0.023068 0.000000 0.000000 0.000000 0.013924 0.000000 0.000000 0.000000 0.010616 0.00000 0.00000 0.00000 Ceccarelli, D.F. Juang, Y.-C. Sicheri, F. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 90.00 90.00 43.350 71.820 94.200 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C2 H6 O S 78.133 BETA-MERCAPTOETHANOL non-polymer C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C3 H8 O3 92.094 GLYCEROL GLYCERIN; PROPANE-1,2,3-TRIOL non-polymer C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 Se 196.106 n SELENOMETHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking UK Nature NATUAS 0006 1476-4687 498 318 324 10.1038/nature12296 23708998 The linear ubiquitin-specific deubiquitinase gumby regulates angiogenesis. 2013 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD 2008-11-07 ADSC QUANTUM 315 Si(111) SINGLE WAVELENGTH M x-ray 1 0.97919 1.0 24-ID-C APS 0.97919 SYNCHROTRON APS BEAMLINE 24-ID-C 32495.859 Protein FAM105B OTU domain (unp residues 79-352) 1 man polymer 78.133 BETA-MERCAPTOETHANOL 1 syn non-polymer 92.094 GLYCEROL 2 syn non-polymer 18.015 water 222 nat water no yes GSRLSVAPE(MSE)DI(MSE)DYCKKEWRGNTQKATC(MSE)K(MSE)GYEEVSQKFTSIRRVRGDNYCALRATLFQA (MSE)SQAVGLPPWLQDPEL(MSE)LLPEKLISKYNWIKQWKLGLKFDGKNEDLVDKIKESLTLLRKKWAGLAE(MSE)R TAEARQIACDELFTNEAEEYSLYEAVKFL(MSE)LNRAIELYNDKEKGKEVPFFSVLLFARDTSNDPGQLLRNHLNQVGH TGGLEQVE(MSE)FLLAYAVRHTIQVYRLSKYNTEEFITVYPTDPPKDWPVVTLIAEDDRHYNIPVRVCEETSL GSRLSVAPEMDIMDYCKKEWRGNTQKATCMKMGYEEVSQKFTSIRRVRGDNYCALRATLFQAMSQAVGLPPWLQDPELML LPEKLISKYNWIKQWKLGLKFDGKNEDLVDKIKESLTLLRKKWAGLAEMRTAEARQIACDELFTNEAEEYSLYEAVKFLM LNRAIELYNDKEKGKEVPFFSVLLFARDTSNDPGQLLRNHLNQVGHTGGLEQVEMFLLAYAVRHTIQVYRLSKYNTEEFI TVYPTDPPKDWPVVTLIAEDDRHYNIPVRVCEETSL A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human sample FAM105B 9606 Homo sapiens 469008 Escherichia coli BL21(DE3) plasmid pRoEX 1 2.07 45.48 VAPOR DIFFUSION, HANGING DROP 6.0 100mM MES, 200mM MgCl2, 19% PEG3350, pH 6.0, VAPOR DIFFUSION, HANGING DROP citation citation_author repository Initial release Structure summary Data collection Database references 1 0 2013-06-05 1 1 2014-11-12 1 2 2018-04-18 _citation.journal_volume _citation.page_first _citation.page_last _citation.pdbx_database_id_PubMed _citation.title _citation_author.name RCSB Y RCSB 2013-05-17 REL REL BME BETA-MERCAPTOETHANOL GOL GLYCEROL HOH water BME 800 2 BME BME 401 A GOL 900 3 GOL GOL 402 A GOL 901 3 GOL GOL 403 A HOH 1 4 HOH HOH 501 A HOH 2 4 HOH HOH 502 A HOH 3 4 HOH HOH 503 A HOH 4 4 HOH HOH 504 A HOH 5 4 HOH HOH 505 A HOH 6 4 HOH HOH 506 A HOH 7 4 HOH HOH 507 A HOH 8 4 HOH HOH 508 A HOH 9 4 HOH HOH 509 A HOH 10 4 HOH HOH 510 A HOH 11 4 HOH HOH 511 A HOH 12 4 HOH HOH 512 A HOH 13 4 HOH HOH 513 A HOH 14 4 HOH HOH 514 A HOH 15 4 HOH HOH 515 A HOH 16 4 HOH HOH 516 A HOH 17 4 HOH HOH 517 A HOH 18 4 HOH HOH 518 A HOH 19 4 HOH HOH 519 A HOH 20 4 HOH HOH 520 A HOH 21 4 HOH HOH 521 A HOH 22 4 HOH HOH 522 A HOH 23 4 HOH HOH 523 A HOH 24 4 HOH HOH 524 A HOH 25 4 HOH HOH 525 A HOH 26 4 HOH HOH 526 A HOH 27 4 HOH HOH 527 A HOH 28 4 HOH HOH 528 A HOH 29 4 HOH HOH 529 A HOH 30 4 HOH HOH 530 A HOH 31 4 HOH HOH 531 A HOH 32 4 HOH HOH 532 A HOH 33 4 HOH HOH 533 A HOH 34 4 HOH HOH 534 A HOH 35 4 HOH HOH 535 A HOH 36 4 HOH HOH 536 A HOH 37 4 HOH HOH 537 A HOH 38 4 HOH HOH 538 A HOH 39 4 HOH HOH 539 A HOH 40 4 HOH HOH 540 A HOH 41 4 HOH HOH 541 A HOH 42 4 HOH HOH 542 A HOH 43 4 HOH HOH 543 A HOH 44 4 HOH HOH 544 A HOH 45 4 HOH HOH 545 A HOH 46 4 HOH HOH 546 A HOH 47 4 HOH HOH 547 A HOH 48 4 HOH HOH 548 A HOH 49 4 HOH HOH 549 A HOH 50 4 HOH HOH 550 A HOH 51 4 HOH HOH 551 A HOH 52 4 HOH HOH 552 A HOH 53 4 HOH HOH 553 A HOH 54 4 HOH HOH 554 A HOH 55 4 HOH HOH 555 A HOH 56 4 HOH HOH 556 A HOH 57 4 HOH HOH 557 A HOH 58 4 HOH HOH 558 A HOH 59 4 HOH HOH 559 A HOH 60 4 HOH HOH 560 A HOH 61 4 HOH HOH 561 A HOH 62 4 HOH HOH 562 A HOH 63 4 HOH HOH 563 A HOH 64 4 HOH HOH 564 A HOH 65 4 HOH HOH 565 A HOH 66 4 HOH HOH 566 A HOH 67 4 HOH HOH 567 A HOH 68 4 HOH HOH 568 A HOH 69 4 HOH HOH 569 A HOH 70 4 HOH HOH 570 A HOH 71 4 HOH HOH 571 A HOH 72 4 HOH HOH 572 A HOH 73 4 HOH HOH 573 A HOH 74 4 HOH HOH 574 A HOH 75 4 HOH HOH 575 A HOH 76 4 HOH HOH 576 A HOH 77 4 HOH HOH 577 A HOH 78 4 HOH HOH 578 A HOH 79 4 HOH HOH 579 A HOH 80 4 HOH HOH 580 A HOH 81 4 HOH HOH 581 A HOH 82 4 HOH HOH 582 A HOH 83 4 HOH HOH 583 A HOH 84 4 HOH HOH 584 A HOH 85 4 HOH HOH 585 A HOH 86 4 HOH HOH 586 A HOH 87 4 HOH HOH 587 A HOH 88 4 HOH HOH 588 A HOH 89 4 HOH HOH 589 A HOH 90 4 HOH HOH 590 A HOH 91 4 HOH HOH 591 A HOH 92 4 HOH HOH 592 A HOH 93 4 HOH HOH 593 A HOH 94 4 HOH HOH 594 A HOH 95 4 HOH HOH 595 A HOH 96 4 HOH HOH 596 A HOH 97 4 HOH HOH 597 A HOH 98 4 HOH HOH 598 A HOH 99 4 HOH HOH 599 A HOH 100 4 HOH HOH 600 A HOH 101 4 HOH HOH 601 A HOH 102 4 HOH HOH 602 A HOH 103 4 HOH HOH 603 A HOH 104 4 HOH HOH 604 A HOH 105 4 HOH HOH 605 A HOH 106 4 HOH HOH 606 A HOH 107 4 HOH HOH 607 A HOH 108 4 HOH HOH 608 A HOH 109 4 HOH HOH 609 A HOH 110 4 HOH HOH 610 A HOH 111 4 HOH HOH 611 A HOH 112 4 HOH HOH 612 A HOH 113 4 HOH HOH 613 A HOH 114 4 HOH HOH 614 A HOH 115 4 HOH HOH 615 A HOH 116 4 HOH HOH 616 A HOH 117 4 HOH HOH 617 A HOH 118 4 HOH HOH 618 A HOH 119 4 HOH HOH 619 A HOH 120 4 HOH HOH 620 A HOH 121 4 HOH HOH 621 A HOH 122 4 HOH HOH 622 A HOH 123 4 HOH HOH 623 A HOH 124 4 HOH HOH 624 A HOH 125 4 HOH HOH 625 A HOH 126 4 HOH HOH 626 A HOH 127 4 HOH HOH 627 A HOH 128 4 HOH HOH 628 A HOH 129 4 HOH HOH 629 A HOH 130 4 HOH HOH 630 A HOH 131 4 HOH HOH 631 A HOH 132 4 HOH HOH 632 A HOH 133 4 HOH HOH 633 A HOH 134 4 HOH HOH 634 A HOH 135 4 HOH HOH 635 A HOH 136 4 HOH HOH 636 A HOH 137 4 HOH HOH 637 A HOH 138 4 HOH HOH 638 A HOH 139 4 HOH HOH 639 A HOH 140 4 HOH HOH 640 A HOH 141 4 HOH HOH 641 A HOH 142 4 HOH HOH 642 A HOH 143 4 HOH HOH 643 A HOH 144 4 HOH HOH 644 A HOH 145 4 HOH HOH 645 A HOH 146 4 HOH HOH 646 A HOH 147 4 HOH HOH 647 A HOH 148 4 HOH HOH 648 A HOH 149 4 HOH HOH 649 A HOH 150 4 HOH HOH 650 A HOH 151 4 HOH HOH 651 A HOH 152 4 HOH HOH 652 A HOH 153 4 HOH HOH 653 A HOH 154 4 HOH HOH 654 A HOH 155 4 HOH HOH 655 A HOH 156 4 HOH HOH 656 A HOH 157 4 HOH HOH 657 A HOH 158 4 HOH HOH 658 A HOH 159 4 HOH HOH 659 A HOH 160 4 HOH HOH 660 A HOH 161 4 HOH HOH 661 A HOH 162 4 HOH HOH 662 A HOH 163 4 HOH HOH 663 A HOH 164 4 HOH HOH 664 A HOH 165 4 HOH HOH 665 A HOH 166 4 HOH HOH 666 A HOH 167 4 HOH HOH 667 A HOH 168 4 HOH HOH 668 A HOH 169 4 HOH HOH 669 A HOH 170 4 HOH HOH 670 A HOH 171 4 HOH HOH 671 A HOH 172 4 HOH HOH 672 A HOH 173 4 HOH HOH 673 A HOH 174 4 HOH HOH 674 A HOH 175 4 HOH HOH 675 A HOH 176 4 HOH HOH 676 A HOH 177 4 HOH HOH 677 A HOH 178 4 HOH HOH 678 A HOH 179 4 HOH HOH 679 A HOH 180 4 HOH HOH 680 A HOH 181 4 HOH HOH 681 A HOH 182 4 HOH HOH 682 A HOH 183 4 HOH HOH 683 A HOH 184 4 HOH HOH 684 A HOH 185 4 HOH HOH 685 A HOH 186 4 HOH HOH 686 A HOH 187 4 HOH HOH 687 A HOH 188 4 HOH HOH 688 A HOH 189 4 HOH HOH 689 A HOH 190 4 HOH HOH 690 A HOH 191 4 HOH HOH 691 A HOH 192 4 HOH HOH 692 A HOH 193 4 HOH HOH 693 A HOH 194 4 HOH HOH 694 A HOH 195 4 HOH HOH 695 A HOH 196 4 HOH HOH 696 A HOH 197 4 HOH HOH 697 A HOH 198 4 HOH HOH 698 A HOH 199 4 HOH HOH 699 A HOH 200 4 HOH HOH 700 A HOH 201 4 HOH HOH 701 A HOH 202 4 HOH HOH 702 A HOH 203 4 HOH HOH 703 A HOH 204 4 HOH HOH 704 A HOH 205 4 HOH HOH 705 A HOH 206 4 HOH HOH 706 A HOH 207 4 HOH HOH 707 A HOH 208 4 HOH HOH 708 A HOH 209 4 HOH HOH 709 A HOH 210 4 HOH HOH 710 A HOH 211 4 HOH HOH 711 A HOH 212 4 HOH HOH 712 A HOH 213 4 HOH HOH 713 A HOH 214 4 HOH HOH 714 A HOH 215 4 HOH HOH 715 A HOH 216 4 HOH HOH 716 A HOH 217 4 HOH HOH 717 A HOH 218 4 HOH HOH 718 A HOH 219 4 HOH HOH 719 A HOH 220 4 HOH HOH 720 A HOH 221 4 HOH HOH 721 A HOH 222 4 HOH HOH 722 A n 1 77 A SER 78 n 2 SER 78 A ARG 79 n 3 ARG 79 A LEU 80 n 4 LEU 80 A SER 81 n 5 SER 81 A VAL 82 n 6 VAL 82 A ALA 83 n 7 ALA 83 A PRO 84 n 8 PRO 84 A GLU 85 n 9 GLU 85 A MSE 86 n 10 MSE 86 A ASP 87 n 11 ASP 87 A ILE 88 n 12 ILE 88 A MSE 89 n 13 MSE 89 A ASP 90 n 14 ASP 90 A TYR 91 n 15 TYR 91 A CYS 92 n 16 CYS 92 A ALA 93 n 17 LYS 93 A LYS 94 n 18 LYS 94 A GLU 95 n 19 GLU 95 A TRP 96 n 20 TRP 96 A ARG 97 n 21 ARG 97 A GLY 98 n 22 GLY 98 A ASN 99 n 23 ASN 99 A THR 100 n 24 THR 100 A ALA 101 n 25 GLN 101 A LYS 102 n 26 LYS 102 A ALA 103 n 27 ALA 103 A THR 104 n 28 THR 104 A CYS 105 n 29 CYS 105 A MSE 106 n 30 MSE 106 A LYS 107 n 31 LYS 107 A MSE 108 n 32 MSE 108 A GLY 109 n 33 GLY 109 A TYR 110 n 34 TYR 110 A GLU 111 n 35 GLU 111 A GLU 112 n 36 GLU 112 A VAL 113 n 37 VAL 113 A SER 114 n 38 SER 114 A ALA 115 n 39 GLN 115 A LYS 116 n 40 LYS 116 A PHE 117 n 41 PHE 117 A THR 118 n 42 THR 118 A SER 119 n 43 SER 119 A ILE 120 n 44 ILE 120 A ARG 121 n 45 ARG 121 A ARG 122 n 46 ARG 122 A VAL 123 n 47 VAL 123 A ARG 124 n 48 ARG 124 A GLY 125 n 49 GLY 125 A ASP 126 n 50 ASP 126 A ASN 127 n 51 ASN 127 A TYR 128 n 52 TYR 128 A CYS 129 n 53 CYS 129 A ALA 130 n 54 ALA 130 A LEU 131 n 55 LEU 131 A ARG 132 n 56 ARG 132 A ALA 133 n 57 ALA 133 A THR 134 n 58 THR 134 A LEU 135 n 59 LEU 135 A PHE 136 n 60 PHE 136 A GLN 137 n 61 GLN 137 A ALA 138 n 62 ALA 138 A MSE 139 n 63 MSE 139 A SER 140 n 64 SER 140 A GLN 141 n 65 GLN 141 A ALA 142 n 66 ALA 142 A VAL 143 n 67 VAL 143 A GLY 144 n 68 GLY 144 A LEU 145 n 69 LEU 145 A PRO 146 n 70 PRO 146 A PRO 147 n 71 PRO 147 A TRP 148 n 72 TRP 148 A LEU 149 n 73 LEU 149 A GLN 150 n 74 GLN 150 A ASP 151 n 75 ASP 151 A PRO 152 n 76 PRO 152 A GLU 153 n 77 GLU 153 A LEU 154 n 78 LEU 154 A MSE 155 n 79 MSE 155 A LEU 156 n 80 LEU 156 A LEU 157 n 81 LEU 157 A PRO 158 n 82 PRO 158 A GLU 159 n 83 GLU 159 A LYS 160 n 84 LYS 160 A LEU 161 n 85 LEU 161 A ILE 162 n 86 ILE 162 A SER 163 n 87 SER 163 A LYS 164 n 88 LYS 164 A TYR 165 n 89 TYR 165 A ASN 166 n 90 ASN 166 A TRP 167 n 91 TRP 167 A ILE 168 n 92 ILE 168 A LYS 169 n 93 LYS 169 A GLN 170 n 94 GLN 170 A TRP 171 n 95 TRP 171 A ALA 172 n 96 LYS 172 A LEU 173 n 97 LEU 173 A n 98 174 A n 99 175 A n 100 176 A n 101 177 A n 102 178 A n 103 179 A n 104 180 A n 105 181 A n 106 182 A ASP 183 n 107 ASP 183 A LEU 184 n 108 LEU 184 A VAL 185 n 109 VAL 185 A ASP 186 n 110 ASP 186 A LYS 187 n 111 LYS 187 A ILE 188 n 112 ILE 188 A LYS 189 n 113 LYS 189 A GLU 190 n 114 GLU 190 A SER 191 n 115 SER 191 A LEU 192 n 116 LEU 192 A THR 193 n 117 THR 193 A LEU 194 n 118 LEU 194 A LEU 195 n 119 LEU 195 A ARG 196 n 120 ARG 196 A LYS 197 n 121 LYS 197 A LYS 198 n 122 LYS 198 A TRP 199 n 123 TRP 199 A ALA 200 n 124 ALA 200 A GLY 201 n 125 GLY 201 A LEU 202 n 126 LEU 202 A ALA 203 n 127 ALA 203 A GLU 204 n 128 GLU 204 A MSE 205 n 129 MSE 205 A ALA 206 n 130 ARG 206 A THR 207 n 131 THR 207 A ALA 208 n 132 ALA 208 A GLU 209 n 133 GLU 209 A ALA 210 n 134 ALA 210 A ARG 211 n 135 ARG 211 A ALA 212 n 136 GLN 212 A ILE 213 n 137 ILE 213 A ALA 214 n 138 ALA 214 A CYS 215 n 139 CYS 215 A ASP 216 n 140 ASP 216 A GLU 217 n 141 GLU 217 A LEU 218 n 142 LEU 218 A PHE 219 n 143 PHE 219 A THR 220 n 144 THR 220 A ASN 221 n 145 ASN 221 A GLU 222 n 146 GLU 222 A ALA 223 n 147 ALA 223 A GLU 224 n 148 GLU 224 A GLU 225 n 149 GLU 225 A TYR 226 n 150 TYR 226 A SER 227 n 151 SER 227 A LEU 228 n 152 LEU 228 A TYR 229 n 153 TYR 229 A GLU 230 n 154 GLU 230 A ALA 231 n 155 ALA 231 A VAL 232 n 156 VAL 232 A LYS 233 n 157 LYS 233 A PHE 234 n 158 PHE 234 A LEU 235 n 159 LEU 235 A MSE 236 n 160 MSE 236 A LEU 237 n 161 LEU 237 A ASN 238 n 162 ASN 238 A ARG 239 n 163 ARG 239 A ALA 240 n 164 ALA 240 A ILE 241 n 165 ILE 241 A GLU 242 n 166 GLU 242 A LEU 243 n 167 LEU 243 A TYR 244 n 168 TYR 244 A ASN 245 n 169 ASN 245 A ASP 246 n 170 ASP 246 A ALA 247 n 171 LYS 247 A GLU 248 n 172 GLU 248 A ALA 249 n 173 LYS 249 A GLY 250 n 174 GLY 250 A ALA 251 n 175 LYS 251 A ALA 252 n 176 GLU 252 A VAL 253 n 177 VAL 253 A PRO 254 n 178 PRO 254 A PHE 255 n 179 PHE 255 A PHE 256 n 180 PHE 256 A SER 257 n 181 SER 257 A VAL 258 n 182 VAL 258 A LEU 259 n 183 LEU 259 A LEU 260 n 184 LEU 260 A PHE 261 n 185 PHE 261 A ALA 262 n 186 ALA 262 A ARG 263 n 187 ARG 263 A ASP 264 n 188 ASP 264 A THR 265 n 189 THR 265 A SER 266 n 190 SER 266 A ASN 267 n 191 ASN 267 A ASP 268 n 192 ASP 268 A PRO 269 n 193 PRO 269 A GLY 270 n 194 GLY 270 A GLN 271 n 195 GLN 271 A LEU 272 n 196 LEU 272 A LEU 273 n 197 LEU 273 A ARG 274 n 198 ARG 274 A ASN 275 n 199 ASN 275 A HIS 276 n 200 HIS 276 A LEU 277 n 201 LEU 277 A ASN 278 n 202 ASN 278 A GLN 279 n 203 GLN 279 A VAL 280 n 204 VAL 280 A GLY 281 n 205 GLY 281 A HIS 282 n 206 HIS 282 A THR 283 n 207 THR 283 A GLY 284 n 208 GLY 284 A GLY 285 n 209 GLY 285 A LEU 286 n 210 LEU 286 A GLU 287 n 211 GLU 287 A GLN 288 n 212 GLN 288 A VAL 289 n 213 VAL 289 A GLU 290 n 214 GLU 290 A MSE 291 n 215 MSE 291 A PHE 292 n 216 PHE 292 A LEU 293 n 217 LEU 293 A LEU 294 n 218 LEU 294 A ALA 295 n 219 ALA 295 A TYR 296 n 220 TYR 296 A ALA 297 n 221 ALA 297 A VAL 298 n 222 VAL 298 A ARG 299 n 223 ARG 299 A HIS 300 n 224 HIS 300 A THR 301 n 225 THR 301 A ILE 302 n 226 ILE 302 A GLN 303 n 227 GLN 303 A VAL 304 n 228 VAL 304 A TYR 305 n 229 TYR 305 A ARG 306 n 230 ARG 306 A LEU 307 n 231 LEU 307 A SER 308 n 232 SER 308 A LYS 309 n 233 LYS 309 A TYR 310 n 234 TYR 310 A ASN 311 n 235 ASN 311 A THR 312 n 236 THR 312 A GLU 313 n 237 GLU 313 A GLU 314 n 238 GLU 314 A PHE 315 n 239 PHE 315 A ILE 316 n 240 ILE 316 A THR 317 n 241 THR 317 A VAL 318 n 242 VAL 318 A TYR 319 n 243 TYR 319 A PRO 320 n 244 PRO 320 A THR 321 n 245 THR 321 A ASP 322 n 246 ASP 322 A PRO 323 n 247 PRO 323 A PRO 324 n 248 PRO 324 A ALA 325 n 249 LYS 325 A ASP 326 n 250 ASP 326 A TRP 327 n 251 TRP 327 A PRO 328 n 252 PRO 328 A VAL 329 n 253 VAL 329 A VAL 330 n 254 VAL 330 A THR 331 n 255 THR 331 A LEU 332 n 256 LEU 332 A ILE 333 n 257 ILE 333 A ALA 334 n 258 ALA 334 A GLU 335 n 259 GLU 335 A ASP 336 n 260 ASP 336 A ASP 337 n 261 ASP 337 A ALA 338 n 262 ARG 338 A HIS 339 n 263 HIS 339 A TYR 340 n 264 TYR 340 A ASN 341 n 265 ASN 341 A ILE 342 n 266 ILE 342 A PRO 343 n 267 PRO 343 A VAL 344 n 268 VAL 344 A ARG 345 n 269 ARG 345 A n 270 346 A n 271 347 A n 272 348 A n 273 349 A n 274 350 A n 275 351 A n 276 352 A author_and_software_defined_assembly PISA 1 monomeric A MSE 86 SELENOMETHIONINE A MSE 10 MET A MSE 89 SELENOMETHIONINE A MSE 13 MET A MSE 106 SELENOMETHIONINE A MSE 30 MET A MSE 108 SELENOMETHIONINE A MSE 32 MET A MSE 139 SELENOMETHIONINE A MSE 63 MET A MSE 155 SELENOMETHIONINE A MSE 79 MET A MSE 205 SELENOMETHIONINE A MSE 129 MET A MSE 236 SELENOMETHIONINE A MSE 160 MET A MSE 291 SELENOMETHIONINE A MSE 215 MET 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N MSE 86 A N MSE 10 A O ILE 120 A O ILE 44 A N SER 119 A N SER 43 A O VAL 344 A O VAL 268 A O ASN 341 A O ASN 265 A N ILE 333 A N ILE 257 A O ALA 334 A O ALA 258 A N TYR 305 A N TYR 229 A N ILE 302 A N ILE 226 A O TYR 319 A O TYR 243 1 A CG LYS 93 A CG LYS 17 1 Y 1 A CD LYS 93 A CD LYS 17 1 Y 1 A CE LYS 93 A CE LYS 17 1 Y 1 A NZ LYS 93 A NZ LYS 17 1 Y 1 A CG GLN 101 A CG GLN 25 1 Y 1 A CD GLN 101 A CD GLN 25 1 Y 1 A OE1 GLN 101 A OE1 GLN 25 1 Y 1 A NE2 GLN 101 A NE2 GLN 25 1 Y 1 A CG GLN 115 A CG GLN 39 1 Y 1 A CD GLN 115 A CD GLN 39 1 Y 1 A OE1 GLN 115 A OE1 GLN 39 1 Y 1 A NE2 GLN 115 A NE2 GLN 39 1 Y 1 A CG LYS 172 A CG LYS 96 1 Y 1 A CD LYS 172 A CD LYS 96 1 Y 1 A CE LYS 172 A CE LYS 96 1 Y 1 A NZ LYS 172 A NZ LYS 96 1 Y 1 A CG ARG 206 A CG ARG 130 1 Y 1 A CD ARG 206 A CD ARG 130 1 Y 1 A NE ARG 206 A NE ARG 130 1 Y 1 A CZ ARG 206 A CZ ARG 130 1 Y 1 A NH1 ARG 206 A NH1 ARG 130 1 Y 1 A NH2 ARG 206 A NH2 ARG 130 1 Y 1 A CG GLN 212 A CG GLN 136 1 Y 1 A CD GLN 212 A CD GLN 136 1 Y 1 A OE1 GLN 212 A OE1 GLN 136 1 Y 1 A NE2 GLN 212 A NE2 GLN 136 1 Y 1 A CG LYS 247 A CG LYS 171 1 Y 1 A CD LYS 247 A CD LYS 171 1 Y 1 A CE LYS 247 A CE LYS 171 1 Y 1 A NZ LYS 247 A NZ LYS 171 1 Y 1 A CG LYS 249 A CG LYS 173 1 Y 1 A CD LYS 249 A CD LYS 173 1 Y 1 A CE LYS 249 A CE LYS 173 1 Y 1 A NZ LYS 249 A NZ LYS 173 1 Y 1 A CG LYS 251 A CG LYS 175 1 Y 1 A CD LYS 251 A CD LYS 175 1 Y 1 A CE LYS 251 A CE LYS 175 1 Y 1 A NZ LYS 251 A NZ LYS 175 1 Y 1 A CG GLU 252 A CG GLU 176 1 Y 1 A CD GLU 252 A CD GLU 176 1 Y 1 A OE1 GLU 252 A OE1 GLU 176 1 Y 1 A OE2 GLU 252 A OE2 GLU 176 1 Y 1 A CG LYS 325 A CG LYS 249 1 Y 1 A CD LYS 325 A CD LYS 249 1 Y 1 A CE LYS 325 A CE LYS 249 1 Y 1 A NZ LYS 325 A NZ LYS 249 1 Y 1 A CG ARG 338 A CG ARG 262 1 Y 1 A CD ARG 338 A CD ARG 262 1 Y 1 A NE ARG 338 A NE ARG 262 1 Y 1 A CZ ARG 338 A CZ ARG 262 1 Y 1 A NH1 ARG 338 A NH1 ARG 262 1 Y 1 A NH2 ARG 338 A NH2 ARG 262 1 Y 1 A GLY 77 A GLY 1 1 Y 1 A GLY 174 A GLY 98 1 Y 1 A LEU 175 A LEU 99 1 Y 1 A LYS 176 A LYS 100 1 Y 1 A PHE 177 A PHE 101 1 Y 1 A ASP 178 A ASP 102 1 Y 1 A GLY 179 A GLY 103 1 Y 1 A LYS 180 A LYS 104 1 Y 1 A ASN 181 A ASN 105 1 Y 1 A GLU 182 A GLU 106 1 Y 1 A VAL 346 A VAL 270 1 Y 1 A CYS 347 A CYS 271 1 Y 1 A GLU 348 A GLU 272 1 Y 1 A GLU 349 A GLU 273 1 Y 1 A THR 350 A THR 274 1 Y 1 A SER 351 A SER 275 1 Y 1 A LEU 352 A LEU 276 1 Y 1 A A O O HOH HOH 511 638 2.01 1 A A O O HOH HOH 581 608 2.03 1 A A NE2 OH GLN TYR 288 319 2.06 1 A A O O SER HOH 163 511 2.09 1 A A SG S2 CYS BME 92 401 2.10 1 A A O O HOH HOH 511 564 2.13 1 A A O O HOH HOH 511 616 2.15 1 A A O O HOH HOH 685 716 2.18 1 A A O O HOH HOH 511 670 2.19 1 A A O O HOH HOH 600 692 2.19 1 A A CB SG CYS CYS 129 129 -0.146 0.016 1.812 1.666 B B N 1 A A CB SG CYS CYS 215 215 -0.097 0.016 1.812 1.715 N 1 A A CD1 CE1 TYR TYR 226 226 0.090 0.015 1.389 1.479 N 1 A PHE 219 -105.95 72.39 1 A SER 266 -142.23 42.15 1 A HIS 276 -125.40 -65.26 1 A HIS 282 -123.82 -58.16 1 A ASP 337 61.99 -1.41 25.236 -0.29 0.00 0.00 0.50 0.00 -0.21 0.965 0.949 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS 0.21547 0.18039 0.18215 1.60 39.376 1945 37444 36961 5.0 99.08 1.667 0.058 RANDOM 1 THROUGHOUT SAD 0.086 0.088 0.80 0.80 1.40 MAXIMUM LIKELIHOOD BABINET MODEL WITH MASK 1.60 39.376 222 2311 16 0 2073 0.030 0.022 2152 2.201 1.965 2922 5.572 5.000 263 31.680 24.000 100 13.301 15.000 366 15.116 15.000 14 0.160 0.200 324 0.013 0.021 1623 1.544 1.500 1304 2.575 2.000 2101 3.789 3.000 848 5.697 4.500 818 0.282 0.270 1.646 141 2670 20 98.46 1.6 39.376 4KSJ 74141 36961 2.0 2.0 0.061 1 36.6 3.8 99.9 0.584 1.6 1.66 3.1 1 3.7 100 0.416 1.66 1.72 4.5 1 3.7 100 data collection ADSC Quantum phasing SHARP refinement REFMAC 5.5.0109 data reduction HKL-2000 data scaling SCALEPACK Fam105b Crystal structure of the OTU domain of Gumby/Fam105B at 1.6 angstrom 1 N N 2 N N 3 N N 3 N N 4 N N A ILE 88 A ILE 12 HELX_P A TRP 96 A TRP 20 1 1 9 A THR 100 A THR 24 HELX_P A GLN 115 A GLN 39 1 2 16 A TYR 128 A TYR 52 HELX_P A GLN 141 A GLN 65 1 3 14 A PRO 146 A PRO 70 HELX_P A ASP 151 A ASP 75 1 4 6 A PRO 152 A PRO 76 HELX_P A TYR 165 A TYR 89 1 5 14 A ASN 166 A ASN 90 HELX_P A TRP 171 A TRP 95 5 6 6 A LEU 184 A LEU 108 HELX_P A GLU 204 A GLU 128 1 7 21 A THR 207 A THR 131 HELX_P A PHE 219 A PHE 143 1 8 13 A GLU 222 A GLU 146 HELX_P A LYS 249 A LYS 173 1 9 28 A PRO 254 A PRO 178 HELX_P A ARG 263 A ARG 187 1 10 10 A ASP 268 A ASP 192 HELX_P A HIS 276 A HIS 200 1 11 9 A LEU 277 A LEU 201 HELX_P A VAL 280 A VAL 204 5 12 4 A GLU 287 A GLU 211 HELX_P A ARG 299 A ARG 223 1 13 13 A SER 308 A SER 232 HELX_P A TYR 310 A TYR 234 5 14 3 A THR 312 A THR 236 HELX_P A GLU 314 A GLU 238 5 15 3 covale 1.314 A GLU 85 A C GLU 9 1_555 A MSE 86 A N MSE 10 1_555 covale 1.349 A MSE 86 A C MSE 10 1_555 A ASP 87 A N ASP 11 1_555 covale 1.344 A ILE 88 A C ILE 12 1_555 A MSE 89 A N MSE 13 1_555 covale 1.319 A MSE 89 A C MSE 13 1_555 A ASP 90 A N ASP 14 1_555 covale 1.358 A CYS 105 A C CYS 29 1_555 A MSE 106 A N MSE 30 1_555 covale 1.332 A MSE 106 A C MSE 30 1_555 A LYS 107 A N LYS 31 1_555 covale 1.330 A LYS 107 A C LYS 31 1_555 A MSE 108 A N MSE 32 1_555 covale 1.330 A MSE 108 A C MSE 32 1_555 A GLY 109 A N GLY 33 1_555 covale 1.343 A ALA 138 A C ALA 62 1_555 A MSE 139 A N MSE 63 1_555 covale 1.337 A MSE 139 A C MSE 63 1_555 A SER 140 A N SER 64 1_555 covale 1.324 A LEU 154 A C LEU 78 1_555 A MSE 155 A N MSE 79 1_555 covale 1.344 A MSE 155 A C MSE 79 1_555 A LEU 156 A N LEU 80 1_555 covale 1.334 A GLU 204 A C GLU 128 1_555 A MSE 205 A N MSE 129 1_555 covale 1.326 A MSE 205 A C MSE 129 1_555 A ARG 206 A N ARG 130 1_555 covale 1.332 A LEU 235 A C LEU 159 1_555 A MSE 236 A N MSE 160 1_555 covale 1.333 A MSE 236 A C MSE 160 1_555 A LEU 237 A N LEU 161 1_555 covale 1.347 A GLU 290 A C GLU 214 1_555 A MSE 291 A N MSE 215 1_555 covale 1.336 A MSE 291 A C MSE 215 1_555 A PHE 292 A N PHE 216 1_555 HYDROLASE OTU domain, deubiquitinase, ubiquitin, HYDROLASE A TYR 319 A TYR 243 1 A PRO 320 A PRO 244 -9.50 F105B_HUMAN UNP 1 79 Q96BN8 RLSVAPEMDIMDYCKKEWRGNTQKATCMKMGYEEVSQKFTSIRRVRGDNYCALRATLFQAMSQAVGLPPWLQDPELMLLP EKLISKYNWIKQWKLGLKFDGKNEDLVDKIKESLTLLRKKWAGLAEMRTAEARQIACDELFTNEAEEYSLYEAVKFLMLN RAIELYNDKEKGKEVPFFSVLLFARDTSNDPGQLLRNHLNQVGHTGGLEQVEMFLLAYAVRHTIQVYRLSKYNTEEFITV YPTDPPKDWPVVTLIAEDDRHYNIPVRVCEETSL 79 352 4KSJ 79 352 Q96BN8 A 1 3 276 1 EXPRESSION TAG GLY 77 4KSJ A Q96BN8 UNP 1 1 EXPRESSION TAG SER 78 4KSJ A Q96BN8 UNP 2 6 anti-parallel anti-parallel anti-parallel parallel anti-parallel A MSE 86 A MSE 10 A ASP 87 A ASP 11 A SER 119 A SER 43 A ARG 121 A ARG 45 A TYR 340 A TYR 264 A VAL 344 A VAL 268 A VAL 329 A VAL 253 A ALA 334 A ALA 258 A THR 301 A THR 225 A ARG 306 A ARG 230 A ILE 316 A ILE 240 A TYR 319 A TYR 243 BINDING SITE FOR RESIDUE BME A 401 Software 4 BINDING SITE FOR RESIDUE GOL A 402 Software 5 BINDING SITE FOR RESIDUE GOL A 403 Software 5 A CYS 92 A CYS 16 4 1_555 A LYS 93 A LYS 17 4 1_555 A LYS 107 A LYS 31 4 1_555 A GLU 111 A GLU 35 4 1_555 A TRP 167 A TRP 91 5 1_555 A ASP 268 A ASP 192 5 1_555 A GLY 270 A GLY 194 5 1_555 A GLN 271 A GLN 195 5 1_555 A ARG 274 A ARG 198 5 1_555 A HIS 276 A HIS 200 5 1_555 A GLY 284 A GLY 208 5 1_555 A GLY 285 A GLY 209 5 1_555 A GLU 287 A GLU 211 5 1_555 A GLU 290 A GLU 214 5 1_555 19 P 21 21 21