0.014408 0.000000 0.000000 -0.000000 0.014408 0.000000 0.000000 -0.000000 0.006975 0.000000 0.000000 0.000000 Wang, J. Zhong, C. Ding, J. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.000 90.000 90.000 69.408 69.408 143.378 C19 H21 F3 N6 390.405 2-{[4-(5-ethylpyrimidin-4-yl)piperazin-1-yl]methyl}-5-(trifluoromethyl)-1H-benzimidazole non-polymer C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking Zn 2 65.409 ZINC ION non-polymer Y 1 N C Y 2 N C Y 3 N C Y 4 N N Y 5 N N N 6 N F N 7 N C N 8 N F N 9 N F Y 10 N C Y 11 N C Y 12 N C Y 13 N C Y 14 N C Y 15 N C Y 16 N N Y 17 N N Y 18 N C N 19 N C N 20 N N N 21 N C N 22 N C N 23 N C N 24 N C N 25 N N N 26 N C N 27 N C Y 28 N C N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N H N 42 N H N 43 N H N 44 N H N 45 N H N 46 N H N 47 N H N 48 N H N 49 N H N 50 N N N 51 S C N 52 N C N 53 N O N 54 N C N 55 N O N 56 N H N 57 N H N 58 N H N 59 N H N 60 N H N 61 N H N 62 N H N 63 N N N 64 S C N 65 N C N 66 N O N 67 N C N 68 N C N 69 N C N 70 N N N 71 N C N 72 N N N 73 N N N 74 N O N 75 N H N 76 N H N 77 N H N 78 N H N 79 N H N 80 N H N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N H N 90 N N N 91 S C N 92 N C N 93 N O N 94 N C N 95 N C N 96 N O N 97 N N N 98 N O N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N N N 108 S C N 109 N C N 110 N O N 111 N C N 112 N C N 113 N O N 114 N O N 115 N O N 116 N H N 117 N H N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N N N 124 R C N 125 N C N 126 N O N 127 N C N 128 N S N 129 N O N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C N 142 N C N 143 N C N 144 N O N 145 N N N 146 N O N 147 N H N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N N N 158 S C N 159 N C N 160 N O N 161 N C N 162 N C N 163 N C N 164 N O N 165 N O N 166 N O N 167 N H N 168 N H N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N N N 177 N C N 178 N C N 179 N O N 180 N O N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N N N 187 S C N 188 N C N 189 N O N 190 N C Y 191 N C Y 192 N N Y 193 N C Y 194 N C Y 195 N N N 196 N O N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N O N 208 N H N 209 N H N 210 N N N 211 S C N 212 N C N 213 N O N 214 S C N 215 N C N 216 N C N 217 N C N 218 N O N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N N N 233 S C N 234 N C N 235 N O N 236 N C N 237 N C N 238 N C N 239 N C N 240 N O N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N N N 255 S C N 256 N C N 257 N O N 258 N C N 259 N C N 260 N C N 261 N C N 262 N N N 263 N O N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 N H N 275 N H N 276 N H N 277 N H N 278 N H N 279 N N N 280 S C N 281 N C N 282 N O N 283 N C N 284 N C N 285 N S N 286 N C N 287 N O N 288 N H N 289 N H N 290 N H N 291 N H N 292 N H N 293 N H N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N N N 300 S C N 301 N C N 302 N O N 303 N C Y 304 N C Y 305 N C Y 306 N C Y 307 N C Y 308 N C Y 309 N C N 310 N O N 311 N H N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N N N 323 S C N 324 N C N 325 N O N 326 N C N 327 N C N 328 N C N 329 N O N 330 N H N 331 N H N 332 N H N 333 N H N 334 N H N 335 N H N 336 N H N 337 N H N 338 N H N 339 N N N 340 S C N 341 N C N 342 N O N 343 N C N 344 N O N 345 N O N 346 N H N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 352 N H N 353 N N N 354 S C N 355 N C N 356 N O N 357 R C N 358 N O N 359 N C N 360 N O N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N N N 371 S C N 372 N C N 373 N O N 374 N C Y 375 N C Y 376 N C Y 377 N C Y 378 N N Y 379 N C Y 380 N C Y 381 N C Y 382 N C Y 383 N C N 384 N O N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 392 N H N 393 N H N 394 N H N 395 N H N 396 N H N 397 N N N 398 S C N 399 N C N 400 N O N 401 N C Y 402 N C Y 403 N C Y 404 N C Y 405 N C Y 406 N C Y 407 N C N 408 N O N 409 N O N 410 N H N 411 N H N 412 N H N 413 N H N 414 N H N 415 N H N 416 N H N 417 N H N 418 N H N 419 N H N 420 N H N 421 N N N 422 S C N 423 N C N 424 N O N 425 N C N 426 N C N 427 N C N 428 N O N 429 N H N 430 N H N 431 N H N 432 N H N 433 N H N 434 N H N 435 N H N 436 N H N 437 N H N 438 N H N 439 N H N 440 N ZN N 1 N sing N 2 N sing N 3 N sing N 4 N sing Y 5 N doub Y 6 N sing Y 7 N sing Y 8 N doub Y 9 N sing Y 10 N doub Y 11 N doub N 12 N sing N 13 N sing Y 14 N sing Y 15 N sing Y 16 N sing N 17 N sing N 18 N sing N 19 N sing Y 20 N doub Y 21 N sing N 22 N sing N 23 N sing Y 24 N sing N 25 N sing N 26 N sing N 27 N sing Y 28 N doub Y 29 N doub N 30 N sing Y 31 N sing N 32 N sing N 33 N sing N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N doub N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N sing N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N doub N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N doub N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N doub N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N doub N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N doub N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N doub N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N doub N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N doub N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N doub N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N doub N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N doub N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N doub N 188 N sing N 189 N sing N 190 N sing N 191 N sing Y 192 N sing Y 193 N doub Y 194 N doub N 195 N sing Y 196 N sing N 197 N sing Y 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N doub N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N doub N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N doub N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N doub N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N doub N 296 N sing N 297 N sing N 298 N sing N 299 N sing Y 300 N doub Y 301 N sing Y 302 N sing N 303 N sing Y 304 N doub N 305 N sing Y 306 N doub N 307 N sing Y 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N doub N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N doub N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N doub N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N doub N 365 N sing N 366 N sing N 367 N sing N 368 N sing Y 369 N doub Y 370 N sing Y 371 N sing N 372 N sing Y 373 N doub Y 374 N sing Y 375 N sing N 376 N sing Y 377 N sing Y 378 N doub N 379 N sing Y 380 N doub N 381 N sing Y 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N doub N 393 N sing N 394 N sing N 395 N sing N 396 N sing Y 397 N doub Y 398 N sing Y 399 N sing N 400 N sing Y 401 N doub N 402 N sing Y 403 N doub N 404 N sing Y 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N sing N 410 N sing N 411 N sing N 412 N sing N 413 N sing N 414 N sing N 415 N sing N 416 N doub N 417 N sing N 418 N sing N 419 N sing N 420 N sing N 421 N sing N 422 N sing N 423 N sing N 424 N sing N 425 N sing N 426 N sing N 427 N sing UK Biochem.J. BIJOAK 0043 0264-6021 454 39 47 10.1042/BJ20121863 23731517 Crystal structures of S6K1 provide insights into the regulation mechanism of S6K1 by the hydrophobic motif 2013 10.2210/pdb4l3l/pdb pdb_00004l3l 100 1 CCD 2012-05-20 CCD ADSC unsupported-q315 SINGLE WAVELENGTH M x-ray 1 1.2826 1.0 22.51 181839 0.121 1.82 2.100 50.000 20480 96.30 8.90 BL17U SSRF 1.2826 SYNCHROTRON SSRF BEAMLINE BL17U 34337.094 RPS6KB1 protein UNP residues 88-375 1 man polymer 390.405 2-{[4-(5-ethylpyrimidin-4-yl)piperazin-1-yl]methyl}-5-(trifluoromethyl)-1H-benzimidazole 1 syn non-polymer 65.409 ZINC ION 1 syn non-polymer 18.015 water 61 nat water Ribosomal protein S6 kinase beta-1, Ribosomal protein S6 kinase, 70kDa, polypeptide 1, isoform CRA_c no no GAMSETSVNRGPEKIRPECFELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEVK HPFIVDLIYAFQTGGKLYLILEYLSGGELFMQLEREGIFMEDTACFYLAEISMALGHLHQKGIIYRDLKPENIMLNHQGH VKLTDFGLCKESIHDGTVTHTFCGTIEYMAPEILMRSGHNRAVDWWSLGALMYDMLTGAPPFTGENRKKTIDKILKCKLN LPPYLTQEARDLLKKLLKRNAASRLGAGPGDAGEVQAHPFFRHINWEELLARKVEPPFKPLLQS GAMSETSVNRGPEKIRPECFELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEVK HPFIVDLIYAFQTGGKLYLILEYLSGGELFMQLEREGIFMEDTACFYLAEISMALGHLHQKGIIYRDLKPENIMLNHQGH VKLTDFGLCKESIHDGTVTHTFCGTIEYMAPEILMRSGHNRAVDWWSLGALMYDMLTGAPPFTGENRKKTIDKILKCKLN LPPYLTQEARDLLKKLLKRNAASRLGAGPGDAGEVQAHPFFRHINWEELLARKVEPPFKPLLQS A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human sample RPS6KB1, hCG_1815774 9606 Homo sapiens 7108 Spodoptera frugiperda Spodoptera frugiperda plasmid pFastBacHTB 1 2.61 52.88 0.452 VAPOR DIFFUSION, HANGING DROP 7.5 2.5M sodium formate, 0.1M HEPES, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 289K 289 software chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model pdbx_struct_conn_angle struct_conn struct_ref_seq_dif struct_site repository Initial release Database references Refinement description Data collection Database references Derived calculations Refinement description 1 0 2013-07-24 1 1 2013-09-04 1 2 2017-11-15 1 3 2023-11-08 _software.classification _software.contact_author _software.contact_author_email _software.date _software.language _software.location _software.name _software.type _software.version _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id RCSB Y PDBJ 2013-06-06 REL REL 0.080 2.330 84.50 7.30 0.096 2.800 84.90 7.30 0.108 2.515 96.90 8.40 0.113 1.993 99.10 9.10 0.134 1.814 99.80 9.30 0.166 1.700 100.00 9.40 0.200 1.607 100.00 9.40 0.256 1.489 100.00 9.40 0.326 1.336 100.00 9.40 0.430 1.143 100.00 9.40 5FI 2-{[4-(5-ethylpyrimidin-4-yl)piperazin-1-yl]methyl}-5-(trifluoromethyl)-1H-benzimidazole ZN ZINC ION HOH water 3A62 PDB experimental model DRG 1 2 5FI 5FI 401 A ZN 1 3 ZN ZN 402 A HOH 1 4 HOH HOH 501 A HOH 2 4 HOH HOH 502 A HOH 3 4 HOH HOH 503 A HOH 4 4 HOH HOH 504 A HOH 5 4 HOH HOH 505 A HOH 6 4 HOH HOH 506 A HOH 7 4 HOH HOH 507 A HOH 8 4 HOH HOH 508 A HOH 9 4 HOH HOH 509 A HOH 10 4 HOH HOH 510 A HOH 11 4 HOH HOH 511 A HOH 12 4 HOH HOH 512 A HOH 13 4 HOH HOH 513 A HOH 14 4 HOH HOH 514 A HOH 15 4 HOH HOH 515 A HOH 16 4 HOH HOH 516 A HOH 17 4 HOH HOH 517 A HOH 18 4 HOH HOH 518 A HOH 19 4 HOH HOH 519 A HOH 20 4 HOH HOH 520 A HOH 21 4 HOH HOH 521 A HOH 22 4 HOH HOH 522 A HOH 23 4 HOH HOH 523 A HOH 24 4 HOH HOH 524 A HOH 26 4 HOH HOH 525 A HOH 28 4 HOH HOH 526 A HOH 29 4 HOH HOH 527 A HOH 30 4 HOH HOH 528 A HOH 31 4 HOH HOH 529 A HOH 32 4 HOH HOH 530 A HOH 34 4 HOH HOH 531 A HOH 35 4 HOH HOH 532 A HOH 39 4 HOH HOH 533 A HOH 42 4 HOH HOH 534 A HOH 43 4 HOH HOH 535 A HOH 45 4 HOH HOH 536 A HOH 46 4 HOH HOH 537 A HOH 48 4 HOH HOH 538 A HOH 50 4 HOH HOH 539 A HOH 51 4 HOH HOH 540 A HOH 53 4 HOH HOH 541 A HOH 56 4 HOH HOH 542 A HOH 59 4 HOH HOH 543 A HOH 60 4 HOH HOH 544 A HOH 61 4 HOH HOH 545 A HOH 62 4 HOH HOH 546 A HOH 63 4 HOH HOH 547 A HOH 64 4 HOH HOH 548 A HOH 65 4 HOH HOH 549 A HOH 68 4 HOH HOH 550 A HOH 70 4 HOH HOH 551 A HOH 76 4 HOH HOH 552 A HOH 82 4 HOH HOH 553 A HOH 83 4 HOH HOH 554 A HOH 84 4 HOH HOH 555 A HOH 87 4 HOH HOH 556 A HOH 88 4 HOH HOH 557 A HOH 92 4 HOH HOH 558 A HOH 95 4 HOH HOH 559 A HOH 96 4 HOH HOH 560 A HOH 97 4 HOH HOH 561 A n 1 49 A n 2 50 A n 3 51 A n 4 52 A n 5 53 A n 6 54 A n 7 55 A n 8 56 A n 9 57 A n 10 58 A n 11 59 A n 12 60 A n 13 61 A LYS 62 n 14 LYS 62 A ILE 63 n 15 ILE 63 A ALA 64 n 16 ARG 64 A PRO 65 n 17 PRO 65 A GLU 66 n 18 GLU 66 A CYS 67 n 19 CYS 67 A PHE 68 n 20 PHE 68 A GLU 69 n 21 GLU 69 A LEU 70 n 22 LEU 70 A LEU 71 n 23 LEU 71 A ARG 72 n 24 ARG 72 A VAL 73 n 25 VAL 73 A LEU 74 n 26 LEU 74 A GLY 75 n 27 GLY 75 A LYS 76 n 28 LYS 76 A GLY 77 n 29 GLY 77 A GLY 78 n 30 GLY 78 A TYR 79 n 31 TYR 79 A GLY 80 n 32 GLY 80 A LYS 81 n 33 LYS 81 A VAL 82 n 34 VAL 82 A PHE 83 n 35 PHE 83 A GLN 84 n 36 GLN 84 A VAL 85 n 37 VAL 85 A ARG 86 n 38 ARG 86 A LYS 87 n 39 LYS 87 A VAL 88 n 40 VAL 88 A THR 89 n 41 THR 89 A GLY 90 n 42 GLY 90 A ALA 91 n 43 ALA 91 A ASN 92 n 44 ASN 92 A THR 93 n 45 THR 93 A GLY 94 n 46 GLY 94 A LYS 95 n 47 LYS 95 A ILE 96 n 48 ILE 96 A PHE 97 n 49 PHE 97 A ALA 98 n 50 ALA 98 A MET 99 n 51 MET 99 A LYS 100 n 52 LYS 100 A VAL 101 n 53 VAL 101 A LEU 102 n 54 LEU 102 A LYS 103 n 55 LYS 103 A LYS 104 n 56 LYS 104 A ALA 105 n 57 ALA 105 A MET 106 n 58 MET 106 A ILE 107 n 59 ILE 107 A VAL 108 n 60 VAL 108 A ARG 109 n 61 ARG 109 A ASN 110 n 62 ASN 110 A ALA 111 n 63 ALA 111 A LYS 112 n 64 LYS 112 A ASP 113 n 65 ASP 113 A THR 114 n 66 THR 114 A ALA 115 n 67 ALA 115 A HIS 116 n 68 HIS 116 A THR 117 n 69 THR 117 A LYS 118 n 70 LYS 118 A ALA 119 n 71 ALA 119 A GLU 120 n 72 GLU 120 A ARG 121 n 73 ARG 121 A ASN 122 n 74 ASN 122 A ILE 123 n 75 ILE 123 A LEU 124 n 76 LEU 124 A GLU 125 n 77 GLU 125 A GLU 126 n 78 GLU 126 A VAL 127 n 79 VAL 127 A LYS 128 n 80 LYS 128 A HIS 129 n 81 HIS 129 A PRO 130 n 82 PRO 130 A PHE 131 n 83 PHE 131 A ILE 132 n 84 ILE 132 A VAL 133 n 85 VAL 133 A ASP 134 n 86 ASP 134 A LEU 135 n 87 LEU 135 A ILE 136 n 88 ILE 136 A TYR 137 n 89 TYR 137 A ALA 138 n 90 ALA 138 A PHE 139 n 91 PHE 139 A GLN 140 n 92 GLN 140 A THR 141 n 93 THR 141 A GLY 142 n 94 GLY 142 A GLY 143 n 95 GLY 143 A LYS 144 n 96 LYS 144 A LEU 145 n 97 LEU 145 A TYR 146 n 98 TYR 146 A LEU 147 n 99 LEU 147 A ILE 148 n 100 ILE 148 A LEU 149 n 101 LEU 149 A GLU 150 n 102 GLU 150 A TYR 151 n 103 TYR 151 A LEU 152 n 104 LEU 152 A SER 153 n 105 SER 153 A GLY 154 n 106 GLY 154 A GLY 155 n 107 GLY 155 A GLU 156 n 108 GLU 156 A LEU 157 n 109 LEU 157 A PHE 158 n 110 PHE 158 A MET 159 n 111 MET 159 A GLN 160 n 112 GLN 160 A LEU 161 n 113 LEU 161 A GLU 162 n 114 GLU 162 A ARG 163 n 115 ARG 163 A GLU 164 n 116 GLU 164 A GLY 165 n 117 GLY 165 A ILE 166 n 118 ILE 166 A PHE 167 n 119 PHE 167 A MET 168 n 120 MET 168 A GLU 169 n 121 GLU 169 A ASP 170 n 122 ASP 170 A THR 171 n 123 THR 171 A ALA 172 n 124 ALA 172 A CYS 173 n 125 CYS 173 A PHE 174 n 126 PHE 174 A TYR 175 n 127 TYR 175 A LEU 176 n 128 LEU 176 A ALA 177 n 129 ALA 177 A GLU 178 n 130 GLU 178 A ILE 179 n 131 ILE 179 A SER 180 n 132 SER 180 A MET 181 n 133 MET 181 A ALA 182 n 134 ALA 182 A LEU 183 n 135 LEU 183 A GLY 184 n 136 GLY 184 A HIS 185 n 137 HIS 185 A LEU 186 n 138 LEU 186 A HIS 187 n 139 HIS 187 A GLN 188 n 140 GLN 188 A LYS 189 n 141 LYS 189 A GLY 190 n 142 GLY 190 A ILE 191 n 143 ILE 191 A ILE 192 n 144 ILE 192 A TYR 193 n 145 TYR 193 A ARG 194 n 146 ARG 194 A ASP 195 n 147 ASP 195 A LEU 196 n 148 LEU 196 A LYS 197 n 149 LYS 197 A PRO 198 n 150 PRO 198 A GLU 199 n 151 GLU 199 A ASN 200 n 152 ASN 200 A ILE 201 n 153 ILE 201 A MET 202 n 154 MET 202 A LEU 203 n 155 LEU 203 A ASN 204 n 156 ASN 204 A HIS 205 n 157 HIS 205 A GLN 206 n 158 GLN 206 A GLY 207 n 159 GLY 207 A HIS 208 n 160 HIS 208 A VAL 209 n 161 VAL 209 A LYS 210 n 162 LYS 210 A LEU 211 n 163 LEU 211 A THR 212 n 164 THR 212 A ASP 213 n 165 ASP 213 A PHE 214 n 166 PHE 214 A GLY 215 n 167 GLY 215 A LEU 216 n 168 LEU 216 A CYS 217 n 169 CYS 217 A LYS 218 n 170 LYS 218 A GLU 219 n 171 GLU 219 A SER 220 n 172 SER 220 A ILE 221 n 173 ILE 221 A HIS 222 n 174 HIS 222 A ASP 223 n 175 ASP 223 A GLY 224 n 176 GLY 224 A THR 225 n 177 THR 225 A VAL 226 n 178 VAL 226 A THR 227 n 179 THR 227 A HIS 228 n 180 HIS 228 A THR 229 n 181 THR 229 A PHE 230 n 182 PHE 230 A CYS 231 n 183 CYS 231 A GLY 232 n 184 GLY 232 A THR 233 n 185 THR 233 A ILE 234 n 186 ILE 234 A GLU 235 n 187 GLU 235 A TYR 236 n 188 TYR 236 A MET 237 n 189 MET 237 A ALA 238 n 190 ALA 238 A PRO 239 n 191 PRO 239 A GLU 240 n 192 GLU 240 A ILE 241 n 193 ILE 241 A LEU 242 n 194 LEU 242 A MET 243 n 195 MET 243 A ARG 244 n 196 ARG 244 A SER 245 n 197 SER 245 A GLY 246 n 198 GLY 246 A HIS 247 n 199 HIS 247 A ASN 248 n 200 ASN 248 A ARG 249 n 201 ARG 249 A ALA 250 n 202 ALA 250 A VAL 251 n 203 VAL 251 A ASP 252 n 204 ASP 252 A TRP 253 n 205 TRP 253 A TRP 254 n 206 TRP 254 A SER 255 n 207 SER 255 A LEU 256 n 208 LEU 256 A GLY 257 n 209 GLY 257 A ALA 258 n 210 ALA 258 A LEU 259 n 211 LEU 259 A MET 260 n 212 MET 260 A TYR 261 n 213 TYR 261 A ASP 262 n 214 ASP 262 A MET 263 n 215 MET 263 A LEU 264 n 216 LEU 264 A THR 265 n 217 THR 265 A GLY 266 n 218 GLY 266 A ALA 267 n 219 ALA 267 A PRO 268 n 220 PRO 268 A PRO 269 n 221 PRO 269 A PHE 270 n 222 PHE 270 A THR 271 n 223 THR 271 A GLY 272 n 224 GLY 272 A GLU 273 n 225 GLU 273 A ASN 274 n 226 ASN 274 A ARG 275 n 227 ARG 275 A LYS 276 n 228 LYS 276 A ALA 277 n 229 LYS 277 A THR 278 n 230 THR 278 A ILE 279 n 231 ILE 279 A ASP 280 n 232 ASP 280 A LYS 281 n 233 LYS 281 A ILE 282 n 234 ILE 282 A LEU 283 n 235 LEU 283 A LYS 284 n 236 LYS 284 A CYS 285 n 237 CYS 285 A LYS 286 n 238 LYS 286 A LEU 287 n 239 LEU 287 A ASN 288 n 240 ASN 288 A LEU 289 n 241 LEU 289 A PRO 290 n 242 PRO 290 A PRO 291 n 243 PRO 291 A TYR 292 n 244 TYR 292 A LEU 293 n 245 LEU 293 A THR 294 n 246 THR 294 A GLN 295 n 247 GLN 295 A GLU 296 n 248 GLU 296 A ALA 297 n 249 ALA 297 A ARG 298 n 250 ARG 298 A ASP 299 n 251 ASP 299 A LEU 300 n 252 LEU 300 A LEU 301 n 253 LEU 301 A LYS 302 n 254 LYS 302 A LYS 303 n 255 LYS 303 A LEU 304 n 256 LEU 304 A LEU 305 n 257 LEU 305 A LYS 306 n 258 LYS 306 A ARG 307 n 259 ARG 307 A ASN 308 n 260 ASN 308 A ALA 309 n 261 ALA 309 A ALA 310 n 262 ALA 310 A SER 311 n 263 SER 311 A ARG 312 n 264 ARG 312 A LEU 313 n 265 LEU 313 A GLY 314 n 266 GLY 314 A ALA 315 n 267 ALA 315 A GLY 316 n 268 GLY 316 A PRO 317 n 269 PRO 317 A GLY 318 n 270 GLY 318 A ASP 319 n 271 ASP 319 A ALA 320 n 272 ALA 320 A GLY 321 n 273 GLY 321 A GLU 322 n 274 GLU 322 A VAL 323 n 275 VAL 323 A GLN 324 n 276 GLN 324 A ALA 325 n 277 ALA 325 A HIS 326 n 278 HIS 326 A PRO 327 n 279 PRO 327 A PHE 328 n 280 PHE 328 A PHE 329 n 281 PHE 329 A ARG 330 n 282 ARG 330 A HIS 331 n 283 HIS 331 A ILE 332 n 284 ILE 332 A ASN 333 n 285 ASN 333 A TRP 334 n 286 TRP 334 A GLU 335 n 287 GLU 335 A GLU 336 n 288 GLU 336 A LEU 337 n 289 LEU 337 A LEU 338 n 290 LEU 338 A ALA 339 n 291 ALA 339 A ARG 340 n 292 ARG 340 A LYS 341 n 293 LYS 341 A VAL 342 n 294 VAL 342 A ALA 343 n 295 GLU 343 A PRO 344 n 296 PRO 344 A PRO 345 n 297 PRO 345 A PHE 346 n 298 PHE 346 A LYS 347 n 299 LYS 347 A PRO 348 n 300 PRO 348 A LEU 349 n 301 LEU 349 A LEU 350 n 302 LEU 350 A GLN 351 n 303 GLN 351 A SER 352 n 304 SER 352 A 0.1176 -0.0858 0.0422 0.3563 -0.0111 0.0238 -0.0061 0.0023 0.0262 0.0144 -0.0016 -0.0373 -0.0180 0.0196 0.0077 0.0755 -0.0026 0.0015 0.0900 0.0019 0.0072 refined -12.0547 20.0145 4.8641 X-RAY DIFFRACTION A 62 A 352 X-RAY DIFFRACTION 1 author_and_software_defined_assembly PISA 1 monomeric A CYS 217 A SG CYS 169 1_555 A ZN 402 C ZN ZN 1_555 A HIS 222 A ND1 HIS 174 1_555 102.8 A CYS 217 A SG CYS 169 1_555 A ZN 402 C ZN ZN 1_555 A HIS 228 A ND1 HIS 180 1_555 109.1 A HIS 222 A ND1 HIS 174 1_555 A ZN 402 C ZN ZN 1_555 A HIS 228 A ND1 HIS 180 1_555 122.3 A CYS 217 A SG CYS 169 1_555 A ZN 402 C ZN ZN 1_555 A CYS 231 A SG CYS 183 1_555 109.6 A HIS 222 A ND1 HIS 174 1_555 A ZN 402 C ZN ZN 1_555 A CYS 231 A SG CYS 183 1_555 104.2 A HIS 228 A ND1 HIS 180 1_555 A ZN 402 C ZN ZN 1_555 A CYS 231 A SG CYS 183 1_555 108.4 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N LEU 74 A N LEU 26 A O VAL 82 A O VAL 34 A N PHE 83 A N PHE 35 A O MET 99 A O MET 51 A N ALA 98 A N ALA 50 A O LEU 149 A O LEU 101 A O ILE 148 A O ILE 100 A N ILE 136 A N ILE 88 A N MET 202 A N MET 154 A O LYS 210 A O LYS 162 1 A CG ARG 64 A CG ARG 16 1 Y 1 A CD ARG 64 A CD ARG 16 1 Y 1 A NE ARG 64 A NE ARG 16 1 Y 1 A CZ ARG 64 A CZ ARG 16 1 Y 1 A NH1 ARG 64 A NH1 ARG 16 1 Y 1 A NH2 ARG 64 A NH2 ARG 16 1 Y 1 A CG LYS 277 A CG LYS 229 1 Y 1 A CD LYS 277 A CD LYS 229 1 Y 1 A CE LYS 277 A CE LYS 229 1 Y 1 A NZ LYS 277 A NZ LYS 229 1 Y 1 A CG GLU 343 A CG GLU 295 1 Y 1 A CD GLU 343 A CD GLU 295 1 Y 1 A OE1 GLU 343 A OE1 GLU 295 1 Y 1 A OE2 GLU 343 A OE2 GLU 295 1 Y 1 A GLY 49 A GLY 1 1 Y 1 A ALA 50 A ALA 2 1 Y 1 A MET 51 A MET 3 1 Y 1 A SER 52 A SER 4 1 Y 1 A GLU 53 A GLU 5 1 Y 1 A THR 54 A THR 6 1 Y 1 A SER 55 A SER 7 1 Y 1 A VAL 56 A VAL 8 1 Y 1 A ASN 57 A ASN 9 1 Y 1 A ARG 58 A ARG 10 1 Y 1 A GLY 59 A GLY 11 1 Y 1 A PRO 60 A PRO 12 1 Y 1 A GLU 61 A GLU 13 1 Y 1 A A NH1 O ARG HOH 298 561 2.15 1 A THR 141 -117.70 -162.88 1 A ARG 194 83.64 -56.35 1 A ASN 248 -148.56 -158.16 1 A ASP 319 45.25 -127.80 142.450 56.1127 27.320 -0.7100 -0.0000 -0.0000 -0.7100 0.0000 1.4200 0.9330 0.9090 0.2467 0.2065 0.2085 2.1000 46.4800 1033 20329 5.1000 95.7800 1.000 1.000 10.0310 0.1210 RANDOM 1 THROUGHOUT 0.000 MOLECULAR REPLACEMENT 0.1900 0.8000 0.8000 1.2000 3A62 MAXIMUM LIKELIHOOD MASK 2.1000 46.4800 61 2395 29 0 2305 0.009 0.019 2388 1.236 1.988 3221 5.126 5.000 290 34.264 23.500 100 16.826 15.000 434 22.223 15.000 14 0.085 0.200 349 0.009 0.021 1771 9.326 3.000 2388 0.000 5.000 35 19.468 5.000 2403 0.2710 0.2030 2.1540 79 1411 1490 20 97.9600 2.100 50.000 4L3L 20480 0.121 1.817 1 12.200 8.900 96.300 0.430 2.100 2.180 2073 1.143 1 9.400 100.000 0.326 2.180 2.260 2052 1.336 1 9.400 100.000 0.256 2.260 2.370 2072 1.489 1 9.400 100.000 0.200 2.370 2.490 2109 1.607 1 9.400 100.000 0.166 2.490 2.650 2086 1.700 1 9.400 100.000 0.134 2.650 2.850 2101 1.814 1 9.300 99.800 0.113 2.850 3.140 2095 1.993 1 9.100 99.100 0.108 3.140 3.590 2071 2.515 1 8.400 96.900 0.096 3.590 4.520 1845 2.800 1 7.300 84.900 0.080 4.520 50.000 1976 2.330 1 7.300 84.500 data reduction Zbyszek Otwinowski hkl@hkl-xray.com http://www.hkl-xray.com/ DENZO package data scaling Zbyszek Otwinowski hkl@hkl-xray.com http://www.hkl-xray.com/ SCALEPACK package refinement Garib N. Murshudov garib@ysbl.york.ac.uk Fortran_77 http://www.ccp4.ac.uk/dist/html/refmac5.html REFMAC program 5.7.0029 data extraction PDB deposit@deposit.rcsb.org April 22, 2011 C++ http://sw-tools.pdb.org/apps/PDB_EXTRACT/ PDB_EXTRACT package 3.11 data collection HKL-2000 Crystal structures of human p70S6K1 kinase domain (Zinc anomalous) 1 N N 2 N N 3 N N 4 N N biological unit is monomer A ARG 64 A ARG 16 HELX_P A GLU 66 A GLU 18 5 1 3 A LYS 104 A LYS 56 HELX_P A ASN 110 A ASN 62 1 2 7 A ASN 110 A ASN 62 HELX_P A VAL 127 A VAL 79 1 3 18 A GLU 156 A GLU 108 HELX_P A GLY 165 A GLY 117 1 4 10 A MET 168 A MET 120 HELX_P A LYS 189 A LYS 141 1 5 22 A LYS 197 A LYS 149 HELX_P A GLU 199 A GLU 151 5 6 3 A ALA 238 A ALA 190 HELX_P A ARG 244 A ARG 196 1 7 7 A ARG 249 A ARG 201 HELX_P A GLY 266 A GLY 218 1 8 18 A ASN 274 A ASN 226 HELX_P A CYS 285 A CYS 237 1 9 12 A THR 294 A THR 246 HELX_P A LEU 305 A LEU 257 1 10 12 A ASN 308 A ASN 260 HELX_P A ARG 312 A ARG 264 5 11 5 A GLY 318 A GLY 270 HELX_P A ALA 325 A ALA 277 1 12 8 A HIS 326 A HIS 278 HELX_P A ARG 330 A ARG 282 5 13 5 A ASN 333 A ASN 285 HELX_P A ALA 339 A ALA 291 1 14 7 A LYS 347 A LYS 299 HELX_P A GLN 351 A GLN 303 5 15 5 metalc 2.583 A CYS 217 A SG CYS 169 1_555 A ZN 402 C ZN ZN 1_555 metalc 2.569 A HIS 222 A ND1 HIS 174 1_555 A ZN 402 C ZN ZN 1_555 metalc 2.479 A HIS 228 A ND1 HIS 180 1_555 A ZN 402 C ZN ZN 1_555 metalc 2.579 A CYS 231 A SG CYS 183 1_555 A ZN 402 C ZN ZN 1_555 TRANSFERASE Protein kinase, TRANSFERASE Q7Z721_HUMAN UNP 1 75 Q7Z721 SETSVNRGPEKIRPECFELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEVKHPF IVDLIYAFQTGGKLYLILEYLSGGELFMQLEREGIFMEDTACFYLAEISMALGHLHQKGIIYRDLKPENIMLNHQGHVKL TDFGLCKESIHDGTVTHTFCGTIEYMAPEILMRSGHNRAVDWWSLGALMYDMLTGAPPFTGENRKKTIDKILKCKLNLPP YLTQEARDLLKKLLKRNAASRLGAGPGDAGEVQAHPFFRHINWEELLARKVEPPFKPLLQS 75 375 4L3L 52 352 Q7Z721 A 1 4 304 1 expression tag GLY 49 4L3L A Q7Z721 UNP 1 1 expression tag ALA 50 4L3L A Q7Z721 UNP 2 1 expression tag MET 51 4L3L A Q7Z721 UNP 3 5 2 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A PHE 68 A PHE 20 A GLY 77 A GLY 29 A GLY 80 A GLY 32 A LYS 87 A LYS 39 A ILE 96 A ILE 48 A LYS 103 A LYS 55 A LYS 144 A LYS 96 A GLU 150 A GLU 102 A LEU 135 A LEU 87 A GLN 140 A GLN 92 A ILE 201 A ILE 153 A LEU 203 A LEU 155 A VAL 209 A VAL 161 A LEU 211 A LEU 163 BINDING SITE FOR RESIDUE 5FI A 401 A 5FI 401 Software 14 BINDING SITE FOR RESIDUE ZN A 402 A ZN 402 Software 4 A GLY 75 A GLY 27 14 1_555 A LYS 76 A LYS 28 14 1_555 A GLY 77 A GLY 29 14 1_555 A TYR 79 A TYR 31 14 1_555 A GLY 80 A GLY 32 14 1_555 A LYS 81 A LYS 33 14 1_555 A ALA 98 A ALA 50 14 1_555 A LYS 100 A LYS 52 14 1_555 A LEU 102 A LEU 54 14 1_555 A GLU 150 A GLU 102 14 1_555 A LEU 152 A LEU 104 14 1_555 A MET 202 A MET 154 14 1_555 A LYS 218 A LYS 170 14 1_555 A HOH 518 D HOH 14 1_555 A CYS 217 A CYS 169 4 1_555 A HIS 222 A HIS 174 4 1_555 A HIS 228 A HIS 180 4 1_555 A CYS 231 A CYS 183 4 1_555 92 P 41 21 2