0.013717 0.000000 0.000000 0.000000 0.013717 0.000000 0.000000 0.000000 0.008774 0.00000 0.00000 0.00000 Barnard, T.J. Yu, X. Noinaj, N. Taraska, J.W. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 72.904 72.904 113.973 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C15 H17 N3 O5 319.313 n {2-[(1R,2R)-1-amino-2-hydroxypropyl]-4-(4-hydroxybenzylidene)-5-oxo-4,5-dihydro-1H-imidazol-1-yl}acetic acid PEPTIDE DERIVED CHROMOPHORE L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking To be Published 0353 Crystal Structure of Green Fluorescent Protein 10.2210/pdb4kw4/pdb pdb_00004kw4 100 1 mirrors CCD 2012-08-20 MARMOSAIC 225 mm CCD Si(111) SINGLE WAVELENGTH M x-ray 1 1.0000 1.0 22-BM APS 1.0000 SYNCHROTRON APS BEAMLINE 22-BM The protein in this structure is a version of GFP called Emerald GFP 27227.764 Green fluorescent protein S147H, S202H, Q204H, A206K 1 man polymer 18.015 water 303 nat water no yes GSMVSKGEELFTGVVPILVELDGDVNGHKFSVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTL(CRO)VQCFARYP DHMKQHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNYNHHKVYITAD KQKNGIKVNFKTRHNIEDGSVQLADHYQQNTPIGDGPVLLPDNHYLHTHSKLSKDPNEKRDHMVLLEFVTAAGITLGMDE LYK GSMVSKGEELFTGVVPILVELDGDVNGHKFSVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTLTYGVQCFARYPDH MKQHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNYNHHKVYITADKQ KNGIKVNFKTRHNIEDGSVQLADHYQQNTPIGDGPVLLPDNHYLHTHSKLSKDPNEKRDHMVLLEFVTAAGITLGMDELY K A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Jellyfish sample GFP 6100 Aequorea victoria 469008 Escherichia coli BL21(DE3) 1 2.78 55.77 hanging drop 8.2 50 mM HEPES pH 8.2, 50 mM MgCl2, 22% PEG4000, hanging drop, temperature 294K 294 database_2 struct_conn struct_ref_seq_dif repository Initial release Database references Derived calculations 1 0 2014-04-09 1 1 2022-12-21 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_conn.pdbx_leaving_atom_flag _struct_ref_seq_dif.details RCSB Y RCSB 2013-05-23 REL REL HOH water EMERALD GFP HAS LEU AT POSITION 64, THR AT 65, ALA AT 72, LYS AT 149, THR AT 153, 167, LEU AT 231. RESIDUES THR 65, TYR 66, GLY 67 FORM A CHROMOPHORE CRO 66 HOH 1 2 HOH HOH 301 A HOH 2 2 HOH HOH 302 A HOH 3 2 HOH HOH 303 A HOH 4 2 HOH HOH 304 A HOH 5 2 HOH HOH 305 A HOH 6 2 HOH HOH 306 A HOH 7 2 HOH HOH 307 A HOH 8 2 HOH HOH 308 A HOH 9 2 HOH HOH 309 A HOH 10 2 HOH HOH 310 A HOH 11 2 HOH HOH 311 A HOH 12 2 HOH HOH 312 A HOH 13 2 HOH HOH 313 A HOH 14 2 HOH HOH 314 A HOH 15 2 HOH HOH 315 A HOH 16 2 HOH HOH 316 A HOH 17 2 HOH HOH 317 A HOH 18 2 HOH HOH 318 A HOH 19 2 HOH HOH 319 A HOH 20 2 HOH HOH 320 A HOH 21 2 HOH HOH 321 A HOH 22 2 HOH HOH 322 A HOH 23 2 HOH HOH 323 A HOH 24 2 HOH HOH 324 A HOH 25 2 HOH HOH 325 A HOH 26 2 HOH HOH 326 A HOH 27 2 HOH HOH 327 A HOH 28 2 HOH HOH 328 A HOH 29 2 HOH HOH 329 A HOH 30 2 HOH HOH 330 A HOH 31 2 HOH HOH 331 A HOH 32 2 HOH HOH 332 A HOH 33 2 HOH HOH 333 A HOH 34 2 HOH HOH 334 A HOH 35 2 HOH HOH 335 A HOH 36 2 HOH HOH 336 A HOH 37 2 HOH HOH 337 A HOH 38 2 HOH HOH 338 A HOH 39 2 HOH HOH 339 A HOH 40 2 HOH HOH 340 A HOH 41 2 HOH HOH 341 A HOH 42 2 HOH HOH 342 A HOH 43 2 HOH HOH 343 A HOH 44 2 HOH HOH 344 A HOH 45 2 HOH HOH 345 A HOH 46 2 HOH HOH 346 A HOH 47 2 HOH HOH 347 A HOH 48 2 HOH HOH 348 A HOH 49 2 HOH HOH 349 A HOH 50 2 HOH HOH 350 A HOH 51 2 HOH HOH 351 A HOH 52 2 HOH HOH 352 A HOH 53 2 HOH HOH 353 A HOH 54 2 HOH HOH 354 A HOH 55 2 HOH HOH 355 A HOH 56 2 HOH HOH 356 A HOH 57 2 HOH HOH 357 A HOH 58 2 HOH HOH 358 A HOH 59 2 HOH HOH 359 A HOH 60 2 HOH HOH 360 A HOH 61 2 HOH HOH 361 A HOH 62 2 HOH HOH 362 A HOH 63 2 HOH HOH 363 A HOH 64 2 HOH HOH 364 A HOH 65 2 HOH HOH 365 A HOH 66 2 HOH HOH 366 A HOH 67 2 HOH HOH 367 A HOH 68 2 HOH HOH 368 A HOH 69 2 HOH HOH 369 A HOH 70 2 HOH HOH 370 A HOH 71 2 HOH HOH 371 A HOH 72 2 HOH HOH 372 A HOH 73 2 HOH HOH 373 A HOH 74 2 HOH HOH 374 A HOH 75 2 HOH HOH 375 A HOH 76 2 HOH HOH 376 A HOH 77 2 HOH HOH 377 A HOH 78 2 HOH HOH 378 A HOH 79 2 HOH HOH 379 A HOH 80 2 HOH HOH 380 A HOH 81 2 HOH HOH 381 A HOH 82 2 HOH HOH 382 A HOH 83 2 HOH HOH 383 A HOH 84 2 HOH HOH 384 A HOH 85 2 HOH HOH 385 A HOH 86 2 HOH HOH 386 A HOH 87 2 HOH HOH 387 A HOH 88 2 HOH HOH 388 A HOH 89 2 HOH HOH 389 A HOH 90 2 HOH HOH 390 A HOH 91 2 HOH HOH 391 A HOH 92 2 HOH HOH 392 A HOH 93 2 HOH HOH 393 A HOH 94 2 HOH HOH 394 A HOH 95 2 HOH HOH 395 A HOH 96 2 HOH HOH 396 A HOH 97 2 HOH HOH 397 A HOH 98 2 HOH HOH 398 A HOH 99 2 HOH HOH 399 A HOH 100 2 HOH HOH 400 A HOH 101 2 HOH HOH 401 A HOH 102 2 HOH HOH 402 A HOH 103 2 HOH HOH 403 A HOH 104 2 HOH HOH 404 A HOH 105 2 HOH HOH 405 A HOH 106 2 HOH HOH 406 A HOH 107 2 HOH HOH 407 A HOH 108 2 HOH HOH 408 A HOH 109 2 HOH HOH 409 A HOH 110 2 HOH HOH 410 A HOH 111 2 HOH HOH 411 A HOH 112 2 HOH HOH 412 A HOH 113 2 HOH HOH 413 A HOH 114 2 HOH HOH 414 A HOH 115 2 HOH HOH 415 A HOH 116 2 HOH HOH 416 A HOH 117 2 HOH HOH 417 A HOH 118 2 HOH HOH 418 A HOH 119 2 HOH HOH 419 A HOH 120 2 HOH HOH 420 A HOH 121 2 HOH HOH 421 A HOH 122 2 HOH HOH 422 A HOH 123 2 HOH HOH 423 A HOH 124 2 HOH HOH 424 A HOH 125 2 HOH HOH 425 A HOH 126 2 HOH HOH 426 A HOH 127 2 HOH HOH 427 A HOH 128 2 HOH HOH 428 A HOH 129 2 HOH HOH 429 A HOH 130 2 HOH HOH 430 A HOH 131 2 HOH HOH 431 A HOH 132 2 HOH HOH 432 A HOH 133 2 HOH HOH 433 A HOH 134 2 HOH HOH 434 A HOH 135 2 HOH HOH 435 A HOH 136 2 HOH HOH 436 A HOH 137 2 HOH HOH 437 A HOH 138 2 HOH HOH 438 A HOH 139 2 HOH HOH 439 A HOH 140 2 HOH HOH 440 A HOH 141 2 HOH HOH 441 A HOH 142 2 HOH HOH 442 A HOH 143 2 HOH HOH 443 A HOH 144 2 HOH HOH 444 A HOH 145 2 HOH HOH 445 A HOH 146 2 HOH HOH 446 A HOH 147 2 HOH HOH 447 A HOH 148 2 HOH HOH 448 A HOH 149 2 HOH HOH 449 A HOH 150 2 HOH HOH 450 A HOH 151 2 HOH HOH 451 A HOH 152 2 HOH HOH 452 A HOH 153 2 HOH HOH 453 A HOH 154 2 HOH HOH 454 A HOH 155 2 HOH HOH 455 A HOH 156 2 HOH HOH 456 A HOH 157 2 HOH HOH 457 A HOH 158 2 HOH HOH 458 A HOH 159 2 HOH HOH 459 A HOH 160 2 HOH HOH 460 A HOH 161 2 HOH HOH 461 A HOH 162 2 HOH HOH 462 A HOH 163 2 HOH HOH 463 A HOH 164 2 HOH HOH 464 A HOH 165 2 HOH HOH 465 A HOH 166 2 HOH HOH 466 A HOH 167 2 HOH HOH 467 A HOH 168 2 HOH HOH 468 A HOH 169 2 HOH HOH 469 A HOH 170 2 HOH HOH 470 A HOH 171 2 HOH HOH 471 A HOH 172 2 HOH HOH 472 A HOH 173 2 HOH HOH 473 A HOH 174 2 HOH HOH 474 A HOH 175 2 HOH HOH 475 A HOH 176 2 HOH HOH 476 A HOH 177 2 HOH HOH 477 A HOH 178 2 HOH HOH 478 A HOH 179 2 HOH HOH 479 A HOH 180 2 HOH HOH 480 A HOH 181 2 HOH HOH 481 A HOH 182 2 HOH HOH 482 A HOH 183 2 HOH HOH 483 A HOH 184 2 HOH HOH 484 A HOH 185 2 HOH HOH 485 A HOH 186 2 HOH HOH 486 A HOH 187 2 HOH HOH 487 A HOH 188 2 HOH HOH 488 A HOH 189 2 HOH HOH 489 A HOH 190 2 HOH HOH 490 A HOH 191 2 HOH HOH 491 A HOH 192 2 HOH HOH 492 A HOH 193 2 HOH HOH 493 A HOH 194 2 HOH HOH 494 A HOH 195 2 HOH HOH 495 A HOH 196 2 HOH HOH 496 A HOH 197 2 HOH HOH 497 A HOH 198 2 HOH HOH 498 A HOH 199 2 HOH HOH 499 A HOH 200 2 HOH HOH 500 A HOH 201 2 HOH HOH 501 A HOH 202 2 HOH HOH 502 A HOH 203 2 HOH HOH 503 A HOH 204 2 HOH HOH 504 A HOH 205 2 HOH HOH 505 A HOH 206 2 HOH HOH 506 A HOH 207 2 HOH HOH 507 A HOH 208 2 HOH HOH 508 A HOH 209 2 HOH HOH 509 A HOH 210 2 HOH HOH 510 A HOH 211 2 HOH HOH 511 A HOH 212 2 HOH HOH 512 A HOH 213 2 HOH HOH 513 A HOH 214 2 HOH HOH 514 A HOH 215 2 HOH HOH 515 A HOH 216 2 HOH HOH 516 A HOH 217 2 HOH HOH 517 A HOH 218 2 HOH HOH 518 A HOH 219 2 HOH HOH 519 A HOH 220 2 HOH HOH 520 A HOH 221 2 HOH HOH 521 A HOH 222 2 HOH HOH 522 A HOH 223 2 HOH HOH 523 A HOH 224 2 HOH HOH 524 A HOH 225 2 HOH HOH 525 A HOH 226 2 HOH HOH 526 A HOH 227 2 HOH HOH 527 A HOH 228 2 HOH HOH 528 A HOH 229 2 HOH HOH 529 A HOH 230 2 HOH HOH 530 A HOH 231 2 HOH HOH 531 A HOH 232 2 HOH HOH 532 A HOH 233 2 HOH HOH 533 A HOH 234 2 HOH HOH 534 A HOH 235 2 HOH HOH 535 A HOH 236 2 HOH HOH 536 A HOH 237 2 HOH HOH 537 A HOH 238 2 HOH HOH 538 A HOH 239 2 HOH HOH 539 A HOH 240 2 HOH HOH 540 A HOH 241 2 HOH HOH 541 A HOH 242 2 HOH HOH 542 A HOH 243 2 HOH HOH 543 A HOH 244 2 HOH HOH 544 A HOH 245 2 HOH HOH 545 A HOH 246 2 HOH HOH 546 A HOH 247 2 HOH HOH 547 A HOH 248 2 HOH HOH 548 A HOH 249 2 HOH HOH 549 A HOH 250 2 HOH HOH 550 A HOH 251 2 HOH HOH 551 A HOH 252 2 HOH HOH 552 A HOH 253 2 HOH HOH 553 A HOH 254 2 HOH HOH 554 A HOH 255 2 HOH HOH 555 A HOH 256 2 HOH HOH 556 A HOH 257 2 HOH HOH 557 A HOH 258 2 HOH HOH 558 A HOH 259 2 HOH HOH 559 A HOH 260 2 HOH HOH 560 A HOH 261 2 HOH HOH 561 A HOH 262 2 HOH HOH 562 A HOH 263 2 HOH HOH 563 A HOH 264 2 HOH HOH 564 A HOH 265 2 HOH HOH 565 A HOH 266 2 HOH HOH 566 A HOH 267 2 HOH HOH 567 A HOH 268 2 HOH HOH 568 A HOH 269 2 HOH HOH 569 A HOH 270 2 HOH HOH 570 A HOH 271 2 HOH HOH 571 A HOH 272 2 HOH HOH 572 A HOH 273 2 HOH HOH 573 A HOH 274 2 HOH HOH 574 A HOH 275 2 HOH HOH 575 A HOH 276 2 HOH HOH 576 A HOH 277 2 HOH HOH 577 A HOH 278 2 HOH HOH 578 A HOH 279 2 HOH HOH 579 A HOH 280 2 HOH HOH 580 A HOH 281 2 HOH HOH 581 A HOH 282 2 HOH HOH 582 A HOH 283 2 HOH HOH 583 A HOH 284 2 HOH HOH 584 A HOH 285 2 HOH HOH 585 A HOH 286 2 HOH HOH 586 A HOH 287 2 HOH HOH 587 A HOH 288 2 HOH HOH 588 A HOH 289 2 HOH HOH 589 A HOH 290 2 HOH HOH 590 A HOH 291 2 HOH HOH 591 A HOH 292 2 HOH HOH 592 A HOH 293 2 HOH HOH 593 A HOH 294 2 HOH HOH 594 A HOH 295 2 HOH HOH 595 A HOH 296 2 HOH HOH 596 A HOH 297 2 HOH HOH 597 A HOH 298 2 HOH HOH 598 A HOH 299 2 HOH HOH 599 A HOH 300 2 HOH HOH 600 A HOH 301 2 HOH HOH 601 A HOH 302 2 HOH HOH 602 A HOH 303 2 HOH HOH 603 A 6.230 6.230 46.970 46.970 n 1 -2 A n 2 -1 A n 3 0 A n 4 1 A SER 2 n 5 SER 2 A LYS 3 n 6 LYS 3 A GLY 4 n 7 GLY 4 A GLU 5 n 8 GLU 5 A GLU 6 n 9 GLU 6 A LEU 7 n 10 LEU 7 A PHE 8 n 11 PHE 8 A THR 9 n 12 THR 9 A GLY 10 n 13 GLY 10 A VAL 11 n 14 VAL 11 A VAL 12 n 15 VAL 12 A PRO 13 n 16 PRO 13 A ILE 14 n 17 ILE 14 A LEU 15 n 18 LEU 15 A VAL 16 n 19 VAL 16 A GLU 17 n 20 GLU 17 A LEU 18 n 21 LEU 18 A ASP 19 n 22 ASP 19 A GLY 20 n 23 GLY 20 A ASP 21 n 24 ASP 21 A VAL 22 n 25 VAL 22 A ASN 23 n 26 ASN 23 A GLY 24 n 27 GLY 24 A HIS 25 n 28 HIS 25 A LYS 26 n 29 LYS 26 A PHE 27 n 30 PHE 27 A SER 28 n 31 SER 28 A VAL 29 n 32 VAL 29 A SER 30 n 33 SER 30 A GLY 31 n 34 GLY 31 A GLU 32 n 35 GLU 32 A GLY 33 n 36 GLY 33 A GLU 34 n 37 GLU 34 A GLY 35 n 38 GLY 35 A ASP 36 n 39 ASP 36 A ALA 37 n 40 ALA 37 A THR 38 n 41 THR 38 A TYR 39 n 42 TYR 39 A GLY 40 n 43 GLY 40 A LYS 41 n 44 LYS 41 A LEU 42 n 45 LEU 42 A THR 43 n 46 THR 43 A LEU 44 n 47 LEU 44 A LYS 45 n 48 LYS 45 A PHE 46 n 49 PHE 46 A ILE 47 n 50 ILE 47 A CYS 48 n 51 CYS 48 A THR 49 n 52 THR 49 A THR 50 n 53 THR 50 A GLY 51 n 54 GLY 51 A LYS 52 n 55 LYS 52 A LEU 53 n 56 LEU 53 A PRO 54 n 57 PRO 54 A VAL 55 n 58 VAL 55 A PRO 56 n 59 PRO 56 A TRP 57 n 60 TRP 57 A PRO 58 n 61 PRO 58 A THR 59 n 62 THR 59 A LEU 60 n 63 LEU 60 A VAL 61 n 64 VAL 61 A THR 62 n 65 THR 62 A THR 63 n 66 THR 63 A LEU 64 n 67 LEU 64 A CRO 66 n 68 CRO 66 A VAL 68 n 69 VAL 68 A GLN 69 n 70 GLN 69 A CYS 70 n 71 CYS 70 A PHE 71 n 72 PHE 71 A ALA 72 n 73 ALA 72 A ARG 73 n 74 ARG 73 A TYR 74 n 75 TYR 74 A PRO 75 n 76 PRO 75 A ASP 76 n 77 ASP 76 A HIS 77 n 78 HIS 77 A MET 78 n 79 MET 78 A LYS 79 n 80 LYS 79 A GLN 80 n 81 GLN 80 A HIS 81 n 82 HIS 81 A ASP 82 n 83 ASP 82 A PHE 83 n 84 PHE 83 A PHE 84 n 85 PHE 84 A LYS 85 n 86 LYS 85 A SER 86 n 87 SER 86 A ALA 87 n 88 ALA 87 A MET 88 n 89 MET 88 A PRO 89 n 90 PRO 89 A GLU 90 n 91 GLU 90 A GLY 91 n 92 GLY 91 A TYR 92 n 93 TYR 92 A VAL 93 n 94 VAL 93 A GLN 94 n 95 GLN 94 A GLU 95 n 96 GLU 95 A ARG 96 n 97 ARG 96 A THR 97 n 98 THR 97 A ILE 98 n 99 ILE 98 A PHE 99 n 100 PHE 99 A PHE 100 n 101 PHE 100 A LYS 101 n 102 LYS 101 A ASP 102 n 103 ASP 102 A ASP 103 n 104 ASP 103 A GLY 104 n 105 GLY 104 A ASN 105 n 106 ASN 105 A TYR 106 n 107 TYR 106 A LYS 107 n 108 LYS 107 A THR 108 n 109 THR 108 A ARG 109 n 110 ARG 109 A ALA 110 n 111 ALA 110 A GLU 111 n 112 GLU 111 A VAL 112 n 113 VAL 112 A LYS 113 n 114 LYS 113 A PHE 114 n 115 PHE 114 A GLU 115 n 116 GLU 115 A GLY 116 n 117 GLY 116 A ASP 117 n 118 ASP 117 A THR 118 n 119 THR 118 A LEU 119 n 120 LEU 119 A VAL 120 n 121 VAL 120 A ASN 121 n 122 ASN 121 A ARG 122 n 123 ARG 122 A ILE 123 n 124 ILE 123 A GLU 124 n 125 GLU 124 A LEU 125 n 126 LEU 125 A LYS 126 n 127 LYS 126 A GLY 127 n 128 GLY 127 A ILE 128 n 129 ILE 128 A ASP 129 n 130 ASP 129 A PHE 130 n 131 PHE 130 A LYS 131 n 132 LYS 131 A GLU 132 n 133 GLU 132 A ASP 133 n 134 ASP 133 A GLY 134 n 135 GLY 134 A ASN 135 n 136 ASN 135 A ILE 136 n 137 ILE 136 A LEU 137 n 138 LEU 137 A GLY 138 n 139 GLY 138 A HIS 139 n 140 HIS 139 A LYS 140 n 141 LYS 140 A LEU 141 n 142 LEU 141 A GLU 142 n 143 GLU 142 A TYR 143 n 144 TYR 143 A ASN 144 n 145 ASN 144 A TYR 145 n 146 TYR 145 A ASN 146 n 147 ASN 146 A HIS 147 n 148 HIS 147 A HIS 148 n 149 HIS 148 A LYS 149 n 150 LYS 149 A VAL 150 n 151 VAL 150 A TYR 151 n 152 TYR 151 A ILE 152 n 153 ILE 152 A THR 153 n 154 THR 153 A ALA 154 n 155 ALA 154 A ASP 155 n 156 ASP 155 A LYS 156 n 157 LYS 156 A GLN 157 n 158 GLN 157 A LYS 158 n 159 LYS 158 A ASN 159 n 160 ASN 159 A GLY 160 n 161 GLY 160 A ILE 161 n 162 ILE 161 A LYS 162 n 163 LYS 162 A VAL 163 n 164 VAL 163 A ASN 164 n 165 ASN 164 A PHE 165 n 166 PHE 165 A LYS 166 n 167 LYS 166 A THR 167 n 168 THR 167 A ARG 168 n 169 ARG 168 A HIS 169 n 170 HIS 169 A ASN 170 n 171 ASN 170 A ILE 171 n 172 ILE 171 A GLU 172 n 173 GLU 172 A ASP 173 n 174 ASP 173 A GLY 174 n 175 GLY 174 A SER 175 n 176 SER 175 A VAL 176 n 177 VAL 176 A GLN 177 n 178 GLN 177 A LEU 178 n 179 LEU 178 A ALA 179 n 180 ALA 179 A ASP 180 n 181 ASP 180 A HIS 181 n 182 HIS 181 A TYR 182 n 183 TYR 182 A GLN 183 n 184 GLN 183 A GLN 184 n 185 GLN 184 A ASN 185 n 186 ASN 185 A THR 186 n 187 THR 186 A PRO 187 n 188 PRO 187 A ILE 188 n 189 ILE 188 A GLY 189 n 190 GLY 189 A ASP 190 n 191 ASP 190 A GLY 191 n 192 GLY 191 A PRO 192 n 193 PRO 192 A VAL 193 n 194 VAL 193 A LEU 194 n 195 LEU 194 A LEU 195 n 196 LEU 195 A PRO 196 n 197 PRO 196 A ASP 197 n 198 ASP 197 A ASN 198 n 199 ASN 198 A HIS 199 n 200 HIS 199 A TYR 200 n 201 TYR 200 A LEU 201 n 202 LEU 201 A HIS 202 n 203 HIS 202 A THR 203 n 204 THR 203 A HIS 204 n 205 HIS 204 A SER 205 n 206 SER 205 A LYS 206 n 207 LYS 206 A LEU 207 n 208 LEU 207 A SER 208 n 209 SER 208 A LYS 209 n 210 LYS 209 A ASP 210 n 211 ASP 210 A PRO 211 n 212 PRO 211 A ASN 212 n 213 ASN 212 A GLU 213 n 214 GLU 213 A LYS 214 n 215 LYS 214 A ARG 215 n 216 ARG 215 A ASP 216 n 217 ASP 216 A HIS 217 n 218 HIS 217 A MET 218 n 219 MET 218 A VAL 219 n 220 VAL 219 A LEU 220 n 221 LEU 220 A LEU 221 n 222 LEU 221 A GLU 222 n 223 GLU 222 A PHE 223 n 224 PHE 223 A VAL 224 n 225 VAL 224 A THR 225 n 226 THR 225 A ALA 226 n 227 ALA 226 A ALA 227 n 228 ALA 227 A GLY 228 n 229 GLY 228 A ILE 229 n 230 ILE 229 A THR 230 n 231 THR 230 A LEU 231 n 232 LEU 231 A n 233 232 A n 234 233 A n 235 234 A n 236 235 A n 237 236 A n 238 237 A n 239 238 A 6.9422 1.4834 -0.6529 0.9654 -0.0309 1.2153 0.1399 -0.0676 -0.0329 0.0429 0.0313 -0.0186 -0.1517 0.1419 -0.1594 0.1659 -0.0588 0.0471 0.2248 -0.0606 0.1561 refined 5.8131 34.8751 10.6333 X-RAY DIFFRACTION 2.0235 1.3662 0.0986 2.5201 0.5919 1.5618 0.0724 0.0104 0.2630 -0.0952 0.0666 0.0649 -0.5582 0.2005 -0.0565 0.2276 -0.0837 0.0497 0.1802 -0.0546 0.1739 refined 9.8511 41.3592 5.1179 X-RAY DIFFRACTION 1.6696 1.5808 0.5822 5.6767 2.1659 2.5332 0.0439 -0.1210 -0.1196 0.0898 -0.0393 0.4711 0.2803 -0.5372 0.0129 0.1193 -0.0459 -0.0254 0.1521 0.0217 0.1664 refined -1.3023 21.3211 1.2920 X-RAY DIFFRACTION 1.1908 0.6221 0.4139 1.0013 0.0700 0.6352 0.1092 -0.1426 0.0047 0.1590 0.1229 -0.1214 0.1274 0.4535 -0.1501 0.1210 -0.0333 -0.0008 0.2715 -0.0825 0.1466 refined 12.5488 30.8642 10.1624 X-RAY DIFFRACTION 0.4808 0.0409 0.4292 0.3889 0.0646 0.3938 0.0938 0.2377 0.1269 -0.0993 0.1807 -0.3286 -0.5701 0.7063 0.3214 0.3275 -0.3814 0.1150 0.5590 -0.0850 0.2898 refined 21.6845 42.0788 -4.9024 X-RAY DIFFRACTION 1.8710 2.0227 -1.3353 6.2596 -2.7467 3.0751 0.0025 0.0609 -0.2071 0.1030 0.0194 -0.4026 0.1013 0.3749 0.0149 0.1403 0.0328 -0.0524 0.1898 -0.0755 0.1738 refined 13.5753 23.0041 0.0983 X-RAY DIFFRACTION 1.8902 -0.2206 -0.6204 0.7366 0.8338 1.0021 0.1094 0.1781 -0.1195 -0.0944 0.0897 -0.3348 -0.1789 0.7668 -0.0762 0.1772 -0.0510 0.0049 0.3548 -0.1128 0.1539 refined 18.4979 30.8766 -1.8321 X-RAY DIFFRACTION 1.2240 0.1500 0.3857 1.2152 0.6047 1.8489 0.2021 -0.1131 0.0922 0.2790 -0.2053 0.1237 -0.1936 -0.0112 -0.0317 0.1989 -0.0554 0.0165 0.1305 -0.0149 0.1266 refined 5.1885 32.1855 1.0626 X-RAY DIFFRACTION A 0 A 0 X-RAY DIFFRACTION 1 chain 'A' and (resid 2 through 24 ) A 0 A 0 X-RAY DIFFRACTION 2 chain 'A' and (resid 25 through 68 ) A 0 A 0 X-RAY DIFFRACTION 3 chain 'A' and (resid 69 through 81 ) A 0 A 0 X-RAY DIFFRACTION 4 chain 'A' and (resid 82 through 128 ) A 0 A 0 X-RAY DIFFRACTION 5 chain 'A' and (resid 129 through 147 ) A 0 A 0 X-RAY DIFFRACTION 6 chain 'A' and (resid 148 through 170 ) A 0 A 0 X-RAY DIFFRACTION 7 chain 'A' and (resid 171 through 187 ) A 0 A 0 X-RAY DIFFRACTION 8 chain 'A' and (resid 188 through 231 ) author_and_software_defined_assembly PISA 1 monomeric A CRO 66 A CRO 68 GLY A CRO 66 A CRO 68 TYR A CRO 66 A CRO 68 GLY 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N VAL 16 A N VAL 19 A O GLY 31 A O GLY 34 A N ASP 36 A N ASP 39 A O LYS 41 A O LYS 44 A N LEU 44 A N LEU 47 A O LEU 220 A O LEU 221 A O THR 225 A O THR 226 A N HIS 202 A N HIS 203 A O HIS 199 A O HIS 200 A N ILE 152 A N ILE 153 A N ASP 155 A N ASP 156 A O GLY 160 A O GLY 161 A N PHE 165 A N PHE 166 A O HIS 181 A O HIS 182 A O GLN 184 A O GLN 185 A N GLU 95 A N GLU 96 A N ILE 98 A N ILE 99 A O TYR 106 A O TYR 107 A N LYS 113 A N LYS 114 A O VAL 120 A O VAL 121 A O GLY 127 A O GLY 128 A N ASP 21 A N ASP 24 1 A CD LYS 3 A CD LYS 6 1 Y 1 A CE LYS 3 A CE LYS 6 1 Y 1 A NZ LYS 3 A NZ LYS 6 1 Y 1 A CD GLU 5 A CD GLU 8 1 Y 1 A OE1 GLU 5 A OE1 GLU 8 1 Y 1 A OE2 GLU 5 A OE2 GLU 8 1 Y 1 A CD GLU 6 A CD GLU 9 1 Y 1 A OE1 GLU 6 A OE1 GLU 9 1 Y 1 A OE2 GLU 6 A OE2 GLU 9 1 Y 1 A CE LYS 52 A CE LYS 55 1 Y 1 A NZ LYS 52 A NZ LYS 55 1 Y 1 A CE LYS 107 A CE LYS 108 1 Y 1 A NZ LYS 107 A NZ LYS 108 1 Y 1 A CE LYS 113 A CE LYS 114 1 Y 1 A NZ LYS 113 A NZ LYS 114 1 Y 1 A NZ LYS 131 A NZ LYS 132 1 Y 1 A CG GLU 132 A CG GLU 133 1 Y 1 A CD GLU 132 A CD GLU 133 1 Y 1 A OE1 GLU 132 A OE1 GLU 133 1 Y 1 A OE2 GLU 132 A OE2 GLU 133 1 Y 1 A NZ LYS 158 A NZ LYS 159 1 Y 1 A NZ LYS 162 A NZ LYS 163 1 Y 1 A CD LYS 166 A CD LYS 167 1 Y 1 A CE LYS 166 A CE LYS 167 1 Y 1 A NZ LYS 166 A NZ LYS 167 1 Y 1 A CG GLU 172 A CG GLU 173 1 Y 1 A CD GLU 172 A CD GLU 173 1 Y 1 A OE1 GLU 172 A OE1 GLU 173 1 Y 1 A OE2 GLU 172 A OE2 GLU 173 1 Y 1 A CG LEU 178 A CG LEU 179 1 Y 1 A CD1 LEU 178 A CD1 LEU 179 1 Y 1 A CD2 LEU 178 A CD2 LEU 179 1 Y 1 A CD GLN 184 A CD GLN 185 1 Y 1 A OE1 GLN 184 A OE1 GLN 185 1 Y 1 A NE2 GLN 184 A NE2 GLN 185 1 Y 1 A CE LYS 206 A CE LYS 207 1 Y 1 A NZ LYS 206 A NZ LYS 207 1 Y 1 A CD LYS 214 A CD LYS 215 1 Y 1 A CE LYS 214 A CE LYS 215 1 Y 1 A NZ LYS 214 A NZ LYS 215 1 Y 1 A GLY -2 A GLY 1 1 Y 1 A SER -1 A SER 2 1 Y 1 A MET 0 A MET 3 1 Y 1 A VAL 1 A VAL 4 1 Y 1 A GLY 232 A GLY 233 1 Y 1 A MET 233 A MET 234 1 Y 1 A ASP 234 A ASP 235 1 Y 1 A GLU 235 A GLU 236 1 Y 1 A LEU 236 A LEU 237 1 Y 1 A TYR 237 A TYR 238 1 Y 1 A LYS 238 A LYS 239 1 Y 1 A A HD1 O HIS HOH 204 373 1.46 1 A A O O HOH HOH 459 539 2.19 1 A A O O HOH HOH 386 416 2.19 1 A A OE1 HE2 GLU HIS 115 204 1.54 1_555 3_555 70.010 25.9969 9.110 0.2045 0.1701 0.217 0.1723 1.7460 23.0540 2000 31878 31868 6.2800 99.8800 1.000 0.180 0.8700 0.1900 Random 1 1.380 MOLECULAR REPLACEMENT 19.6800 0.9000 1.1100 ML FLAT BULK SOLVENT MODEL 1.7460 23.0540 303 2098 0 0 1795 0.011 1928 1.399 2631 0.081 284 0.006 348 14.575 707 0.3455 0.3050 1.7896 138 2070 2208 14 100.0000 0.3011 0.2680 1.8380 141 2087 2228 14 100.0000 0.2530 0.2489 1.8920 140 2097 2237 14 100.0000 0.2224 0.2226 1.9531 140 2088 2228 14 100.0000 0.2131 0.1938 2.0228 141 2120 2261 14 100.0000 0.2297 0.1793 2.1038 141 2100 2241 14 100.0000 0.2313 0.1639 2.1995 141 2104 2245 14 100.0000 0.2273 0.1675 2.3153 141 2110 2251 14 100.0000 0.2033 0.1630 2.4602 143 2134 2277 14 100.0000 0.2243 0.1570 2.6499 144 2138 2282 14 100.0000 0.1971 0.1701 2.9161 144 2150 2294 14 100.0000 0.1811 0.1502 3.3370 144 2155 2299 14 100.0000 0.1788 0.1431 4.2001 146 2191 2337 14 100.0000 0.1778 0.1575 23.0563 156 2324 2480 14 100.0000 29.0 1.746 50.000 4KW4 31994 31923 1 1 0.088 1.312 1 8.700 8.300 99.800 0.822 1.746 1.810 3125 1.049 1 7.200 100.000 0.667 1.810 1.890 3114 1.056 1 7.400 99.700 0.499 1.890 1.970 3132 1.115 1 7.700 99.700 0.368 1.970 2.070 3142 1.145 1 8.100 99.800 0.268 2.070 2.200 3155 1.190 1 8.300 99.900 0.198 2.200 2.380 3176 1.215 1 8.400 99.900 0.142 2.380 2.610 3183 1.371 1 8.600 99.900 0.107 2.610 2.990 3200 1.730 1 8.800 99.900 0.055 2.990 3.770 3259 1.759 1 9.100 99.900 0.031 3.770 50.000 3437 1.287 1 8.800 99.200 data reduction Zbyszek Otwinowski hkl@hkl-xray.com http://www.hkl-xray.com/ DENZO program data scaling Zbyszek Otwinowski hkl@hkl-xray.com http://www.hkl-xray.com/ SCALEPACK program phasing Randy J. Read cimr-phaser@lists.cam.ac.uk Sat Jun 2 05:21:23 2012 (svn ) http://www-structmed.cimr.cam.ac.uk/phaser/ PHASER program 2.5.0 refinement Paul D. Adams PDAdams@lbl.gov C++ http://www.phenix-online.org/ PHENIX package 1.8.2_1309 data extraction PDB deposit@deposit.rcsb.org April 22, 2011 C++ http://sw-tools.pdb.org/apps/PDB_EXTRACT/ PDB_EXTRACT package 3.11 data collection SERGUI Crystal Structure of Green Fluorescent Protein 1 N N 2 N N A LYS 3 A LYS 6 HELX_P A THR 9 A THR 12 5 1 7 A PRO 56 A PRO 59 HELX_P A VAL 61 A VAL 64 5 2 6 A VAL 68 A VAL 69 HELX_P A ALA 72 A ALA 73 5 3 5 A PRO 75 A PRO 76 HELX_P A HIS 81 A HIS 82 5 4 7 A ASP 82 A ASP 83 HELX_P A ALA 87 A ALA 88 1 5 6 A LYS 156 A LYS 157 HELX_P A ASN 159 A ASN 160 5 6 4 covale 1.331 both A LEU 64 A C LEU 67 1_555 A CRO 66 A N1 CRO 68 1_555 covale 1.352 both A CRO 66 A C3 CRO 68 1_555 A VAL 68 A N VAL 69 1_555 FLUORESCENT PROTEIN beta barrel, fluorescent protein, chromophore A MET 88 A MET 89 1 A PRO 89 A PRO 90 6.13 GFP_AEQVI UNP 1 2 P42212 SKGEELFTGVVPILVELDGDVNGHKFSVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTFSYGVQCFSRYPDHMKQH DFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNYNSHNVYIMADKQKNGI KVNFKIRHNIEDGSVQLADHYQQNTPIGDGPVLLPDNHYLSTQSALSKDPNEKRDHMVLLEFVTAAGITHGMDELYK 2 238 4KW4 2 238 P42212 A 1 5 239 1 expression tag GLY -2 4KW4 A P42212 UNP 1 1 expression tag SER -1 4KW4 A P42212 UNP 2 1 expression tag MET 0 4KW4 A P42212 UNP 3 1 expression tag VAL 1 4KW4 A P42212 UNP 4 1 PHE SEE REMARK 999 LEU 64 4KW4 A P42212 UNP 64 67 1 SER chromophore CRO 66 4KW4 A P42212 UNP 65 68 1 TYR chromophore CRO 66 4KW4 A P42212 UNP 66 68 1 GLY chromophore CRO 66 4KW4 A P42212 UNP 67 68 1 SER SEE REMARK 999 ALA 72 4KW4 A P42212 UNP 72 73 1 SER engineered mutation HIS 147 4KW4 A P42212 UNP 147 148 1 ASN SEE REMARK 999 LYS 149 4KW4 A P42212 UNP 149 150 1 MET SEE REMARK 999 THR 153 4KW4 A P42212 UNP 153 154 1 ILE SEE REMARK 999 THR 167 4KW4 A P42212 UNP 167 168 1 SER engineered mutation HIS 202 4KW4 A P42212 UNP 202 203 1 GLN engineered mutation HIS 204 4KW4 A P42212 UNP 204 205 1 ALA engineered mutation LYS 206 4KW4 A P42212 UNP 206 207 1 HIS SEE REMARK 999 LEU 231 4KW4 A P42212 UNP 231 232 12 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel A VAL 11 A VAL 14 A VAL 22 A VAL 25 A HIS 25 A HIS 28 A ASP 36 A ASP 39 A LYS 41 A LYS 44 A CYS 48 A CYS 51 A HIS 217 A HIS 218 A ALA 227 A ALA 228 A HIS 199 A HIS 200 A SER 208 A SER 209 A HIS 147 A HIS 148 A ASP 155 A ASP 156 A GLY 160 A GLY 161 A ASN 170 A ASN 171 A VAL 176 A VAL 177 A PRO 187 A PRO 188 A TYR 92 A TYR 93 A PHE 100 A PHE 101 A ASN 105 A ASN 106 A GLU 115 A GLU 116 A THR 118 A THR 119 A ILE 128 A ILE 129 A VAL 11 A VAL 14 A VAL 22 A VAL 25 92 P 41 21 2