0.013383
0.000000
0.000000
-0.000000
0.013070
0.000000
0.000000
-0.000000
0.007757
0.000000
0.000000
0.000000
Li, F.
Zhang, Q.
Li, A.
Tian, X.
Cai, Q.
Wang, W.
Wang, Y.
Chen, H.
Xing, Y.
Wu, Q.
Lin, T.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.000
90.000
90.000
74.723
76.512
128.918
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C3 H8 O3
92.094
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
C18 H28 O3
292.413
1-(3,5-dimethoxyphenyl)decan-1-one
non-polymer
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
C
N
138
N
O
N
139
N
C
N
140
N
O
N
141
N
C
N
142
N
O
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
N
N
152
S
C
N
153
N
C
N
154
N
O
N
155
N
C
Y
156
N
C
Y
157
N
N
Y
158
N
C
Y
159
N
C
Y
160
N
N
N
161
N
O
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
O
N
173
N
H
N
174
N
H
N
175
N
N
N
176
S
C
N
177
N
C
N
178
N
O
N
179
S
C
N
180
N
C
N
181
N
C
N
182
N
C
N
183
N
O
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
N
N
198
S
C
N
199
N
C
N
200
N
O
N
201
N
C
N
202
N
C
N
203
N
C
N
204
N
C
N
205
N
O
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
N
N
220
S
C
N
221
N
C
N
222
N
O
N
223
N
C
N
224
N
C
N
225
N
C
N
226
N
C
N
227
N
N
N
228
N
O
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
N
N
245
S
C
N
246
N
C
N
247
N
O
N
248
N
C
N
249
N
C
N
250
N
S
N
251
N
C
N
252
N
O
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
N
N
265
S
C
N
266
N
C
N
267
N
O
N
268
N
C
Y
269
N
C
Y
270
N
C
Y
271
N
C
Y
272
N
C
Y
273
N
C
Y
274
N
C
N
275
N
O
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
N
N
288
S
C
N
289
N
C
N
290
N
O
N
291
N
C
N
292
N
C
N
293
N
C
N
294
N
O
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
N
N
305
S
C
N
306
N
C
N
307
N
O
N
308
N
C
N
309
N
O
N
310
N
O
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
N
N
319
S
C
N
320
N
C
N
321
N
O
N
322
R
C
N
323
N
O
N
324
N
C
N
325
N
O
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
N
N
336
S
C
N
337
N
C
N
338
N
O
N
339
N
C
Y
340
N
C
Y
341
N
C
Y
342
N
C
Y
343
N
N
Y
344
N
C
Y
345
N
C
Y
346
N
C
Y
347
N
C
Y
348
N
C
N
349
N
O
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
N
N
363
S
C
N
364
N
C
N
365
N
O
N
366
N
C
Y
367
N
C
Y
368
N
C
Y
369
N
C
Y
370
N
C
Y
371
N
C
Y
372
N
C
N
373
N
O
N
374
N
O
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
N
N
387
S
C
N
388
N
C
N
389
N
O
N
390
N
C
N
391
N
C
N
392
N
C
N
393
N
O
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
O
N
406
N
C
Y
407
N
C
Y
408
N
C
Y
409
N
C
N
410
N
O
N
411
N
C
Y
412
N
C
Y
413
N
C
N
414
N
O
N
415
N
C
Y
416
N
C
N
417
N
C
N
418
N
C
N
419
N
C
N
420
N
C
N
421
N
C
N
422
N
C
N
423
N
C
N
424
N
C
N
425
N
C
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
H
N
450
N
H
N
451
N
H
N
452
N
H
N
453
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
doub
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
Y
153
N
sing
Y
154
N
doub
Y
155
N
doub
N
156
N
sing
Y
157
N
sing
N
158
N
sing
Y
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
doub
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
doub
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
doub
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
doub
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
doub
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
Y
261
N
doub
Y
262
N
sing
Y
263
N
sing
N
264
N
sing
Y
265
N
doub
N
266
N
sing
Y
267
N
doub
N
268
N
sing
Y
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
doub
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
doub
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
doub
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
doub
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
Y
330
N
doub
Y
331
N
sing
Y
332
N
sing
N
333
N
sing
Y
334
N
doub
Y
335
N
sing
Y
336
N
sing
N
337
N
sing
Y
338
N
sing
Y
339
N
doub
N
340
N
sing
Y
341
N
doub
N
342
N
sing
Y
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
doub
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
Y
358
N
doub
Y
359
N
sing
Y
360
N
sing
N
361
N
sing
Y
362
N
doub
N
363
N
sing
Y
364
N
doub
N
365
N
sing
Y
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
doub
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
Y
397
N
doub
Y
398
N
sing
Y
399
N
sing
Y
400
N
doub
N
401
N
sing
N
402
N
sing
N
403
N
sing
Y
404
N
doub
Y
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
doub
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
US
Nat.Chem.Biol.
1552-4469
10
133
140
10.1038/nchembio.1406
24316735
Orphan nuclear receptor TR3 acts in autophagic cell death via mitochondrial signaling pathway.
2014
10.2210/pdb4kzi/pdb
pdb_00004kzi
100
1
mirrors
CCD
2013-04-27
ADSC QUANTUM 315r
Ni FILTER
SINGLE WAVELENGTH
M
x-ray
1
0.98
1.0
BL17U
SSRF
0.98
SYNCHROTRON
SSRF BEAMLINE BL17U
28745.305
Nuclear receptor subfamily 4 group A member 1
ligand binding domain, UNP residues 351-598
2
man
polymer
92.094
GLYCEROL
3
syn
non-polymer
292.413
1-(3,5-dimethoxyphenyl)decan-1-one
1
syn
non-polymer
18.015
water
92
nat
water
Early response protein NAK1, Nuclear hormone receptor NUR/77, Nur77, Orphan nuclear receptor HMR, Orphan nuclear receptor TR3, ST-59, Testicular receptor 3
no
no
MSKPKQPPDASPANLLTSLVRAHLDSGPSTAKLDYSKFQELVLPHFGKEDAGDVQQFYDLLSGSLEVIRKWAEKIPGFAE
LSPADQDLLLESAFLELFILRLAYRSKPGEGKLIFCSGLVLHRLQCARGFGDWIDSILAFSRSLHSLLVDVPAFACLSAL
VLITDRHGLQEPRRVEELQNRIASCLKEHVAAVAGEPQPASCLSRLLGKLPELRTLCTQGLQRIFYLKLEDLVPPPPIID
KIFMDTLPFLEHHHHHH
MSKPKQPPDASPANLLTSLVRAHLDSGPSTAKLDYSKFQELVLPHFGKEDAGDVQQFYDLLSGSLEVIRKWAEKIPGFAE
LSPADQDLLLESAFLELFILRLAYRSKPGEGKLIFCSGLVLHRLQCARGFGDWIDSILAFSRSLHSLLVDVPAFACLSAL
VLITDRHGLQEPRRVEELQNRIASCLKEHVAAVAGEPQPASCLSRLLGKLPELRTLCTQGLQRIFYLKLEDLVPPPPIID
KIFMDTLPFLEHHHHHH
B,A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
sample
GFRP1, HMR, NAK1, NR4A1
9606
Homo sapiens
562
Escherichia coli
BL21(DE3)
plasmid
pET22b
1
3.21
61.62
0.391
VAPOR DIFFUSION
4.2
PEG 4000, Sodium citrate, Glycerol, pH 4.2, vapor diffusion, temperature 277K
277
software
citation
citation_author
struct_ref_seq_dif
chem_comp_atom
chem_comp_bond
database_2
struct_site
repository
Initial release
Refinement description
Database references
Data collection
Database references
Derived calculations
1
0
2013-12-18
1
1
2017-11-15
1
2
2019-12-25
1
3
2024-03-20
_citation.journal_abbrev
_citation.journal_id_ISSN
_citation.journal_volume
_citation.page_first
_citation.page_last
_citation.pdbx_database_id_PubMed
_citation.title
_citation.year
_citation_author.name
_struct_ref_seq_dif.details
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
PDBJ
2013-05-30
REL
REL
GOL
GLYCEROL
ZJ0
1-(3,5-dimethoxyphenyl)decan-1-one
HOH
water
GOL
632
2
GOL
GOL
701
B
GOL
632
2
GOL
GOL
701
A
GOL
633
2
GOL
GOL
702
A
ZJ0
1
3
ZJ0
ZJ0
703
A
HOH
2
4
HOH
HOH
801
B
HOH
3
4
HOH
HOH
802
B
HOH
9
4
HOH
HOH
803
B
HOH
10
4
HOH
HOH
804
B
HOH
11
4
HOH
HOH
805
B
HOH
12
4
HOH
HOH
806
B
HOH
13
4
HOH
HOH
807
B
HOH
14
4
HOH
HOH
808
B
HOH
23
4
HOH
HOH
809
B
HOH
24
4
HOH
HOH
810
B
HOH
27
4
HOH
HOH
811
B
HOH
29
4
HOH
HOH
812
B
HOH
34
4
HOH
HOH
813
B
HOH
38
4
HOH
HOH
814
B
HOH
42
4
HOH
HOH
815
B
HOH
44
4
HOH
HOH
816
B
HOH
45
4
HOH
HOH
817
B
HOH
46
4
HOH
HOH
818
B
HOH
47
4
HOH
HOH
819
B
HOH
52
4
HOH
HOH
820
B
HOH
53
4
HOH
HOH
821
B
HOH
57
4
HOH
HOH
822
B
HOH
59
4
HOH
HOH
823
B
HOH
60
4
HOH
HOH
824
B
HOH
61
4
HOH
HOH
825
B
HOH
62
4
HOH
HOH
826
B
HOH
64
4
HOH
HOH
827
B
HOH
65
4
HOH
HOH
828
B
HOH
67
4
HOH
HOH
829
B
HOH
70
4
HOH
HOH
830
B
HOH
72
4
HOH
HOH
831
B
HOH
80
4
HOH
HOH
832
B
HOH
84
4
HOH
HOH
833
B
HOH
85
4
HOH
HOH
834
B
HOH
90
4
HOH
HOH
835
B
HOH
91
4
HOH
HOH
836
B
HOH
92
4
HOH
HOH
837
B
HOH
93
4
HOH
HOH
838
B
HOH
1
4
HOH
HOH
801
A
HOH
4
4
HOH
HOH
802
A
HOH
5
4
HOH
HOH
803
A
HOH
6
4
HOH
HOH
804
A
HOH
7
4
HOH
HOH
805
A
HOH
8
4
HOH
HOH
806
A
HOH
15
4
HOH
HOH
807
A
HOH
16
4
HOH
HOH
808
A
HOH
17
4
HOH
HOH
809
A
HOH
18
4
HOH
HOH
810
A
HOH
19
4
HOH
HOH
811
A
HOH
20
4
HOH
HOH
812
A
HOH
21
4
HOH
HOH
813
A
HOH
22
4
HOH
HOH
814
A
HOH
25
4
HOH
HOH
815
A
HOH
26
4
HOH
HOH
816
A
HOH
28
4
HOH
HOH
817
A
HOH
30
4
HOH
HOH
818
A
HOH
31
4
HOH
HOH
819
A
HOH
32
4
HOH
HOH
820
A
HOH
33
4
HOH
HOH
821
A
HOH
35
4
HOH
HOH
822
A
HOH
36
4
HOH
HOH
823
A
HOH
37
4
HOH
HOH
824
A
HOH
39
4
HOH
HOH
825
A
HOH
40
4
HOH
HOH
826
A
HOH
41
4
HOH
HOH
827
A
HOH
43
4
HOH
HOH
828
A
HOH
48
4
HOH
HOH
829
A
HOH
49
4
HOH
HOH
830
A
HOH
50
4
HOH
HOH
831
A
HOH
51
4
HOH
HOH
832
A
HOH
54
4
HOH
HOH
833
A
HOH
55
4
HOH
HOH
834
A
HOH
56
4
HOH
HOH
835
A
HOH
58
4
HOH
HOH
836
A
HOH
63
4
HOH
HOH
837
A
HOH
66
4
HOH
HOH
838
A
HOH
69
4
HOH
HOH
839
A
HOH
71
4
HOH
HOH
840
A
HOH
73
4
HOH
HOH
841
A
HOH
74
4
HOH
HOH
842
A
HOH
75
4
HOH
HOH
843
A
HOH
76
4
HOH
HOH
844
A
HOH
77
4
HOH
HOH
845
A
HOH
78
4
HOH
HOH
846
A
HOH
79
4
HOH
HOH
847
A
HOH
81
4
HOH
HOH
848
A
HOH
82
4
HOH
HOH
849
A
HOH
83
4
HOH
HOH
850
A
HOH
86
4
HOH
HOH
851
A
HOH
87
4
HOH
HOH
852
A
HOH
88
4
HOH
HOH
853
A
HOH
89
4
HOH
HOH
854
A
n
1
350
B
n
2
351
B
n
3
352
B
n
4
353
B
n
5
354
B
n
6
355
B
n
7
356
B
n
8
357
B
n
9
358
B
n
10
359
B
n
11
360
B
PRO
361
n
12
PRO
361
B
ALA
362
n
13
ALA
362
B
ASN
363
n
14
ASN
363
B
LEU
364
n
15
LEU
364
B
LEU
365
n
16
LEU
365
B
THR
366
n
17
THR
366
B
SER
367
n
18
SER
367
B
LEU
368
n
19
LEU
368
B
VAL
369
n
20
VAL
369
B
ARG
370
n
21
ARG
370
B
ALA
371
n
22
ALA
371
B
HIS
372
n
23
HIS
372
B
LEU
373
n
24
LEU
373
B
ASP
374
n
25
ASP
374
B
SER
375
n
26
SER
375
B
GLY
376
n
27
GLY
376
B
PRO
377
n
28
PRO
377
B
SER
378
n
29
SER
378
B
THR
379
n
30
THR
379
B
ALA
380
n
31
ALA
380
B
LYS
381
n
32
LYS
381
B
LEU
382
n
33
LEU
382
B
ASP
383
n
34
ASP
383
B
TYR
384
n
35
TYR
384
B
SER
385
n
36
SER
385
B
LYS
386
n
37
LYS
386
B
PHE
387
n
38
PHE
387
B
GLN
388
n
39
GLN
388
B
GLU
389
n
40
GLU
389
B
LEU
390
n
41
LEU
390
B
VAL
391
n
42
VAL
391
B
LEU
392
n
43
LEU
392
B
PRO
393
n
44
PRO
393
B
HIS
394
n
45
HIS
394
B
n
46
395
B
n
47
396
B
LYS
397
n
48
LYS
397
B
GLU
398
n
49
GLU
398
B
ASP
399
n
50
ASP
399
B
ALA
400
n
51
ALA
400
B
GLY
401
n
52
GLY
401
B
ASP
402
n
53
ASP
402
B
VAL
403
n
54
VAL
403
B
GLN
404
n
55
GLN
404
B
GLN
405
n
56
GLN
405
B
PHE
406
n
57
PHE
406
B
TYR
407
n
58
TYR
407
B
ASP
408
n
59
ASP
408
B
LEU
409
n
60
LEU
409
B
LEU
410
n
61
LEU
410
B
SER
411
n
62
SER
411
B
GLY
412
n
63
GLY
412
B
SER
413
n
64
SER
413
B
LEU
414
n
65
LEU
414
B
GLU
415
n
66
GLU
415
B
VAL
416
n
67
VAL
416
B
ILE
417
n
68
ILE
417
B
ARG
418
n
69
ARG
418
B
LYS
419
n
70
LYS
419
B
TRP
420
n
71
TRP
420
B
ALA
421
n
72
ALA
421
B
GLU
422
n
73
GLU
422
B
LYS
423
n
74
LYS
423
B
ILE
424
n
75
ILE
424
B
PRO
425
n
76
PRO
425
B
GLY
426
n
77
GLY
426
B
PHE
427
n
78
PHE
427
B
ALA
428
n
79
ALA
428
B
GLU
429
n
80
GLU
429
B
LEU
430
n
81
LEU
430
B
SER
431
n
82
SER
431
B
PRO
432
n
83
PRO
432
B
ALA
433
n
84
ALA
433
B
ASP
434
n
85
ASP
434
B
GLN
435
n
86
GLN
435
B
ASP
436
n
87
ASP
436
B
LEU
437
n
88
LEU
437
B
LEU
438
n
89
LEU
438
B
LEU
439
n
90
LEU
439
B
GLU
440
n
91
GLU
440
B
SER
441
n
92
SER
441
B
ALA
442
n
93
ALA
442
B
PHE
443
n
94
PHE
443
B
LEU
444
n
95
LEU
444
B
GLU
445
n
96
GLU
445
B
LEU
446
n
97
LEU
446
B
PHE
447
n
98
PHE
447
B
ILE
448
n
99
ILE
448
B
LEU
449
n
100
LEU
449
B
ARG
450
n
101
ARG
450
B
LEU
451
n
102
LEU
451
B
ALA
452
n
103
ALA
452
B
TYR
453
n
104
TYR
453
B
ARG
454
n
105
ARG
454
B
SER
455
n
106
SER
455
B
LYS
456
n
107
LYS
456
B
PRO
457
n
108
PRO
457
B
GLY
458
n
109
GLY
458
B
GLU
459
n
110
GLU
459
B
GLY
460
n
111
GLY
460
B
LYS
461
n
112
LYS
461
B
LEU
462
n
113
LEU
462
B
ILE
463
n
114
ILE
463
B
PHE
464
n
115
PHE
464
B
CYS
465
n
116
CYS
465
B
SER
466
n
117
SER
466
B
GLY
467
n
118
GLY
467
B
LEU
468
n
119
LEU
468
B
VAL
469
n
120
VAL
469
B
LEU
470
n
121
LEU
470
B
HIS
471
n
122
HIS
471
B
ARG
472
n
123
ARG
472
B
LEU
473
n
124
LEU
473
B
GLN
474
n
125
GLN
474
B
CYS
475
n
126
CYS
475
B
ALA
476
n
127
ALA
476
B
ARG
477
n
128
ARG
477
B
GLY
478
n
129
GLY
478
B
PHE
479
n
130
PHE
479
B
GLY
480
n
131
GLY
480
B
ASP
481
n
132
ASP
481
B
TRP
482
n
133
TRP
482
B
ILE
483
n
134
ILE
483
B
ASP
484
n
135
ASP
484
B
SER
485
n
136
SER
485
B
ILE
486
n
137
ILE
486
B
LEU
487
n
138
LEU
487
B
ALA
488
n
139
ALA
488
B
PHE
489
n
140
PHE
489
B
SER
490
n
141
SER
490
B
ARG
491
n
142
ARG
491
B
SER
492
n
143
SER
492
B
LEU
493
n
144
LEU
493
B
HIS
494
n
145
HIS
494
B
SER
495
n
146
SER
495
B
LEU
496
n
147
LEU
496
B
LEU
497
n
148
LEU
497
B
VAL
498
n
149
VAL
498
B
ASP
499
n
150
ASP
499
B
VAL
500
n
151
VAL
500
B
PRO
501
n
152
PRO
501
B
ALA
502
n
153
ALA
502
B
PHE
503
n
154
PHE
503
B
ALA
504
n
155
ALA
504
B
CYS
505
n
156
CYS
505
B
LEU
506
n
157
LEU
506
B
SER
507
n
158
SER
507
B
ALA
508
n
159
ALA
508
B
LEU
509
n
160
LEU
509
B
VAL
510
n
161
VAL
510
B
LEU
511
n
162
LEU
511
B
ILE
512
n
163
ILE
512
B
THR
513
n
164
THR
513
B
ASP
514
n
165
ASP
514
B
ARG
515
n
166
ARG
515
B
HIS
516
n
167
HIS
516
B
GLY
517
n
168
GLY
517
B
LEU
518
n
169
LEU
518
B
GLN
519
n
170
GLN
519
B
GLU
520
n
171
GLU
520
B
PRO
521
n
172
PRO
521
B
ARG
522
n
173
ARG
522
B
ARG
523
n
174
ARG
523
B
VAL
524
n
175
VAL
524
B
GLU
525
n
176
GLU
525
B
GLU
526
n
177
GLU
526
B
LEU
527
n
178
LEU
527
B
GLN
528
n
179
GLN
528
B
ASN
529
n
180
ASN
529
B
ARG
530
n
181
ARG
530
B
ILE
531
n
182
ILE
531
B
ALA
532
n
183
ALA
532
B
SER
533
n
184
SER
533
B
CYS
534
n
185
CYS
534
B
LEU
535
n
186
LEU
535
B
LYS
536
n
187
LYS
536
B
GLU
537
n
188
GLU
537
B
HIS
538
n
189
HIS
538
B
VAL
539
n
190
VAL
539
B
ALA
540
n
191
ALA
540
B
ALA
541
n
192
ALA
541
B
VAL
542
n
193
VAL
542
B
ALA
543
n
194
ALA
543
B
GLY
544
n
195
GLY
544
B
GLU
545
n
196
GLU
545
B
PRO
546
n
197
PRO
546
B
n
198
547
B
n
199
548
B
ALA
549
n
200
ALA
549
B
SER
550
n
201
SER
550
B
CYS
551
n
202
CYS
551
B
LEU
552
n
203
LEU
552
B
SER
553
n
204
SER
553
B
ARG
554
n
205
ARG
554
B
LEU
555
n
206
LEU
555
B
LEU
556
n
207
LEU
556
B
GLY
557
n
208
GLY
557
B
LYS
558
n
209
LYS
558
B
LEU
559
n
210
LEU
559
B
PRO
560
n
211
PRO
560
B
GLU
561
n
212
GLU
561
B
LEU
562
n
213
LEU
562
B
ARG
563
n
214
ARG
563
B
THR
564
n
215
THR
564
B
LEU
565
n
216
LEU
565
B
CYS
566
n
217
CYS
566
B
THR
567
n
218
THR
567
B
GLN
568
n
219
GLN
568
B
GLY
569
n
220
GLY
569
B
LEU
570
n
221
LEU
570
B
GLN
571
n
222
GLN
571
B
ARG
572
n
223
ARG
572
B
ILE
573
n
224
ILE
573
B
PHE
574
n
225
PHE
574
B
TYR
575
n
226
TYR
575
B
LEU
576
n
227
LEU
576
B
LYS
577
n
228
LYS
577
B
LEU
578
n
229
LEU
578
B
GLU
579
n
230
GLU
579
B
ASP
580
n
231
ASP
580
B
LEU
581
n
232
LEU
581
B
VAL
582
n
233
VAL
582
B
PRO
583
n
234
PRO
583
B
PRO
584
n
235
PRO
584
B
PRO
585
n
236
PRO
585
B
PRO
586
n
237
PRO
586
B
ILE
587
n
238
ILE
587
B
ILE
588
n
239
ILE
588
B
ASP
589
n
240
ASP
589
B
LYS
590
n
241
LYS
590
B
ILE
591
n
242
ILE
591
B
PHE
592
n
243
PHE
592
B
MET
593
n
244
MET
593
B
ASP
594
n
245
ASP
594
B
THR
595
n
246
THR
595
B
LEU
596
n
247
LEU
596
B
PRO
597
n
248
PRO
597
B
PHE
598
n
249
PHE
598
B
n
250
599
B
n
251
600
B
n
252
601
B
n
253
602
B
n
254
603
B
n
255
604
B
n
256
605
B
n
257
606
B
n
1
350
A
n
2
351
A
n
3
352
A
n
4
353
A
n
5
354
A
n
6
355
A
n
7
356
A
n
8
357
A
n
9
358
A
n
10
359
A
n
11
360
A
n
12
361
A
ALA
362
n
13
ALA
362
A
ASN
363
n
14
ASN
363
A
LEU
364
n
15
LEU
364
A
LEU
365
n
16
LEU
365
A
THR
366
n
17
THR
366
A
SER
367
n
18
SER
367
A
LEU
368
n
19
LEU
368
A
VAL
369
n
20
VAL
369
A
ARG
370
n
21
ARG
370
A
ALA
371
n
22
ALA
371
A
HIS
372
n
23
HIS
372
A
LEU
373
n
24
LEU
373
A
ASP
374
n
25
ASP
374
A
SER
375
n
26
SER
375
A
GLY
376
n
27
GLY
376
A
PRO
377
n
28
PRO
377
A
SER
378
n
29
SER
378
A
THR
379
n
30
THR
379
A
ALA
380
n
31
ALA
380
A
LYS
381
n
32
LYS
381
A
LEU
382
n
33
LEU
382
A
ASP
383
n
34
ASP
383
A
TYR
384
n
35
TYR
384
A
SER
385
n
36
SER
385
A
LYS
386
n
37
LYS
386
A
PHE
387
n
38
PHE
387
A
GLN
388
n
39
GLN
388
A
GLU
389
n
40
GLU
389
A
LEU
390
n
41
LEU
390
A
VAL
391
n
42
VAL
391
A
LEU
392
n
43
LEU
392
A
PRO
393
n
44
PRO
393
A
HIS
394
n
45
HIS
394
A
PHE
395
n
46
PHE
395
A
GLY
396
n
47
GLY
396
A
LYS
397
n
48
LYS
397
A
GLU
398
n
49
GLU
398
A
ASP
399
n
50
ASP
399
A
ALA
400
n
51
ALA
400
A
GLY
401
n
52
GLY
401
A
ASP
402
n
53
ASP
402
A
VAL
403
n
54
VAL
403
A
GLN
404
n
55
GLN
404
A
GLN
405
n
56
GLN
405
A
PHE
406
n
57
PHE
406
A
TYR
407
n
58
TYR
407
A
ASP
408
n
59
ASP
408
A
LEU
409
n
60
LEU
409
A
LEU
410
n
61
LEU
410
A
SER
411
n
62
SER
411
A
GLY
412
n
63
GLY
412
A
SER
413
n
64
SER
413
A
LEU
414
n
65
LEU
414
A
GLU
415
n
66
GLU
415
A
VAL
416
n
67
VAL
416
A
ILE
417
n
68
ILE
417
A
ARG
418
n
69
ARG
418
A
LYS
419
n
70
LYS
419
A
TRP
420
n
71
TRP
420
A
ALA
421
n
72
ALA
421
A
GLU
422
n
73
GLU
422
A
LYS
423
n
74
LYS
423
A
ILE
424
n
75
ILE
424
A
PRO
425
n
76
PRO
425
A
GLY
426
n
77
GLY
426
A
PHE
427
n
78
PHE
427
A
ALA
428
n
79
ALA
428
A
GLU
429
n
80
GLU
429
A
LEU
430
n
81
LEU
430
A
SER
431
n
82
SER
431
A
PRO
432
n
83
PRO
432
A
ALA
433
n
84
ALA
433
A
ASP
434
n
85
ASP
434
A
GLN
435
n
86
GLN
435
A
ASP
436
n
87
ASP
436
A
LEU
437
n
88
LEU
437
A
LEU
438
n
89
LEU
438
A
LEU
439
n
90
LEU
439
A
GLU
440
n
91
GLU
440
A
SER
441
n
92
SER
441
A
ALA
442
n
93
ALA
442
A
PHE
443
n
94
PHE
443
A
LEU
444
n
95
LEU
444
A
GLU
445
n
96
GLU
445
A
LEU
446
n
97
LEU
446
A
PHE
447
n
98
PHE
447
A
ILE
448
n
99
ILE
448
A
LEU
449
n
100
LEU
449
A
ARG
450
n
101
ARG
450
A
LEU
451
n
102
LEU
451
A
ALA
452
n
103
ALA
452
A
TYR
453
n
104
TYR
453
A
ARG
454
n
105
ARG
454
A
SER
455
n
106
SER
455
A
LYS
456
n
107
LYS
456
A
PRO
457
n
108
PRO
457
A
GLY
458
n
109
GLY
458
A
GLU
459
n
110
GLU
459
A
GLY
460
n
111
GLY
460
A
LYS
461
n
112
LYS
461
A
LEU
462
n
113
LEU
462
A
ILE
463
n
114
ILE
463
A
PHE
464
n
115
PHE
464
A
CYS
465
n
116
CYS
465
A
SER
466
n
117
SER
466
A
GLY
467
n
118
GLY
467
A
LEU
468
n
119
LEU
468
A
VAL
469
n
120
VAL
469
A
LEU
470
n
121
LEU
470
A
HIS
471
n
122
HIS
471
A
ARG
472
n
123
ARG
472
A
LEU
473
n
124
LEU
473
A
GLN
474
n
125
GLN
474
A
CYS
475
n
126
CYS
475
A
ALA
476
n
127
ALA
476
A
ARG
477
n
128
ARG
477
A
GLY
478
n
129
GLY
478
A
PHE
479
n
130
PHE
479
A
GLY
480
n
131
GLY
480
A
ASP
481
n
132
ASP
481
A
TRP
482
n
133
TRP
482
A
ILE
483
n
134
ILE
483
A
ASP
484
n
135
ASP
484
A
SER
485
n
136
SER
485
A
ILE
486
n
137
ILE
486
A
LEU
487
n
138
LEU
487
A
ALA
488
n
139
ALA
488
A
PHE
489
n
140
PHE
489
A
SER
490
n
141
SER
490
A
ARG
491
n
142
ARG
491
A
SER
492
n
143
SER
492
A
LEU
493
n
144
LEU
493
A
HIS
494
n
145
HIS
494
A
SER
495
n
146
SER
495
A
LEU
496
n
147
LEU
496
A
LEU
497
n
148
LEU
497
A
VAL
498
n
149
VAL
498
A
ASP
499
n
150
ASP
499
A
VAL
500
n
151
VAL
500
A
PRO
501
n
152
PRO
501
A
ALA
502
n
153
ALA
502
A
PHE
503
n
154
PHE
503
A
ALA
504
n
155
ALA
504
A
CYS
505
n
156
CYS
505
A
LEU
506
n
157
LEU
506
A
SER
507
n
158
SER
507
A
ALA
508
n
159
ALA
508
A
LEU
509
n
160
LEU
509
A
VAL
510
n
161
VAL
510
A
LEU
511
n
162
LEU
511
A
ILE
512
n
163
ILE
512
A
THR
513
n
164
THR
513
A
ASP
514
n
165
ASP
514
A
ARG
515
n
166
ARG
515
A
HIS
516
n
167
HIS
516
A
GLY
517
n
168
GLY
517
A
LEU
518
n
169
LEU
518
A
GLN
519
n
170
GLN
519
A
GLU
520
n
171
GLU
520
A
PRO
521
n
172
PRO
521
A
ARG
522
n
173
ARG
522
A
ARG
523
n
174
ARG
523
A
VAL
524
n
175
VAL
524
A
GLU
525
n
176
GLU
525
A
GLU
526
n
177
GLU
526
A
LEU
527
n
178
LEU
527
A
GLN
528
n
179
GLN
528
A
ASN
529
n
180
ASN
529
A
ARG
530
n
181
ARG
530
A
ILE
531
n
182
ILE
531
A
ALA
532
n
183
ALA
532
A
SER
533
n
184
SER
533
A
CYS
534
n
185
CYS
534
A
LEU
535
n
186
LEU
535
A
LYS
536
n
187
LYS
536
A
GLU
537
n
188
GLU
537
A
HIS
538
n
189
HIS
538
A
VAL
539
n
190
VAL
539
A
ALA
540
n
191
ALA
540
A
ALA
541
n
192
ALA
541
A
VAL
542
n
193
VAL
542
A
ALA
543
n
194
ALA
543
A
GLY
544
n
195
GLY
544
A
n
196
545
A
n
197
546
A
n
198
547
A
n
199
548
A
n
200
549
A
SER
550
n
201
SER
550
A
CYS
551
n
202
CYS
551
A
LEU
552
n
203
LEU
552
A
SER
553
n
204
SER
553
A
ARG
554
n
205
ARG
554
A
LEU
555
n
206
LEU
555
A
LEU
556
n
207
LEU
556
A
GLY
557
n
208
GLY
557
A
LYS
558
n
209
LYS
558
A
LEU
559
n
210
LEU
559
A
PRO
560
n
211
PRO
560
A
GLU
561
n
212
GLU
561
A
LEU
562
n
213
LEU
562
A
ARG
563
n
214
ARG
563
A
THR
564
n
215
THR
564
A
LEU
565
n
216
LEU
565
A
CYS
566
n
217
CYS
566
A
THR
567
n
218
THR
567
A
GLN
568
n
219
GLN
568
A
GLY
569
n
220
GLY
569
A
LEU
570
n
221
LEU
570
A
GLN
571
n
222
GLN
571
A
ARG
572
n
223
ARG
572
A
ILE
573
n
224
ILE
573
A
PHE
574
n
225
PHE
574
A
TYR
575
n
226
TYR
575
A
LEU
576
n
227
LEU
576
A
LYS
577
n
228
LYS
577
A
LEU
578
n
229
LEU
578
A
GLU
579
n
230
GLU
579
A
ASP
580
n
231
ASP
580
A
LEU
581
n
232
LEU
581
A
VAL
582
n
233
VAL
582
A
PRO
583
n
234
PRO
583
A
PRO
584
n
235
PRO
584
A
PRO
585
n
236
PRO
585
A
PRO
586
n
237
PRO
586
A
ILE
587
n
238
ILE
587
A
ILE
588
n
239
ILE
588
A
ASP
589
n
240
ASP
589
A
LYS
590
n
241
LYS
590
A
ILE
591
n
242
ILE
591
A
PHE
592
n
243
PHE
592
A
MET
593
n
244
MET
593
A
ASP
594
n
245
ASP
594
A
THR
595
n
246
THR
595
A
LEU
596
n
247
LEU
596
A
PRO
597
n
248
PRO
597
A
PHE
598
n
249
PHE
598
A
n
250
599
A
n
251
600
A
n
252
601
A
n
253
602
A
n
254
603
A
n
255
604
A
n
256
605
A
n
257
606
A
author_defined_assembly
1
monomeric
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
B
N
LEU
462
A
N
LEU
113
B
O
LEU
470
A
O
LEU
121
A
N
LEU
462
B
N
LEU
113
A
O
LEU
470
B
O
LEU
121
1
B
CB
ALA
362
A
CB
ALA
13
1
Y
1
B
CG
LYS
381
A
CG
LYS
32
1
Y
1
B
CD
LYS
381
A
CD
LYS
32
1
Y
1
B
CE
LYS
381
A
CE
LYS
32
1
Y
1
B
NZ
LYS
381
A
NZ
LYS
32
1
Y
1
B
CD
GLN
388
A
CD
GLN
39
1
Y
1
B
OE1
GLN
388
A
OE1
GLN
39
1
Y
1
B
NE2
GLN
388
A
NE2
GLN
39
1
Y
1
B
CG
LYS
397
A
CG
LYS
48
1
Y
1
B
CD
LYS
397
A
CD
LYS
48
1
Y
1
B
CE
LYS
397
A
CE
LYS
48
1
Y
1
B
NZ
LYS
397
A
NZ
LYS
48
1
Y
1
B
CG
GLU
545
A
CG
GLU
196
1
Y
1
B
CD
GLU
545
A
CD
GLU
196
1
Y
1
B
OE1
GLU
545
A
OE1
GLU
196
1
Y
1
B
OE2
GLU
545
A
OE2
GLU
196
1
Y
1
B
MET
350
A
MET
1
1
Y
1
B
SER
351
A
SER
2
1
Y
1
B
LYS
352
A
LYS
3
1
Y
1
B
PRO
353
A
PRO
4
1
Y
1
B
LYS
354
A
LYS
5
1
Y
1
B
GLN
355
A
GLN
6
1
Y
1
B
PRO
356
A
PRO
7
1
Y
1
B
PRO
357
A
PRO
8
1
Y
1
B
ASP
358
A
ASP
9
1
Y
1
B
ALA
359
A
ALA
10
1
Y
1
B
SER
360
A
SER
11
1
Y
1
B
PHE
395
A
PHE
46
1
Y
1
B
GLY
396
A
GLY
47
1
Y
1
B
GLN
547
A
GLN
198
1
Y
1
B
PRO
548
A
PRO
199
1
Y
1
B
LEU
599
A
LEU
250
1
Y
1
B
GLU
600
A
GLU
251
1
Y
1
B
HIS
601
A
HIS
252
1
Y
1
B
HIS
602
A
HIS
253
1
Y
1
B
HIS
603
A
HIS
254
1
Y
1
B
HIS
604
A
HIS
255
1
Y
1
B
HIS
605
A
HIS
256
1
Y
1
B
HIS
606
A
HIS
257
1
Y
1
A
MET
350
B
MET
1
1
Y
1
A
SER
351
B
SER
2
1
Y
1
A
LYS
352
B
LYS
3
1
Y
1
A
PRO
353
B
PRO
4
1
Y
1
A
LYS
354
B
LYS
5
1
Y
1
A
GLN
355
B
GLN
6
1
Y
1
A
PRO
356
B
PRO
7
1
Y
1
A
PRO
357
B
PRO
8
1
Y
1
A
ASP
358
B
ASP
9
1
Y
1
A
ALA
359
B
ALA
10
1
Y
1
A
SER
360
B
SER
11
1
Y
1
A
PRO
361
B
PRO
12
1
Y
1
A
GLU
545
B
GLU
196
1
Y
1
A
PRO
546
B
PRO
197
1
Y
1
A
GLN
547
B
GLN
198
1
Y
1
A
PRO
548
B
PRO
199
1
Y
1
A
ALA
549
B
ALA
200
1
Y
1
A
LEU
599
B
LEU
250
1
Y
1
A
GLU
600
B
GLU
251
1
Y
1
A
HIS
601
B
HIS
252
1
Y
1
A
HIS
602
B
HIS
253
1
Y
1
A
HIS
603
B
HIS
254
1
Y
1
A
HIS
604
B
HIS
255
1
Y
1
A
HIS
605
B
HIS
256
1
Y
1
A
HIS
606
B
HIS
257
1
Y
1
B
B
O
OG
ALA
SER
549
553
2.09
1
A
A
NH2
OD1
ARG
ASP
370
374
2.11
1
A
A
OE1
C9
GLU
ZJ0
445
703
2.15
1
B
B
LEU
PRO
392
393
-38.37
1
-26.66
2.20
120.60
93.94
B
B
B
C
N
CD
LEU
PRO
PRO
392
393
393
Y
1
B
A
OE1
OD2
GLU
ASP
459
580
2.05
1_555
3_544
1
B
ALA
362
97.44
-103.09
1
B
GLU
398
-45.31
153.33
1
B
GLU
545
-54.13
-178.08
1
B
PRO
597
-66.53
35.71
1
A
THR
379
-48.72
-81.41
1
A
ALA
380
-52.24
103.25
1
A
LYS
381
126.98
2.93
1
A
PRO
597
-70.32
36.97
190.670
60.6643
28.450
0.9800
-0.0000
0.0000
0.1500
-0.0000
-1.1300
0.9450
0.9200
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES: REFINED INDIVIDUALLY
0.2486
0.2061
0.2083
2.4100
37.2800
1486
29377
29148
5.1000
99.1000
0.2470
0.2059
1.000
0.500
0.8142
7.2800
0.1680
0.2771
0.2254
RANDOM
1
THROUGHOUT
0.000
MOLECULAR REPLACEMENT
0.2770
0.2250
0.8000
0.8000
1.2000
MAXIMUM LIKELIHOOD
MASK
2.4100
37.2800
92
3772
39
0
3641
0.016
0.019
3753
0.006
0.020
3720
1.787
2.007
5075
1.219
3.000
8562
5.986
5.000
461
38.433
23.182
154
18.983
15.000
646
18.035
15.000
28
0.096
0.200
587
0.011
0.021
4108
0.005
0.020
820
0.3360
0.2830
2.4680
117
1948
2065
20
96.5900
2.400
50.000
4KZI
29377
29201
0
0
0.085
1.238
1
9.000
4.700
99.400
0.455
2.400
2.440
1416
0.882
1
4.900
100.000
0.401
2.440
2.490
1469
0.882
1
4.900
100.000
0.344
2.490
2.530
1446
0.897
1
4.900
100.000
0.333
2.530
2.590
1422
0.898
1
4.900
100.000
0.270
2.590
2.640
1440
0.976
1
4.900
100.000
0.241
2.640
2.700
1454
0.999
1
4.900
100.000
0.214
2.700
2.770
1453
1.005
1
4.900
100.000
0.188
2.770
2.850
1460
1.114
1
4.900
100.000
0.158
2.850
2.930
1453
1.116
1
4.900
100.000
0.144
2.930
3.020
1437
1.177
1
4.800
99.900
0.128
3.020
3.130
1465
1.296
1
4.800
99.900
0.108
3.130
3.260
1450
1.375
1
4.800
99.900
0.094
3.260
3.410
1471
1.559
1
4.700
100.000
0.084
3.410
3.580
1461
1.596
1
4.600
99.800
0.077
3.580
3.810
1477
1.786
1
4.500
99.900
0.072
3.810
4.100
1477
1.610
1
4.400
99.800
0.067
4.100
4.520
1479
1.630
1
4.300
99.700
0.063
4.520
5.170
1492
1.496
1
4.300
99.600
0.063
5.170
6.510
1509
1.449
1
4.300
99.300
0.059
6.510
50.000
1470
1.262
1
3.800
90.600
data reduction
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
DENZO
package
data scaling
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
SCALEPACK
package
refinement
Garib N. Murshudov
garib@ysbl.york.ac.uk
Fortran_77
http://www.ccp4.ac.uk/dist/html/refmac5.html
REFMAC
program
data extraction
PDB
deposit@deposit.rcsb.org
April 22, 2011
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.11
data collection
Blu-Ice
data reduction
HKL-2000
data scaling
HKL-2000
phasing
PHASER
Crystal Structure of TR3 LBD in complex with DPDO
1
N
N
1
N
N
2
N
N
2
N
N
2
N
N
3
N
N
4
N
N
4
N
N
B
ALA
362
A
ALA
13
HELX_P
B
SER
375
A
SER
26
1
1
14
B
ASP
399
A
ASP
50
HELX_P
B
LYS
423
A
LYS
74
1
2
25
B
GLY
426
A
GLY
77
HELX_P
B
LEU
430
A
LEU
81
5
3
5
B
SER
431
A
SER
82
HELX_P
B
SER
455
A
SER
106
1
4
25
B
LYS
456
A
LYS
107
HELX_P
B
GLU
459
A
GLU
110
5
5
4
B
ARG
472
A
ARG
123
HELX_P
B
GLY
480
A
GLY
131
1
6
9
B
ASP
481
A
ASP
132
HELX_P
B
LEU
496
A
LEU
147
1
7
16
B
ASP
499
A
ASP
150
HELX_P
B
ILE
512
A
ILE
163
1
8
14
B
GLU
520
A
GLU
171
HELX_P
B
VAL
542
A
VAL
193
1
9
23
B
SER
550
A
SER
201
HELX_P
B
GLY
557
A
GLY
208
1
10
8
B
GLY
557
A
GLY
208
HELX_P
B
ASP
580
A
ASP
231
1
11
24
B
PRO
585
A
PRO
236
HELX_P
B
LEU
596
A
LEU
247
1
12
12
A
ASN
363
B
ASN
14
HELX_P
A
SER
375
B
SER
26
1
13
13
A
ASP
399
B
ASP
50
HELX_P
A
GLU
422
B
GLU
73
1
14
24
A
GLY
426
B
GLY
77
HELX_P
A
LEU
430
B
LEU
81
5
15
5
A
SER
431
B
SER
82
HELX_P
A
SER
455
B
SER
106
1
16
25
A
LYS
456
B
LYS
107
HELX_P
A
GLU
459
B
GLU
110
5
17
4
A
ARG
472
B
ARG
123
HELX_P
A
GLY
480
B
GLY
131
1
18
9
A
ASP
481
B
ASP
132
HELX_P
A
LEU
496
B
LEU
147
1
19
16
A
ASP
499
B
ASP
150
HELX_P
A
ILE
512
B
ILE
163
1
20
14
A
GLU
520
B
GLU
171
HELX_P
A
GLY
544
B
GLY
195
1
21
25
A
CYS
551
B
CYS
202
HELX_P
A
GLY
557
B
GLY
208
1
22
7
A
LYS
558
B
LYS
209
HELX_P
A
ASP
580
B
ASP
231
1
23
23
A
PRO
585
B
PRO
236
HELX_P
A
LEU
596
B
LEU
247
1
24
12
TRANSCRIPTION
ORPHAN NUCLEAR RECEPTOR, TRANSCRIPTION
B
PRO
361
A
PRO
12
1
B
ALA
362
A
ALA
13
-22.04
B
GLU
545
A
GLU
196
1
B
PRO
546
A
PRO
197
12.86
NR4A1_HUMAN
UNP
1
351
P22736
SKPKQPPDASPANLLTSLVRAHLDSGPSTAKLDYSKFQELVLPHFGKEDAGDVQQFYDLLSGSLEVIRKWAEKIPGFAEL
SPADQDLLLESAFLELFILRLAYRSKPGEGKLIFCSGLVLHRLQCARGFGDWIDSILAFSRSLHSLLVDVPAFACLSALV
LITDRHGLQEPRRVEELQNRIASCLKEHVAAVAGEPQPASCLSRLLGKLPELRTLCTQGLQRIFYLKLEDLVPPPPIIDK
IFMDTLPF
351
598
4KZI
351
598
P22736
B
1
2
249
351
598
4KZI
351
598
P22736
A
1
2
249
1
expression tag
MET
350
4KZI
B
P22736
UNP
1
1
expression tag
LEU
599
4KZI
B
P22736
UNP
250
1
expression tag
GLU
600
4KZI
B
P22736
UNP
251
1
expression tag
HIS
601
4KZI
B
P22736
UNP
252
1
expression tag
HIS
602
4KZI
B
P22736
UNP
253
1
expression tag
HIS
603
4KZI
B
P22736
UNP
254
1
expression tag
HIS
604
4KZI
B
P22736
UNP
255
1
expression tag
HIS
605
4KZI
B
P22736
UNP
256
1
expression tag
HIS
606
4KZI
B
P22736
UNP
257
2
expression tag
MET
350
4KZI
A
P22736
UNP
1
2
expression tag
LEU
599
4KZI
A
P22736
UNP
250
2
expression tag
GLU
600
4KZI
A
P22736
UNP
251
2
expression tag
HIS
601
4KZI
A
P22736
UNP
252
2
expression tag
HIS
602
4KZI
A
P22736
UNP
253
2
expression tag
HIS
603
4KZI
A
P22736
UNP
254
2
expression tag
HIS
604
4KZI
A
P22736
UNP
255
2
expression tag
HIS
605
4KZI
A
P22736
UNP
256
2
expression tag
HIS
606
4KZI
A
P22736
UNP
257
2
2
anti-parallel
anti-parallel
B
LYS
461
A
LYS
112
B
ILE
463
A
ILE
114
B
VAL
469
A
VAL
120
B
HIS
471
A
HIS
122
A
LYS
461
B
LYS
112
A
ILE
463
B
ILE
114
A
VAL
469
B
VAL
120
A
HIS
471
B
HIS
122
BINDING SITE FOR RESIDUE GOL B 701
B
GOL
701
Software
7
BINDING SITE FOR RESIDUE GOL A 701
A
GOL
701
Software
4
BINDING SITE FOR RESIDUE GOL A 702
A
GOL
702
Software
8
BINDING SITE FOR RESIDUE ZJ0 A 703
A
ZJ0
703
Software
15
B
HIS
372
A
HIS
23
7
1_555
B
SER
375
A
SER
26
7
1_555
B
GLY
376
A
GLY
27
7
1_555
B
ARG
450
A
ARG
101
7
1_555
B
ARG
454
A
ARG
105
7
1_555
B
HOH
813
G
HOH
7
1_555
B
HOH
826
G
HOH
7
1_555
A
LEU
509
B
LEU
160
4
1_555
A
VAL
510
B
VAL
161
4
1_555
A
THR
513
B
THR
164
4
1_555
A
ZJ0
703
F
ZJ0
4
1_555
A
HIS
372
B
HIS
23
8
1_555
A
SER
375
B
SER
26
8
1_555
A
GLY
376
B
GLY
27
8
1_555
A
PRO
377
B
PRO
28
8
1_555
A
ARG
450
B
ARG
101
8
1_555
A
ARG
454
B
ARG
105
8
1_555
A
HOH
806
H
HOH
8
1_555
A
HOH
812
H
HOH
8
1_555
A
SER
441
B
SER
92
15
1_555
A
ALA
442
B
ALA
93
15
1_555
A
LEU
444
B
LEU
95
15
1_555
A
GLU
445
B
GLU
96
15
1_555
A
GLU
459
B
GLU
110
15
4_545
A
VAL
510
B
VAL
161
15
1_555
A
THR
513
B
THR
164
15
1_555
A
ASP
514
B
ASP
165
15
1_555
A
ARG
515
B
ARG
166
15
1_555
A
ARG
563
B
ARG
214
15
1_555
A
CYS
566
B
CYS
217
15
1_555
A
GOL
701
D
GOL
15
1_555
A
HOH
822
H
HOH
15
1_555
A
HOH
826
H
HOH
15
1_555
A
HOH
833
H
HOH
15
1_555
19
P 21 21 21