0.010786
0.006227
0.000000
0.000000
0.012454
0.000000
0.000000
0.000000
0.010231
0.000000
0.000000
0.000000
Davenport, A.M.
Huber, F.M.
Hoelz, A.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
6
90.000
90.000
120.000
92.714
92.714
97.745
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C15 H23 N5 O14 P2
559.316
ADENOSINE-5-DIPHOSPHORIBOSE
non-polymer
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C2 H6 O S
78.133
BETA-MERCAPTOETHANOL
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C3 H8 O3
92.094
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Zn 2
65.409
ZINC ION
non-polymer
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
Y
14
N
N
Y
15
N
C
Y
16
N
N
Y
17
N
C
Y
18
N
C
Y
19
N
C
N
20
N
N
Y
21
N
N
Y
22
N
C
Y
23
N
N
N
24
R
C
N
25
R
C
N
26
N
O
N
27
S
C
N
28
N
O
N
29
N
O
N
30
R
C
N
31
N
C
N
32
N
O
N
33
S
P
N
34
N
O
N
35
N
O
N
36
N
O
N
37
R
P
N
38
N
O
N
39
N
O
N
40
N
O
N
41
N
C
N
42
N
O
N
43
N
O
N
44
R
C
N
45
N
O
N
46
R
C
N
47
N
O
N
48
S
C
N
49
R
C
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
N
N
74
S
C
N
75
N
C
N
76
N
O
N
77
N
C
N
78
N
C
N
79
N
C
N
80
N
N
N
81
N
C
N
82
N
N
N
83
N
N
N
84
N
O
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
N
N
101
S
C
N
102
N
C
N
103
N
O
N
104
N
C
N
105
N
C
N
106
N
O
N
107
N
N
N
108
N
O
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
N
N
118
S
C
N
119
N
C
N
120
N
O
N
121
N
C
N
122
N
C
N
123
N
O
N
124
N
O
N
125
N
O
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
C
N
134
N
C
N
135
N
O
N
136
N
S
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
N
N
144
R
C
N
145
N
C
N
146
N
O
N
147
N
C
N
148
N
S
N
149
N
O
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
N
N
158
S
C
N
159
N
C
N
160
N
O
N
161
N
C
N
162
N
C
N
163
N
C
N
164
N
O
N
165
N
N
N
166
N
O
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
N
N
178
S
C
N
179
N
C
N
180
N
O
N
181
N
C
N
182
N
C
N
183
N
C
N
184
N
O
N
185
N
O
N
186
N
O
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
N
N
197
N
C
N
198
N
C
N
199
N
O
N
200
N
O
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
C
N
207
N
O
N
208
N
C
N
209
N
O
N
210
N
C
N
211
N
O
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
N
N
221
S
C
N
222
N
C
N
223
N
O
N
224
N
C
Y
225
N
C
Y
226
N
N
Y
227
N
C
Y
228
N
C
Y
229
N
N
N
230
N
O
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
O
N
242
N
H
N
243
N
H
N
244
N
N
N
245
S
C
N
246
N
C
N
247
N
O
N
248
S
C
N
249
N
C
N
250
N
C
N
251
N
C
N
252
N
O
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
N
N
267
S
C
N
268
N
C
N
269
N
O
N
270
N
C
N
271
N
C
N
272
N
C
N
273
N
C
N
274
N
O
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
N
N
289
S
C
N
290
N
C
N
291
N
O
N
292
N
C
N
293
N
C
N
294
N
C
N
295
N
C
N
296
N
N
N
297
N
O
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
N
N
314
S
C
N
315
N
C
N
316
N
O
N
317
N
C
N
318
N
C
N
319
N
S
N
320
N
C
N
321
N
O
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
N
N
334
S
C
N
335
N
C
N
336
N
O
N
337
N
C
Y
338
N
C
Y
339
N
C
Y
340
N
C
Y
341
N
C
Y
342
N
C
Y
343
N
C
N
344
N
O
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
N
N
357
S
C
N
358
N
C
N
359
N
O
N
360
N
C
N
361
N
C
N
362
N
C
N
363
N
O
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
N
N
374
S
C
N
375
N
C
N
376
N
O
N
377
N
C
N
378
N
O
N
379
N
O
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
N
N
388
S
C
N
389
N
C
N
390
N
O
N
391
R
C
N
392
N
O
N
393
N
C
N
394
N
O
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
N
N
405
S
C
N
406
N
C
N
407
N
O
N
408
N
C
Y
409
N
C
Y
410
N
C
Y
411
N
C
Y
412
N
C
Y
413
N
C
Y
414
N
C
N
415
N
O
N
416
N
O
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
N
N
429
S
C
N
430
N
C
N
431
N
O
N
432
N
C
N
433
N
C
N
434
N
C
N
435
N
O
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
ZN
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
Y
13
N
sing
Y
14
N
doub
Y
15
N
doub
N
16
N
sing
Y
17
N
sing
Y
18
N
doub
Y
19
N
sing
Y
20
N
sing
Y
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
Y
25
N
doub
Y
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
doub
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
doub
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
doub
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
doub
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
doub
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
doub
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
doub
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
doub
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
doub
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
doub
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
doub
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
doub
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
doub
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
doub
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
Y
224
N
sing
Y
225
N
doub
Y
226
N
doub
N
227
N
sing
Y
228
N
sing
N
229
N
sing
Y
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
doub
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
doub
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
doub
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
doub
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
doub
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
Y
332
N
doub
Y
333
N
sing
Y
334
N
sing
N
335
N
sing
Y
336
N
doub
N
337
N
sing
Y
338
N
doub
N
339
N
sing
Y
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
doub
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
doub
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
doub
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
doub
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
Y
401
N
doub
Y
402
N
sing
Y
403
N
sing
N
404
N
sing
Y
405
N
doub
N
406
N
sing
Y
407
N
doub
N
408
N
sing
Y
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
doub
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
426
526
541
10.1016/j.jmb.2013.10.009
24120939
Structural and Functional Analysis of Human SIRT1.
2014
10.2210/pdb4kxq/pdb
pdb_00004kxq
100
1
PIXEL
2013-04-26
DECTRIS PILATUS 6M
Liquid nitrogen-cooled double crystal Si(111)
SINGLE WAVELENGTH
M
x-ray
1
1.28210
1.0
BL12-2
SSRL
1.28210
SYNCHROTRON
SSRL BEAMLINE BL12-2
31833.107
NAD-dependent protein deacetylase sirtuin-1
3.5.1.-
deacetylase domain (UNP residues 234-510)
1
man
polymer
3429.748
NAD-dependent protein deacetylase sirtuin-1
UNP residues 641-663
1
man
polymer
65.409
ZINC ION
1
syn
non-polymer
559.316
ADENOSINE-5-DIPHOSPHORIBOSE
1
syn
non-polymer
78.133
BETA-MERCAPTOETHANOL
1
syn
non-polymer
92.094
GLYCEROL
1
syn
non-polymer
18.015
water
300
nat
water
SIRT1, hSIRT1, Regulatory protein SIR2 homolog 1, SIR2-like protein 1, hSIR2
SIRT1, hSIRT1, Regulatory protein SIR2 homolog 1, SIR2-like protein 1, hSIR2
no
no
GPHMRKKRKDINTIEDAVKLLQECKKIIVLTGAGVSVSCGIPDFRSRDGIYARLAVDFPDLPDPQAMFDIEYFRKDPRPF
FKFAKEIYPGQFQPSLCHKFIALSDKEGKLLRNYTQNIDTLEQVAGIQRIIQCHGSFATASCLICKYKVDCEAVRGDIFN
QVVPRCPRCPADEPLAIMKPEIVFFGENLPEQFHRAMKYDKDEVDLLIVIGSSLKVRPVALIPSSIPHEVPQILINREPL
PHLHFDVELLGDCDVIINELCHRLGGEYAKLCCNPVKLSEI
GPHMRKKRKDINTIEDAVKLLQECKKIIVLTGAGVSVSCGIPDFRSRDGIYARLAVDFPDLPDPQAMFDIEYFRKDPRPF
FKFAKEIYPGQFQPSLCHKFIALSDKEGKLLRNYTQNIDTLEQVAGIQRIIQCHGSFATASCLICKYKVDCEAVRGDIFN
QVVPRCPRCPADEPLAIMKPEIVFFGENLPEQFHRAMKYDKDEVDLLIVIGSSLKVRPVALIPSSIPHEVPQILINREPL
PHLHFDVELLGDCDVIINELCHRLGGEYAKLCCNPVKLSEI
A
polypeptide(L)
no
no
GPHMGSQYLFLPPNRYIFHGAEVYSDSEDV
GPHMGSQYLFLPPNRYIFHGAEVYSDSEDV
B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
sample
9606
Homo sapiens
469008
Escherichia coli
Bl21(DE3) RIL
human
sample
9606
Homo sapiens
469008
Escherichia coli
Bl21(DE3) RIL
1
3.44
64.23
7.4
100 mM Tris, pH 7.4, 13% PEG20000
chem_comp_atom
chem_comp_bond
database_2
pdbx_struct_conn_angle
struct_conn
struct_ref_seq_dif
struct_site
repository
Initial release
Database references
Structure summary
Database references
Data collection
Database references
Derived calculations
1
0
2013-10-23
1
1
2013-11-06
1
2
2014-02-05
1
3
2024-02-28
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_seq_id
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
RCSB
2013-05-27
REL
REL
ZN
ZINC ION
APR
ADENOSINE-5-DIPHOSPHORIBOSE
BME
BETA-MERCAPTOETHANOL
GOL
GLYCEROL
HOH
water
ZN
1
3
ZN
ZN
601
A
APR
1
4
APR
APR
602
A
BME
1
5
BME
BME
603
A
GOL
2
6
GOL
GOL
604
A
HOH
1
7
HOH
HOH
701
A
HOH
2
7
HOH
HOH
702
A
HOH
3
7
HOH
HOH
703
A
HOH
5
7
HOH
HOH
704
A
HOH
6
7
HOH
HOH
705
A
HOH
9
7
HOH
HOH
706
A
HOH
11
7
HOH
HOH
707
A
HOH
12
7
HOH
HOH
708
A
HOH
13
7
HOH
HOH
709
A
HOH
14
7
HOH
HOH
710
A
HOH
15
7
HOH
HOH
711
A
HOH
16
7
HOH
HOH
712
A
HOH
18
7
HOH
HOH
713
A
HOH
19
7
HOH
HOH
714
A
HOH
21
7
HOH
HOH
715
A
HOH
22
7
HOH
HOH
716
A
HOH
23
7
HOH
HOH
717
A
HOH
24
7
HOH
HOH
718
A
HOH
25
7
HOH
HOH
719
A
HOH
26
7
HOH
HOH
720
A
HOH
27
7
HOH
HOH
721
A
HOH
28
7
HOH
HOH
722
A
HOH
29
7
HOH
HOH
723
A
HOH
30
7
HOH
HOH
724
A
HOH
31
7
HOH
HOH
725
A
HOH
33
7
HOH
HOH
726
A
HOH
34
7
HOH
HOH
727
A
HOH
36
7
HOH
HOH
728
A
HOH
37
7
HOH
HOH
729
A
HOH
38
7
HOH
HOH
730
A
HOH
39
7
HOH
HOH
731
A
HOH
40
7
HOH
HOH
732
A
HOH
41
7
HOH
HOH
733
A
HOH
44
7
HOH
HOH
734
A
HOH
45
7
HOH
HOH
735
A
HOH
46
7
HOH
HOH
736
A
HOH
48
7
HOH
HOH
737
A
HOH
49
7
HOH
HOH
738
A
HOH
50
7
HOH
HOH
739
A
HOH
51
7
HOH
HOH
740
A
HOH
52
7
HOH
HOH
741
A
HOH
53
7
HOH
HOH
742
A
HOH
54
7
HOH
HOH
743
A
HOH
58
7
HOH
HOH
744
A
HOH
59
7
HOH
HOH
745
A
HOH
60
7
HOH
HOH
746
A
HOH
61
7
HOH
HOH
747
A
HOH
62
7
HOH
HOH
748
A
HOH
63
7
HOH
HOH
749
A
HOH
64
7
HOH
HOH
750
A
HOH
65
7
HOH
HOH
751
A
HOH
66
7
HOH
HOH
752
A
HOH
68
7
HOH
HOH
753
A
HOH
69
7
HOH
HOH
754
A
HOH
70
7
HOH
HOH
755
A
HOH
71
7
HOH
HOH
756
A
HOH
72
7
HOH
HOH
757
A
HOH
73
7
HOH
HOH
758
A
HOH
74
7
HOH
HOH
759
A
HOH
75
7
HOH
HOH
760
A
HOH
76
7
HOH
HOH
761
A
HOH
77
7
HOH
HOH
762
A
HOH
78
7
HOH
HOH
763
A
HOH
79
7
HOH
HOH
764
A
HOH
80
7
HOH
HOH
765
A
HOH
81
7
HOH
HOH
766
A
HOH
83
7
HOH
HOH
767
A
HOH
84
7
HOH
HOH
768
A
HOH
85
7
HOH
HOH
769
A
HOH
86
7
HOH
HOH
770
A
HOH
87
7
HOH
HOH
771
A
HOH
88
7
HOH
HOH
772
A
HOH
90
7
HOH
HOH
773
A
HOH
91
7
HOH
HOH
774
A
HOH
92
7
HOH
HOH
775
A
HOH
93
7
HOH
HOH
776
A
HOH
94
7
HOH
HOH
777
A
HOH
95
7
HOH
HOH
778
A
HOH
96
7
HOH
HOH
779
A
HOH
97
7
HOH
HOH
780
A
HOH
98
7
HOH
HOH
781
A
HOH
99
7
HOH
HOH
782
A
HOH
100
7
HOH
HOH
783
A
HOH
101
7
HOH
HOH
784
A
HOH
102
7
HOH
HOH
785
A
HOH
103
7
HOH
HOH
786
A
HOH
104
7
HOH
HOH
787
A
HOH
105
7
HOH
HOH
788
A
HOH
106
7
HOH
HOH
789
A
HOH
107
7
HOH
HOH
790
A
HOH
108
7
HOH
HOH
791
A
HOH
109
7
HOH
HOH
792
A
HOH
110
7
HOH
HOH
793
A
HOH
111
7
HOH
HOH
794
A
HOH
112
7
HOH
HOH
795
A
HOH
113
7
HOH
HOH
796
A
HOH
114
7
HOH
HOH
797
A
HOH
115
7
HOH
HOH
798
A
HOH
116
7
HOH
HOH
799
A
HOH
117
7
HOH
HOH
800
A
HOH
118
7
HOH
HOH
801
A
HOH
119
7
HOH
HOH
802
A
HOH
120
7
HOH
HOH
803
A
HOH
121
7
HOH
HOH
804
A
HOH
123
7
HOH
HOH
805
A
HOH
124
7
HOH
HOH
806
A
HOH
125
7
HOH
HOH
807
A
HOH
126
7
HOH
HOH
808
A
HOH
127
7
HOH
HOH
809
A
HOH
128
7
HOH
HOH
810
A
HOH
129
7
HOH
HOH
811
A
HOH
130
7
HOH
HOH
812
A
HOH
131
7
HOH
HOH
813
A
HOH
132
7
HOH
HOH
814
A
HOH
133
7
HOH
HOH
815
A
HOH
134
7
HOH
HOH
816
A
HOH
135
7
HOH
HOH
817
A
HOH
136
7
HOH
HOH
818
A
HOH
137
7
HOH
HOH
819
A
HOH
138
7
HOH
HOH
820
A
HOH
140
7
HOH
HOH
821
A
HOH
141
7
HOH
HOH
822
A
HOH
142
7
HOH
HOH
823
A
HOH
143
7
HOH
HOH
824
A
HOH
144
7
HOH
HOH
825
A
HOH
145
7
HOH
HOH
826
A
HOH
146
7
HOH
HOH
827
A
HOH
147
7
HOH
HOH
828
A
HOH
148
7
HOH
HOH
829
A
HOH
149
7
HOH
HOH
830
A
HOH
150
7
HOH
HOH
831
A
HOH
151
7
HOH
HOH
832
A
HOH
152
7
HOH
HOH
833
A
HOH
153
7
HOH
HOH
834
A
HOH
154
7
HOH
HOH
835
A
HOH
155
7
HOH
HOH
836
A
HOH
156
7
HOH
HOH
837
A
HOH
157
7
HOH
HOH
838
A
HOH
158
7
HOH
HOH
839
A
HOH
159
7
HOH
HOH
840
A
HOH
160
7
HOH
HOH
841
A
HOH
161
7
HOH
HOH
842
A
HOH
162
7
HOH
HOH
843
A
HOH
163
7
HOH
HOH
844
A
HOH
164
7
HOH
HOH
845
A
HOH
165
7
HOH
HOH
846
A
HOH
166
7
HOH
HOH
847
A
HOH
167
7
HOH
HOH
848
A
HOH
168
7
HOH
HOH
849
A
HOH
169
7
HOH
HOH
850
A
HOH
170
7
HOH
HOH
851
A
HOH
171
7
HOH
HOH
852
A
HOH
173
7
HOH
HOH
853
A
HOH
174
7
HOH
HOH
854
A
HOH
175
7
HOH
HOH
855
A
HOH
176
7
HOH
HOH
856
A
HOH
179
7
HOH
HOH
857
A
HOH
180
7
HOH
HOH
858
A
HOH
181
7
HOH
HOH
859
A
HOH
182
7
HOH
HOH
860
A
HOH
183
7
HOH
HOH
861
A
HOH
184
7
HOH
HOH
862
A
HOH
185
7
HOH
HOH
863
A
HOH
186
7
HOH
HOH
864
A
HOH
187
7
HOH
HOH
865
A
HOH
188
7
HOH
HOH
866
A
HOH
190
7
HOH
HOH
867
A
HOH
191
7
HOH
HOH
868
A
HOH
192
7
HOH
HOH
869
A
HOH
193
7
HOH
HOH
870
A
HOH
194
7
HOH
HOH
871
A
HOH
195
7
HOH
HOH
872
A
HOH
196
7
HOH
HOH
873
A
HOH
197
7
HOH
HOH
874
A
HOH
198
7
HOH
HOH
875
A
HOH
199
7
HOH
HOH
876
A
HOH
200
7
HOH
HOH
877
A
HOH
201
7
HOH
HOH
878
A
HOH
202
7
HOH
HOH
879
A
HOH
203
7
HOH
HOH
880
A
HOH
204
7
HOH
HOH
881
A
HOH
205
7
HOH
HOH
882
A
HOH
206
7
HOH
HOH
883
A
HOH
207
7
HOH
HOH
884
A
HOH
208
7
HOH
HOH
885
A
HOH
210
7
HOH
HOH
886
A
HOH
214
7
HOH
HOH
887
A
HOH
215
7
HOH
HOH
888
A
HOH
216
7
HOH
HOH
889
A
HOH
217
7
HOH
HOH
890
A
HOH
218
7
HOH
HOH
891
A
HOH
219
7
HOH
HOH
892
A
HOH
220
7
HOH
HOH
893
A
HOH
221
7
HOH
HOH
894
A
HOH
222
7
HOH
HOH
895
A
HOH
223
7
HOH
HOH
896
A
HOH
225
7
HOH
HOH
897
A
HOH
227
7
HOH
HOH
898
A
HOH
228
7
HOH
HOH
899
A
HOH
229
7
HOH
HOH
900
A
HOH
230
7
HOH
HOH
901
A
HOH
231
7
HOH
HOH
902
A
HOH
232
7
HOH
HOH
903
A
HOH
233
7
HOH
HOH
904
A
HOH
234
7
HOH
HOH
905
A
HOH
237
7
HOH
HOH
906
A
HOH
239
7
HOH
HOH
907
A
HOH
240
7
HOH
HOH
908
A
HOH
241
7
HOH
HOH
909
A
HOH
243
7
HOH
HOH
910
A
HOH
244
7
HOH
HOH
911
A
HOH
245
7
HOH
HOH
912
A
HOH
246
7
HOH
HOH
913
A
HOH
247
7
HOH
HOH
914
A
HOH
248
7
HOH
HOH
915
A
HOH
250
7
HOH
HOH
916
A
HOH
253
7
HOH
HOH
917
A
HOH
254
7
HOH
HOH
918
A
HOH
255
7
HOH
HOH
919
A
HOH
256
7
HOH
HOH
920
A
HOH
257
7
HOH
HOH
921
A
HOH
258
7
HOH
HOH
922
A
HOH
259
7
HOH
HOH
923
A
HOH
260
7
HOH
HOH
924
A
HOH
261
7
HOH
HOH
925
A
HOH
262
7
HOH
HOH
926
A
HOH
263
7
HOH
HOH
927
A
HOH
264
7
HOH
HOH
928
A
HOH
265
7
HOH
HOH
929
A
HOH
267
7
HOH
HOH
930
A
HOH
268
7
HOH
HOH
931
A
HOH
269
7
HOH
HOH
932
A
HOH
271
7
HOH
HOH
933
A
HOH
273
7
HOH
HOH
934
A
HOH
274
7
HOH
HOH
935
A
HOH
275
7
HOH
HOH
936
A
HOH
276
7
HOH
HOH
937
A
HOH
277
7
HOH
HOH
938
A
HOH
279
7
HOH
HOH
939
A
HOH
280
7
HOH
HOH
940
A
HOH
281
7
HOH
HOH
941
A
HOH
282
7
HOH
HOH
942
A
HOH
283
7
HOH
HOH
943
A
HOH
284
7
HOH
HOH
944
A
HOH
285
7
HOH
HOH
945
A
HOH
286
7
HOH
HOH
946
A
HOH
287
7
HOH
HOH
947
A
HOH
288
7
HOH
HOH
948
A
HOH
290
7
HOH
HOH
949
A
HOH
291
7
HOH
HOH
950
A
HOH
292
7
HOH
HOH
951
A
HOH
293
7
HOH
HOH
952
A
HOH
294
7
HOH
HOH
953
A
HOH
295
7
HOH
HOH
954
A
HOH
297
7
HOH
HOH
955
A
HOH
298
7
HOH
HOH
956
A
HOH
299
7
HOH
HOH
957
A
HOH
300
7
HOH
HOH
958
A
HOH
301
7
HOH
HOH
959
A
HOH
302
7
HOH
HOH
960
A
HOH
303
7
HOH
HOH
961
A
HOH
304
7
HOH
HOH
962
A
HOH
306
7
HOH
HOH
963
A
HOH
307
7
HOH
HOH
964
A
HOH
308
7
HOH
HOH
965
A
HOH
309
7
HOH
HOH
966
A
HOH
4
7
HOH
HOH
701
B
HOH
7
7
HOH
HOH
702
B
HOH
8
7
HOH
HOH
703
B
HOH
10
7
HOH
HOH
704
B
HOH
17
7
HOH
HOH
705
B
HOH
20
7
HOH
HOH
706
B
HOH
32
7
HOH
HOH
707
B
HOH
35
7
HOH
HOH
708
B
HOH
42
7
HOH
HOH
709
B
HOH
43
7
HOH
HOH
710
B
HOH
47
7
HOH
HOH
711
B
HOH
55
7
HOH
HOH
712
B
HOH
56
7
HOH
HOH
713
B
HOH
57
7
HOH
HOH
714
B
HOH
67
7
HOH
HOH
715
B
HOH
82
7
HOH
HOH
716
B
HOH
89
7
HOH
HOH
717
B
HOH
122
7
HOH
HOH
718
B
HOH
139
7
HOH
HOH
719
B
HOH
177
7
HOH
HOH
720
B
HOH
178
7
HOH
HOH
721
B
HOH
189
7
HOH
HOH
722
B
HOH
212
7
HOH
HOH
723
B
HOH
213
7
HOH
HOH
724
B
HOH
226
7
HOH
HOH
725
B
HOH
235
7
HOH
HOH
726
B
HOH
238
7
HOH
HOH
727
B
HOH
242
7
HOH
HOH
728
B
HOH
266
7
HOH
HOH
729
B
HOH
270
7
HOH
HOH
730
B
HOH
278
7
HOH
HOH
731
B
HOH
296
7
HOH
HOH
732
B
HOH
310
7
HOH
HOH
733
B
HOH
311
7
HOH
HOH
734
B
n
1
230
A
n
2
231
A
ALA
232
n
3
HIS
232
A
MET
233
n
4
MET
233
A
ARG
234
n
5
ARG
234
A
LYS
235
n
6
LYS
235
A
LYS
236
n
7
LYS
236
A
ARG
237
n
8
ARG
237
A
LYS
238
n
9
LYS
238
A
ASP
239
n
10
ASP
239
A
ILE
240
n
11
ILE
240
A
ASN
241
n
12
ASN
241
A
THR
242
n
13
THR
242
A
ILE
243
n
14
ILE
243
A
GLU
244
n
15
GLU
244
A
ASP
245
n
16
ASP
245
A
ALA
246
n
17
ALA
246
A
VAL
247
n
18
VAL
247
A
LYS
248
n
19
LYS
248
A
LEU
249
n
20
LEU
249
A
LEU
250
n
21
LEU
250
A
GLN
251
n
22
GLN
251
A
GLU
252
n
23
GLU
252
A
CYS
253
n
24
CYS
253
A
LYS
254
n
25
LYS
254
A
LYS
255
n
26
LYS
255
A
ILE
256
n
27
ILE
256
A
ILE
257
n
28
ILE
257
A
VAL
258
n
29
VAL
258
A
LEU
259
n
30
LEU
259
A
THR
260
n
31
THR
260
A
GLY
261
n
32
GLY
261
A
ALA
262
n
33
ALA
262
A
GLY
263
n
34
GLY
263
A
VAL
264
n
35
VAL
264
A
SER
265
n
36
SER
265
A
VAL
266
n
37
VAL
266
A
SER
267
n
38
SER
267
A
CYS
268
n
39
CYS
268
A
GLY
269
n
40
GLY
269
A
ILE
270
n
41
ILE
270
A
PRO
271
n
42
PRO
271
A
ASP
272
n
43
ASP
272
A
PHE
273
n
44
PHE
273
A
ARG
274
n
45
ARG
274
A
SER
275
n
46
SER
275
A
ARG
276
n
47
ARG
276
A
ASP
277
n
48
ASP
277
A
GLY
278
n
49
GLY
278
A
ILE
279
n
50
ILE
279
A
TYR
280
n
51
TYR
280
A
ALA
281
n
52
ALA
281
A
ARG
282
n
53
ARG
282
A
LEU
283
n
54
LEU
283
A
ALA
284
n
55
ALA
284
A
VAL
285
n
56
VAL
285
A
ASP
286
n
57
ASP
286
A
PHE
287
n
58
PHE
287
A
PRO
288
n
59
PRO
288
A
ASP
289
n
60
ASP
289
A
LEU
290
n
61
LEU
290
A
PRO
291
n
62
PRO
291
A
ASP
292
n
63
ASP
292
A
PRO
293
n
64
PRO
293
A
GLN
294
n
65
GLN
294
A
ALA
295
n
66
ALA
295
A
MET
296
n
67
MET
296
A
PHE
297
n
68
PHE
297
A
ASP
298
n
69
ASP
298
A
ILE
299
n
70
ILE
299
A
GLU
300
n
71
GLU
300
A
TYR
301
n
72
TYR
301
A
PHE
302
n
73
PHE
302
A
ARG
303
n
74
ARG
303
A
LYS
304
n
75
LYS
304
A
ASP
305
n
76
ASP
305
A
PRO
306
n
77
PRO
306
A
ARG
307
n
78
ARG
307
A
PRO
308
n
79
PRO
308
A
PHE
309
n
80
PHE
309
A
PHE
310
n
81
PHE
310
A
LYS
311
n
82
LYS
311
A
PHE
312
n
83
PHE
312
A
ALA
313
n
84
ALA
313
A
LYS
314
n
85
LYS
314
A
GLU
315
n
86
GLU
315
A
ILE
316
n
87
ILE
316
A
TYR
317
n
88
TYR
317
A
PRO
318
n
89
PRO
318
A
GLY
319
n
90
GLY
319
A
GLN
320
n
91
GLN
320
A
PHE
321
n
92
PHE
321
A
GLN
322
n
93
GLN
322
A
PRO
323
n
94
PRO
323
A
SER
324
n
95
SER
324
A
LEU
325
n
96
LEU
325
A
CYS
326
n
97
CYS
326
A
HIS
327
n
98
HIS
327
A
LYS
328
n
99
LYS
328
A
PHE
329
n
100
PHE
329
A
ILE
330
n
101
ILE
330
A
ALA
331
n
102
ALA
331
A
LEU
332
n
103
LEU
332
A
SER
333
n
104
SER
333
A
ASP
334
n
105
ASP
334
A
LYS
335
n
106
LYS
335
A
GLU
336
n
107
GLU
336
A
GLY
337
n
108
GLY
337
A
LYS
338
n
109
LYS
338
A
LEU
339
n
110
LEU
339
A
LEU
340
n
111
LEU
340
A
ARG
341
n
112
ARG
341
A
ASN
342
n
113
ASN
342
A
TYR
343
n
114
TYR
343
A
THR
344
n
115
THR
344
A
GLN
345
n
116
GLN
345
A
ASN
346
n
117
ASN
346
A
ILE
347
n
118
ILE
347
A
ASP
348
n
119
ASP
348
A
THR
349
n
120
THR
349
A
LEU
350
n
121
LEU
350
A
GLU
351
n
122
GLU
351
A
GLN
352
n
123
GLN
352
A
VAL
353
n
124
VAL
353
A
ALA
354
n
125
ALA
354
A
GLY
355
n
126
GLY
355
A
ILE
356
n
127
ILE
356
A
GLN
357
n
128
GLN
357
A
ARG
358
n
129
ARG
358
A
ILE
359
n
130
ILE
359
A
ILE
360
n
131
ILE
360
A
GLN
361
n
132
GLN
361
A
CYS
362
n
133
CYS
362
A
HIS
363
n
134
HIS
363
A
GLY
364
n
135
GLY
364
A
SER
365
n
136
SER
365
A
PHE
366
n
137
PHE
366
A
ALA
367
n
138
ALA
367
A
THR
368
n
139
THR
368
A
ALA
369
n
140
ALA
369
A
SER
370
n
141
SER
370
A
CYS
371
n
142
CYS
371
A
LEU
372
n
143
LEU
372
A
ILE
373
n
144
ILE
373
A
CYS
374
n
145
CYS
374
A
LYS
375
n
146
LYS
375
A
TYR
376
n
147
TYR
376
A
LYS
377
n
148
LYS
377
A
VAL
378
n
149
VAL
378
A
ASP
379
n
150
ASP
379
A
CYS
380
n
151
CYS
380
A
GLU
381
n
152
GLU
381
A
ALA
382
n
153
ALA
382
A
VAL
383
n
154
VAL
383
A
ARG
384
n
155
ARG
384
A
GLY
385
n
156
GLY
385
A
ASP
386
n
157
ASP
386
A
ILE
387
n
158
ILE
387
A
PHE
388
n
159
PHE
388
A
ASN
389
n
160
ASN
389
A
GLN
390
n
161
GLN
390
A
VAL
391
n
162
VAL
391
A
VAL
392
n
163
VAL
392
A
PRO
393
n
164
PRO
393
A
ARG
394
n
165
ARG
394
A
CYS
395
n
166
CYS
395
A
PRO
396
n
167
PRO
396
A
ARG
397
n
168
ARG
397
A
CYS
398
n
169
CYS
398
A
PRO
399
n
170
PRO
399
A
ALA
400
n
171
ALA
400
A
ASP
401
n
172
ASP
401
A
GLU
402
n
173
GLU
402
A
PRO
403
n
174
PRO
403
A
LEU
404
n
175
LEU
404
A
ALA
405
n
176
ALA
405
A
ILE
406
n
177
ILE
406
A
MET
407
n
178
MET
407
A
LYS
408
n
179
LYS
408
A
PRO
409
n
180
PRO
409
A
GLU
410
n
181
GLU
410
A
ILE
411
n
182
ILE
411
A
VAL
412
n
183
VAL
412
A
PHE
413
n
184
PHE
413
A
PHE
414
n
185
PHE
414
A
GLY
415
n
186
GLY
415
A
GLU
416
n
187
GLU
416
A
ASN
417
n
188
ASN
417
A
LEU
418
n
189
LEU
418
A
PRO
419
n
190
PRO
419
A
GLU
420
n
191
GLU
420
A
GLN
421
n
192
GLN
421
A
PHE
422
n
193
PHE
422
A
HIS
423
n
194
HIS
423
A
ARG
424
n
195
ARG
424
A
ALA
425
n
196
ALA
425
A
MET
426
n
197
MET
426
A
LYS
427
n
198
LYS
427
A
TYR
428
n
199
TYR
428
A
ASP
429
n
200
ASP
429
A
LYS
430
n
201
LYS
430
A
ASP
431
n
202
ASP
431
A
GLU
432
n
203
GLU
432
A
VAL
433
n
204
VAL
433
A
ASP
434
n
205
ASP
434
A
LEU
435
n
206
LEU
435
A
LEU
436
n
207
LEU
436
A
ILE
437
n
208
ILE
437
A
VAL
438
n
209
VAL
438
A
ILE
439
n
210
ILE
439
A
GLY
440
n
211
GLY
440
A
SER
441
n
212
SER
441
A
SER
442
n
213
SER
442
A
LEU
443
n
214
LEU
443
A
LYS
444
n
215
LYS
444
A
VAL
445
n
216
VAL
445
A
ARG
446
n
217
ARG
446
A
PRO
447
n
218
PRO
447
A
VAL
448
n
219
VAL
448
A
ALA
449
n
220
ALA
449
A
LEU
450
n
221
LEU
450
A
ILE
451
n
222
ILE
451
A
PRO
452
n
223
PRO
452
A
SER
453
n
224
SER
453
A
SER
454
n
225
SER
454
A
ILE
455
n
226
ILE
455
A
PRO
456
n
227
PRO
456
A
HIS
457
n
228
HIS
457
A
GLU
458
n
229
GLU
458
A
VAL
459
n
230
VAL
459
A
PRO
460
n
231
PRO
460
A
GLN
461
n
232
GLN
461
A
ILE
462
n
233
ILE
462
A
LEU
463
n
234
LEU
463
A
ILE
464
n
235
ILE
464
A
ASN
465
n
236
ASN
465
A
ARG
466
n
237
ARG
466
A
GLU
467
n
238
GLU
467
A
PRO
468
n
239
PRO
468
A
LEU
469
n
240
LEU
469
A
PRO
470
n
241
PRO
470
A
HIS
471
n
242
HIS
471
A
LEU
472
n
243
LEU
472
A
HIS
473
n
244
HIS
473
A
PHE
474
n
245
PHE
474
A
ASP
475
n
246
ASP
475
A
VAL
476
n
247
VAL
476
A
GLU
477
n
248
GLU
477
A
LEU
478
n
249
LEU
478
A
LEU
479
n
250
LEU
479
A
GLY
480
n
251
GLY
480
A
ASP
481
n
252
ASP
481
A
CYS
482
n
253
CYS
482
A
ASP
483
n
254
ASP
483
A
VAL
484
n
255
VAL
484
A
ILE
485
n
256
ILE
485
A
ILE
486
n
257
ILE
486
A
ASN
487
n
258
ASN
487
A
GLU
488
n
259
GLU
488
A
LEU
489
n
260
LEU
489
A
CYS
490
n
261
CYS
490
A
HIS
491
n
262
HIS
491
A
ARG
492
n
263
ARG
492
A
LEU
493
n
264
LEU
493
A
GLY
494
n
265
GLY
494
A
GLY
495
n
266
GLY
495
A
GLU
496
n
267
GLU
496
A
TYR
497
n
268
TYR
497
A
ALA
498
n
269
ALA
498
A
LYS
499
n
270
LYS
499
A
LEU
500
n
271
LEU
500
A
CYS
501
n
272
CYS
501
A
CYS
502
n
273
CYS
502
A
ASN
503
n
274
ASN
503
A
PRO
504
n
275
PRO
504
A
VAL
505
n
276
VAL
505
A
LYS
506
n
277
LYS
506
A
LEU
507
n
278
LEU
507
A
SER
508
n
279
SER
508
A
GLU
509
n
280
GLU
509
A
ILE
510
n
281
ILE
510
A
GLY
-6
n
1
GLY
-6
B
PRO
-5
n
2
PRO
-5
B
HIS
-4
n
3
HIS
-4
B
MET
-3
n
4
MET
-3
B
GLY
-2
n
5
GLY
-2
B
SER
-1
n
6
SER
-1
B
GLN
641
n
7
GLN
641
B
TYR
642
n
8
TYR
642
B
LEU
643
n
9
LEU
643
B
PHE
644
n
10
PHE
644
B
LEU
645
n
11
LEU
645
B
PRO
646
n
12
PRO
646
B
PRO
647
n
13
PRO
647
B
ASN
648
n
14
ASN
648
B
ARG
649
n
15
ARG
649
B
TYR
650
n
16
TYR
650
B
ILE
651
n
17
ILE
651
B
PHE
652
n
18
PHE
652
B
HIS
653
n
19
HIS
653
B
GLY
654
n
20
GLY
654
B
ALA
655
n
21
ALA
655
B
GLU
656
n
22
GLU
656
B
VAL
657
n
23
VAL
657
B
TYR
658
n
24
TYR
658
B
SER
659
n
25
SER
659
B
ASP
660
n
26
ASP
660
B
n
27
661
B
n
28
662
B
n
29
663
B
n
30
664
B
software_defined_assembly
PISA
2
dimeric
2840
-16
15470
A
CYS
371
A
SG
CYS
142
1_555
A
ZN
601
C
ZN
ZN
1_555
A
CYS
374
A
SG
CYS
145
1_555
108.4
A
CYS
371
A
SG
CYS
142
1_555
A
ZN
601
C
ZN
ZN
1_555
A
CYS
395
A
SG
CYS
166
1_555
104.3
A
CYS
374
A
SG
CYS
145
1_555
A
ZN
601
C
ZN
ZN
1_555
A
CYS
395
A
SG
CYS
166
1_555
105.2
A
CYS
371
A
SG
CYS
142
1_555
A
ZN
601
C
ZN
ZN
1_555
A
CYS
398
A
SG
CYS
169
1_555
113.3
A
CYS
374
A
SG
CYS
145
1_555
A
ZN
601
C
ZN
ZN
1_555
A
CYS
398
A
SG
CYS
169
1_555
105.6
A
CYS
395
A
SG
CYS
166
1_555
A
ZN
601
C
ZN
ZN
1_555
A
CYS
398
A
SG
CYS
169
1_555
119.4
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
ILE
360
A
O
ILE
131
A
N
THR
344
A
N
THR
115
A
O
ARG
341
A
O
ARG
112
A
N
VAL
258
A
N
VAL
29
A
N
ILE
257
A
N
ILE
28
A
O
LEU
435
A
O
LEU
206
A
N
VAL
438
A
N
VAL
209
A
O
ILE
464
A
O
ILE
235
A
N
LEU
463
A
N
LEU
234
A
O
LEU
478
A
O
LEU
249
A
N
LEU
479
A
N
LEU
250
B
O
TYR
650
B
O
TYR
16
B
O
ARG
649
B
O
ARG
15
B
N
LEU
645
B
N
LEU
11
A
O
VAL
378
A
O
VAL
149
A
N
ALA
369
A
N
ALA
140
A
N
THR
368
A
N
THR
139
A
O
GLU
410
A
O
GLU
181
1
A
CG
HIS
232
A
CG
HIS
3
1
Y
1
A
ND1
HIS
232
A
ND1
HIS
3
1
Y
1
A
CD2
HIS
232
A
CD2
HIS
3
1
Y
1
A
CE1
HIS
232
A
CE1
HIS
3
1
Y
1
A
NE2
HIS
232
A
NE2
HIS
3
1
Y
1
A
GLY
230
A
GLY
1
1
Y
1
A
PRO
231
A
PRO
2
1
Y
1
B
SER
661
B
SER
27
1
Y
1
B
GLU
662
B
GLU
28
1
Y
1
B
ASP
663
B
ASP
29
1
Y
1
B
VAL
664
B
VAL
30
1
Y
1
A
ASN
241
-141.75
-43.42
1
A
ASP
272
-76.66
-169.99
1
A
ASP
305
-160.41
104.33
1
B
ASN
648
-149.64
15.06
122.320
43.6853
20.750
0.1894
0.1684
0.1695
1.849
46.357
1924
41937
4.76
99.94
1.000
0.350
0.2200
1
1.350
SAD
20.2400
0.9000
1.1100
ML
FLAT BULK SOLVENT MODEL
1.849
46.357
300
2773
47
0
2426
0.009
2596
1.227
3523
0.068
383
0.006
458
13.770
1006
0.3522
0.2941
1.8728
138
2817
2955
27
100.0
0.2644
0.2643
1.8974
149
2893
3042
27
100.0
0.3075
0.2659
1.9234
142
2796
2938
27
100.0
0.2980
0.2400
1.9509
140
2787
2927
27
100.0
0.2162
0.2319
1.9800
148
2894
3042
27
100.0
0.2523
0.2129
2.0110
140
2784
2924
27
100.0
0.2790
0.2062
2.0440
146
2813
2959
27
100.0
0.2497
0.2103
2.0792
135
2859
2994
27
100.0
0.2176
0.2052
2.1170
136
2843
2979
27
100.0
0.2242
0.1922
2.1577
146
2806
2952
27
100.0
0.1781
0.1803
2.2018
142
2859
3001
27
100.0
0.1950
0.1871
2.2496
144
2787
2931
27
100.0
0.1847
0.1745
2.3020
139
2805
2944
27
100.0
0.2197
0.1711
2.3595
144
2894
3038
27
100.0
0.2030
0.1599
2.4233
140
2805
2945
27
100.0
0.2154
0.1673
2.4946
138
2855
2993
27
100.0
0.1753
0.1595
2.5751
148
2834
2982
27
100.0
0.1986
0.1546
2.6672
137
2802
2939
27
100.0
0.1957
0.1656
2.7740
148
2839
2987
27
100.0
0.2029
0.1683
2.9002
138
2829
2967
27
100.0
0.2111
0.1786
3.0531
132
2848
2980
27
100.0
0.2164
0.1802
3.2443
136
2852
2988
27
100.0
0.1996
0.1688
3.4947
146
2819
2965
27
100.0
0.1798
0.1611
3.8462
150
2841
2991
27
100.0
0.1454
0.1332
4.4024
140
2848
2988
27
100.0
0.1362
0.1342
5.5451
136
2820
2956
27
100.0
0.1829
0.1756
46.3715
146
2829
2975
27
100.0
34.230
1.849
50.0
4KXQ
41954
1
1.849
1
refinement
Paul D. Adams
PDAdams@lbl.gov
C++
http://www.phenix-online.org/
PHENIX
package
1.8.2_1309
data extraction
PDB
deposit@deposit.rcsb.org
April 22, 2011
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.11
data reduction
HKL-2000
data scaling
HKL-2000
phasing
SHELX
phasing
SHARP
Structure of NAD-dependent protein deacetylase sirtuin-1 (closed state, 1.85 A)
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
6
N
N
7
N
N
7
N
N
A
THR
242
A
THR
13
HELX_P
A
CYS
253
A
CYS
24
1
1
12
A
ALA
262
A
ALA
33
HELX_P
A
GLY
269
A
GLY
40
5
2
8
A
GLY
278
A
GLY
49
HELX_P
A
PHE
287
A
PHE
58
1
3
10
A
ASP
292
A
ASP
63
HELX_P
A
PHE
297
A
PHE
68
5
4
6
A
ASP
298
A
ASP
69
HELX_P
A
ASP
305
A
ASP
76
1
5
8
A
PRO
306
A
PRO
77
HELX_P
A
ALA
313
A
ALA
84
1
6
8
A
LYS
314
A
LYS
85
HELX_P
A
TYR
317
A
TYR
88
5
7
4
A
SER
324
A
SER
95
HELX_P
A
GLU
336
A
GLU
107
1
8
13
A
THR
349
A
THR
120
HELX_P
A
GLY
355
A
GLY
126
1
9
7
A
VAL
383
A
VAL
154
HELX_P
A
ASN
389
A
ASN
160
1
10
7
A
PRO
419
A
PRO
190
HELX_P
A
LYS
430
A
LYS
201
1
11
12
A
PRO
447
A
PRO
218
HELX_P
A
ALA
449
A
ALA
220
5
12
3
A
LEU
450
A
LEU
221
HELX_P
A
ILE
455
A
ILE
226
1
13
6
A
ASP
481
A
ASP
252
HELX_P
A
GLY
494
A
GLY
265
1
14
14
A
GLY
494
A
GLY
265
HELX_P
A
CYS
501
A
CYS
272
1
15
8
B
ALA
655
B
ALA
21
HELX_P
B
SER
659
B
SER
25
5
16
5
metalc
2.345
A
CYS
371
A
SG
CYS
142
1_555
A
ZN
601
C
ZN
ZN
1_555
metalc
2.397
A
CYS
374
A
SG
CYS
145
1_555
A
ZN
601
C
ZN
ZN
1_555
metalc
2.351
A
CYS
395
A
SG
CYS
166
1_555
A
ZN
601
C
ZN
ZN
1_555
metalc
2.320
A
CYS
398
A
SG
CYS
169
1_555
A
ZN
601
C
ZN
ZN
1_555
HYDROLASE
deacetylase, HYDROLASE
A
ARG
446
A
ARG
217
1
A
PRO
447
A
PRO
218
-0.89
A
ASN
503
A
ASN
274
1
A
PRO
504
A
PRO
275
0.40
B
PRO
646
B
PRO
12
1
B
PRO
647
B
PRO
13
8.67
SIR1_HUMAN
UNP
1
234
Q96EB6
RKKRKDINTIEDAVKLLQECKKIIVLTGAGVSVSCGIPDFRSRDGIYARLAVDFPDLPDPQAMFDIEYFRKDPRPFFKFA
KEIYPGQFQPSLCHKFIALSDKEGKLLRNYTQNIDTLEQVAGIQRIIQCHGSFATASCLICKYKVDCEAVRGDIFNQVVP
RCPRCPADEPLAIMKPEIVFFGENLPEQFHRAMKYDKDEVDLLIVIGSSLKVRPVALIPSSIPHEVPQILINREPLPHLH
FDVELLGDCDVIINELCHRLGGEYAKLCCNPVKLSEI
SIR1_HUMAN
UNP
2
641
Q96EB6
QYLFLPPNRYIFHGAEVYSDSED
234
510
4KXQ
234
510
Q96EB6
A
1
5
281
641
663
4KXQ
641
663
Q96EB6
B
2
7
29
1
expression tag
GLY
230
4KXQ
A
Q96EB6
UNP
1
1
expression tag
PRO
231
4KXQ
A
Q96EB6
UNP
2
1
expression tag
HIS
232
4KXQ
A
Q96EB6
UNP
3
1
expression tag
MET
233
4KXQ
A
Q96EB6
UNP
4
2
expression tag
GLY
-6
4KXQ
B
Q96EB6
UNP
1
2
expression tag
PRO
-5
4KXQ
B
Q96EB6
UNP
2
2
expression tag
HIS
-4
4KXQ
B
Q96EB6
UNP
3
2
expression tag
MET
-3
4KXQ
B
Q96EB6
UNP
4
2
expression tag
GLY
-2
4KXQ
B
Q96EB6
UNP
5
2
expression tag
SER
-1
4KXQ
B
Q96EB6
UNP
6
2
expression tag
VAL
664
4KXQ
B
Q96EB6
UNP
30
8
3
parallel
parallel
parallel
parallel
parallel
parallel
anti-parallel
anti-parallel
anti-parallel
A
ILE
359
A
ILE
130
A
GLN
361
A
GLN
132
A
LEU
339
A
LEU
110
A
THR
344
A
THR
115
A
ILE
256
A
ILE
27
A
THR
260
A
THR
31
A
LEU
435
A
LEU
206
A
ILE
439
A
ILE
210
A
GLN
461
A
GLN
232
A
ASN
465
A
ASN
236
A
VAL
476
A
VAL
247
A
LEU
479
A
LEU
250
B
ARG
649
B
ARG
15
B
ILE
651
B
ILE
17
B
LEU
643
B
LEU
9
B
LEU
645
B
LEU
11
A
LYS
377
A
LYS
148
A
ASP
379
A
ASP
150
A
GLY
364
A
GLY
135
A
CYS
371
A
CYS
142
A
MET
407
A
MET
178
A
ILE
411
A
ILE
182
BINDING SITE FOR RESIDUE ZN A 601
A
ZN
601
Software
4
BINDING SITE FOR RESIDUE APR A 602
A
APR
602
Software
27
BINDING SITE FOR RESIDUE BME A 603
A
BME
603
Software
7
BINDING SITE FOR RESIDUE GOL A 604
A
GOL
604
Software
10
A
CYS
371
A
CYS
142
4
1_555
A
CYS
374
A
CYS
145
4
1_555
A
CYS
395
A
CYS
166
4
1_555
A
CYS
398
A
CYS
169
4
1_555
A
GLY
261
A
GLY
32
27
1_555
A
ALA
262
A
ALA
33
27
1_555
A
GLY
263
A
GLY
34
27
1_555
A
VAL
266
A
VAL
37
27
1_555
A
ASP
272
A
ASP
43
27
1_555
A
PHE
273
A
PHE
44
27
1_555
A
ARG
274
A
ARG
45
27
1_555
A
TYR
280
A
TYR
51
27
1_555
A
GLN
345
A
GLN
116
27
1_555
A
HIS
363
A
HIS
134
27
1_555
A
PHE
414
A
PHE
185
27
1_555
A
GLY
440
A
GLY
211
27
1_555
A
SER
441
A
SER
212
27
1_555
A
SER
442
A
SER
213
27
1_555
A
VAL
445
A
VAL
216
27
1_555
A
ASN
465
A
ASN
236
27
1_555
A
ARG
466
A
ARG
237
27
1_555
A
GLU
467
A
GLU
238
27
1_555
A
GLY
480
A
GLY
251
27
1_555
A
ASP
481
A
ASP
252
27
1_555
A
CYS
482
A
CYS
253
27
1_555
A
HOH
712
G
HOH
27
1_555
A
HOH
727
G
HOH
27
1_555
A
HOH
786
G
HOH
27
1_555
A
HOH
802
G
HOH
27
1_555
A
HOH
835
G
HOH
27
1_555
A
HOH
836
G
HOH
27
1_555
A
LYS
254
A
LYS
25
7
1_555
A
LYS
255
A
LYS
26
7
1_555
A
GLY
337
A
GLY
108
7
1_555
A
LEU
339
A
LEU
110
7
1_555
A
LEU
340
A
LEU
111
7
1_555
A
HOH
744
G
HOH
7
1_555
A
HOH
926
G
HOH
7
2_544
A
ILE
270
A
ILE
41
10
1_555
A
ILE
279
A
ILE
50
10
1_555
A
ILE
316
A
ILE
87
10
1_555
A
ASN
346
A
ASN
117
10
1_555
A
ILE
347
A
ILE
118
10
1_555
A
ASP
348
A
ASP
119
10
1_555
A
HOH
733
G
HOH
10
1_555
A
HOH
796
G
HOH
10
1_555
A
HOH
860
G
HOH
10
1_555
A
HOH
866
G
HOH
10
1_555
154
P 32 2 1