CYS
215
215
-0.097
0.016
1.812
1.715
N
1
A
A
CD1
CE1
TYR
TYR
226
226
0.090
0.015
1.389
1.479
N
1
A
PHE
219
-105.95
72.39
1
A
SER
266
-142.23
42.15
1
A
HIS
276
-125.40
-65.26
1
A
HIS
282
-123.82
-58.16
1
A
ASP
337
61.99
-1.41
25.236
-0.29
0.00
0.00
0.50
0.00
-0.21
0.965
0.949
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.21547
0.18039
0.18215
1.60
39.376
1945
37444
36961
5.0
99.08
1.667
0.058
RANDOM
1
THROUGHOUT
SAD
0.086
0.088
0.80
0.80
1.40
MAXIMUM LIKELIHOOD
BABINET MODEL WITH MASK
1.60
39.376
222
2311
16
0
2073
0.030
0.022
2152
2.201
1.965
2922
5.572
5.000
263
31.680
24.000
100
13.301
15.000
366
15.116
15.000
14
0.160
0.200
324
0.013
0.021
1623
1.544
1.500
1304
2.575
2.000
2101
3.789
3.000
848
5.697
4.500
818
0.282
0.270
1.646
141
2670
20
98.46
1.6
39.376
4KSJ
74141
36961
2.0
2.0
0.061
1
36.6
3.8
99.9
0.584
1.6
1.66
3.1
1
3.7
100
0.416
1.66
1.72
4.5
1
3.7
100
data collection
ADSC
Quantum
phasing
SHARP
refinement
REFMAC
5.5.0109
data reduction
HKL-2000
data scaling
SCALEPACK
Fam105b
Crystal structure of the OTU domain of Gumby/Fam105B at 1.6 angstrom
1
N
N
2
N
N
3
N
N
3
N
N
4
N
N
A
ILE
88
A
ILE
12
HELX_P
A
TRP
96
A
TRP
20
1
1
9
A
THR
100
A
THR
24
HELX_P
A
GLN
115
A
GLN
39
1
2
16
A
TYR
128
A
TYR
52
HELX_P
A
GLN
141
A
GLN
65
1
3
14
A
PRO
146
A
PRO
70
HELX_P
A
ASP
151
A
ASP
75
1
4
6
A
PRO
152
A
PRO
76
HELX_P
A
TYR
165
A
TYR
89
1
5
14
A
ASN
166
A
ASN
90
HELX_P
A
TRP
171
A
TRP
95
5
6
6
A
LEU
184
A
LEU
108
HELX_P
A
GLU
204
A
GLU
128
1
7
21
A
THR
207
A
THR
131
HELX_P
A
PHE
219
A
PHE
143
1
8
13
A
GLU
222
A
GLU
146
HELX_P
A
LYS
249
A
LYS
173
1
9
28
A
PRO
254
A
PRO
178
HELX_P
A
ARG
263
A
ARG
187
1
10
10
A
ASP
268
A
ASP
192
HELX_P
A
HIS
276
A
HIS
200
1
11
9
A
LEU
277
A
LEU
201
HELX_P
A
VAL
280
A
VAL
204
5
12
4
A
GLU
287
A
GLU
211
HELX_P
A
ARG
299
A
ARG
223
1
13
13
A
SER
308
A
SER
232
HELX_P
A
TYR
310
A
TYR
234
5
14
3
A
THR
312
A
THR
236
HELX_P
A
GLU
314
A
GLU
238
5
15
3
covale
1.314
A
GLU
85
A
C
GLU
9
1_555
A
MSE
86
A
N
MSE
10
1_555
covale
1.349
A
MSE
86
A
C
MSE
10
1_555
A
ASP
87
A
N
ASP
11
1_555
covale
1.344
A
ILE
88
A
C
ILE
12
1_555
A
MSE
89
A
N
MSE
13
1_555
covale
1.319
A
MSE
89
A
C
MSE
13
1_555
A
ASP
90
A
N
ASP
14
1_555
covale
1.358
A
CYS
105
A
C
CYS
29
1_555
A
MSE
106
A
N
MSE
30
1_555
covale
1.332
A
MSE
106
A
C
MSE
30
1_555
A
LYS
107
A
N
LYS
31
1_555
covale
1.330
A
LYS
107
A
C
LYS
31
1_555
A
MSE
108
A
N
MSE
32
1_555
covale
1.330
A
MSE
108
A
C
MSE
32
1_555
A
GLY
109
A
N
GLY
33
1_555
covale
1.343
A
ALA
138
A
C
ALA
62
1_555
A
MSE
139
A
N
MSE
63
1_555
covale
1.337
A
MSE
139
A
C
MSE
63
1_555
A
SER
140
A
N
SER
64
1_555
covale
1.324
A
LEU
154
A
C
LEU
78
1_555
A
MSE
155
A
N
MSE
79
1_555
covale
1.344
A
MSE
155
A
C
MSE
79
1_555
A
LEU
156
A
N
LEU
80
1_555
covale
1.334
A
GLU
204
A
C
GLU
128
1_555
A
MSE
205
A
N
MSE
129
1_555
covale
1.326
A
MSE
205
A
C
MSE
129
1_555
A
ARG
206
A
N
ARG
130
1_555
covale
1.332
A
LEU
235
A
C
LEU
159
1_555
A
MSE
236
A
N
MSE
160
1_555
covale
1.333
A
MSE
236
A
C
MSE
160
1_555
A
LEU
237
A
N
LEU
161
1_555
covale
1.347
A
GLU
290
A
C
GLU
214
1_555
A
MSE
291
A
N
MSE
215
1_555
covale
1.336
A
MSE
291
A
C
MSE
215
1_555
A
PHE
292
A
N
PHE
216
1_555
HYDROLASE
OTU domain, deubiquitinase, ubiquitin, HYDROLASE
A
TYR
319
A
TYR
243
1
A
PRO
320
A
PRO
244
-9.50
F105B_HUMAN
UNP
1
79
Q96BN8
RLSVAPEMDIMDYCKKEWRGNTQKATCMKMGYEEVSQKFTSIRRVRGDNYCALRATLFQAMSQAVGLPPWLQDPELMLLP
EKLISKYNWIKQWKLGLKFDGKNEDLVDKIKESLTLLRKKWAGLAEMRTAEARQIACDELFTNEAEEYSLYEAVKFLMLN
RAIELYNDKEKGKEVPFFSVLLFARDTSNDPGQLLRNHLNQVGHTGGLEQVEMFLLAYAVRHTIQVYRLSKYNTEEFITV
YPTDPPKDWPVVTLIAEDDRHYNIPVRVCEETSL
79
352
4KSJ
79
352
Q96BN8
A
1
3
276
1
EXPRESSION TAG
GLY
77
4KSJ
A
Q96BN8
UNP
1
1
EXPRESSION TAG
SER
78
4KSJ
A
Q96BN8
UNP
2
6
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
A
MSE
86
A
MSE
10
A
ASP
87
A
ASP
11
A
SER
119
A
SER
43
A
ARG
121
A
ARG
45
A
TYR
340
A
TYR
264
A
VAL
344
A
VAL
268
A
VAL
329
A
VAL
253
A
ALA
334
A
ALA
258
A
THR
301
A
THR
225
A
ARG
306
A
ARG
230
A
ILE
316
A
ILE
240
A
TYR
319
A
TYR
243
BINDING SITE FOR RESIDUE BME A 401
Software
4
BINDING SITE FOR RESIDUE GOL A 402
Software
5
BINDING SITE FOR RESIDUE GOL A 403
Software
5
A
CYS
92
A
CYS
16
4
1_555
A
LYS
93
A
LYS
17
4
1_555
A
LYS
107
A
LYS
31
4
1_555
A
GLU
111
A
GLU
35
4
1_555
A
TRP
167
A
TRP
91
5
1_555
A
ASP
268
A
ASP
192
5
1_555
A
GLY
270
A
GLY
194
5
1_555
A
GLN
271
A
GLN
195
5
1_555
A
ARG
274
A
ARG
198
5
1_555
A
HIS
276
A
HIS
200
5
1_555
A
GLY
284
A
GLY
208
5
1_555
A
GLY
285
A
GLY
209
5
1_555
A
GLU
287
A
GLU
211
5
1_555
A
GLU
290
A
GLU
214
5
1_555
19
P 21 21 21