0.029730
0.000000
0.000000
0.000000
0.014700
0.000000
0.000000
0.000000
0.008549
0.000000
0.000000
0.000000
Wier, A.D.
Heroux, A.
VanDemark, A.P.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.000
90.000
90.000
33.636
68.025
116.972
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C3 H8 O3
92.094
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
C
N
138
N
O
N
139
N
C
N
140
N
O
N
141
N
C
N
142
N
O
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
N
N
152
S
C
N
153
N
C
N
154
N
O
N
155
N
C
Y
156
N
C
Y
157
N
N
Y
158
N
C
Y
159
N
C
Y
160
N
N
N
161
N
O
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
O
N
173
N
H
N
174
N
H
N
175
N
N
N
176
S
C
N
177
N
C
N
178
N
O
N
179
S
C
N
180
N
C
N
181
N
C
N
182
N
C
N
183
N
O
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
N
N
198
S
C
N
199
N
C
N
200
N
O
N
201
N
C
N
202
N
C
N
203
N
C
N
204
N
C
N
205
N
O
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
N
N
220
S
C
N
221
N
C
N
222
N
O
N
223
N
C
N
224
N
C
N
225
N
C
N
226
N
C
N
227
N
N
N
228
N
O
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
N
N
245
S
C
N
246
N
C
N
247
N
O
N
248
N
C
N
249
N
C
N
250
N
S
N
251
N
C
N
252
N
O
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
N
N
265
S
C
N
266
N
C
N
267
N
O
N
268
N
C
Y
269
N
C
Y
270
N
C
Y
271
N
C
Y
272
N
C
Y
273
N
C
Y
274
N
C
N
275
N
O
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
N
N
288
S
C
N
289
N
C
N
290
N
O
N
291
N
C
N
292
N
C
N
293
N
C
N
294
N
O
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
N
N
305
S
C
N
306
N
C
N
307
N
O
N
308
N
C
N
309
N
O
N
310
N
O
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
N
N
319
S
C
N
320
N
C
N
321
N
O
N
322
R
C
N
323
N
O
N
324
N
C
N
325
N
O
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
N
N
336
S
C
N
337
N
C
N
338
N
O
N
339
N
C
Y
340
N
C
Y
341
N
C
Y
342
N
C
Y
343
N
N
Y
344
N
C
Y
345
N
C
Y
346
N
C
Y
347
N
C
Y
348
N
C
N
349
N
O
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
N
N
363
S
C
N
364
N
C
N
365
N
O
N
366
N
C
Y
367
N
C
Y
368
N
C
Y
369
N
C
Y
370
N
C
Y
371
N
C
Y
372
N
C
N
373
N
O
N
374
N
O
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
N
N
387
S
C
N
388
N
C
N
389
N
O
N
390
N
C
N
391
N
C
N
392
N
C
N
393
N
O
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
doub
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
Y
153
N
sing
Y
154
N
doub
Y
155
N
doub
N
156
N
sing
Y
157
N
sing
N
158
N
sing
Y
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
doub
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
doub
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
doub
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
doub
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
doub
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
Y
261
N
doub
Y
262
N
sing
Y
263
N
sing
N
264
N
sing
Y
265
N
doub
N
266
N
sing
Y
267
N
doub
N
268
N
sing
Y
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
doub
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
doub
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
doub
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
doub
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
Y
330
N
doub
Y
331
N
sing
Y
332
N
sing
N
333
N
sing
Y
334
N
doub
Y
335
N
sing
Y
336
N
sing
N
337
N
sing
Y
338
N
sing
Y
339
N
doub
N
340
N
sing
Y
341
N
doub
N
342
N
sing
Y
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
doub
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
Y
358
N
doub
Y
359
N
sing
Y
360
N
sing
N
361
N
sing
Y
362
N
doub
N
363
N
sing
Y
364
N
doub
N
365
N
sing
Y
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
doub
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
US
Proc.Natl.Acad.Sci.USA
PNASA6
0040
0027-8424
110
17290
17295
10.1073/pnas.1314754110
24101474
Structural basis for Spt5-mediated recruitment of the Paf1 complex to chromatin.
2013
10.2210/pdb4l1p/pdb
pdb_00004l1p
100
1
IMAGE PLATE DETECTOR
IMAGE PLATE
2012-05-30
RIGAKU RAXIS IV++
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU FR-E DW
15920.326
RNA polymerase-associated protein RTF1 homolog
UNP residues 353-484
2
man
polymer
92.094
GLYCEROL
5
syn
non-polymer
18.015
water
71
nat
water
no
no
GDITHMVSLPEELNRVRLSRHKLERWCHMPFFAKTVTGCFVRIGIGNHNSKPVYRVAEITGVVETAKVYQLGGTRTNKGL
QLRHGNDQRVFRLEFVSNQEFTESEFMKWKEAMFSAGMQLPTLDEINKKELSIKEALN
GDITHMVSLPEELNRVRLSRHKLERWCHMPFFAKTVTGCFVRIGIGNHNSKPVYRVAEITGVVETAKVYQLGGTRTNKGL
QLRHGNDQRVFRLEFVSNQEFTESEFMKWKEAMFSAGMQLPTLDEINKKELSIKEALN
B,A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
sample
KIAA0252, RTF1
9606
Homo sapiens
469008
Escherichia coli
BL21(DE3) Codon+RILP
plasmid
pLC3
1
2.10
41.47
VAPOR DIFFUSION, SITTING DROP
5.5
Trisodium citrate, PEG 3000, pH 5.5, vapor diffusion, sitting drop, temperature 293K
293
software
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_ref_seq_dif
struct_site
repository
Initial release
Database references
Database references
Refinement description
Data collection
Database references
Derived calculations
Refinement description
1
0
2013-10-02
1
1
2013-10-23
1
2
2013-11-20
1
3
2017-11-15
1
4
2023-09-20
_software.classification
_software.name
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
RCSB
2013-06-03
REL
REL
GOL
GLYCEROL
HOH
water
3U1U
PDB ENTRY 3U1U
PDB
experimental model
GOL
2
2
GOL
GOL
501
B
GOL
3
2
GOL
GOL
502
B
GOL
5
2
GOL
GOL
503
B
GOL
6
2
GOL
GOL
504
B
GOL
1
2
GOL
GOL
501
A
HOH
3
3
HOH
HOH
601
B
HOH
5
3
HOH
HOH
602
B
HOH
6
3
HOH
HOH
603
B
HOH
8
3
HOH
HOH
604
B
HOH
10
3
HOH
HOH
605
B
HOH
13
3
HOH
HOH
606
B
HOH
14
3
HOH
HOH
607
B
HOH
15
3
HOH
HOH
608
B
HOH
16
3
HOH
HOH
609
B
HOH
18
3
HOH
HOH
610
B
HOH
19
3
HOH
HOH
611
B
HOH
22
3
HOH
HOH
612
B
HOH
23
3
HOH
HOH
613
B
HOH
25
3
HOH
HOH
614
B
HOH
27
3
HOH
HOH
615
B
HOH
28
3
HOH
HOH
616
B
HOH
29
3
HOH
HOH
617
B
HOH
35
3
HOH
HOH
618
B
HOH
36
3
HOH
HOH
619
B
HOH
38
3
HOH
HOH
620
B
HOH
39
3
HOH
HOH
621
B
HOH
41
3
HOH
HOH
622
B
HOH
44
3
HOH
HOH
623
B
HOH
46
3
HOH
HOH
624
B
HOH
47
3
HOH
HOH
625
B
HOH
50
3
HOH
HOH
626
B
HOH
52
3
HOH
HOH
627
B
HOH
53
3
HOH
HOH
628
B
HOH
54
3
HOH
HOH
629
B
HOH
55
3
HOH
HOH
630
B
HOH
59
3
HOH
HOH
631
B
HOH
60
3
HOH
HOH
632
B
HOH
62
3
HOH
HOH
633
B
HOH
63
3
HOH
HOH
634
B
HOH
69
3
HOH
HOH
635
B
HOH
70
3
HOH
HOH
636
B
HOH
71
3
HOH
HOH
637
B
HOH
72
3
HOH
HOH
638
B
HOH
74
3
HOH
HOH
639
B
HOH
75
3
HOH
HOH
640
B
HOH
76
3
HOH
HOH
641
B
HOH
1
3
HOH
HOH
601
A
HOH
2
3
HOH
HOH
602
A
HOH
4
3
HOH
HOH
603
A
HOH
7
3
HOH
HOH
604
A
HOH
9
3
HOH
HOH
605
A
HOH
11
3
HOH
HOH
606
A
HOH
12
3
HOH
HOH
607
A
HOH
17
3
HOH
HOH
608
A
HOH
20
3
HOH
HOH
609
A
HOH
21
3
HOH
HOH
610
A
HOH
24
3
HOH
HOH
611
A
HOH
26
3
HOH
HOH
612
A
HOH
31
3
HOH
HOH
613
A
HOH
32
3
HOH
HOH
614
A
HOH
33
3
HOH
HOH
615
A
HOH
34
3
HOH
HOH
616
A
HOH
37
3
HOH
HOH
617
A
HOH
40
3
HOH
HOH
618
A
HOH
42
3
HOH
HOH
619
A
HOH
45
3
HOH
HOH
620
A
HOH
48
3
HOH
HOH
621
A
HOH
49
3
HOH
HOH
622
A
HOH
51
3
HOH
HOH
623
A
HOH
56
3
HOH
HOH
624
A
HOH
57
3
HOH
HOH
625
A
HOH
66
3
HOH
HOH
626
A
HOH
73
3
HOH
HOH
627
A
HOH
77
3
HOH
HOH
628
A
HOH
78
3
HOH
HOH
629
A
HOH
79
3
HOH
HOH
630
A
2.500
2.500
29.160
29.160
Phaser MODE: MR_AUTO
n
1
347
B
n
2
348
B
n
3
349
B
n
4
350
B
HIS
351
n
5
HIS
351
B
MET
352
n
6
MET
352
B
VAL
353
n
7
VAL
353
B
SER
354
n
8
SER
354
B
LEU
355
n
9
LEU
355
B
PRO
356
n
10
PRO
356
B
GLU
357
n
11
GLU
357
B
GLU
358
n
12
GLU
358
B
LEU
359
n
13
LEU
359
B
ASN
360
n
14
ASN
360
B
ARG
361
n
15
ARG
361
B
VAL
362
n
16
VAL
362
B
ARG
363
n
17
ARG
363
B
LEU
364
n
18
LEU
364
B
SER
365
n
19
SER
365
B
ARG
366
n
20
ARG
366
B
HIS
367
n
21
HIS
367
B
LYS
368
n
22
LYS
368
B
LEU
369
n
23
LEU
369
B
GLU
370
n
24
GLU
370
B
ARG
371
n
25
ARG
371
B
TRP
372
n
26
TRP
372
B
CYS
373
n
27
CYS
373
B
HIS
374
n
28
HIS
374
B
MET
375
n
29
MET
375
B
PRO
376
n
30
PRO
376
B
PHE
377
n
31
PHE
377
B
PHE
378
n
32
PHE
378
B
ALA
379
n
33
ALA
379
B
LYS
380
n
34
LYS
380
B
THR
381
n
35
THR
381
B
VAL
382
n
36
VAL
382
B
THR
383
n
37
THR
383
B
GLY
384
n
38
GLY
384
B
CYS
385
n
39
CYS
385
B
PHE
386
n
40
PHE
386
B
VAL
387
n
41
VAL
387
B
ARG
388
n
42
ARG
388
B
ILE
389
n
43
ILE
389
B
GLY
390
n
44
GLY
390
B
ILE
391
n
45
ILE
391
B
GLY
392
n
46
GLY
392
B
ASN
393
n
47
ASN
393
B
HIS
394
n
48
HIS
394
B
ASN
395
n
49
ASN
395
B
SER
396
n
50
SER
396
B
LYS
397
n
51
LYS
397
B
PRO
398
n
52
PRO
398
B
VAL
399
n
53
VAL
399
B
TYR
400
n
54
TYR
400
B
ARG
401
n
55
ARG
401
B
VAL
402
n
56
VAL
402
B
ALA
403
n
57
ALA
403
B
GLU
404
n
58
GLU
404
B
ILE
405
n
59
ILE
405
B
THR
406
n
60
THR
406
B
GLY
407
n
61
GLY
407
B
VAL
408
n
62
VAL
408
B
VAL
409
n
63
VAL
409
B
GLU
410
n
64
GLU
410
B
THR
411
n
65
THR
411
B
ALA
412
n
66
ALA
412
B
LYS
413
n
67
LYS
413
B
VAL
414
n
68
VAL
414
B
TYR
415
n
69
TYR
415
B
GLN
416
n
70
GLN
416
B
LEU
417
n
71
LEU
417
B
GLY
418
n
72
GLY
418
B
GLY
419
n
73
GLY
419
B
THR
420
n
74
THR
420
B
ARG
421
n
75
ARG
421
B
THR
422
n
76
THR
422
B
ASN
423
n
77
ASN
423
B
LYS
424
n
78
LYS
424
B
GLY
425
n
79
GLY
425
B
LEU
426
n
80
LEU
426
B
GLN
427
n
81
GLN
427
B
LEU
428
n
82
LEU
428
B
ARG
429
n
83
ARG
429
B
HIS
430
n
84
HIS
430
B
GLY
431
n
85
GLY
431
B
ASN
432
n
86
ASN
432
B
ASP
433
n
87
ASP
433
B
GLN
434
n
88
GLN
434
B
ARG
435
n
89
ARG
435
B
VAL
436
n
90
VAL
436
B
PHE
437
n
91
PHE
437
B
ARG
438
n
92
ARG
438
B
LEU
439
n
93
LEU
439
B
GLU
440
n
94
GLU
440
B
PHE
441
n
95
PHE
441
B
VAL
442
n
96
VAL
442
B
SER
443
n
97
SER
443
B
ASN
444
n
98
ASN
444
B
GLN
445
n
99
GLN
445
B
GLU
446
n
100
GLU
446
B
PHE
447
n
101
PHE
447
B
THR
448
n
102
THR
448
B
GLU
449
n
103
GLU
449
B
SER
450
n
104
SER
450
B
GLU
451
n
105
GLU
451
B
PHE
452
n
106
PHE
452
B
MET
453
n
107
MET
453
B
LYS
454
n
108
LYS
454
B
TRP
455
n
109
TRP
455
B
LYS
456
n
110
LYS
456
B
GLU
457
n
111
GLU
457
B
ALA
458
n
112
ALA
458
B
MET
459
n
113
MET
459
B
PHE
460
n
114
PHE
460
B
SER
461
n
115
SER
461
B
ALA
462
n
116
ALA
462
B
GLY
463
n
117
GLY
463
B
MET
464
n
118
MET
464
B
GLN
465
n
119
GLN
465
B
LEU
466
n
120
LEU
466
B
PRO
467
n
121
PRO
467
B
THR
468
n
122
THR
468
B
LEU
469
n
123
LEU
469
B
ASP
470
n
124
ASP
470
B
GLU
471
n
125
GLU
471
B
ILE
472
n
126
ILE
472
B
ASN
473
n
127
ASN
473
B
LYS
474
n
128
LYS
474
B
LYS
475
n
129
LYS
475
B
GLU
476
n
130
GLU
476
B
LEU
477
n
131
LEU
477
B
SER
478
n
132
SER
478
B
ILE
479
n
133
ILE
479
B
LYS
480
n
134
LYS
480
B
GLU
481
n
135
GLU
481
B
ALA
482
n
136
ALA
482
B
n
137
483
B
n
138
484
B
n
1
347
A
n
2
348
A
n
3
349
A
n
4
350
A
HIS
351
n
5
HIS
351
A
MET
352
n
6
MET
352
A
VAL
353
n
7
VAL
353
A
SER
354
n
8
SER
354
A
LEU
355
n
9
LEU
355
A
PRO
356
n
10
PRO
356
A
GLU
357
n
11
GLU
357
A
GLU
358
n
12
GLU
358
A
LEU
359
n
13
LEU
359
A
ASN
360
n
14
ASN
360
A
ARG
361
n
15
ARG
361
A
VAL
362
n
16
VAL
362
A
ARG
363
n
17
ARG
363
A
LEU
364
n
18
LEU
364
A
SER
365
n
19
SER
365
A
ARG
366
n
20
ARG
366
A
HIS
367
n
21
HIS
367
A
LYS
368
n
22
LYS
368
A
LEU
369
n
23
LEU
369
A
GLU
370
n
24
GLU
370
A
ARG
371
n
25
ARG
371
A
TRP
372
n
26
TRP
372
A
CYS
373
n
27
CYS
373
A
HIS
374
n
28
HIS
374
A
MET
375
n
29
MET
375
A
PRO
376
n
30
PRO
376
A
PHE
377
n
31
PHE
377
A
PHE
378
n
32
PHE
378
A
ALA
379
n
33
ALA
379
A
LYS
380
n
34
LYS
380
A
THR
381
n
35
THR
381
A
VAL
382
n
36
VAL
382
A
THR
383
n
37
THR
383
A
GLY
384
n
38
GLY
384
A
CYS
385
n
39
CYS
385
A
PHE
386
n
40
PHE
386
A
VAL
387
n
41
VAL
387
A
ARG
388
n
42
ARG
388
A
ILE
389
n
43
ILE
389
A
GLY
390
n
44
GLY
390
A
ILE
391
n
45
ILE
391
A
n
46
392
A
n
47
393
A
n
48
394
A
n
49
395
A
n
50
396
A
n
51
397
A
PRO
398
n
52
PRO
398
A
VAL
399
n
53
VAL
399
A
TYR
400
n
54
TYR
400
A
ARG
401
n
55
ARG
401
A
VAL
402
n
56
VAL
402
A
ALA
403
n
57
ALA
403
A
GLU
404
n
58
GLU
404
A
ILE
405
n
59
ILE
405
A
THR
406
n
60
THR
406
A
GLY
407
n
61
GLY
407
A
VAL
408
n
62
VAL
408
A
VAL
409
n
63
VAL
409
A
GLU
410
n
64
GLU
410
A
THR
411
n
65
THR
411
A
ALA
412
n
66
ALA
412
A
LYS
413
n
67
LYS
413
A
VAL
414
n
68
VAL
414
A
TYR
415
n
69
TYR
415
A
GLN
416
n
70
GLN
416
A
LEU
417
n
71
LEU
417
A
GLY
418
n
72
GLY
418
A
GLY
419
n
73
GLY
419
A
THR
420
n
74
THR
420
A
ARG
421
n
75
ARG
421
A
THR
422
n
76
THR
422
A
ASN
423
n
77
ASN
423
A
LYS
424
n
78
LYS
424
A
GLY
425
n
79
GLY
425
A
LEU
426
n
80
LEU
426
A
GLN
427
n
81
GLN
427
A
LEU
428
n
82
LEU
428
A
ARG
429
n
83
ARG
429
A
HIS
430
n
84
HIS
430
A
GLY
431
n
85
GLY
431
A
ASN
432
n
86
ASN
432
A
ASP
433
n
87
ASP
433
A
GLN
434
n
88
GLN
434
A
ARG
435
n
89
ARG
435
A
VAL
436
n
90
VAL
436
A
PHE
437
n
91
PHE
437
A
ARG
438
n
92
ARG
438
A
LEU
439
n
93
LEU
439
A
GLU
440
n
94
GLU
440
A
PHE
441
n
95
PHE
441
A
VAL
442
n
96
VAL
442
A
SER
443
n
97
SER
443
A
ASN
444
n
98
ASN
444
A
GLN
445
n
99
GLN
445
A
GLU
446
n
100
GLU
446
A
PHE
447
n
101
PHE
447
A
THR
448
n
102
THR
448
A
GLU
449
n
103
GLU
449
A
SER
450
n
104
SER
450
A
GLU
451
n
105
GLU
451
A
PHE
452
n
106
PHE
452
A
MET
453
n
107
MET
453
A
LYS
454
n
108
LYS
454
A
TRP
455
n
109
TRP
455
A
LYS
456
n
110
LYS
456
A
GLU
457
n
111
GLU
457
A
ALA
458
n
112
ALA
458
A
MET
459
n
113
MET
459
A
PHE
460
n
114
PHE
460
A
SER
461
n
115
SER
461
A
ALA
462
n
116
ALA
462
A
GLY
463
n
117
GLY
463
A
MET
464
n
118
MET
464
A
GLN
465
n
119
GLN
465
A
LEU
466
n
120
LEU
466
A
PRO
467
n
121
PRO
467
A
THR
468
n
122
THR
468
A
LEU
469
n
123
LEU
469
A
ASP
470
n
124
ASP
470
A
GLU
471
n
125
GLU
471
A
ILE
472
n
126
ILE
472
A
ASN
473
n
127
ASN
473
A
LYS
474
n
128
LYS
474
A
LYS
475
n
129
LYS
475
A
GLU
476
n
130
GLU
476
A
LEU
477
n
131
LEU
477
A
SER
478
n
132
SER
478
A
ILE
479
n
133
ILE
479
A
LYS
480
n
134
LYS
480
A
GLU
481
n
135
GLU
481
A
ALA
482
n
136
ALA
482
A
LEU
483
n
137
LEU
483
A
n
138
484
A
author_and_software_defined_assembly
PISA
1
monomeric
author_and_software_defined_assembly
PISA
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
B
N
ILE
389
A
N
ILE
43
B
O
ARG
401
A
O
ARG
55
B
N
GLU
410
A
N
GLU
64
A
O
VAL
408
B
O
VAL
62
A
O
ARG
401
B
O
ARG
55
A
N
ILE
389
B
N
ILE
43
B
O
ASP
433
A
O
ASP
87
B
N
HIS
430
A
N
HIS
84
B
O
THR
420
A
O
THR
74
B
N
LEU
417
A
N
LEU
71
B
N
GLU
410
A
N
GLU
64
A
O
VAL
408
B
O
VAL
62
A
N
THR
411
B
N
THR
65
A
O
ASN
423
B
O
ASN
77
A
N
HIS
430
B
N
HIS
84
A
O
ASP
433
B
O
ASP
87
1
B
GLY
347
A
GLY
1
1
Y
1
B
ASP
348
A
ASP
2
1
Y
1
B
ILE
349
A
ILE
3
1
Y
1
B
THR
350
A
THR
4
1
Y
1
B
LEU
483
A
LEU
137
1
Y
1
B
ASN
484
A
ASN
138
1
Y
1
A
GLY
347
B
GLY
1
1
Y
1
A
ASP
348
B
ASP
2
1
Y
1
A
ILE
349
B
ILE
3
1
Y
1
A
THR
350
B
THR
4
1
Y
1
A
GLY
392
B
GLY
46
1
Y
1
A
ASN
393
B
ASN
47
1
Y
1
A
HIS
394
B
HIS
48
1
Y
1
A
ASN
395
B
ASN
49
1
Y
1
A
SER
396
B
SER
50
1
Y
1
A
LYS
397
B
LYS
51
1
Y
1
A
ASN
484
B
ASN
138
1
Y
1
A
A
HE2
HG1
HIS
THR
374
420
1.33
1
B
A
OE2
HH22
GLU
ARG
476
361
1.56
1_555
2_455
122.160
56.4504
26.430
0.2400
0.2059
0.2084
2.12
29.158
1043
14657
7.1200
91.7900
1.000
1.000
0.8290
0.2500
1
1.350
MOLECULAR REPLACEMENT
23.5800
0.9000
1.1100
PDB ENTRY 3U1U
ML
FLAT BULK SOLVENT MODEL
2.12
29.158
71
2210
30
0
2109
0.004
2176
0.905
2911
0.052
313
0.003
368
15.386
827
0.3084
0.2546
2.2288
135
1928
2063
7
92.0000
0.2912
0.2236
2.3684
156
1933
2089
7
94.0000
0.2568
0.2258
2.5511
155
1943
2098
7
94.0000
0.2690
0.2286
2.8077
151
1964
2115
7
93.0000
0.2678
0.2143
3.2135
160
1911
2071
7
92.0000
0.2294
0.1976
4.0470
145
1935
2080
7
90.0000
0.2043
0.1883
29.158
141
2000
2141
7
88.0000
2.12
50.00
4L1P
14681
0.085
0.843
1
13.400
4.600
91.900
0.624
2.12
2.160
715
1.269
1
4.500
94.100
0.523
2.160
2.200
739
1.352
1
4.600
94.900
0.465
2.200
2.240
746
1.206
1
4.500
93.200
0.376
2.240
2.280
721
1.105
1
4.700
93.600
0.332
2.280
2.330
734
1.003
1
4.700
94.000
0.323
2.330
2.390
740
1.039
1
4.600
93.100
0.271
2.390
2.450
735
0.881
1
4.700
93.400
0.220
2.450
2.510
731
0.747
1
4.800
94.300
0.221
2.510
2.590
741
0.890
1
4.700
92.900
0.196
2.590
2.670
724
0.778
1
4.800
95.300
0.180
2.670
2.770
749
0.802
1
4.800
92.400
0.143
2.770
2.880
720
0.687
1
4.800
92.300
0.130
2.880
3.010
731
0.649
1
4.800
91.500
0.109
3.010
3.170
729
0.597
1
4.600
91.700
0.091
3.170
3.370
750
0.639
1
4.600
92.100
0.084
3.370
3.620
704
0.677
1
4.600
89.100
0.073
3.620
3.990
731
0.655
1
4.500
89.300
0.056
3.990
4.570
724
0.651
1
4.300
88.300
0.053
4.570
5.750
735
0.590
1
4.400
88.100
0.036
5.750
50.000
782
0.661
1
4.700
85.700
data reduction
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
DENZO
program
data scaling
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
SCALEPACK
package
phasing
Randy J. Read
cimr-phaser@lists.cam.ac.uk
Wed Jun 29 17:49:14 2011 (svn )
http://www-structmed.cimr.cam.ac.uk/phaser/
PHASER
program
2.3.0
refinement
Paul D. Adams
PDAdams@lbl.gov
C++
http://www.phenix-online.org/
PHENIX
package
1.8.2_1309
data extraction
PDB
deposit@deposit.rcsb.org
April 22, 2011
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.11
data scaling
HKL-2000
Crystal Structure of Human Rtf1 Plus3 domain
1
N
N
1
N
N
2
N
N
2
N
N
2
N
N
2
N
N
2
N
N
3
N
N
3
N
N
B
LEU
355
A
LEU
9
HELX_P
B
ASN
360
A
ASN
14
1
1
6
B
ARG
361
A
ARG
15
HELX_P
B
ARG
363
A
ARG
17
5
2
3
B
SER
365
A
SER
19
HELX_P
B
CYS
373
A
CYS
27
1
3
9
B
PHE
377
A
PHE
31
HELX_P
B
THR
383
A
THR
37
1
4
7
B
GLU
440
A
GLU
94
HELX_P
B
VAL
442
A
VAL
96
5
5
3
B
THR
448
A
THR
102
HELX_P
B
GLY
463
A
GLY
117
1
6
16
B
THR
468
A
THR
122
HELX_P
B
ALA
482
A
ALA
136
1
7
15
A
LEU
355
B
LEU
9
HELX_P
A
ASN
360
B
ASN
14
1
8
6
A
ARG
361
B
ARG
15
HELX_P
A
ARG
363
B
ARG
17
5
9
3
A
SER
365
B
SER
19
HELX_P
A
CYS
373
B
CYS
27
1
10
9
A
PHE
377
B
PHE
31
HELX_P
A
THR
383
B
THR
37
1
11
7
A
GLU
440
B
GLU
94
HELX_P
A
VAL
442
B
VAL
96
5
12
3
A
THR
448
B
THR
102
HELX_P
A
GLY
463
B
GLY
117
1
13
16
A
THR
468
B
THR
122
HELX_P
A
ALA
482
B
ALA
136
1
14
15
TRANSCRIPTION
Tutor, Plus3, Peptide binding protein, Spt5 CTR binding, Transcription, Paf1 complex, Rtf1, ORF association region, Chromatin
RTF1_HUMAN
UNP
1
353
Q92541
VSLPEELNRVRLSRHKLERWCHMPFFAKTVTGCFVRIGIGNHNSKPVYRVAEITGVVETAKVYQLGGTRTNKGLQLRHGN
DQRVFRLEFVSNQEFTESEFMKWKEAMFSAGMQLPTLDEINKKELSIKEALN
353
484
4L1P
353
484
Q92541
B
1
7
138
353
484
4L1P
353
484
Q92541
A
1
7
138
1
expression tag
GLY
347
4L1P
B
Q92541
UNP
1
1
expression tag
ASP
348
4L1P
B
Q92541
UNP
2
1
expression tag
ILE
349
4L1P
B
Q92541
UNP
3
1
expression tag
THR
350
4L1P
B
Q92541
UNP
4
1
expression tag
HIS
351
4L1P
B
Q92541
UNP
5
1
expression tag
MET
352
4L1P
B
Q92541
UNP
6
2
expression tag
GLY
347
4L1P
A
Q92541
UNP
1
2
expression tag
ASP
348
4L1P
A
Q92541
UNP
2
2
expression tag
ILE
349
4L1P
A
Q92541
UNP
3
2
expression tag
THR
350
4L1P
A
Q92541
UNP
4
2
expression tag
HIS
351
4L1P
A
Q92541
UNP
5
2
expression tag
MET
352
4L1P
A
Q92541
UNP
6
4
6
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
B
PHE
386
A
PHE
40
B
ASN
393
A
ASN
47
B
PRO
398
A
PRO
52
B
LEU
417
A
LEU
71
A
TYR
400
B
TYR
54
A
LEU
417
B
LEU
71
A
PHE
386
B
PHE
40
A
GLY
390
B
GLY
44
B
ASP
433
A
ASP
87
B
ARG
438
A
ARG
92
B
THR
420
A
THR
74
B
HIS
430
A
HIS
84
B
PRO
398
A
PRO
52
B
LEU
417
A
LEU
71
A
TYR
400
B
TYR
54
A
LEU
417
B
LEU
71
A
THR
420
B
THR
74
A
HIS
430
B
HIS
84
A
ASP
433
B
ASP
87
A
ARG
438
B
ARG
92
BINDING SITE FOR RESIDUE GOL B 501
B
GOL
501
Software
5
BINDING SITE FOR RESIDUE GOL B 502
B
GOL
502
Software
4
BINDING SITE FOR RESIDUE GOL B 503
B
GOL
503
Software
3
BINDING SITE FOR RESIDUE GOL B 504
B
GOL
504
Software
1
BINDING SITE FOR RESIDUE GOL A 501
A
GOL
501
Software
4
B
ARG
366
A
ARG
20
5
1_555
B
SER
443
A
SER
97
5
1_555
B
ASN
444
A
ASN
98
5
1_555
B
GLN
445
A
GLN
99
5
1_555
B
GOL
502
D
GOL
5
1_555
B
TYR
400
A
TYR
54
4
1_555
B
PHE
441
A
PHE
95
4
1_555
B
VAL
442
A
VAL
96
4
1_555
B
GOL
501
C
GOL
4
1_555
B
GLY
384
A
GLY
38
3
1_555
B
GLU
404
A
GLU
58
3
1_555
B
GLU
471
A
GLU
125
3
1_555
B
LYS
480
A
LYS
134
1
1_555
A
ARG
366
B
ARG
20
4
1_555
A
SER
443
B
SER
97
4
1_555
A
ASN
444
B
ASN
98
4
1_555
A
HOH
627
I
HOH
4
1_555
19
P 21 21 21