0.024020 0.000000 0.000000 -0.000000 0.011620 0.000000 0.000000 -0.000000 0.015923 0.000000 0.000000 0.000000 Connelly, S. Wilson, I.A. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.000 90.000 90.000 41.632 86.059 62.802 C25 H24 F N O2 S 421.527 S-(4-fluorophenyl) 3-(dimethylamino)-5-[(E)-2-(4-hydroxy-3,5-dimethylphenyl)ethenyl]benzenecarbothioate non-polymer C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N C N 2 N O Y 3 N C Y 4 N C Y 5 N C Y 6 N C Y 7 N C Y 8 N C N 9 N N N 10 N C N 11 N C N 12 N C N 13 N C Y 14 N C Y 15 N C Y 16 N C Y 17 N C Y 18 N C Y 19 N C N 20 N C N 21 N C N 22 N O N 23 N S N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N H N 42 N H N 43 N H Y 44 N C Y 45 N C Y 46 N C Y 47 N C Y 48 N C Y 49 N C N 50 N F N 51 N H N 52 N H N 53 N H N 54 N H N 55 N N N 56 S C N 57 N C N 58 N O N 59 N C N 60 N O N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N N N 69 S C N 70 N C N 71 N O N 72 N C N 73 N C N 74 N C N 75 N N N 76 N C N 77 N N N 78 N N N 79 N O N 80 N H N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N H N 95 N N N 96 S C N 97 N C N 98 N O N 99 N C N 100 N C N 101 N O N 102 N N N 103 N O N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N N N 113 S C N 114 N C N 115 N O N 116 N C N 117 N C N 118 N O N 119 N O N 120 N O N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N H N 128 N N N 129 R C N 130 N C N 131 N O N 132 N C N 133 N S N 134 N O N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N N N 143 S C N 144 N C N 145 N O N 146 N C N 147 N C N 148 N C N 149 N O N 150 N O N 151 N O N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N H N 160 N H N 161 N N N 162 N C N 163 N C N 164 N O N 165 N O N 166 N H N 167 N H N 168 N H N 169 N H N 170 N H N 171 N N N 172 S C N 173 N C N 174 N O N 175 N C Y 176 N C Y 177 N N Y 178 N C Y 179 N C Y 180 N N N 181 N O N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N O N 193 N H N 194 N H N 195 N N N 196 S C N 197 N C N 198 N O N 199 S C N 200 N C N 201 N C N 202 N C N 203 N O N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N N N 218 S C N 219 N C N 220 N O N 221 N C N 222 N C N 223 N C N 224 N C N 225 N O N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N H N 237 N H N 238 N H N 239 N N N 240 S C N 241 N C N 242 N O N 243 N C N 244 N C N 245 N C N 246 N C N 247 N N N 248 N O N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N H N 260 N H N 261 N H N 262 N H N 263 N H N 264 N N N 265 S C N 266 N C N 267 N O N 268 N C N 269 N C N 270 N S N 271 N C N 272 N O N 273 N H N 274 N H N 275 N H N 276 N H N 277 N H N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N N N 285 S C N 286 N C N 287 N O N 288 N C Y 289 N C Y 290 N C Y 291 N C Y 292 N C Y 293 N C Y 294 N C N 295 N O N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N H N 306 N H N 307 N N N 308 S C N 309 N C N 310 N O N 311 N C N 312 N C N 313 N C N 314 N O N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N N N 325 S C N 326 N C N 327 N O N 328 N C N 329 N O N 330 N O N 331 N H N 332 N H N 333 N H N 334 N H N 335 N H N 336 N H N 337 N H N 338 N N N 339 S C N 340 N C N 341 N O N 342 R C N 343 N O N 344 N C N 345 N O N 346 N H N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 352 N H N 353 N H N 354 N H N 355 N N N 356 S C N 357 N C N 358 N O N 359 N C Y 360 N C Y 361 N C Y 362 N C Y 363 N N Y 364 N C Y 365 N C Y 366 N C Y 367 N C Y 368 N C N 369 N O N 370 N H N 371 N H N 372 N H N 373 N H N 374 N H N 375 N H N 376 N H N 377 N H N 378 N H N 379 N H N 380 N H N 381 N H N 382 N N N 383 S C N 384 N C N 385 N O N 386 N C Y 387 N C Y 388 N C Y 389 N C Y 390 N C Y 391 N C Y 392 N C N 393 N O N 394 N O N 395 N H N 396 N H N 397 N H N 398 N H N 399 N H N 400 N H N 401 N H N 402 N H N 403 N H N 404 N H N 405 N H N 406 N N N 407 S C N 408 N C N 409 N O N 410 N C N 411 N C N 412 N C N 413 N O N 414 N H N 415 N H N 416 N H N 417 N H N 418 N H N 419 N H N 420 N H N 421 N H N 422 N H N 423 N H N 424 N H N 1 N sing N 2 N sing Y 3 N doub Y 4 N sing N 5 N sing Y 6 N sing Y 7 N doub Y 8 N doub Y 9 N sing N 10 N sing N 11 E doub N 12 N sing Y 13 N doub Y 14 N sing Y 15 N sing Y 16 N doub N 17 N sing Y 18 N doub Y 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N doub N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N sing N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N sing Y 46 N sing Y 47 N doub Y 48 N sing Y 49 N doub Y 50 N sing Y 51 N doub N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N doub N 64 N sing N 65 N sing N 66 N sing N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N doub N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N doub N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N doub N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N doub N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N doub N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N doub N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N doub N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N doub N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N doub N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N doub N 173 N sing N 174 N sing N 175 N sing N 176 N sing Y 177 N sing Y 178 N doub Y 179 N doub N 180 N sing Y 181 N sing N 182 N sing Y 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N doub N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N doub N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N doub N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N doub N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N doub N 281 N sing N 282 N sing N 283 N sing N 284 N sing Y 285 N doub Y 286 N sing Y 287 N sing N 288 N sing Y 289 N doub N 290 N sing Y 291 N doub N 292 N sing Y 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N doub N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N doub N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N doub N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N doub N 350 N sing N 351 N sing N 352 N sing N 353 N sing Y 354 N doub Y 355 N sing Y 356 N sing N 357 N sing Y 358 N doub Y 359 N sing Y 360 N sing N 361 N sing Y 362 N sing Y 363 N doub N 364 N sing Y 365 N doub N 366 N sing Y 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N doub N 378 N sing N 379 N sing N 380 N sing N 381 N sing Y 382 N doub Y 383 N sing Y 384 N sing N 385 N sing Y 386 N doub N 387 N sing Y 388 N doub N 389 N sing Y 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N sing N 397 N sing N 398 N sing N 399 N sing N 400 N sing N 401 N doub N 402 N sing N 403 N sing N 404 N sing N 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N sing N 410 N sing N 411 N sing N 412 N sing US Biopolymers BIPMAA 0161 0006-3525 101 484 495 10.1002/bip.22407 24105107 Fluorogenic small molecules requiring reaction with a specific protein to create a fluorescent conjugate for biological imaging-what we know and what we need to learn. 2014 10.2210/pdb4l1s/pdb pdb_00004l1s 200.0 1 SINGLE CRYSTAL SI(111) BENT MONOCHROMATOR (HORIZONTAL FOCUSING) PIXEL 2012-08-02 PSI PILATUS 6M ASYMMETRIC CUT 4.965 DEGS SIDE SCATTERING BENT CUBE-ROOT I -BEAM SINGLE CRYSTAL SINGLE WAVELENGTH M x-ray 1 0.9797 1.0 BL12-2 SSRL 0.9797 SYNCHROTRON SSRL BEAMLINE BL12-2 13777.360 Transthyretin 2 man polymer 421.527 S-(4-fluorophenyl) 3-(dimethylamino)-5-[(E)-2-(4-hydroxy-3,5-dimethylphenyl)ethenyl]benzenecarbothioate 2 syn non-polymer 18.015 water 138 nat water ATTR, Prealbumin, TBPA no no GPTGTGESKCPLMVKVLDAVRGSPAINVAVHVFRKAADDTWEPFASGKTSESGELHGLTTEEEFVEGIYKVEIDTKSYWK ALGISPFHEHAEVVFTANDSGPRRYTIAALLSPYSYSTTAVVTNPKE GPTGTGESKCPLMVKVLDAVRGSPAINVAVHVFRKAADDTWEPFASGKTSESGELHGLTTEEEFVEGIYKVEIDTKSYWK ALGISPFHEHAEVVFTANDSGPRRYTIAALLSPYSYSTTAVVTNPKE A,B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human sample TTR, PALB 9606 Homo sapiens 562 Escherichia coli Epicurian Gold Plasmid pmmHA 1 2.04 39.75 VAPOR DIFFUSION, SITTING DROP 5.5 The wt-TTR was concentrated to 4 mg/ml in 10 mM NaPi, 100 mM KCl, at pH 7.6 and co-crystallized at room temperature with inhibitors using the vapor-diffusion sitting drop method, crystals were grown from 1.395 M sodium citrate, 3.5% v/v glycerol at ph 5.5. The crystals were frozen using a cryo-protectant solution of 1.395 m sodium citrate, ph 5.5, containing 10% v/v glycerol, vapor diffusion, sitting drop, temperature 298.0, VAPOR DIFFUSION, SITTING DROP 298 chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model pdbx_struct_special_symmetry pdbx_unobs_or_zero_occ_atoms struct_conn struct_site repository Initial release Database references Database references Advisory Data collection Database references Derived calculations Refinement description 1 0 2013-10-02 1 1 2014-02-05 1 2 2014-08-20 1 3 2023-09-20 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_conn.pdbx_leaving_atom_flag _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id Kinetic Stabilization of transthyretin through covalent modification of K15 by 3-(5-(3,5-dichlorophenyl)-1,3,4-oxadiazol-2-yl)-benzenesulfonamide RCSB Y RCSB 2013-06-03 REL REL 1W4 S-(4-fluorophenyl) 3-(dimethylamino)-5-[(E)-2-(4-hydroxy-3,5-dimethylphenyl)ethenyl]benzenecarbothioate HOH water UPON INCUBATION OF 1W4 WITH THE PROTEIN TRANSTHYRETIN THE MOLECULE CHEMOSELECTIVELY REACTS WITH K15 TO FORM A FLUORESCENT CONJUGATE (E)-3-(DIMETHYLAMINO)-5-(4-HYDROXY-3,5-DIMETHYLSTYRYL)BENZAMIDE 2FBR PDB experimental model 1W4 15 2 1W4 1W4 201 A 1W4 15 2 1W4 1W4 201 B HOH 2 3 HOH HOH 301 A HOH 5 3 HOH HOH 302 A HOH 8 3 HOH HOH 303 A HOH 10 3 HOH HOH 304 A HOH 11 3 HOH HOH 305 A HOH 12 3 HOH HOH 306 A HOH 17 3 HOH HOH 307 A HOH 19 3 HOH HOH 308 A HOH 21 3 HOH HOH 309 A HOH 27 3 HOH HOH 310 A HOH 28 3 HOH HOH 311 A HOH 29 3 HOH HOH 312 A HOH 30 3 HOH HOH 313 A HOH 31 3 HOH HOH 314 A HOH 32 3 HOH HOH 315 A HOH 33 3 HOH HOH 316 A HOH 35 3 HOH HOH 317 A HOH 36 3 HOH HOH 318 A HOH 39 3 HOH HOH 319 A HOH 41 3 HOH HOH 320 A HOH 42 3 HOH HOH 321 A HOH 44 3 HOH HOH 322 A HOH 49 3 HOH HOH 323 A HOH 57 3 HOH HOH 324 A HOH 59 3 HOH HOH 325 A HOH 61 3 HOH HOH 326 A HOH 64 3 HOH HOH 327 A HOH 65 3 HOH HOH 328 A HOH 68 3 HOH HOH 329 A HOH 71 3 HOH HOH 330 A HOH 72 3 HOH HOH 331 A HOH 73 3 HOH HOH 332 A HOH 76 3 HOH HOH 333 A HOH 81 3 HOH HOH 334 A HOH 84 3 HOH HOH 335 A HOH 85 3 HOH HOH 336 A HOH 86 3 HOH HOH 337 A HOH 87 3 HOH HOH 338 A HOH 88 3 HOH HOH 339 A HOH 90 3 HOH HOH 340 A HOH 94 3 HOH HOH 341 A HOH 95 3 HOH HOH 342 A HOH 97 3 HOH HOH 343 A HOH 98 3 HOH HOH 344 A HOH 101 3 HOH HOH 345 A HOH 102 3 HOH HOH 346 A HOH 106 3 HOH HOH 347 A HOH 109 3 HOH HOH 348 A HOH 110 3 HOH HOH 349 A HOH 114 3 HOH HOH 350 A HOH 116 3 HOH HOH 351 A HOH 121 3 HOH HOH 352 A HOH 123 3 HOH HOH 353 A HOH 129 3 HOH HOH 354 A HOH 131 3 HOH HOH 355 A HOH 136 3 HOH HOH 356 A HOH 143 3 HOH HOH 357 A HOH 148 3 HOH HOH 358 A HOH 149 3 HOH HOH 359 A HOH 150 3 HOH HOH 360 A HOH 151 3 HOH HOH 361 A HOH 152 3 HOH HOH 362 A HOH 160 3 HOH HOH 363 A HOH 172 3 HOH HOH 364 A HOH 184 3 HOH HOH 365 A HOH 198 3 HOH HOH 366 A HOH 199 3 HOH HOH 367 A HOH 202 3 HOH HOH 368 A HOH 203 3 HOH HOH 369 A HOH 215 3 HOH HOH 370 A HOH 217 3 HOH HOH 371 A HOH 243 3 HOH HOH 372 A HOH 246 3 HOH HOH 373 A HOH 248 3 HOH HOH 374 A HOH 257 3 HOH HOH 375 A HOH 1 3 HOH HOH 301 B HOH 3 3 HOH HOH 302 B HOH 4 3 HOH HOH 303 B HOH 6 3 HOH HOH 304 B HOH 7 3 HOH HOH 305 B HOH 9 3 HOH HOH 306 B HOH 13 3 HOH HOH 307 B HOH 16 3 HOH HOH 308 B HOH 18 3 HOH HOH 309 B HOH 24 3 HOH HOH 310 B HOH 25 3 HOH HOH 311 B HOH 26 3 HOH HOH 312 B HOH 34 3 HOH HOH 313 B HOH 37 3 HOH HOH 314 B HOH 38 3 HOH HOH 315 B HOH 45 3 HOH HOH 316 B HOH 48 3 HOH HOH 317 B HOH 50 3 HOH HOH 318 B HOH 51 3 HOH HOH 319 B HOH 52 3 HOH HOH 320 B HOH 53 3 HOH HOH 321 B HOH 54 3 HOH HOH 322 B HOH 55 3 HOH HOH 323 B HOH 56 3 HOH HOH 324 B HOH 58 3 HOH HOH 325 B HOH 60 3 HOH HOH 326 B HOH 69 3 HOH HOH 327 B HOH 70 3 HOH HOH 328 B HOH 74 3 HOH HOH 329 B HOH 78 3 HOH HOH 330 B HOH 83 3 HOH HOH 331 B HOH 89 3 HOH HOH 332 B HOH 92 3 HOH HOH 333 B HOH 96 3 HOH HOH 334 B HOH 100 3 HOH HOH 335 B HOH 103 3 HOH HOH 336 B HOH 105 3 HOH HOH 337 B HOH 108 3 HOH HOH 338 B HOH 113 3 HOH HOH 339 B HOH 118 3 HOH HOH 340 B HOH 125 3 HOH HOH 341 B HOH 128 3 HOH HOH 342 B HOH 132 3 HOH HOH 343 B HOH 133 3 HOH HOH 344 B HOH 144 3 HOH HOH 345 B HOH 145 3 HOH HOH 346 B HOH 146 3 HOH HOH 347 B HOH 156 3 HOH HOH 348 B HOH 158 3 HOH HOH 349 B HOH 167 3 HOH HOH 350 B HOH 170 3 HOH HOH 351 B HOH 182 3 HOH HOH 352 B HOH 188 3 HOH HOH 353 B HOH 189 3 HOH HOH 354 B HOH 197 3 HOH HOH 355 B HOH 214 3 HOH HOH 356 B HOH 225 3 HOH HOH 357 B HOH 230 3 HOH HOH 358 B HOH 232 3 HOH HOH 359 B HOH 249 3 HOH HOH 360 B HOH 253 3 HOH HOH 361 B HOH 256 3 HOH HOH 362 B HOH 258 3 HOH HOH 363 B n 1 1 A n 2 2 A n 3 3 A n 4 4 A n 5 5 A n 6 6 A n 7 7 A n 8 8 A n 9 9 A CYS 10 n 10 CYS 10 A PRO 11 n 11 PRO 11 A LEU 12 n 12 LEU 12 A MET 13 n 13 MET 13 A VAL 14 n 14 VAL 14 A LYS 15 n 15 LYS 15 A VAL 16 n 16 VAL 16 A LEU 17 n 17 LEU 17 A ASP 18 n 18 ASP 18 A ALA 19 n 19 ALA 19 A VAL 20 n 20 VAL 20 A ARG 21 n 21 ARG 21 A GLY 22 n 22 GLY 22 A SER 23 n 23 SER 23 A PRO 24 n 24 PRO 24 A ALA 25 n 25 ALA 25 A ILE 26 n 26 ILE 26 A ASN 27 n 27 ASN 27 A VAL 28 n 28 VAL 28 A ALA 29 n 29 ALA 29 A VAL 30 n 30 VAL 30 A HIS 31 n 31 HIS 31 A VAL 32 n 32 VAL 32 A PHE 33 n 33 PHE 33 A ARG 34 n 34 ARG 34 A LYS 35 n 35 LYS 35 A ALA 36 n 36 ALA 36 A ALA 37 n 37 ALA 37 A ASP 38 n 38 ASP 38 A ASP 39 n 39 ASP 39 A THR 40 n 40 THR 40 A TRP 41 n 41 TRP 41 A GLU 42 n 42 GLU 42 A PRO 43 n 43 PRO 43 A PHE 44 n 44 PHE 44 A ALA 45 n 45 ALA 45 A SER 46 n 46 SER 46 A GLY 47 n 47 GLY 47 A LYS 48 n 48 LYS 48 A THR 49 n 49 THR 49 A SER 50 n 50 SER 50 A GLU 51 n 51 GLU 51 A SER 52 n 52 SER 52 A GLY 53 n 53 GLY 53 A GLU 54 n 54 GLU 54 A LEU 55 n 55 LEU 55 A HIS 56 n 56 HIS 56 A GLY 57 n 57 GLY 57 A LEU 58 n 58 LEU 58 A THR 59 n 59 THR 59 A THR 60 n 60 THR 60 A GLU 61 n 61 GLU 61 A GLU 62 n 62 GLU 62 A GLU 63 n 63 GLU 63 A PHE 64 n 64 PHE 64 A VAL 65 n 65 VAL 65 A GLU 66 n 66 GLU 66 A GLY 67 n 67 GLY 67 A ILE 68 n 68 ILE 68 A TYR 69 n 69 TYR 69 A LYS 70 n 70 LYS 70 A VAL 71 n 71 VAL 71 A GLU 72 n 72 GLU 72 A ILE 73 n 73 ILE 73 A ASP 74 n 74 ASP 74 A THR 75 n 75 THR 75 A LYS 76 n 76 LYS 76 A SER 77 n 77 SER 77 A TYR 78 n 78 TYR 78 A TRP 79 n 79 TRP 79 A LYS 80 n 80 LYS 80 A ALA 81 n 81 ALA 81 A LEU 82 n 82 LEU 82 A GLY 83 n 83 GLY 83 A ILE 84 n 84 ILE 84 A SER 85 n 85 SER 85 A PRO 86 n 86 PRO 86 A PHE 87 n 87 PHE 87 A HIS 88 n 88 HIS 88 A GLU 89 n 89 GLU 89 A HIS 90 n 90 HIS 90 A ALA 91 n 91 ALA 91 A GLU 92 n 92 GLU 92 A VAL 93 n 93 VAL 93 A VAL 94 n 94 VAL 94 A PHE 95 n 95 PHE 95 A THR 96 n 96 THR 96 A ALA 97 n 97 ALA 97 A ASN 98 n 98 ASN 98 A ASP 99 n 99 ASP 99 A SER 100 n 100 SER 100 A GLY 101 n 101 GLY 101 A PRO 102 n 102 PRO 102 A ARG 103 n 103 ARG 103 A ARG 104 n 104 ARG 104 A TYR 105 n 105 TYR 105 A THR 106 n 106 THR 106 A ILE 107 n 107 ILE 107 A ALA 108 n 108 ALA 108 A ALA 109 n 109 ALA 109 A LEU 110 n 110 LEU 110 A LEU 111 n 111 LEU 111 A SER 112 n 112 SER 112 A PRO 113 n 113 PRO 113 A TYR 114 n 114 TYR 114 A SER 115 n 115 SER 115 A TYR 116 n 116 TYR 116 A SER 117 n 117 SER 117 A THR 118 n 118 THR 118 A THR 119 n 119 THR 119 A ALA 120 n 120 ALA 120 A VAL 121 n 121 VAL 121 A VAL 122 n 122 VAL 122 A THR 123 n 123 THR 123 A ASN 124 n 124 ASN 124 A PRO 125 n 125 PRO 125 A n 126 126 A n 127 127 A n 1 1 B n 2 2 B n 3 3 B n 4 4 B n 5 5 B n 6 6 B n 7 7 B n 8 8 B n 9 9 B CYS 10 n 10 CYS 10 B PRO 11 n 11 PRO 11 B LEU 12 n 12 LEU 12 B MET 13 n 13 MET 13 B VAL 14 n 14 VAL 14 B LYS 15 n 15 LYS 15 B VAL 16 n 16 VAL 16 B LEU 17 n 17 LEU 17 B ASP 18 n 18 ASP 18 B ALA 19 n 19 ALA 19 B VAL 20 n 20 VAL 20 B ARG 21 n 21 ARG 21 B GLY 22 n 22 GLY 22 B SER 23 n 23 SER 23 B PRO 24 n 24 PRO 24 B ALA 25 n 25 ALA 25 B ILE 26 n 26 ILE 26 B ASN 27 n 27 ASN 27 B VAL 28 n 28 VAL 28 B ALA 29 n 29 ALA 29 B VAL 30 n 30 VAL 30 B HIS 31 n 31 HIS 31 B VAL 32 n 32 VAL 32 B PHE 33 n 33 PHE 33 B ARG 34 n 34 ARG 34 B LYS 35 n 35 LYS 35 B ALA 36 n 36 ALA 36 B ALA 37 n 37 ALA 37 B ASP 38 n 38 ASP 38 B ASP 39 n 39 ASP 39 B THR 40 n 40 THR 40 B TRP 41 n 41 TRP 41 B GLU 42 n 42 GLU 42 B PRO 43 n 43 PRO 43 B PHE 44 n 44 PHE 44 B ALA 45 n 45 ALA 45 B SER 46 n 46 SER 46 B GLY 47 n 47 GLY 47 B LYS 48 n 48 LYS 48 B THR 49 n 49 THR 49 B SER 50 n 50 SER 50 B GLU 51 n 51 GLU 51 B SER 52 n 52 SER 52 B GLY 53 n 53 GLY 53 B GLU 54 n 54 GLU 54 B LEU 55 n 55 LEU 55 B HIS 56 n 56 HIS 56 B GLY 57 n 57 GLY 57 B LEU 58 n 58 LEU 58 B THR 59 n 59 THR 59 B THR 60 n 60 THR 60 B GLU 61 n 61 GLU 61 B GLU 62 n 62 GLU 62 B GLU 63 n 63 GLU 63 B PHE 64 n 64 PHE 64 B VAL 65 n 65 VAL 65 B GLU 66 n 66 GLU 66 B GLY 67 n 67 GLY 67 B ILE 68 n 68 ILE 68 B TYR 69 n 69 TYR 69 B LYS 70 n 70 LYS 70 B VAL 71 n 71 VAL 71 B GLU 72 n 72 GLU 72 B ILE 73 n 73 ILE 73 B ASP 74 n 74 ASP 74 B THR 75 n 75 THR 75 B LYS 76 n 76 LYS 76 B SER 77 n 77 SER 77 B TYR 78 n 78 TYR 78 B TRP 79 n 79 TRP 79 B LYS 80 n 80 LYS 80 B ALA 81 n 81 ALA 81 B LEU 82 n 82 LEU 82 B GLY 83 n 83 GLY 83 B ILE 84 n 84 ILE 84 B SER 85 n 85 SER 85 B PRO 86 n 86 PRO 86 B PHE 87 n 87 PHE 87 B HIS 88 n 88 HIS 88 B GLU 89 n 89 GLU 89 B HIS 90 n 90 HIS 90 B ALA 91 n 91 ALA 91 B GLU 92 n 92 GLU 92 B VAL 93 n 93 VAL 93 B VAL 94 n 94 VAL 94 B PHE 95 n 95 PHE 95 B THR 96 n 96 THR 96 B ALA 97 n 97 ALA 97 B ASN 98 n 98 ASN 98 B ASP 99 n 99 ASP 99 B SER 100 n 100 SER 100 B GLY 101 n 101 GLY 101 B PRO 102 n 102 PRO 102 B ARG 103 n 103 ARG 103 B ARG 104 n 104 ARG 104 B TYR 105 n 105 TYR 105 B THR 106 n 106 THR 106 B ILE 107 n 107 ILE 107 B ALA 108 n 108 ALA 108 B ALA 109 n 109 ALA 109 B LEU 110 n 110 LEU 110 B LEU 111 n 111 LEU 111 B SER 112 n 112 SER 112 B PRO 113 n 113 PRO 113 B TYR 114 n 114 TYR 114 B SER 115 n 115 SER 115 B TYR 116 n 116 TYR 116 B SER 117 n 117 SER 117 B THR 118 n 118 THR 118 B THR 119 n 119 THR 119 B ALA 120 n 120 ALA 120 B VAL 121 n 121 VAL 121 B VAL 122 n 122 VAL 122 B THR 123 n 123 THR 123 B ASN 124 n 124 ASN 124 B n 125 125 B n 126 126 B n 127 127 B author_defined_assembly 4 tetrameric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 2_555 -x,-y,z crystal symmetry operation 0.0000000000 0.0000000000 0.0000000000 A O SER 23 A O SER 23 A N ASP 18 A N ASP 18 A N LEU 17 A N LEU 17 A O LEU 111 A O LEU 111 A N LEU 110 A N LEU 110 A O SER 117 A O SER 117 A N THR 118 A N THR 118 B O TYR 116 B O TYR 116 B O THR 123 B O THR 123 B N ARG 104 B N ARG 104 B O LEU 111 B O LEU 111 B N LEU 17 B N LEU 17 B N ASP 18 B N ASP 18 B O SER 23 B O SER 23 A O LEU 55 A O LEU 55 A N VAL 14 A N VAL 14 A N LEU 17 A N LEU 17 A O LEU 111 A O LEU 111 A N LEU 110 A N LEU 110 A O SER 117 A O SER 117 A N THR 118 A N THR 118 B O TYR 116 B O TYR 116 B O THR 123 B O THR 123 B N ARG 104 B N ARG 104 B O LEU 111 B O LEU 111 B N LEU 17 B N LEU 17 B N VAL 14 B N VAL 14 B O LEU 55 B O LEU 55 A O ALA 45 A O ALA 45 A N VAL 32 A N VAL 32 A N HIS 31 A N HIS 31 A O GLU 72 A O GLU 72 A N TYR 69 A N TYR 69 A O PHE 95 A O PHE 95 A N GLU 89 A N GLU 89 B O VAL 94 B O VAL 94 B O ALA 91 B O ALA 91 B N ILE 73 B N ILE 73 B O GLU 72 B O GLU 72 B N HIS 31 B N HIS 31 B N VAL 32 B N VAL 32 B O ALA 45 B O ALA 45 1 A 1W4 201 C 1W4 1 A 1W4 201 C 1W4 1 B 1W4 201 D 1W4 1 B 1W4 201 D 1W4 1 B 1W4 201 D 1W4 1 B HOH 354 F HOH 1 A GLY 1 A GLY 1 1 Y 1 A PRO 2 A PRO 2 1 Y 1 A THR 3 A THR 3 1 Y 1 A GLY 4 A GLY 4 1 Y 1 A THR 5 A THR 5 1 Y 1 A GLY 6 A GLY 6 1 Y 1 A GLU 7 A GLU 7 1 Y 1 A SER 8 A SER 8 1 Y 1 A LYS 9 A LYS 9 1 Y 1 A LYS 126 A LYS 126 1 Y 1 A GLU 127 A GLU 127 1 Y 1 B GLY 1 B GLY 1 1 Y 1 B PRO 2 B PRO 2 1 Y 1 B THR 3 B THR 3 1 Y 1 B GLY 4 B GLY 4 1 Y 1 B THR 5 B THR 5 1 Y 1 B GLY 6 B GLY 6 1 Y 1 B GLU 7 B GLU 7 1 Y 1 B SER 8 B SER 8 1 Y 1 B LYS 9 B LYS 9 1 Y 1 B PRO 125 B PRO 125 1 Y 1 B LYS 126 B LYS 126 1 Y 1 B GLU 127 B GLU 127 1 Y 1 B B OH O TYR HOH 116 363 2.08 1 A B OH O TYR HOH 116 363 2.09 1 A LYS 15 10.88 A 1 A LYS 15 10.69 B 1 B B PRO ARG 102 103 -145.89 1 5.45 0.90 118.30 123.75 A A A CB CG OD1 ASP ASP ASP 74 74 74 A A A N 1 B B OE1 NH2 GLU ARG 42 103 2.06 B 1_555 4_544 1 B A O O LYS HOH 80 326 2.12 1_555 1_655 1 A HIS 90 -170.55 149.49 97.860 24.9124 5.200 0.5100 -0.0000 -0.0000 -0.4000 -0.0000 -0.1100 0.9710 0.9670 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : REFINED INDIVIDUALLY 0.1852 0.1602 0.1615 1.5000 37.48 1796 36009 5.0000 97.9500 0.1991 0.1657 1.000 0.120 0.8823 0.0910 0.0705 RANDOM 1 THROUGHOUT 0.000 MOLECULAR REPLACEMENT 0.0910 0.0710 0.8000 0.8000 1.2000 2FBR MAXIMUM LIKELIHOOD MASK 1.5000 37.48 138 1967 44 0 1785 0.014 0.019 2032 0.001 0.020 1887 1.592 1.982 2808 3.600 3.000 4390 6.215 5.000 276 30.794 24.023 87 15.944 15.000 315 19.742 15.000 10 0.103 0.200 311 0.048 0.021 2333 0.096 0.020 461 2.963 1.918 973 2.905 1.915 972 3.607 2.885 1226 17.386 3.000 3919 29.216 5.000 44 12.428 5.000 3938 0.2800 0.2200 1.5410 129 2310 2439 20 91.3100 12.6 1.50 37.48 4L1S 36103 0.059 1 18.6 6.1 98.5 1.50 1.58 5.9 5007 0.537 1 5.9 95.7 refinement Garib N. Murshudov garib@ysbl.york.ac.uk Fortran_77 http://www.ccp4.ac.uk/dist/html/refmac5.html REFMAC program data extraction PDB deposit@deposit.rcsb.org April 22, 2011 C++ http://sw-tools.pdb.org/apps/PDB_EXTRACT/ PDB_EXTRACT package 3.11 data collection Blu-Ice data reduction XDS data scaling XDS phasing PHASER Covalent modification of transthyretin K15 by yielding the fluorescent conjugate (E)-3-(dimethylamino)-5-(4-hydroxy-3,5-dimethylstyryl)benzamide 1 N N 1 N N 2 N N 2 N N 3 N N 3 N N A ASP 74 A ASP 74 HELX_P A GLY 83 A GLY 83 1 1 10 B ASP 74 B ASP 74 HELX_P B LEU 82 B LEU 82 1 2 9 covale 1.330 one B B A LYS 15 A NZ LYS 15 1_555 A 1W4 201 C C1 1W4 1_555 covale 1.330 one B B B LYS 15 B NZ LYS 15 1_555 B 1W4 201 D C1 1W4 1_555 TRANSPORT PROTEIN Hormone transport protein, Thyroxine, retinol, TRANSPORT PROTEIN TTHY_HUMAN UNP 1 21 P02766 GPTGTGESKCPLMVKVLDAVRGSPAINVAVHVFRKAADDTWEPFASGKTSESGELHGLTTEEEFVEGIYKVEIDTKSYWK ALGISPFHEHAEVVFTANDSGPRRYTIAALLSPYSYSTTAVVTNPKE 21 147 4L1S 1 127 P02766 A 1 1 127 21 147 4L1S 1 127 P02766 B 1 1 127 8 8 8 anti-parallel parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A SER 23 A SER 23 A PRO 24 A PRO 24 A LEU 12 A LEU 12 A ASP 18 A ASP 18 A ARG 104 A ARG 104 A SER 112 A SER 112 A SER 115 A SER 115 A THR 123 A THR 123 B SER 115 B SER 115 B THR 123 B THR 123 B ARG 104 B ARG 104 B SER 112 B SER 112 B LEU 12 B LEU 12 B ASP 18 B ASP 18 B SER 23 B SER 23 B PRO 24 B PRO 24 A GLU 54 A GLU 54 A LEU 55 A LEU 55 A LEU 12 A LEU 12 A ASP 18 A ASP 18 A ARG 104 A ARG 104 A SER 112 A SER 112 A SER 115 A SER 115 A THR 123 A THR 123 B SER 115 B SER 115 B THR 123 B THR 123 B ARG 104 B ARG 104 B SER 112 B SER 112 B LEU 12 B LEU 12 B ASP 18 B ASP 18 B GLU 54 B GLU 54 B LEU 55 B LEU 55 A TRP 41 A TRP 41 A LYS 48 A LYS 48 A ALA 29 A ALA 29 A LYS 35 A LYS 35 A GLY 67 A GLY 67 A ILE 73 A ILE 73 A HIS 88 A HIS 88 A ALA 97 A ALA 97 B HIS 88 B HIS 88 B ALA 97 B ALA 97 B GLY 67 B GLY 67 B ILE 73 B ILE 73 B ALA 29 B ALA 29 B LYS 35 B LYS 35 B TRP 41 B TRP 41 B LYS 48 B LYS 48 BINDING SITE FOR RESIDUE 1W4 A 201 A 1W4 201 Software 8 BINDING SITE FOR RESIDUE 1W4 B 201 B 1W4 201 Software 8 A MET 13 A MET 13 8 2_555 A LYS 15 A LYS 15 8 2_555 A LYS 15 A LYS 15 8 1_555 A LEU 110 A LEU 110 8 1_555 A LEU 110 A LEU 110 8 2_555 A SER 117 A SER 117 8 2_555 A SER 117 A SER 117 8 1_555 A THR 118 A THR 118 8 2_555 B LYS 15 B LYS 15 8 1_555 B LYS 15 B LYS 15 8 2_555 B LEU 17 B LEU 17 8 2_555 B LEU 17 B LEU 17 8 1_555 B LEU 110 B LEU 110 8 2_555 B SER 117 B SER 117 8 2_555 B SER 117 B SER 117 8 1_555 B THR 118 B THR 118 8 2_555 18 P 21 21 2