0.029730 0.000000 0.000000 0.000000 0.014700 0.000000 0.000000 0.000000 0.008549 0.000000 0.000000 0.000000 Wier, A.D. Heroux, A. VanDemark, A.P. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.000 90.000 90.000 33.636 68.025 116.972 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C3 H8 O3 92.094 GLYCEROL GLYCERIN; PROPANE-1,2,3-TRIOL non-polymer C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N C N 138 N O N 139 N C N 140 N O N 141 N C N 142 N O N 143 N H N 144 N H N 145 N H N 146 N H N 147 N H N 148 N H N 149 N H N 150 N H N 151 N N N 152 S C N 153 N C N 154 N O N 155 N C Y 156 N C Y 157 N N Y 158 N C Y 159 N C Y 160 N N N 161 N O N 162 N H N 163 N H N 164 N H N 165 N H N 166 N H N 167 N H N 168 N H N 169 N H N 170 N H N 171 N H N 172 N O N 173 N H N 174 N H N 175 N N N 176 S C N 177 N C N 178 N O N 179 S C N 180 N C N 181 N C N 182 N C N 183 N O N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N N N 198 S C N 199 N C N 200 N O N 201 N C N 202 N C N 203 N C N 204 N C N 205 N O N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N H N 218 N H N 219 N N N 220 S C N 221 N C N 222 N O N 223 N C N 224 N C N 225 N C N 226 N C N 227 N N N 228 N O N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N H N 237 N H N 238 N H N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N N N 245 S C N 246 N C N 247 N O N 248 N C N 249 N C N 250 N S N 251 N C N 252 N O N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N H N 260 N H N 261 N H N 262 N H N 263 N H N 264 N N N 265 S C N 266 N C N 267 N O N 268 N C Y 269 N C Y 270 N C Y 271 N C Y 272 N C Y 273 N C Y 274 N C N 275 N O N 276 N H N 277 N H N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N N N 288 S C N 289 N C N 290 N O N 291 N C N 292 N C N 293 N C N 294 N O N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N N N 305 S C N 306 N C N 307 N O N 308 N C N 309 N O N 310 N O N 311 N H N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N N N 319 S C N 320 N C N 321 N O N 322 R C N 323 N O N 324 N C N 325 N O N 326 N H N 327 N H N 328 N H N 329 N H N 330 N H N 331 N H N 332 N H N 333 N H N 334 N H N 335 N N N 336 S C N 337 N C N 338 N O N 339 N C Y 340 N C Y 341 N C Y 342 N C Y 343 N N Y 344 N C Y 345 N C Y 346 N C Y 347 N C Y 348 N C N 349 N O N 350 N H N 351 N H N 352 N H N 353 N H N 354 N H N 355 N H N 356 N H N 357 N H N 358 N H N 359 N H N 360 N H N 361 N H N 362 N N N 363 S C N 364 N C N 365 N O N 366 N C Y 367 N C Y 368 N C Y 369 N C Y 370 N C Y 371 N C Y 372 N C N 373 N O N 374 N O N 375 N H N 376 N H N 377 N H N 378 N H N 379 N H N 380 N H N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N N N 387 S C N 388 N C N 389 N O N 390 N C N 391 N C N 392 N C N 393 N O N 394 N H N 395 N H N 396 N H N 397 N H N 398 N H N 399 N H N 400 N H N 401 N H N 402 N H N 403 N H N 404 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N doub N 149 N sing N 150 N sing N 151 N sing N 152 N sing Y 153 N sing Y 154 N doub Y 155 N doub N 156 N sing Y 157 N sing N 158 N sing Y 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N doub N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N doub N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N doub N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N doub N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N doub N 257 N sing N 258 N sing N 259 N sing N 260 N sing Y 261 N doub Y 262 N sing Y 263 N sing N 264 N sing Y 265 N doub N 266 N sing Y 267 N doub N 268 N sing Y 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N doub N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N doub N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N doub N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N doub N 326 N sing N 327 N sing N 328 N sing N 329 N sing Y 330 N doub Y 331 N sing Y 332 N sing N 333 N sing Y 334 N doub Y 335 N sing Y 336 N sing N 337 N sing Y 338 N sing Y 339 N doub N 340 N sing Y 341 N doub N 342 N sing Y 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N doub N 354 N sing N 355 N sing N 356 N sing N 357 N sing Y 358 N doub Y 359 N sing Y 360 N sing N 361 N sing Y 362 N doub N 363 N sing Y 364 N doub N 365 N sing Y 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N doub N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing US Proc.Natl.Acad.Sci.USA PNASA6 0040 0027-8424 110 17290 17295 10.1073/pnas.1314754110 24101474 Structural basis for Spt5-mediated recruitment of the Paf1 complex to chromatin. 2013 10.2210/pdb4l1p/pdb pdb_00004l1p 100 1 IMAGE PLATE DETECTOR IMAGE PLATE 2012-05-30 RIGAKU RAXIS IV++ SINGLE WAVELENGTH M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE RIGAKU FR-E DW 15920.326 RNA polymerase-associated protein RTF1 homolog UNP residues 353-484 2 man polymer 92.094 GLYCEROL 5 syn non-polymer 18.015 water 71 nat water no no GDITHMVSLPEELNRVRLSRHKLERWCHMPFFAKTVTGCFVRIGIGNHNSKPVYRVAEITGVVETAKVYQLGGTRTNKGL QLRHGNDQRVFRLEFVSNQEFTESEFMKWKEAMFSAGMQLPTLDEINKKELSIKEALN GDITHMVSLPEELNRVRLSRHKLERWCHMPFFAKTVTGCFVRIGIGNHNSKPVYRVAEITGVVETAKVYQLGGTRTNKGL QLRHGNDQRVFRLEFVSNQEFTESEFMKWKEAMFSAGMQLPTLDEINKKELSIKEALN B,A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human sample KIAA0252, RTF1 9606 Homo sapiens 469008 Escherichia coli BL21(DE3) Codon+RILP plasmid pLC3 1 2.10 41.47 VAPOR DIFFUSION, SITTING DROP 5.5 Trisodium citrate, PEG 3000, pH 5.5, vapor diffusion, sitting drop, temperature 293K 293 software chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model struct_ref_seq_dif struct_site repository Initial release Database references Database references Refinement description Data collection Database references Derived calculations Refinement description 1 0 2013-10-02 1 1 2013-10-23 1 2 2013-11-20 1 3 2017-11-15 1 4 2023-09-20 _software.classification _software.name _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id RCSB Y RCSB 2013-06-03 REL REL GOL GLYCEROL HOH water 3U1U PDB ENTRY 3U1U PDB experimental model GOL 2 2 GOL GOL 501 B GOL 3 2 GOL GOL 502 B GOL 5 2 GOL GOL 503 B GOL 6 2 GOL GOL 504 B GOL 1 2 GOL GOL 501 A HOH 3 3 HOH HOH 601 B HOH 5 3 HOH HOH 602 B HOH 6 3 HOH HOH 603 B HOH 8 3 HOH HOH 604 B HOH 10 3 HOH HOH 605 B HOH 13 3 HOH HOH 606 B HOH 14 3 HOH HOH 607 B HOH 15 3 HOH HOH 608 B HOH 16 3 HOH HOH 609 B HOH 18 3 HOH HOH 610 B HOH 19 3 HOH HOH 611 B HOH 22 3 HOH HOH 612 B HOH 23 3 HOH HOH 613 B HOH 25 3 HOH HOH 614 B HOH 27 3 HOH HOH 615 B HOH 28 3 HOH HOH 616 B HOH 29 3 HOH HOH 617 B HOH 35 3 HOH HOH 618 B HOH 36 3 HOH HOH 619 B HOH 38 3 HOH HOH 620 B HOH 39 3 HOH HOH 621 B HOH 41 3 HOH HOH 622 B HOH 44 3 HOH HOH 623 B HOH 46 3 HOH HOH 624 B HOH 47 3 HOH HOH 625 B HOH 50 3 HOH HOH 626 B HOH 52 3 HOH HOH 627 B HOH 53 3 HOH HOH 628 B HOH 54 3 HOH HOH 629 B HOH 55 3 HOH HOH 630 B HOH 59 3 HOH HOH 631 B HOH 60 3 HOH HOH 632 B HOH 62 3 HOH HOH 633 B HOH 63 3 HOH HOH 634 B HOH 69 3 HOH HOH 635 B HOH 70 3 HOH HOH 636 B HOH 71 3 HOH HOH 637 B HOH 72 3 HOH HOH 638 B HOH 74 3 HOH HOH 639 B HOH 75 3 HOH HOH 640 B HOH 76 3 HOH HOH 641 B HOH 1 3 HOH HOH 601 A HOH 2 3 HOH HOH 602 A HOH 4 3 HOH HOH 603 A HOH 7 3 HOH HOH 604 A HOH 9 3 HOH HOH 605 A HOH 11 3 HOH HOH 606 A HOH 12 3 HOH HOH 607 A HOH 17 3 HOH HOH 608 A HOH 20 3 HOH HOH 609 A HOH 21 3 HOH HOH 610 A HOH 24 3 HOH HOH 611 A HOH 26 3 HOH HOH 612 A HOH 31 3 HOH HOH 613 A HOH 32 3 HOH HOH 614 A HOH 33 3 HOH HOH 615 A HOH 34 3 HOH HOH 616 A HOH 37 3 HOH HOH 617 A HOH 40 3 HOH HOH 618 A HOH 42 3 HOH HOH 619 A HOH 45 3 HOH HOH 620 A HOH 48 3 HOH HOH 621 A HOH 49 3 HOH HOH 622 A HOH 51 3 HOH HOH 623 A HOH 56 3 HOH HOH 624 A HOH 57 3 HOH HOH 625 A HOH 66 3 HOH HOH 626 A HOH 73 3 HOH HOH 627 A HOH 77 3 HOH HOH 628 A HOH 78 3 HOH HOH 629 A HOH 79 3 HOH HOH 630 A 2.500 2.500 29.160 29.160 Phaser MODE: MR_AUTO n 1 347 B n 2 348 B n 3 349 B n 4 350 B HIS 351 n 5 HIS 351 B MET 352 n 6 MET 352 B VAL 353 n 7 VAL 353 B SER 354 n 8 SER 354 B LEU 355 n 9 LEU 355 B PRO 356 n 10 PRO 356 B GLU 357 n 11 GLU 357 B GLU 358 n 12 GLU 358 B LEU 359 n 13 LEU 359 B ASN 360 n 14 ASN 360 B ARG 361 n 15 ARG 361 B VAL 362 n 16 VAL 362 B ARG 363 n 17 ARG 363 B LEU 364 n 18 LEU 364 B SER 365 n 19 SER 365 B ARG 366 n 20 ARG 366 B HIS 367 n 21 HIS 367 B LYS 368 n 22 LYS 368 B LEU 369 n 23 LEU 369 B GLU 370 n 24 GLU 370 B ARG 371 n 25 ARG 371 B TRP 372 n 26 TRP 372 B CYS 373 n 27 CYS 373 B HIS 374 n 28 HIS 374 B MET 375 n 29 MET 375 B PRO 376 n 30 PRO 376 B PHE 377 n 31 PHE 377 B PHE 378 n 32 PHE 378 B ALA 379 n 33 ALA 379 B LYS 380 n 34 LYS 380 B THR 381 n 35 THR 381 B VAL 382 n 36 VAL 382 B THR 383 n 37 THR 383 B GLY 384 n 38 GLY 384 B CYS 385 n 39 CYS 385 B PHE 386 n 40 PHE 386 B VAL 387 n 41 VAL 387 B ARG 388 n 42 ARG 388 B ILE 389 n 43 ILE 389 B GLY 390 n 44 GLY 390 B ILE 391 n 45 ILE 391 B GLY 392 n 46 GLY 392 B ASN 393 n 47 ASN 393 B HIS 394 n 48 HIS 394 B ASN 395 n 49 ASN 395 B SER 396 n 50 SER 396 B LYS 397 n 51 LYS 397 B PRO 398 n 52 PRO 398 B VAL 399 n 53 VAL 399 B TYR 400 n 54 TYR 400 B ARG 401 n 55 ARG 401 B VAL 402 n 56 VAL 402 B ALA 403 n 57 ALA 403 B GLU 404 n 58 GLU 404 B ILE 405 n 59 ILE 405 B THR 406 n 60 THR 406 B GLY 407 n 61 GLY 407 B VAL 408 n 62 VAL 408 B VAL 409 n 63 VAL 409 B GLU 410 n 64 GLU 410 B THR 411 n 65 THR 411 B ALA 412 n 66 ALA 412 B LYS 413 n 67 LYS 413 B VAL 414 n 68 VAL 414 B TYR 415 n 69 TYR 415 B GLN 416 n 70 GLN 416 B LEU 417 n 71 LEU 417 B GLY 418 n 72 GLY 418 B GLY 419 n 73 GLY 419 B THR 420 n 74 THR 420 B ARG 421 n 75 ARG 421 B THR 422 n 76 THR 422 B ASN 423 n 77 ASN 423 B LYS 424 n 78 LYS 424 B GLY 425 n 79 GLY 425 B LEU 426 n 80 LEU 426 B GLN 427 n 81 GLN 427 B LEU 428 n 82 LEU 428 B ARG 429 n 83 ARG 429 B HIS 430 n 84 HIS 430 B GLY 431 n 85 GLY 431 B ASN 432 n 86 ASN 432 B ASP 433 n 87 ASP 433 B GLN 434 n 88 GLN 434 B ARG 435 n 89 ARG 435 B VAL 436 n 90 VAL 436 B PHE 437 n 91 PHE 437 B ARG 438 n 92 ARG 438 B LEU 439 n 93 LEU 439 B GLU 440 n 94 GLU 440 B PHE 441 n 95 PHE 441 B VAL 442 n 96 VAL 442 B SER 443 n 97 SER 443 B ASN 444 n 98 ASN 444 B GLN 445 n 99 GLN 445 B GLU 446 n 100 GLU 446 B PHE 447 n 101 PHE 447 B THR 448 n 102 THR 448 B GLU 449 n 103 GLU 449 B SER 450 n 104 SER 450 B GLU 451 n 105 GLU 451 B PHE 452 n 106 PHE 452 B MET 453 n 107 MET 453 B LYS 454 n 108 LYS 454 B TRP 455 n 109 TRP 455 B LYS 456 n 110 LYS 456 B GLU 457 n 111 GLU 457 B ALA 458 n 112 ALA 458 B MET 459 n 113 MET 459 B PHE 460 n 114 PHE 460 B SER 461 n 115 SER 461 B ALA 462 n 116 ALA 462 B GLY 463 n 117 GLY 463 B MET 464 n 118 MET 464 B GLN 465 n 119 GLN 465 B LEU 466 n 120 LEU 466 B PRO 467 n 121 PRO 467 B THR 468 n 122 THR 468 B LEU 469 n 123 LEU 469 B ASP 470 n 124 ASP 470 B GLU 471 n 125 GLU 471 B ILE 472 n 126 ILE 472 B ASN 473 n 127 ASN 473 B LYS 474 n 128 LYS 474 B LYS 475 n 129 LYS 475 B GLU 476 n 130 GLU 476 B LEU 477 n 131 LEU 477 B SER 478 n 132 SER 478 B ILE 479 n 133 ILE 479 B LYS 480 n 134 LYS 480 B GLU 481 n 135 GLU 481 B ALA 482 n 136 ALA 482 B n 137 483 B n 138 484 B n 1 347 A n 2 348 A n 3 349 A n 4 350 A HIS 351 n 5 HIS 351 A MET 352 n 6 MET 352 A VAL 353 n 7 VAL 353 A SER 354 n 8 SER 354 A LEU 355 n 9 LEU 355 A PRO 356 n 10 PRO 356 A GLU 357 n 11 GLU 357 A GLU 358 n 12 GLU 358 A LEU 359 n 13 LEU 359 A ASN 360 n 14 ASN 360 A ARG 361 n 15 ARG 361 A VAL 362 n 16 VAL 362 A ARG 363 n 17 ARG 363 A LEU 364 n 18 LEU 364 A SER 365 n 19 SER 365 A ARG 366 n 20 ARG 366 A HIS 367 n 21 HIS 367 A LYS 368 n 22 LYS 368 A LEU 369 n 23 LEU 369 A GLU 370 n 24 GLU 370 A ARG 371 n 25 ARG 371 A TRP 372 n 26 TRP 372 A CYS 373 n 27 CYS 373 A HIS 374 n 28 HIS 374 A MET 375 n 29 MET 375 A PRO 376 n 30 PRO 376 A PHE 377 n 31 PHE 377 A PHE 378 n 32 PHE 378 A ALA 379 n 33 ALA 379 A LYS 380 n 34 LYS 380 A THR 381 n 35 THR 381 A VAL 382 n 36 VAL 382 A THR 383 n 37 THR 383 A GLY 384 n 38 GLY 384 A CYS 385 n 39 CYS 385 A PHE 386 n 40 PHE 386 A VAL 387 n 41 VAL 387 A ARG 388 n 42 ARG 388 A ILE 389 n 43 ILE 389 A GLY 390 n 44 GLY 390 A ILE 391 n 45 ILE 391 A n 46 392 A n 47 393 A n 48 394 A n 49 395 A n 50 396 A n 51 397 A PRO 398 n 52 PRO 398 A VAL 399 n 53 VAL 399 A TYR 400 n 54 TYR 400 A ARG 401 n 55 ARG 401 A VAL 402 n 56 VAL 402 A ALA 403 n 57 ALA 403 A GLU 404 n 58 GLU 404 A ILE 405 n 59 ILE 405 A THR 406 n 60 THR 406 A GLY 407 n 61 GLY 407 A VAL 408 n 62 VAL 408 A VAL 409 n 63 VAL 409 A GLU 410 n 64 GLU 410 A THR 411 n 65 THR 411 A ALA 412 n 66 ALA 412 A LYS 413 n 67 LYS 413 A VAL 414 n 68 VAL 414 A TYR 415 n 69 TYR 415 A GLN 416 n 70 GLN 416 A LEU 417 n 71 LEU 417 A GLY 418 n 72 GLY 418 A GLY 419 n 73 GLY 419 A THR 420 n 74 THR 420 A ARG 421 n 75 ARG 421 A THR 422 n 76 THR 422 A ASN 423 n 77 ASN 423 A LYS 424 n 78 LYS 424 A GLY 425 n 79 GLY 425 A LEU 426 n 80 LEU 426 A GLN 427 n 81 GLN 427 A LEU 428 n 82 LEU 428 A ARG 429 n 83 ARG 429 A HIS 430 n 84 HIS 430 A GLY 431 n 85 GLY 431 A ASN 432 n 86 ASN 432 A ASP 433 n 87 ASP 433 A GLN 434 n 88 GLN 434 A ARG 435 n 89 ARG 435 A VAL 436 n 90 VAL 436 A PHE 437 n 91 PHE 437 A ARG 438 n 92 ARG 438 A LEU 439 n 93 LEU 439 A GLU 440 n 94 GLU 440 A PHE 441 n 95 PHE 441 A VAL 442 n 96 VAL 442 A SER 443 n 97 SER 443 A ASN 444 n 98 ASN 444 A GLN 445 n 99 GLN 445 A GLU 446 n 100 GLU 446 A PHE 447 n 101 PHE 447 A THR 448 n 102 THR 448 A GLU 449 n 103 GLU 449 A SER 450 n 104 SER 450 A GLU 451 n 105 GLU 451 A PHE 452 n 106 PHE 452 A MET 453 n 107 MET 453 A LYS 454 n 108 LYS 454 A TRP 455 n 109 TRP 455 A LYS 456 n 110 LYS 456 A GLU 457 n 111 GLU 457 A ALA 458 n 112 ALA 458 A MET 459 n 113 MET 459 A PHE 460 n 114 PHE 460 A SER 461 n 115 SER 461 A ALA 462 n 116 ALA 462 A GLY 463 n 117 GLY 463 A MET 464 n 118 MET 464 A GLN 465 n 119 GLN 465 A LEU 466 n 120 LEU 466 A PRO 467 n 121 PRO 467 A THR 468 n 122 THR 468 A LEU 469 n 123 LEU 469 A ASP 470 n 124 ASP 470 A GLU 471 n 125 GLU 471 A ILE 472 n 126 ILE 472 A ASN 473 n 127 ASN 473 A LYS 474 n 128 LYS 474 A LYS 475 n 129 LYS 475 A GLU 476 n 130 GLU 476 A LEU 477 n 131 LEU 477 A SER 478 n 132 SER 478 A ILE 479 n 133 ILE 479 A LYS 480 n 134 LYS 480 A GLU 481 n 135 GLU 481 A ALA 482 n 136 ALA 482 A LEU 483 n 137 LEU 483 A n 138 484 A author_and_software_defined_assembly PISA 1 monomeric author_and_software_defined_assembly PISA 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 B N ILE 389 A N ILE 43 B O ARG 401 A O ARG 55 B N GLU 410 A N GLU 64 A O VAL 408 B O VAL 62 A O ARG 401 B O ARG 55 A N ILE 389 B N ILE 43 B O ASP 433 A O ASP 87 B N HIS 430 A N HIS 84 B O THR 420 A O THR 74 B N LEU 417 A N LEU 71 B N GLU 410 A N GLU 64 A O VAL 408 B O VAL 62 A N THR 411 B N THR 65 A O ASN 423 B O ASN 77 A N HIS 430 B N HIS 84 A O ASP 433 B O ASP 87 1 B GLY 347 A GLY 1 1 Y 1 B ASP 348 A ASP 2 1 Y 1 B ILE 349 A ILE 3 1 Y 1 B THR 350 A THR 4 1 Y 1 B LEU 483 A LEU 137 1 Y 1 B ASN 484 A ASN 138 1 Y 1 A GLY 347 B GLY 1 1 Y 1 A ASP 348 B ASP 2 1 Y 1 A ILE 349 B ILE 3 1 Y 1 A THR 350 B THR 4 1 Y 1 A GLY 392 B GLY 46 1 Y 1 A ASN 393 B ASN 47 1 Y 1 A HIS 394 B HIS 48 1 Y 1 A ASN 395 B ASN 49 1 Y 1 A SER 396 B SER 50 1 Y 1 A LYS 397 B LYS 51 1 Y 1 A ASN 484 B ASN 138 1 Y 1 A A HE2 HG1 HIS THR 374 420 1.33 1 B A OE2 HH22 GLU ARG 476 361 1.56 1_555 2_455 122.160 56.4504 26.430 0.2400 0.2059 0.2084 2.12 29.158 1043 14657 7.1200 91.7900 1.000 1.000 0.8290 0.2500 1 1.350 MOLECULAR REPLACEMENT 23.5800 0.9000 1.1100 PDB ENTRY 3U1U ML FLAT BULK SOLVENT MODEL 2.12 29.158 71 2210 30 0 2109 0.004 2176 0.905 2911 0.052 313 0.003 368 15.386 827 0.3084 0.2546 2.2288 135 1928 2063 7 92.0000 0.2912 0.2236 2.3684 156 1933 2089 7 94.0000 0.2568 0.2258 2.5511 155 1943 2098 7 94.0000 0.2690 0.2286 2.8077 151 1964 2115 7 93.0000 0.2678 0.2143 3.2135 160 1911 2071 7 92.0000 0.2294 0.1976 4.0470 145 1935 2080 7 90.0000 0.2043 0.1883 29.158 141 2000 2141 7 88.0000 2.12 50.00 4L1P 14681 0.085 0.843 1 13.400 4.600 91.900 0.624 2.12 2.160 715 1.269 1 4.500 94.100 0.523 2.160 2.200 739 1.352 1 4.600 94.900 0.465 2.200 2.240 746 1.206 1 4.500 93.200 0.376 2.240 2.280 721 1.105 1 4.700 93.600 0.332 2.280 2.330 734 1.003 1 4.700 94.000 0.323 2.330 2.390 740 1.039 1 4.600 93.100 0.271 2.390 2.450 735 0.881 1 4.700 93.400 0.220 2.450 2.510 731 0.747 1 4.800 94.300 0.221 2.510 2.590 741 0.890 1 4.700 92.900 0.196 2.590 2.670 724 0.778 1 4.800 95.300 0.180 2.670 2.770 749 0.802 1 4.800 92.400 0.143 2.770 2.880 720 0.687 1 4.800 92.300 0.130 2.880 3.010 731 0.649 1 4.800 91.500 0.109 3.010 3.170 729 0.597 1 4.600 91.700 0.091 3.170 3.370 750 0.639 1 4.600 92.100 0.084 3.370 3.620 704 0.677 1 4.600 89.100 0.073 3.620 3.990 731 0.655 1 4.500 89.300 0.056 3.990 4.570 724 0.651 1 4.300 88.300 0.053 4.570 5.750 735 0.590 1 4.400 88.100 0.036 5.750 50.000 782 0.661 1 4.700 85.700 data reduction Zbyszek Otwinowski hkl@hkl-xray.com http://www.hkl-xray.com/ DENZO program data scaling Zbyszek Otwinowski hkl@hkl-xray.com http://www.hkl-xray.com/ SCALEPACK package phasing Randy J. Read cimr-phaser@lists.cam.ac.uk Wed Jun 29 17:49:14 2011 (svn ) http://www-structmed.cimr.cam.ac.uk/phaser/ PHASER program 2.3.0 refinement Paul D. Adams PDAdams@lbl.gov C++ http://www.phenix-online.org/ PHENIX package 1.8.2_1309 data extraction PDB deposit@deposit.rcsb.org April 22, 2011 C++ http://sw-tools.pdb.org/apps/PDB_EXTRACT/ PDB_EXTRACT package 3.11 data scaling HKL-2000 Crystal Structure of Human Rtf1 Plus3 domain 1 N N 1 N N 2 N N 2 N N 2 N N 2 N N 2 N N 3 N N 3 N N B LEU 355 A LEU 9 HELX_P B ASN 360 A ASN 14 1 1 6 B ARG 361 A ARG 15 HELX_P B ARG 363 A ARG 17 5 2 3 B SER 365 A SER 19 HELX_P B CYS 373 A CYS 27 1 3 9 B PHE 377 A PHE 31 HELX_P B THR 383 A THR 37 1 4 7 B GLU 440 A GLU 94 HELX_P B VAL 442 A VAL 96 5 5 3 B THR 448 A THR 102 HELX_P B GLY 463 A GLY 117 1 6 16 B THR 468 A THR 122 HELX_P B ALA 482 A ALA 136 1 7 15 A LEU 355 B LEU 9 HELX_P A ASN 360 B ASN 14 1 8 6 A ARG 361 B ARG 15 HELX_P A ARG 363 B ARG 17 5 9 3 A SER 365 B SER 19 HELX_P A CYS 373 B CYS 27 1 10 9 A PHE 377 B PHE 31 HELX_P A THR 383 B THR 37 1 11 7 A GLU 440 B GLU 94 HELX_P A VAL 442 B VAL 96 5 12 3 A THR 448 B THR 102 HELX_P A GLY 463 B GLY 117 1 13 16 A THR 468 B THR 122 HELX_P A ALA 482 B ALA 136 1 14 15 TRANSCRIPTION Tutor, Plus3, Peptide binding protein, Spt5 CTR binding, Transcription, Paf1 complex, Rtf1, ORF association region, Chromatin RTF1_HUMAN UNP 1 353 Q92541 VSLPEELNRVRLSRHKLERWCHMPFFAKTVTGCFVRIGIGNHNSKPVYRVAEITGVVETAKVYQLGGTRTNKGLQLRHGN DQRVFRLEFVSNQEFTESEFMKWKEAMFSAGMQLPTLDEINKKELSIKEALN 353 484 4L1P 353 484 Q92541 B 1 7 138 353 484 4L1P 353 484 Q92541 A 1 7 138 1 expression tag GLY 347 4L1P B Q92541 UNP 1 1 expression tag ASP 348 4L1P B Q92541 UNP 2 1 expression tag ILE 349 4L1P B Q92541 UNP 3 1 expression tag THR 350 4L1P B Q92541 UNP 4 1 expression tag HIS 351 4L1P B Q92541 UNP 5 1 expression tag MET 352 4L1P B Q92541 UNP 6 2 expression tag GLY 347 4L1P A Q92541 UNP 1 2 expression tag ASP 348 4L1P A Q92541 UNP 2 2 expression tag ILE 349 4L1P A Q92541 UNP 3 2 expression tag THR 350 4L1P A Q92541 UNP 4 2 expression tag HIS 351 4L1P A Q92541 UNP 5 2 expression tag MET 352 4L1P A Q92541 UNP 6 4 6 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel B PHE 386 A PHE 40 B ASN 393 A ASN 47 B PRO 398 A PRO 52 B LEU 417 A LEU 71 A TYR 400 B TYR 54 A LEU 417 B LEU 71 A PHE 386 B PHE 40 A GLY 390 B GLY 44 B ASP 433 A ASP 87 B ARG 438 A ARG 92 B THR 420 A THR 74 B HIS 430 A HIS 84 B PRO 398 A PRO 52 B LEU 417 A LEU 71 A TYR 400 B TYR 54 A LEU 417 B LEU 71 A THR 420 B THR 74 A HIS 430 B HIS 84 A ASP 433 B ASP 87 A ARG 438 B ARG 92 BINDING SITE FOR RESIDUE GOL B 501 B GOL 501 Software 5 BINDING SITE FOR RESIDUE GOL B 502 B GOL 502 Software 4 BINDING SITE FOR RESIDUE GOL B 503 B GOL 503 Software 3 BINDING SITE FOR RESIDUE GOL B 504 B GOL 504 Software 1 BINDING SITE FOR RESIDUE GOL A 501 A GOL 501 Software 4 B ARG 366 A ARG 20 5 1_555 B SER 443 A SER 97 5 1_555 B ASN 444 A ASN 98 5 1_555 B GLN 445 A GLN 99 5 1_555 B GOL 502 D GOL 5 1_555 B TYR 400 A TYR 54 4 1_555 B PHE 441 A PHE 95 4 1_555 B VAL 442 A VAL 96 4 1_555 B GOL 501 C GOL 4 1_555 B GLY 384 A GLY 38 3 1_555 B GLU 404 A GLU 58 3 1_555 B GLU 471 A GLU 125 3 1_555 B LYS 480 A LYS 134 1 1_555 A ARG 366 B ARG 20 4 1_555 A SER 443 B SER 97 4 1_555 A ASN 444 B ASN 98 4 1_555 A HOH 627 I HOH 4 1_555 19 P 21 21 21