0.013717
0.000000
0.000000
0.000000
0.013717
0.000000
0.000000
0.000000
0.008774
0.00000
0.00000
0.00000
Barnard, T.J.
Yu, X.
Noinaj, N.
Taraska, J.W.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
72.904
72.904
113.973
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C15 H17 N3 O5
319.313
n
{2-[(1R,2R)-1-amino-2-hydroxypropyl]-4-(4-hydroxybenzylidene)-5-oxo-4,5-dihydro-1H-imidazol-1-yl}acetic acid
PEPTIDE DERIVED CHROMOPHORE
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
To be Published
0353
Crystal Structure of Green Fluorescent Protein
10.2210/pdb4kw4/pdb
pdb_00004kw4
100
1
mirrors
CCD
2012-08-20
MARMOSAIC 225 mm CCD
Si(111)
SINGLE WAVELENGTH
M
x-ray
1
1.0000
1.0
22-BM
APS
1.0000
SYNCHROTRON
APS BEAMLINE 22-BM
The protein in this structure is a version of GFP called Emerald GFP
27227.764
Green fluorescent protein
S147H, S202H, Q204H, A206K
1
man
polymer
18.015
water
303
nat
water
no
yes
GSMVSKGEELFTGVVPILVELDGDVNGHKFSVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTL(CRO)VQCFARYP
DHMKQHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNYNHHKVYITAD
KQKNGIKVNFKTRHNIEDGSVQLADHYQQNTPIGDGPVLLPDNHYLHTHSKLSKDPNEKRDHMVLLEFVTAAGITLGMDE
LYK
GSMVSKGEELFTGVVPILVELDGDVNGHKFSVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTLTYGVQCFARYPDH
MKQHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNYNHHKVYITADKQ
KNGIKVNFKTRHNIEDGSVQLADHYQQNTPIGDGPVLLPDNHYLHTHSKLSKDPNEKRDHMVLLEFVTAAGITLGMDELY
K
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Jellyfish
sample
GFP
6100
Aequorea victoria
469008
Escherichia coli
BL21(DE3)
1
2.78
55.77
hanging drop
8.2
50 mM HEPES pH 8.2, 50 mM MgCl2, 22% PEG4000, hanging drop, temperature 294K
294
database_2
struct_conn
struct_ref_seq_dif
repository
Initial release
Database references
Derived calculations
1
0
2014-04-09
1
1
2022-12-21
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.pdbx_leaving_atom_flag
_struct_ref_seq_dif.details
RCSB
Y
RCSB
2013-05-23
REL
REL
HOH
water
EMERALD GFP HAS LEU AT POSITION 64, THR AT 65, ALA AT 72, LYS AT 149, THR AT 153, 167, LEU AT 231. RESIDUES THR 65, TYR 66, GLY 67 FORM A CHROMOPHORE CRO 66
HOH
1
2
HOH
HOH
301
A
HOH
2
2
HOH
HOH
302
A
HOH
3
2
HOH
HOH
303
A
HOH
4
2
HOH
HOH
304
A
HOH
5
2
HOH
HOH
305
A
HOH
6
2
HOH
HOH
306
A
HOH
7
2
HOH
HOH
307
A
HOH
8
2
HOH
HOH
308
A
HOH
9
2
HOH
HOH
309
A
HOH
10
2
HOH
HOH
310
A
HOH
11
2
HOH
HOH
311
A
HOH
12
2
HOH
HOH
312
A
HOH
13
2
HOH
HOH
313
A
HOH
14
2
HOH
HOH
314
A
HOH
15
2
HOH
HOH
315
A
HOH
16
2
HOH
HOH
316
A
HOH
17
2
HOH
HOH
317
A
HOH
18
2
HOH
HOH
318
A
HOH
19
2
HOH
HOH
319
A
HOH
20
2
HOH
HOH
320
A
HOH
21
2
HOH
HOH
321
A
HOH
22
2
HOH
HOH
322
A
HOH
23
2
HOH
HOH
323
A
HOH
24
2
HOH
HOH
324
A
HOH
25
2
HOH
HOH
325
A
HOH
26
2
HOH
HOH
326
A
HOH
27
2
HOH
HOH
327
A
HOH
28
2
HOH
HOH
328
A
HOH
29
2
HOH
HOH
329
A
HOH
30
2
HOH
HOH
330
A
HOH
31
2
HOH
HOH
331
A
HOH
32
2
HOH
HOH
332
A
HOH
33
2
HOH
HOH
333
A
HOH
34
2
HOH
HOH
334
A
HOH
35
2
HOH
HOH
335
A
HOH
36
2
HOH
HOH
336
A
HOH
37
2
HOH
HOH
337
A
HOH
38
2
HOH
HOH
338
A
HOH
39
2
HOH
HOH
339
A
HOH
40
2
HOH
HOH
340
A
HOH
41
2
HOH
HOH
341
A
HOH
42
2
HOH
HOH
342
A
HOH
43
2
HOH
HOH
343
A
HOH
44
2
HOH
HOH
344
A
HOH
45
2
HOH
HOH
345
A
HOH
46
2
HOH
HOH
346
A
HOH
47
2
HOH
HOH
347
A
HOH
48
2
HOH
HOH
348
A
HOH
49
2
HOH
HOH
349
A
HOH
50
2
HOH
HOH
350
A
HOH
51
2
HOH
HOH
351
A
HOH
52
2
HOH
HOH
352
A
HOH
53
2
HOH
HOH
353
A
HOH
54
2
HOH
HOH
354
A
HOH
55
2
HOH
HOH
355
A
HOH
56
2
HOH
HOH
356
A
HOH
57
2
HOH
HOH
357
A
HOH
58
2
HOH
HOH
358
A
HOH
59
2
HOH
HOH
359
A
HOH
60
2
HOH
HOH
360
A
HOH
61
2
HOH
HOH
361
A
HOH
62
2
HOH
HOH
362
A
HOH
63
2
HOH
HOH
363
A
HOH
64
2
HOH
HOH
364
A
HOH
65
2
HOH
HOH
365
A
HOH
66
2
HOH
HOH
366
A
HOH
67
2
HOH
HOH
367
A
HOH
68
2
HOH
HOH
368
A
HOH
69
2
HOH
HOH
369
A
HOH
70
2
HOH
HOH
370
A
HOH
71
2
HOH
HOH
371
A
HOH
72
2
HOH
HOH
372
A
HOH
73
2
HOH
HOH
373
A
HOH
74
2
HOH
HOH
374
A
HOH
75
2
HOH
HOH
375
A
HOH
76
2
HOH
HOH
376
A
HOH
77
2
HOH
HOH
377
A
HOH
78
2
HOH
HOH
378
A
HOH
79
2
HOH
HOH
379
A
HOH
80
2
HOH
HOH
380
A
HOH
81
2
HOH
HOH
381
A
HOH
82
2
HOH
HOH
382
A
HOH
83
2
HOH
HOH
383
A
HOH
84
2
HOH
HOH
384
A
HOH
85
2
HOH
HOH
385
A
HOH
86
2
HOH
HOH
386
A
HOH
87
2
HOH
HOH
387
A
HOH
88
2
HOH
HOH
388
A
HOH
89
2
HOH
HOH
389
A
HOH
90
2
HOH
HOH
390
A
HOH
91
2
HOH
HOH
391
A
HOH
92
2
HOH
HOH
392
A
HOH
93
2
HOH
HOH
393
A
HOH
94
2
HOH
HOH
394
A
HOH
95
2
HOH
HOH
395
A
HOH
96
2
HOH
HOH
396
A
HOH
97
2
HOH
HOH
397
A
HOH
98
2
HOH
HOH
398
A
HOH
99
2
HOH
HOH
399
A
HOH
100
2
HOH
HOH
400
A
HOH
101
2
HOH
HOH
401
A
HOH
102
2
HOH
HOH
402
A
HOH
103
2
HOH
HOH
403
A
HOH
104
2
HOH
HOH
404
A
HOH
105
2
HOH
HOH
405
A
HOH
106
2
HOH
HOH
406
A
HOH
107
2
HOH
HOH
407
A
HOH
108
2
HOH
HOH
408
A
HOH
109
2
HOH
HOH
409
A
HOH
110
2
HOH
HOH
410
A
HOH
111
2
HOH
HOH
411
A
HOH
112
2
HOH
HOH
412
A
HOH
113
2
HOH
HOH
413
A
HOH
114
2
HOH
HOH
414
A
HOH
115
2
HOH
HOH
415
A
HOH
116
2
HOH
HOH
416
A
HOH
117
2
HOH
HOH
417
A
HOH
118
2
HOH
HOH
418
A
HOH
119
2
HOH
HOH
419
A
HOH
120
2
HOH
HOH
420
A
HOH
121
2
HOH
HOH
421
A
HOH
122
2
HOH
HOH
422
A
HOH
123
2
HOH
HOH
423
A
HOH
124
2
HOH
HOH
424
A
HOH
125
2
HOH
HOH
425
A
HOH
126
2
HOH
HOH
426
A
HOH
127
2
HOH
HOH
427
A
HOH
128
2
HOH
HOH
428
A
HOH
129
2
HOH
HOH
429
A
HOH
130
2
HOH
HOH
430
A
HOH
131
2
HOH
HOH
431
A
HOH
132
2
HOH
HOH
432
A
HOH
133
2
HOH
HOH
433
A
HOH
134
2
HOH
HOH
434
A
HOH
135
2
HOH
HOH
435
A
HOH
136
2
HOH
HOH
436
A
HOH
137
2
HOH
HOH
437
A
HOH
138
2
HOH
HOH
438
A
HOH
139
2
HOH
HOH
439
A
HOH
140
2
HOH
HOH
440
A
HOH
141
2
HOH
HOH
441
A
HOH
142
2
HOH
HOH
442
A
HOH
143
2
HOH
HOH
443
A
HOH
144
2
HOH
HOH
444
A
HOH
145
2
HOH
HOH
445
A
HOH
146
2
HOH
HOH
446
A
HOH
147
2
HOH
HOH
447
A
HOH
148
2
HOH
HOH
448
A
HOH
149
2
HOH
HOH
449
A
HOH
150
2
HOH
HOH
450
A
HOH
151
2
HOH
HOH
451
A
HOH
152
2
HOH
HOH
452
A
HOH
153
2
HOH
HOH
453
A
HOH
154
2
HOH
HOH
454
A
HOH
155
2
HOH
HOH
455
A
HOH
156
2
HOH
HOH
456
A
HOH
157
2
HOH
HOH
457
A
HOH
158
2
HOH
HOH
458
A
HOH
159
2
HOH
HOH
459
A
HOH
160
2
HOH
HOH
460
A
HOH
161
2
HOH
HOH
461
A
HOH
162
2
HOH
HOH
462
A
HOH
163
2
HOH
HOH
463
A
HOH
164
2
HOH
HOH
464
A
HOH
165
2
HOH
HOH
465
A
HOH
166
2
HOH
HOH
466
A
HOH
167
2
HOH
HOH
467
A
HOH
168
2
HOH
HOH
468
A
HOH
169
2
HOH
HOH
469
A
HOH
170
2
HOH
HOH
470
A
HOH
171
2
HOH
HOH
471
A
HOH
172
2
HOH
HOH
472
A
HOH
173
2
HOH
HOH
473
A
HOH
174
2
HOH
HOH
474
A
HOH
175
2
HOH
HOH
475
A
HOH
176
2
HOH
HOH
476
A
HOH
177
2
HOH
HOH
477
A
HOH
178
2
HOH
HOH
478
A
HOH
179
2
HOH
HOH
479
A
HOH
180
2
HOH
HOH
480
A
HOH
181
2
HOH
HOH
481
A
HOH
182
2
HOH
HOH
482
A
HOH
183
2
HOH
HOH
483
A
HOH
184
2
HOH
HOH
484
A
HOH
185
2
HOH
HOH
485
A
HOH
186
2
HOH
HOH
486
A
HOH
187
2
HOH
HOH
487
A
HOH
188
2
HOH
HOH
488
A
HOH
189
2
HOH
HOH
489
A
HOH
190
2
HOH
HOH
490
A
HOH
191
2
HOH
HOH
491
A
HOH
192
2
HOH
HOH
492
A
HOH
193
2
HOH
HOH
493
A
HOH
194
2
HOH
HOH
494
A
HOH
195
2
HOH
HOH
495
A
HOH
196
2
HOH
HOH
496
A
HOH
197
2
HOH
HOH
497
A
HOH
198
2
HOH
HOH
498
A
HOH
199
2
HOH
HOH
499
A
HOH
200
2
HOH
HOH
500
A
HOH
201
2
HOH
HOH
501
A
HOH
202
2
HOH
HOH
502
A
HOH
203
2
HOH
HOH
503
A
HOH
204
2
HOH
HOH
504
A
HOH
205
2
HOH
HOH
505
A
HOH
206
2
HOH
HOH
506
A
HOH
207
2
HOH
HOH
507
A
HOH
208
2
HOH
HOH
508
A
HOH
209
2
HOH
HOH
509
A
HOH
210
2
HOH
HOH
510
A
HOH
211
2
HOH
HOH
511
A
HOH
212
2
HOH
HOH
512
A
HOH
213
2
HOH
HOH
513
A
HOH
214
2
HOH
HOH
514
A
HOH
215
2
HOH
HOH
515
A
HOH
216
2
HOH
HOH
516
A
HOH
217
2
HOH
HOH
517
A
HOH
218
2
HOH
HOH
518
A
HOH
219
2
HOH
HOH
519
A
HOH
220
2
HOH
HOH
520
A
HOH
221
2
HOH
HOH
521
A
HOH
222
2
HOH
HOH
522
A
HOH
223
2
HOH
HOH
523
A
HOH
224
2
HOH
HOH
524
A
HOH
225
2
HOH
HOH
525
A
HOH
226
2
HOH
HOH
526
A
HOH
227
2
HOH
HOH
527
A
HOH
228
2
HOH
HOH
528
A
HOH
229
2
HOH
HOH
529
A
HOH
230
2
HOH
HOH
530
A
HOH
231
2
HOH
HOH
531
A
HOH
232
2
HOH
HOH
532
A
HOH
233
2
HOH
HOH
533
A
HOH
234
2
HOH
HOH
534
A
HOH
235
2
HOH
HOH
535
A
HOH
236
2
HOH
HOH
536
A
HOH
237
2
HOH
HOH
537
A
HOH
238
2
HOH
HOH
538
A
HOH
239
2
HOH
HOH
539
A
HOH
240
2
HOH
HOH
540
A
HOH
241
2
HOH
HOH
541
A
HOH
242
2
HOH
HOH
542
A
HOH
243
2
HOH
HOH
543
A
HOH
244
2
HOH
HOH
544
A
HOH
245
2
HOH
HOH
545
A
HOH
246
2
HOH
HOH
546
A
HOH
247
2
HOH
HOH
547
A
HOH
248
2
HOH
HOH
548
A
HOH
249
2
HOH
HOH
549
A
HOH
250
2
HOH
HOH
550
A
HOH
251
2
HOH
HOH
551
A
HOH
252
2
HOH
HOH
552
A
HOH
253
2
HOH
HOH
553
A
HOH
254
2
HOH
HOH
554
A
HOH
255
2
HOH
HOH
555
A
HOH
256
2
HOH
HOH
556
A
HOH
257
2
HOH
HOH
557
A
HOH
258
2
HOH
HOH
558
A
HOH
259
2
HOH
HOH
559
A
HOH
260
2
HOH
HOH
560
A
HOH
261
2
HOH
HOH
561
A
HOH
262
2
HOH
HOH
562
A
HOH
263
2
HOH
HOH
563
A
HOH
264
2
HOH
HOH
564
A
HOH
265
2
HOH
HOH
565
A
HOH
266
2
HOH
HOH
566
A
HOH
267
2
HOH
HOH
567
A
HOH
268
2
HOH
HOH
568
A
HOH
269
2
HOH
HOH
569
A
HOH
270
2
HOH
HOH
570
A
HOH
271
2
HOH
HOH
571
A
HOH
272
2
HOH
HOH
572
A
HOH
273
2
HOH
HOH
573
A
HOH
274
2
HOH
HOH
574
A
HOH
275
2
HOH
HOH
575
A
HOH
276
2
HOH
HOH
576
A
HOH
277
2
HOH
HOH
577
A
HOH
278
2
HOH
HOH
578
A
HOH
279
2
HOH
HOH
579
A
HOH
280
2
HOH
HOH
580
A
HOH
281
2
HOH
HOH
581
A
HOH
282
2
HOH
HOH
582
A
HOH
283
2
HOH
HOH
583
A
HOH
284
2
HOH
HOH
584
A
HOH
285
2
HOH
HOH
585
A
HOH
286
2
HOH
HOH
586
A
HOH
287
2
HOH
HOH
587
A
HOH
288
2
HOH
HOH
588
A
HOH
289
2
HOH
HOH
589
A
HOH
290
2
HOH
HOH
590
A
HOH
291
2
HOH
HOH
591
A
HOH
292
2
HOH
HOH
592
A
HOH
293
2
HOH
HOH
593
A
HOH
294
2
HOH
HOH
594
A
HOH
295
2
HOH
HOH
595
A
HOH
296
2
HOH
HOH
596
A
HOH
297
2
HOH
HOH
597
A
HOH
298
2
HOH
HOH
598
A
HOH
299
2
HOH
HOH
599
A
HOH
300
2
HOH
HOH
600
A
HOH
301
2
HOH
HOH
601
A
HOH
302
2
HOH
HOH
602
A
HOH
303
2
HOH
HOH
603
A
6.230
6.230
46.970
46.970
n
1
-2
A
n
2
-1
A
n
3
0
A
n
4
1
A
SER
2
n
5
SER
2
A
LYS
3
n
6
LYS
3
A
GLY
4
n
7
GLY
4
A
GLU
5
n
8
GLU
5
A
GLU
6
n
9
GLU
6
A
LEU
7
n
10
LEU
7
A
PHE
8
n
11
PHE
8
A
THR
9
n
12
THR
9
A
GLY
10
n
13
GLY
10
A
VAL
11
n
14
VAL
11
A
VAL
12
n
15
VAL
12
A
PRO
13
n
16
PRO
13
A
ILE
14
n
17
ILE
14
A
LEU
15
n
18
LEU
15
A
VAL
16
n
19
VAL
16
A
GLU
17
n
20
GLU
17
A
LEU
18
n
21
LEU
18
A
ASP
19
n
22
ASP
19
A
GLY
20
n
23
GLY
20
A
ASP
21
n
24
ASP
21
A
VAL
22
n
25
VAL
22
A
ASN
23
n
26
ASN
23
A
GLY
24
n
27
GLY
24
A
HIS
25
n
28
HIS
25
A
LYS
26
n
29
LYS
26
A
PHE
27
n
30
PHE
27
A
SER
28
n
31
SER
28
A
VAL
29
n
32
VAL
29
A
SER
30
n
33
SER
30
A
GLY
31
n
34
GLY
31
A
GLU
32
n
35
GLU
32
A
GLY
33
n
36
GLY
33
A
GLU
34
n
37
GLU
34
A
GLY
35
n
38
GLY
35
A
ASP
36
n
39
ASP
36
A
ALA
37
n
40
ALA
37
A
THR
38
n
41
THR
38
A
TYR
39
n
42
TYR
39
A
GLY
40
n
43
GLY
40
A
LYS
41
n
44
LYS
41
A
LEU
42
n
45
LEU
42
A
THR
43
n
46
THR
43
A
LEU
44
n
47
LEU
44
A
LYS
45
n
48
LYS
45
A
PHE
46
n
49
PHE
46
A
ILE
47
n
50
ILE
47
A
CYS
48
n
51
CYS
48
A
THR
49
n
52
THR
49
A
THR
50
n
53
THR
50
A
GLY
51
n
54
GLY
51
A
LYS
52
n
55
LYS
52
A
LEU
53
n
56
LEU
53
A
PRO
54
n
57
PRO
54
A
VAL
55
n
58
VAL
55
A
PRO
56
n
59
PRO
56
A
TRP
57
n
60
TRP
57
A
PRO
58
n
61
PRO
58
A
THR
59
n
62
THR
59
A
LEU
60
n
63
LEU
60
A
VAL
61
n
64
VAL
61
A
THR
62
n
65
THR
62
A
THR
63
n
66
THR
63
A
LEU
64
n
67
LEU
64
A
CRO
66
n
68
CRO
66
A
VAL
68
n
69
VAL
68
A
GLN
69
n
70
GLN
69
A
CYS
70
n
71
CYS
70
A
PHE
71
n
72
PHE
71
A
ALA
72
n
73
ALA
72
A
ARG
73
n
74
ARG
73
A
TYR
74
n
75
TYR
74
A
PRO
75
n
76
PRO
75
A
ASP
76
n
77
ASP
76
A
HIS
77
n
78
HIS
77
A
MET
78
n
79
MET
78
A
LYS
79
n
80
LYS
79
A
GLN
80
n
81
GLN
80
A
HIS
81
n
82
HIS
81
A
ASP
82
n
83
ASP
82
A
PHE
83
n
84
PHE
83
A
PHE
84
n
85
PHE
84
A
LYS
85
n
86
LYS
85
A
SER
86
n
87
SER
86
A
ALA
87
n
88
ALA
87
A
MET
88
n
89
MET
88
A
PRO
89
n
90
PRO
89
A
GLU
90
n
91
GLU
90
A
GLY
91
n
92
GLY
91
A
TYR
92
n
93
TYR
92
A
VAL
93
n
94
VAL
93
A
GLN
94
n
95
GLN
94
A
GLU
95
n
96
GLU
95
A
ARG
96
n
97
ARG
96
A
THR
97
n
98
THR
97
A
ILE
98
n
99
ILE
98
A
PHE
99
n
100
PHE
99
A
PHE
100
n
101
PHE
100
A
LYS
101
n
102
LYS
101
A
ASP
102
n
103
ASP
102
A
ASP
103
n
104
ASP
103
A
GLY
104
n
105
GLY
104
A
ASN
105
n
106
ASN
105
A
TYR
106
n
107
TYR
106
A
LYS
107
n
108
LYS
107
A
THR
108
n
109
THR
108
A
ARG
109
n
110
ARG
109
A
ALA
110
n
111
ALA
110
A
GLU
111
n
112
GLU
111
A
VAL
112
n
113
VAL
112
A
LYS
113
n
114
LYS
113
A
PHE
114
n
115
PHE
114
A
GLU
115
n
116
GLU
115
A
GLY
116
n
117
GLY
116
A
ASP
117
n
118
ASP
117
A
THR
118
n
119
THR
118
A
LEU
119
n
120
LEU
119
A
VAL
120
n
121
VAL
120
A
ASN
121
n
122
ASN
121
A
ARG
122
n
123
ARG
122
A
ILE
123
n
124
ILE
123
A
GLU
124
n
125
GLU
124
A
LEU
125
n
126
LEU
125
A
LYS
126
n
127
LYS
126
A
GLY
127
n
128
GLY
127
A
ILE
128
n
129
ILE
128
A
ASP
129
n
130
ASP
129
A
PHE
130
n
131
PHE
130
A
LYS
131
n
132
LYS
131
A
GLU
132
n
133
GLU
132
A
ASP
133
n
134
ASP
133
A
GLY
134
n
135
GLY
134
A
ASN
135
n
136
ASN
135
A
ILE
136
n
137
ILE
136
A
LEU
137
n
138
LEU
137
A
GLY
138
n
139
GLY
138
A
HIS
139
n
140
HIS
139
A
LYS
140
n
141
LYS
140
A
LEU
141
n
142
LEU
141
A
GLU
142
n
143
GLU
142
A
TYR
143
n
144
TYR
143
A
ASN
144
n
145
ASN
144
A
TYR
145
n
146
TYR
145
A
ASN
146
n
147
ASN
146
A
HIS
147
n
148
HIS
147
A
HIS
148
n
149
HIS
148
A
LYS
149
n
150
LYS
149
A
VAL
150
n
151
VAL
150
A
TYR
151
n
152
TYR
151
A
ILE
152
n
153
ILE
152
A
THR
153
n
154
THR
153
A
ALA
154
n
155
ALA
154
A
ASP
155
n
156
ASP
155
A
LYS
156
n
157
LYS
156
A
GLN
157
n
158
GLN
157
A
LYS
158
n
159
LYS
158
A
ASN
159
n
160
ASN
159
A
GLY
160
n
161
GLY
160
A
ILE
161
n
162
ILE
161
A
LYS
162
n
163
LYS
162
A
VAL
163
n
164
VAL
163
A
ASN
164
n
165
ASN
164
A
PHE
165
n
166
PHE
165
A
LYS
166
n
167
LYS
166
A
THR
167
n
168
THR
167
A
ARG
168
n
169
ARG
168
A
HIS
169
n
170
HIS
169
A
ASN
170
n
171
ASN
170
A
ILE
171
n
172
ILE
171
A
GLU
172
n
173
GLU
172
A
ASP
173
n
174
ASP
173
A
GLY
174
n
175
GLY
174
A
SER
175
n
176
SER
175
A
VAL
176
n
177
VAL
176
A
GLN
177
n
178
GLN
177
A
LEU
178
n
179
LEU
178
A
ALA
179
n
180
ALA
179
A
ASP
180
n
181
ASP
180
A
HIS
181
n
182
HIS
181
A
TYR
182
n
183
TYR
182
A
GLN
183
n
184
GLN
183
A
GLN
184
n
185
GLN
184
A
ASN
185
n
186
ASN
185
A
THR
186
n
187
THR
186
A
PRO
187
n
188
PRO
187
A
ILE
188
n
189
ILE
188
A
GLY
189
n
190
GLY
189
A
ASP
190
n
191
ASP
190
A
GLY
191
n
192
GLY
191
A
PRO
192
n
193
PRO
192
A
VAL
193
n
194
VAL
193
A
LEU
194
n
195
LEU
194
A
LEU
195
n
196
LEU
195
A
PRO
196
n
197
PRO
196
A
ASP
197
n
198
ASP
197
A
ASN
198
n
199
ASN
198
A
HIS
199
n
200
HIS
199
A
TYR
200
n
201
TYR
200
A
LEU
201
n
202
LEU
201
A
HIS
202
n
203
HIS
202
A
THR
203
n
204
THR
203
A
HIS
204
n
205
HIS
204
A
SER
205
n
206
SER
205
A
LYS
206
n
207
LYS
206
A
LEU
207
n
208
LEU
207
A
SER
208
n
209
SER
208
A
LYS
209
n
210
LYS
209
A
ASP
210
n
211
ASP
210
A
PRO
211
n
212
PRO
211
A
ASN
212
n
213
ASN
212
A
GLU
213
n
214
GLU
213
A
LYS
214
n
215
LYS
214
A
ARG
215
n
216
ARG
215
A
ASP
216
n
217
ASP
216
A
HIS
217
n
218
HIS
217
A
MET
218
n
219
MET
218
A
VAL
219
n
220
VAL
219
A
LEU
220
n
221
LEU
220
A
LEU
221
n
222
LEU
221
A
GLU
222
n
223
GLU
222
A
PHE
223
n
224
PHE
223
A
VAL
224
n
225
VAL
224
A
THR
225
n
226
THR
225
A
ALA
226
n
227
ALA
226
A
ALA
227
n
228
ALA
227
A
GLY
228
n
229
GLY
228
A
ILE
229
n
230
ILE
229
A
THR
230
n
231
THR
230
A
LEU
231
n
232
LEU
231
A
n
233
232
A
n
234
233
A
n
235
234
A
n
236
235
A
n
237
236
A
n
238
237
A
n
239
238
A
6.9422
1.4834
-0.6529
0.9654
-0.0309
1.2153
0.1399
-0.0676
-0.0329
0.0429
0.0313
-0.0186
-0.1517
0.1419
-0.1594
0.1659
-0.0588
0.0471
0.2248
-0.0606
0.1561
refined
5.8131
34.8751
10.6333
X-RAY DIFFRACTION
2.0235
1.3662
0.0986
2.5201
0.5919
1.5618
0.0724
0.0104
0.2630
-0.0952
0.0666
0.0649
-0.5582
0.2005
-0.0565
0.2276
-0.0837
0.0497
0.1802
-0.0546
0.1739
refined
9.8511
41.3592
5.1179
X-RAY DIFFRACTION
1.6696
1.5808
0.5822
5.6767
2.1659
2.5332
0.0439
-0.1210
-0.1196
0.0898
-0.0393
0.4711
0.2803
-0.5372
0.0129
0.1193
-0.0459
-0.0254
0.1521
0.0217
0.1664
refined
-1.3023
21.3211
1.2920
X-RAY DIFFRACTION
1.1908
0.6221
0.4139
1.0013
0.0700
0.6352
0.1092
-0.1426
0.0047
0.1590
0.1229
-0.1214
0.1274
0.4535
-0.1501
0.1210
-0.0333
-0.0008
0.2715
-0.0825
0.1466
refined
12.5488
30.8642
10.1624
X-RAY DIFFRACTION
0.4808
0.0409
0.4292
0.3889
0.0646
0.3938
0.0938
0.2377
0.1269
-0.0993
0.1807
-0.3286
-0.5701
0.7063
0.3214
0.3275
-0.3814
0.1150
0.5590
-0.0850
0.2898
refined
21.6845
42.0788
-4.9024
X-RAY DIFFRACTION
1.8710
2.0227
-1.3353
6.2596
-2.7467
3.0751
0.0025
0.0609
-0.2071
0.1030
0.0194
-0.4026
0.1013
0.3749
0.0149
0.1403
0.0328
-0.0524
0.1898
-0.0755
0.1738
refined
13.5753
23.0041
0.0983
X-RAY DIFFRACTION
1.8902
-0.2206
-0.6204
0.7366
0.8338
1.0021
0.1094
0.1781
-0.1195
-0.0944
0.0897
-0.3348
-0.1789
0.7668
-0.0762
0.1772
-0.0510
0.0049
0.3548
-0.1128
0.1539
refined
18.4979
30.8766
-1.8321
X-RAY DIFFRACTION
1.2240
0.1500
0.3857
1.2152
0.6047
1.8489
0.2021
-0.1131
0.0922
0.2790
-0.2053
0.1237
-0.1936
-0.0112
-0.0317
0.1989
-0.0554
0.0165
0.1305
-0.0149
0.1266
refined
5.1885
32.1855
1.0626
X-RAY DIFFRACTION
A
0
A
0
X-RAY DIFFRACTION
1
chain 'A' and (resid 2 through 24 )
A
0
A
0
X-RAY DIFFRACTION
2
chain 'A' and (resid 25 through 68 )
A
0
A
0
X-RAY DIFFRACTION
3
chain 'A' and (resid 69 through 81 )
A
0
A
0
X-RAY DIFFRACTION
4
chain 'A' and (resid 82 through 128 )
A
0
A
0
X-RAY DIFFRACTION
5
chain 'A' and (resid 129 through 147 )
A
0
A
0
X-RAY DIFFRACTION
6
chain 'A' and (resid 148 through 170 )
A
0
A
0
X-RAY DIFFRACTION
7
chain 'A' and (resid 171 through 187 )
A
0
A
0
X-RAY DIFFRACTION
8
chain 'A' and (resid 188 through 231 )
author_and_software_defined_assembly
PISA
1
monomeric
A
CRO
66
A
CRO
68
GLY
A
CRO
66
A
CRO
68
TYR
A
CRO
66
A
CRO
68
GLY
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
VAL
16
A
N
VAL
19
A
O
GLY
31
A
O
GLY
34
A
N
ASP
36
A
N
ASP
39
A
O
LYS
41
A
O
LYS
44
A
N
LEU
44
A
N
LEU
47
A
O
LEU
220
A
O
LEU
221
A
O
THR
225
A
O
THR
226
A
N
HIS
202
A
N
HIS
203
A
O
HIS
199
A
O
HIS
200
A
N
ILE
152
A
N
ILE
153
A
N
ASP
155
A
N
ASP
156
A
O
GLY
160
A
O
GLY
161
A
N
PHE
165
A
N
PHE
166
A
O
HIS
181
A
O
HIS
182
A
O
GLN
184
A
O
GLN
185
A
N
GLU
95
A
N
GLU
96
A
N
ILE
98
A
N
ILE
99
A
O
TYR
106
A
O
TYR
107
A
N
LYS
113
A
N
LYS
114
A
O
VAL
120
A
O
VAL
121
A
O
GLY
127
A
O
GLY
128
A
N
ASP
21
A
N
ASP
24
1
A
CD
LYS
3
A
CD
LYS
6
1
Y
1
A
CE
LYS
3
A
CE
LYS
6
1
Y
1
A
NZ
LYS
3
A
NZ
LYS
6
1
Y
1
A
CD
GLU
5
A
CD
GLU
8
1
Y
1
A
OE1
GLU
5
A
OE1
GLU
8
1
Y
1
A
OE2
GLU
5
A
OE2
GLU
8
1
Y
1
A
CD
GLU
6
A
CD
GLU
9
1
Y
1
A
OE1
GLU
6
A
OE1
GLU
9
1
Y
1
A
OE2
GLU
6
A
OE2
GLU
9
1
Y
1
A
CE
LYS
52
A
CE
LYS
55
1
Y
1
A
NZ
LYS
52
A
NZ
LYS
55
1
Y
1
A
CE
LYS
107
A
CE
LYS
108
1
Y
1
A
NZ
LYS
107
A
NZ
LYS
108
1
Y
1
A
CE
LYS
113
A
CE
LYS
114
1
Y
1
A
NZ
LYS
113
A
NZ
LYS
114
1
Y
1
A
NZ
LYS
131
A
NZ
LYS
132
1
Y
1
A
CG
GLU
132
A
CG
GLU
133
1
Y
1
A
CD
GLU
132
A
CD
GLU
133
1
Y
1
A
OE1
GLU
132
A
OE1
GLU
133
1
Y
1
A
OE2
GLU
132
A
OE2
GLU
133
1
Y
1
A
NZ
LYS
158
A
NZ
LYS
159
1
Y
1
A
NZ
LYS
162
A
NZ
LYS
163
1
Y
1
A
CD
LYS
166
A
CD
LYS
167
1
Y
1
A
CE
LYS
166
A
CE
LYS
167
1
Y
1
A
NZ
LYS
166
A
NZ
LYS
167
1
Y
1
A
CG
GLU
172
A
CG
GLU
173
1
Y
1
A
CD
GLU
172
A
CD
GLU
173
1
Y
1
A
OE1
GLU
172
A
OE1
GLU
173
1
Y
1
A
OE2
GLU
172
A
OE2
GLU
173
1
Y
1
A
CG
LEU
178
A
CG
LEU
179
1
Y
1
A
CD1
LEU
178
A
CD1
LEU
179
1
Y
1
A
CD2
LEU
178
A
CD2
LEU
179
1
Y
1
A
CD
GLN
184
A
CD
GLN
185
1
Y
1
A
OE1
GLN
184
A
OE1
GLN
185
1
Y
1
A
NE2
GLN
184
A
NE2
GLN
185
1
Y
1
A
CE
LYS
206
A
CE
LYS
207
1
Y
1
A
NZ
LYS
206
A
NZ
LYS
207
1
Y
1
A
CD
LYS
214
A
CD
LYS
215
1
Y
1
A
CE
LYS
214
A
CE
LYS
215
1
Y
1
A
NZ
LYS
214
A
NZ
LYS
215
1
Y
1
A
GLY
-2
A
GLY
1
1
Y
1
A
SER
-1
A
SER
2
1
Y
1
A
MET
0
A
MET
3
1
Y
1
A
VAL
1
A
VAL
4
1
Y
1
A
GLY
232
A
GLY
233
1
Y
1
A
MET
233
A
MET
234
1
Y
1
A
ASP
234
A
ASP
235
1
Y
1
A
GLU
235
A
GLU
236
1
Y
1
A
LEU
236
A
LEU
237
1
Y
1
A
TYR
237
A
TYR
238
1
Y
1
A
LYS
238
A
LYS
239
1
Y
1
A
A
HD1
O
HIS
HOH
204
373
1.46
1
A
A
O
O
HOH
HOH
459
539
2.19
1
A
A
O
O
HOH
HOH
386
416
2.19
1
A
A
OE1
HE2
GLU
HIS
115
204
1.54
1_555
3_555
70.010
25.9969
9.110
0.2045
0.1701
0.217
0.1723
1.7460
23.0540
2000
31878
31868
6.2800
99.8800
1.000
0.180
0.8700
0.1900
Random
1
1.380
MOLECULAR REPLACEMENT
19.6800
0.9000
1.1100
ML
FLAT BULK SOLVENT MODEL
1.7460
23.0540
303
2098
0
0
1795
0.011
1928
1.399
2631
0.081
284
0.006
348
14.575
707
0.3455
0.3050
1.7896
138
2070
2208
14
100.0000
0.3011
0.2680
1.8380
141
2087
2228
14
100.0000
0.2530
0.2489
1.8920
140
2097
2237
14
100.0000
0.2224
0.2226
1.9531
140
2088
2228
14
100.0000
0.2131
0.1938
2.0228
141
2120
2261
14
100.0000
0.2297
0.1793
2.1038
141
2100
2241
14
100.0000
0.2313
0.1639
2.1995
141
2104
2245
14
100.0000
0.2273
0.1675
2.3153
141
2110
2251
14
100.0000
0.2033
0.1630
2.4602
143
2134
2277
14
100.0000
0.2243
0.1570
2.6499
144
2138
2282
14
100.0000
0.1971
0.1701
2.9161
144
2150
2294
14
100.0000
0.1811
0.1502
3.3370
144
2155
2299
14
100.0000
0.1788
0.1431
4.2001
146
2191
2337
14
100.0000
0.1778
0.1575
23.0563
156
2324
2480
14
100.0000
29.0
1.746
50.000
4KW4
31994
31923
1
1
0.088
1.312
1
8.700
8.300
99.800
0.822
1.746
1.810
3125
1.049
1
7.200
100.000
0.667
1.810
1.890
3114
1.056
1
7.400
99.700
0.499
1.890
1.970
3132
1.115
1
7.700
99.700
0.368
1.970
2.070
3142
1.145
1
8.100
99.800
0.268
2.070
2.200
3155
1.190
1
8.300
99.900
0.198
2.200
2.380
3176
1.215
1
8.400
99.900
0.142
2.380
2.610
3183
1.371
1
8.600
99.900
0.107
2.610
2.990
3200
1.730
1
8.800
99.900
0.055
2.990
3.770
3259
1.759
1
9.100
99.900
0.031
3.770
50.000
3437
1.287
1
8.800
99.200
data reduction
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
DENZO
program
data scaling
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
SCALEPACK
program
phasing
Randy J. Read
cimr-phaser@lists.cam.ac.uk
Sat Jun 2 05:21:23 2012 (svn )
http://www-structmed.cimr.cam.ac.uk/phaser/
PHASER
program
2.5.0
refinement
Paul D. Adams
PDAdams@lbl.gov
C++
http://www.phenix-online.org/
PHENIX
package
1.8.2_1309
data extraction
PDB
deposit@deposit.rcsb.org
April 22, 2011
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.11
data collection
SERGUI
Crystal Structure of Green Fluorescent Protein
1
N
N
2
N
N
A
LYS
3
A
LYS
6
HELX_P
A
THR
9
A
THR
12
5
1
7
A
PRO
56
A
PRO
59
HELX_P
A
VAL
61
A
VAL
64
5
2
6
A
VAL
68
A
VAL
69
HELX_P
A
ALA
72
A
ALA
73
5
3
5
A
PRO
75
A
PRO
76
HELX_P
A
HIS
81
A
HIS
82
5
4
7
A
ASP
82
A
ASP
83
HELX_P
A
ALA
87
A
ALA
88
1
5
6
A
LYS
156
A
LYS
157
HELX_P
A
ASN
159
A
ASN
160
5
6
4
covale
1.331
both
A
LEU
64
A
C
LEU
67
1_555
A
CRO
66
A
N1
CRO
68
1_555
covale
1.352
both
A
CRO
66
A
C3
CRO
68
1_555
A
VAL
68
A
N
VAL
69
1_555
FLUORESCENT PROTEIN
beta barrel, fluorescent protein, chromophore
A
MET
88
A
MET
89
1
A
PRO
89
A
PRO
90
6.13
GFP_AEQVI
UNP
1
2
P42212
SKGEELFTGVVPILVELDGDVNGHKFSVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTFSYGVQCFSRYPDHMKQH
DFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNYNSHNVYIMADKQKNGI
KVNFKIRHNIEDGSVQLADHYQQNTPIGDGPVLLPDNHYLSTQSALSKDPNEKRDHMVLLEFVTAAGITHGMDELYK
2
238
4KW4
2
238
P42212
A
1
5
239
1
expression tag
GLY
-2
4KW4
A
P42212
UNP
1
1
expression tag
SER
-1
4KW4
A
P42212
UNP
2
1
expression tag
MET
0
4KW4
A
P42212
UNP
3
1
expression tag
VAL
1
4KW4
A
P42212
UNP
4
1
PHE
SEE REMARK 999
LEU
64
4KW4
A
P42212
UNP
64
67
1
SER
chromophore
CRO
66
4KW4
A
P42212
UNP
65
68
1
TYR
chromophore
CRO
66
4KW4
A
P42212
UNP
66
68
1
GLY
chromophore
CRO
66
4KW4
A
P42212
UNP
67
68
1
SER
SEE REMARK 999
ALA
72
4KW4
A
P42212
UNP
72
73
1
SER
engineered mutation
HIS
147
4KW4
A
P42212
UNP
147
148
1
ASN
SEE REMARK 999
LYS
149
4KW4
A
P42212
UNP
149
150
1
MET
SEE REMARK 999
THR
153
4KW4
A
P42212
UNP
153
154
1
ILE
SEE REMARK 999
THR
167
4KW4
A
P42212
UNP
167
168
1
SER
engineered mutation
HIS
202
4KW4
A
P42212
UNP
202
203
1
GLN
engineered mutation
HIS
204
4KW4
A
P42212
UNP
204
205
1
ALA
engineered mutation
LYS
206
4KW4
A
P42212
UNP
206
207
1
HIS
SEE REMARK 999
LEU
231
4KW4
A
P42212
UNP
231
232
12
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
A
VAL
11
A
VAL
14
A
VAL
22
A
VAL
25
A
HIS
25
A
HIS
28
A
ASP
36
A
ASP
39
A
LYS
41
A
LYS
44
A
CYS
48
A
CYS
51
A
HIS
217
A
HIS
218
A
ALA
227
A
ALA
228
A
HIS
199
A
HIS
200
A
SER
208
A
SER
209
A
HIS
147
A
HIS
148
A
ASP
155
A
ASP
156
A
GLY
160
A
GLY
161
A
ASN
170
A
ASN
171
A
VAL
176
A
VAL
177
A
PRO
187
A
PRO
188
A
TYR
92
A
TYR
93
A
PHE
100
A
PHE
101
A
ASN
105
A
ASN
106
A
GLU
115
A
GLU
116
A
THR
118
A
THR
119
A
ILE
128
A
ILE
129
A
VAL
11
A
VAL
14
A
VAL
22
A
VAL
25
92
P 41 21 2