0.012173 0.007028 0.000000 0.000000 0.014057 0.000000 0.000000 0.000000 0.025308 0.00000 0.00000 0.00000 Ostrem, J.M. Peters, U. Sos, M.L. Wells, J.A. Shokat, K.M. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 6 90.00 90.00 120.00 82.146 82.146 39.513 156693 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C10 H15 N5 O11 P2 443.201 n GUANOSINE-5'-DIPHOSPHATE RNA linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking Mg 2 24.305 MAGNESIUM ION non-polymer Na 1 22.990 SODIUM ION non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N P N 89 N O N 90 N O N 91 N O N 92 N O N 93 N P N 94 N O N 95 N O N 96 N O N 97 N C N 98 R C N 99 N O N 100 S C N 101 N O N 102 R C N 103 N O N 104 R C Y 105 N N Y 106 N C Y 107 N N Y 108 N C N 109 N C N 110 N O N 111 N N N 112 N C N 113 N N N 114 N N Y 115 N C N 116 N H N 117 N H N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N H N 128 N H N 129 N H N 130 N H N 131 N N N 132 S C N 133 N C N 134 N O N 135 N C N 136 N C N 137 N C N 138 N O N 139 N N N 140 N O N 141 N H N 142 N H N 143 N H N 144 N H N 145 N H N 146 N H N 147 N H N 148 N H N 149 N H N 150 N H N 151 N N N 152 S C N 153 N C N 154 N O N 155 N C N 156 N C N 157 N C N 158 N O N 159 N O N 160 N O N 161 N H N 162 N H N 163 N H N 164 N H N 165 N H N 166 N H N 167 N H N 168 N H N 169 N H N 170 N N N 171 N C N 172 N C N 173 N O N 174 N O N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N N N 181 S C N 182 N C N 183 N O N 184 N C Y 185 N C Y 186 N N Y 187 N C Y 188 N C Y 189 N N N 190 N O N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N O N 202 N H N 203 N H N 204 N N N 205 S C N 206 N C N 207 N O N 208 S C N 209 N C N 210 N C N 211 N C N 212 N O N 213 N H N 214 N H N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N N N 227 S C N 228 N C N 229 N O N 230 N C N 231 N C N 232 N C N 233 N C N 234 N O N 235 N H N 236 N H N 237 N H N 238 N H N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N N N 249 S C N 250 N C N 251 N O N 252 N C N 253 N C N 254 N C N 255 N C N 256 N N N 257 N O N 258 N H N 259 N H N 260 N H N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N N N 274 S C N 275 N C N 276 N O N 277 N C N 278 N C N 279 N S N 280 N C N 281 N O N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N H N 292 N H N 293 N MG N 294 N NA N 295 N N N 296 S C N 297 N C N 298 N O N 299 N C Y 300 N C Y 301 N C Y 302 N C Y 303 N C Y 304 N C Y 305 N C N 306 N O N 307 N H N 308 N H N 309 N H N 310 N H N 311 N H N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N N N 319 S C N 320 N C N 321 N O N 322 N C N 323 N C N 324 N C N 325 N O N 326 N H N 327 N H N 328 N H N 329 N H N 330 N H N 331 N H N 332 N H N 333 N H N 334 N H N 335 N N N 336 S C N 337 N C N 338 N O N 339 N C N 340 N O N 341 N O N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N N N 350 S C N 351 N C N 352 N O N 353 R C N 354 N O N 355 N C N 356 N O N 357 N H N 358 N H N 359 N H N 360 N H N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N N N 367 S C N 368 N C N 369 N O N 370 N C Y 371 N C Y 372 N C Y 373 N C Y 374 N C Y 375 N C Y 376 N C N 377 N O N 378 N O N 379 N H N 380 N H N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N N N 391 S C N 392 N C N 393 N O N 394 N C N 395 N C N 396 N C N 397 N O N 398 N H N 399 N H N 400 N H N 401 N H N 402 N H N 403 N H N 404 N H N 405 N H N 406 N H N 407 N H N 408 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N doub N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N doub N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing Y 112 N sing Y 113 N sing Y 114 N doub N 115 N sing Y 116 N sing N 117 N sing Y 118 N doub N 119 N doub N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N doub N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N doub N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N doub N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N doub N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N doub N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N doub N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N doub N 181 N sing N 182 N sing N 183 N sing N 184 N sing Y 185 N sing Y 186 N doub Y 187 N doub N 188 N sing Y 189 N sing N 190 N sing Y 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N doub N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N doub N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N doub N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N doub N 289 N sing N 290 N sing N 291 N sing N 292 N sing Y 293 N doub Y 294 N sing Y 295 N sing N 296 N sing Y 297 N doub N 298 N sing Y 299 N doub N 300 N sing Y 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N doub N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N doub N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N doub N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N doub N 358 N sing N 359 N sing N 360 N sing N 361 N sing Y 362 N doub Y 363 N sing Y 364 N sing N 365 N sing Y 366 N doub N 367 N sing Y 368 N doub N 369 N sing Y 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N doub N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing UK Nature NATUAS 0006 0028-0836 503 548 551 10.1038/nature12796 24256730 K-Ras(G12C) inhibitors allosterically control GTP affinity and effector interactions. 2013 10.2210/pdb4l8g/pdb pdb_00004l8g 100 1 CCD 2010-04-25 ADSC QUANTUM 315r 1.00 degrees, 10.0 sec, detector distance 200.15 mm \w scans Double crystal, Si(111) SINGLE WAVELENGTH M x-ray 1 0.9999 1.0 0.042 156693 8.2.2 ALS 0.9999 SYNCHROTRON ALS BEAMLINE 8.2.2 19374.902 GTPase KRas UNP residues 1-169 1 man polymer 443.201 GUANOSINE-5'-DIPHOSPHATE 1 syn non-polymer 24.305 MAGNESIUM ION 1 syn non-polymer 22.990 SODIUM ION 1 syn non-polymer 18.015 water 127 nat water K-Ras 2, Ki-Ras, c-K-ras, c-Ki-ras, GTPase KRas, KRas-4B no no GMTEYKLVVVGACGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL CVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTL VREIRKHKEK GMTEYKLVVVGACGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL CVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTL VREIRKHKEK A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human sample KRAS, KRAS isoform 2B, KRAS2, RASK2 9606 Homo sapiens 469008 Escherichia coli BL21(DE3) plasmid pJexpress411 1 1.99 38.08 VAPOR DIFFUSION, HANGING DROP 7.5 21% PEG3350, 0.2M CaCl2, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K 293 software chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model pdbx_struct_conn_angle struct_conn struct_ref_seq_dif struct_site repository Initial release Database references Refinement description Data collection Database references Derived calculations Refinement description 1 0 2013-11-27 1 1 2013-12-18 1 2 2017-11-15 1 3 2023-09-20 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id RCSB Y RCSB 2013-06-17 REL REL GDP GUANOSINE-5'-DIPHOSPHATE MG MAGNESIUM ION NA SODIUM ION HOH water THE SEQUENCE IN THE STRUCTURE REPRESENTS ISOFORM 2B OF GTPASE KRAS. THIS ISOFORM DIFFERS FROM THE CANONICAL SEQUENCE AS FOLLOW: 151-153 (RVE TO GVD) AND 165-169 (QYRLK TO KHKEK) 3GFT PDB ENTRY 3GFT PDB experimental model GDP 220 2 GDP GDP 201 A MG 200 3 MG MG 202 A NA 205 4 NA NA 203 A HOH 1 5 HOH HOH 301 A HOH 2 5 HOH HOH 302 A HOH 3 5 HOH HOH 303 A HOH 4 5 HOH HOH 304 A HOH 5 5 HOH HOH 305 A HOH 6 5 HOH HOH 306 A HOH 7 5 HOH HOH 307 A HOH 8 5 HOH HOH 308 A HOH 9 5 HOH HOH 309 A HOH 10 5 HOH HOH 310 A HOH 11 5 HOH HOH 311 A HOH 12 5 HOH HOH 312 A HOH 13 5 HOH HOH 313 A HOH 14 5 HOH HOH 314 A HOH 15 5 HOH HOH 315 A HOH 16 5 HOH HOH 316 A HOH 17 5 HOH HOH 317 A HOH 18 5 HOH HOH 318 A HOH 19 5 HOH HOH 319 A HOH 20 5 HOH HOH 320 A HOH 21 5 HOH HOH 321 A HOH 22 5 HOH HOH 322 A HOH 23 5 HOH HOH 323 A HOH 24 5 HOH HOH 324 A HOH 25 5 HOH HOH 325 A HOH 26 5 HOH HOH 326 A HOH 27 5 HOH HOH 327 A HOH 28 5 HOH HOH 328 A HOH 29 5 HOH HOH 329 A HOH 30 5 HOH HOH 330 A HOH 31 5 HOH HOH 331 A HOH 32 5 HOH HOH 332 A HOH 33 5 HOH HOH 333 A HOH 34 5 HOH HOH 334 A HOH 35 5 HOH HOH 335 A HOH 36 5 HOH HOH 336 A HOH 37 5 HOH HOH 337 A HOH 38 5 HOH HOH 338 A HOH 39 5 HOH HOH 339 A HOH 40 5 HOH HOH 340 A HOH 41 5 HOH HOH 341 A HOH 42 5 HOH HOH 342 A HOH 43 5 HOH HOH 343 A HOH 44 5 HOH HOH 344 A HOH 45 5 HOH HOH 345 A HOH 46 5 HOH HOH 346 A HOH 47 5 HOH HOH 347 A HOH 48 5 HOH HOH 348 A HOH 49 5 HOH HOH 349 A HOH 50 5 HOH HOH 350 A HOH 51 5 HOH HOH 351 A HOH 52 5 HOH HOH 352 A HOH 53 5 HOH HOH 353 A HOH 54 5 HOH HOH 354 A HOH 55 5 HOH HOH 355 A HOH 56 5 HOH HOH 356 A HOH 57 5 HOH HOH 357 A HOH 58 5 HOH HOH 358 A HOH 59 5 HOH HOH 359 A HOH 60 5 HOH HOH 360 A HOH 61 5 HOH HOH 361 A HOH 62 5 HOH HOH 362 A HOH 63 5 HOH HOH 363 A HOH 64 5 HOH HOH 364 A HOH 65 5 HOH HOH 365 A HOH 66 5 HOH HOH 366 A HOH 67 5 HOH HOH 367 A HOH 68 5 HOH HOH 368 A HOH 69 5 HOH HOH 369 A HOH 70 5 HOH HOH 370 A HOH 71 5 HOH HOH 371 A HOH 72 5 HOH HOH 372 A HOH 73 5 HOH HOH 373 A HOH 74 5 HOH HOH 374 A HOH 75 5 HOH HOH 375 A HOH 76 5 HOH HOH 376 A HOH 77 5 HOH HOH 377 A HOH 78 5 HOH HOH 378 A HOH 79 5 HOH HOH 379 A HOH 80 5 HOH HOH 380 A HOH 81 5 HOH HOH 381 A HOH 82 5 HOH HOH 382 A HOH 83 5 HOH HOH 383 A HOH 84 5 HOH HOH 384 A HOH 85 5 HOH HOH 385 A HOH 86 5 HOH HOH 386 A HOH 87 5 HOH HOH 387 A HOH 88 5 HOH HOH 388 A HOH 89 5 HOH HOH 389 A HOH 90 5 HOH HOH 390 A HOH 91 5 HOH HOH 391 A HOH 92 5 HOH HOH 392 A HOH 93 5 HOH HOH 393 A HOH 94 5 HOH HOH 394 A HOH 95 5 HOH HOH 395 A HOH 96 5 HOH HOH 396 A HOH 97 5 HOH HOH 397 A HOH 98 5 HOH HOH 398 A HOH 99 5 HOH HOH 399 A HOH 100 5 HOH HOH 400 A HOH 101 5 HOH HOH 401 A HOH 102 5 HOH HOH 402 A HOH 103 5 HOH HOH 403 A HOH 104 5 HOH HOH 404 A HOH 105 5 HOH HOH 405 A HOH 106 5 HOH HOH 406 A HOH 107 5 HOH HOH 407 A HOH 108 5 HOH HOH 408 A HOH 109 5 HOH HOH 409 A HOH 110 5 HOH HOH 410 A HOH 111 5 HOH HOH 411 A HOH 112 5 HOH HOH 412 A HOH 113 5 HOH HOH 413 A HOH 114 5 HOH HOH 414 A HOH 115 5 HOH HOH 415 A HOH 116 5 HOH HOH 416 A HOH 117 5 HOH HOH 417 A HOH 118 5 HOH HOH 418 A HOH 119 5 HOH HOH 419 A HOH 120 5 HOH HOH 420 A HOH 121 5 HOH HOH 421 A HOH 122 5 HOH HOH 422 A HOH 123 5 HOH HOH 423 A HOH 124 5 HOH HOH 424 A HOH 125 5 HOH HOH 425 A HOH 126 5 HOH HOH 426 A HOH 127 5 HOH HOH 427 A 2.500 2.500 19.730 19.730 n 1 0 A MET 1 n 2 MET 1 A THR 2 n 3 THR 2 A GLU 3 n 4 GLU 3 A TYR 4 n 5 TYR 4 A LYS 5 n 6 LYS 5 A LEU 6 n 7 LEU 6 A VAL 7 n 8 VAL 7 A VAL 8 n 9 VAL 8 A VAL 9 n 10 VAL 9 A GLY 10 n 11 GLY 10 A ALA 11 n 12 ALA 11 A CYS 12 n 13 CYS 12 A GLY 13 n 14 GLY 13 A VAL 14 n 15 VAL 14 A GLY 15 n 16 GLY 15 A LYS 16 n 17 LYS 16 A SER 17 n 18 SER 17 A ALA 18 n 19 ALA 18 A LEU 19 n 20 LEU 19 A THR 20 n 21 THR 20 A ILE 21 n 22 ILE 21 A GLN 22 n 23 GLN 22 A LEU 23 n 24 LEU 23 A ILE 24 n 25 ILE 24 A GLN 25 n 26 GLN 25 A ASN 26 n 27 ASN 26 A HIS 27 n 28 HIS 27 A PHE 28 n 29 PHE 28 A VAL 29 n 30 VAL 29 A ASP 30 n 31 ASP 30 A GLU 31 n 32 GLU 31 A TYR 32 n 33 TYR 32 A ASP 33 n 34 ASP 33 A PRO 34 n 35 PRO 34 A THR 35 n 36 THR 35 A ILE 36 n 37 ILE 36 A GLU 37 n 38 GLU 37 A ASP 38 n 39 ASP 38 A SER 39 n 40 SER 39 A TYR 40 n 41 TYR 40 A ARG 41 n 42 ARG 41 A LYS 42 n 43 LYS 42 A GLN 43 n 44 GLN 43 A VAL 44 n 45 VAL 44 A VAL 45 n 46 VAL 45 A ILE 46 n 47 ILE 46 A ASP 47 n 48 ASP 47 A GLY 48 n 49 GLY 48 A GLU 49 n 50 GLU 49 A THR 50 n 51 THR 50 A CYS 51 n 52 CYS 51 A LEU 52 n 53 LEU 52 A LEU 53 n 54 LEU 53 A ASP 54 n 55 ASP 54 A ILE 55 n 56 ILE 55 A LEU 56 n 57 LEU 56 A ASP 57 n 58 ASP 57 A THR 58 n 59 THR 58 A ALA 59 n 60 ALA 59 A n 61 60 A n 62 61 A n 63 62 A n 64 63 A n 65 64 A n 66 65 A n 67 66 A n 68 67 A n 69 68 A n 70 69 A GLN 70 n 71 GLN 70 A TYR 71 n 72 TYR 71 A MET 72 n 73 MET 72 A ARG 73 n 74 ARG 73 A THR 74 n 75 THR 74 A GLY 75 n 76 GLY 75 A GLU 76 n 77 GLU 76 A GLY 77 n 78 GLY 77 A PHE 78 n 79 PHE 78 A LEU 79 n 80 LEU 79 A CYS 80 n 81 CYS 80 A VAL 81 n 82 VAL 81 A PHE 82 n 83 PHE 82 A ALA 83 n 84 ALA 83 A ILE 84 n 85 ILE 84 A ASN 85 n 86 ASN 85 A ASN 86 n 87 ASN 86 A THR 87 n 88 THR 87 A LYS 88 n 89 LYS 88 A SER 89 n 90 SER 89 A PHE 90 n 91 PHE 90 A GLU 91 n 92 GLU 91 A ASP 92 n 93 ASP 92 A ILE 93 n 94 ILE 93 A HIS 94 n 95 HIS 94 A HIS 95 n 96 HIS 95 A TYR 96 n 97 TYR 96 A ARG 97 n 98 ARG 97 A GLU 98 n 99 GLU 98 A GLN 99 n 100 GLN 99 A ILE 100 n 101 ILE 100 A LYS 101 n 102 LYS 101 A ARG 102 n 103 ARG 102 A VAL 103 n 104 VAL 103 A LYS 104 n 105 LYS 104 A ASP 105 n 106 ASP 105 A SER 106 n 107 SER 106 A GLU 107 n 108 GLU 107 A ASP 108 n 109 ASP 108 A VAL 109 n 110 VAL 109 A PRO 110 n 111 PRO 110 A MET 111 n 112 MET 111 A VAL 112 n 113 VAL 112 A LEU 113 n 114 LEU 113 A VAL 114 n 115 VAL 114 A GLY 115 n 116 GLY 115 A ASN 116 n 117 ASN 116 A LYS 117 n 118 LYS 117 A CYS 118 n 119 CYS 118 A ASP 119 n 120 ASP 119 A LEU 120 n 121 LEU 120 A PRO 121 n 122 PRO 121 A SER 122 n 123 SER 122 A ARG 123 n 124 ARG 123 A THR 124 n 125 THR 124 A VAL 125 n 126 VAL 125 A ASP 126 n 127 ASP 126 A THR 127 n 128 THR 127 A LYS 128 n 129 LYS 128 A GLN 129 n 130 GLN 129 A ALA 130 n 131 ALA 130 A GLN 131 n 132 GLN 131 A ASP 132 n 133 ASP 132 A LEU 133 n 134 LEU 133 A ALA 134 n 135 ALA 134 A ARG 135 n 136 ARG 135 A SER 136 n 137 SER 136 A TYR 137 n 138 TYR 137 A GLY 138 n 139 GLY 138 A ILE 139 n 140 ILE 139 A PRO 140 n 141 PRO 140 A PHE 141 n 142 PHE 141 A ILE 142 n 143 ILE 142 A GLU 143 n 144 GLU 143 A THR 144 n 145 THR 144 A SER 145 n 146 SER 145 A ALA 146 n 147 ALA 146 A LYS 147 n 148 LYS 147 A THR 148 n 149 THR 148 A ARG 149 n 150 ARG 149 A GLN 150 n 151 GLN 150 A GLY 151 n 152 GLY 151 A VAL 152 n 153 VAL 152 A ASP 153 n 154 ASP 153 A ASP 154 n 155 ASP 154 A ALA 155 n 156 ALA 155 A PHE 156 n 157 PHE 156 A TYR 157 n 158 TYR 157 A THR 158 n 159 THR 158 A LEU 159 n 160 LEU 159 A VAL 160 n 161 VAL 160 A ARG 161 n 162 ARG 161 A GLU 162 n 163 GLU 162 A ILE 163 n 164 ILE 163 A ARG 164 n 165 ARG 164 A LYS 165 n 166 LYS 165 A HIS 166 n 167 HIS 166 A LYS 167 n 168 LYS 167 A n 169 168 A n 170 169 A 2.4554 0.5117 0.6970 3.2694 -0.1535 2.4983 -0.0272 -0.2280 0.2155 0.0698 -0.0778 0.4534 -0.4734 -0.2777 -0.0960 0.2427 0.0382 -0.0170 0.1438 -0.0354 0.1735 refined 28.8602 -1.1701 285.3982 X-RAY DIFFRACTION 4.5141 3.1270 -0.4512 4.6911 -2.2423 7.6256 0.0594 -0.0485 0.1406 0.3424 0.0069 0.2091 -0.6260 -0.1772 -0.0558 0.2524 -0.0033 0.0115 0.1249 -0.0315 0.1415 refined 38.2792 -1.9574 291.5018 X-RAY DIFFRACTION 2.7011 -2.3998 2.0078 6.6957 -5.2300 3.9037 -0.7108 -0.3373 0.8916 0.6916 0.1318 -0.1792 -0.8265 -0.5458 0.4116 0.4537 0.0407 -0.1100 0.2644 -0.0569 0.4926 refined 24.6735 5.6612 284.1776 X-RAY DIFFRACTION 7.5217 -0.6311 -0.7677 5.0672 0.9635 2.5613 -0.1078 -0.3706 0.1072 0.4405 -0.0807 0.6930 -0.0408 -0.4121 0.1653 0.2243 -0.0013 0.0087 0.2347 -0.0006 0.2664 refined 23.6301 -8.2370 285.7590 X-RAY DIFFRACTION 5.1194 -2.3363 -3.4773 1.9330 1.4055 2.3080 -0.1359 0.2098 -0.5542 0.0937 -0.0542 0.3896 0.0644 -0.1640 0.2100 0.1834 -0.0097 -0.0132 0.1707 0.0080 0.2342 refined 27.3840 -17.3977 282.6017 X-RAY DIFFRACTION 6.1346 0.2576 0.4571 2.6608 0.2440 1.8822 -0.0369 0.1045 -0.1463 -0.3373 0.0541 0.1926 0.0043 -0.0401 0.0493 0.2139 -0.0156 -0.0521 0.1302 0.0137 0.1633 refined 31.8670 -11.5026 276.7556 X-RAY DIFFRACTION 5.0180 1.4705 -0.5355 5.5213 -0.5154 5.8519 -0.0652 1.0046 0.3277 -0.9669 0.1769 0.6217 0.2745 0.0774 -0.0864 0.3838 -0.0177 -0.1326 0.2790 0.0102 0.2767 refined 29.0257 -16.7879 270.0073 X-RAY DIFFRACTION 5.7043 3.8416 5.8752 4.5853 4.5643 6.2109 0.1826 0.1630 -0.2856 -0.3335 0.1462 -0.0797 -0.1185 0.1467 -0.2163 0.2306 -0.0134 -0.0367 0.1482 0.0136 0.1555 refined 35.2360 -4.4516 275.0367 X-RAY DIFFRACTION 7.1669 0.0665 1.1639 4.2494 -1.2609 5.8487 -0.1843 0.3274 0.4427 -0.4710 0.0931 0.7433 -0.0889 -0.3534 0.1081 0.2901 0.0044 -0.0879 0.1876 -0.0052 0.3482 refined 22.4764 -0.2580 275.2120 X-RAY DIFFRACTION A 0 A 0 X-RAY DIFFRACTION 1 chain 'A' and (resid 1 through 25 ) A 0 A 0 X-RAY DIFFRACTION 2 chain 'A' and (resid 26 through 37 ) A 0 A 0 X-RAY DIFFRACTION 3 chain 'A' and (resid 38 through 57 ) A 0 A 0 X-RAY DIFFRACTION 4 chain 'A' and (resid 58 through 83 ) A 0 A 0 X-RAY DIFFRACTION 5 chain 'A' and (resid 84 through 104 ) A 0 A 0 X-RAY DIFFRACTION 6 chain 'A' and (resid 105 through 126 ) A 0 A 0 X-RAY DIFFRACTION 7 chain 'A' and (resid 127 through 137 ) A 0 A 0 X-RAY DIFFRACTION 8 chain 'A' and (resid 138 through 151 ) A 0 A 0 X-RAY DIFFRACTION 9 chain 'A' and (resid 152 through 167 ) author_and_software_defined_assembly PISA 1 monomeric A SER 17 A OG SER 18 1_555 A MG 202 C MG MG 1_555 A GDP 201 B O1B GDP 1_555 89.9 A SER 17 A OG SER 18 1_555 A MG 202 C MG MG 1_555 A HOH 305 E O HOH 1_555 89.8 A GDP 201 B O1B GDP 1_555 A MG 202 C MG MG 1_555 A HOH 305 E O HOH 1_555 169.9 A SER 17 A OG SER 18 1_555 A MG 202 C MG MG 1_555 A HOH 309 E O HOH 1_555 81.1 A GDP 201 B O1B GDP 1_555 A MG 202 C MG MG 1_555 A HOH 309 E O HOH 1_555 94.1 A HOH 305 E O HOH 1_555 A MG 202 C MG MG 1_555 A HOH 309 E O HOH 1_555 95.9 A SER 17 A OG SER 18 1_555 A MG 202 C MG MG 1_555 A HOH 314 E O HOH 1_555 174.4 A GDP 201 B O1B GDP 1_555 A MG 202 C MG MG 1_555 A HOH 314 E O HOH 1_555 90.7 A HOH 305 E O HOH 1_555 A MG 202 C MG MG 1_555 A HOH 314 E O HOH 1_555 90.7 A HOH 309 E O HOH 1_555 A MG 202 C MG MG 1_555 A HOH 314 E O HOH 1_555 93.3 A SER 17 A OG SER 18 1_555 A MG 202 C MG MG 1_555 A HOH 349 E O HOH 1_555 93.3 A GDP 201 B O1B GDP 1_555 A MG 202 C MG MG 1_555 A HOH 349 E O HOH 1_555 85.2 A HOH 305 E O HOH 1_555 A MG 202 C MG MG 1_555 A HOH 349 E O HOH 1_555 84.7 A HOH 309 E O HOH 1_555 A MG 202 C MG MG 1_555 A HOH 349 E O HOH 1_555 174.3 A HOH 314 E O HOH 1_555 A MG 202 C MG MG 1_555 A HOH 349 E O HOH 1_555 92.3 A HOH 325 E O HOH 1_555 A NA 203 D NA NA 1_555 A HOH 330 E O HOH 1_555 74.1 A HOH 325 E O HOH 1_555 A NA 203 D NA NA 1_555 A HOH 369 E O HOH 1_555 75.5 A HOH 330 E O HOH 1_555 A NA 203 D NA NA 1_555 A HOH 369 E O HOH 1_555 127.2 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N ILE 46 A N ILE 47 A O GLU 49 A O GLU 50 A O ASP 54 A O ASP 55 A N LEU 6 A N LEU 7 A N VAL 9 A N VAL 10 A O VAL 81 A O VAL 82 A N PHE 82 A N PHE 83 A O ASN 116 A O ASN 117 A N LEU 113 A N LEU 114 A O ILE 142 A O ILE 143 1 A NA 203 D NA 1 A HOH 327 E HOH 1 A HOH 369 E HOH 1 A CG GLN 70 A CG GLN 71 1 Y 1 A CD GLN 70 A CD GLN 71 1 Y 1 A OE1 GLN 70 A OE1 GLN 71 1 Y 1 A NE2 GLN 70 A NE2 GLN 71 1 Y 1 A CG TYR 71 A CG TYR 72 1 Y 1 A CD1 TYR 71 A CD1 TYR 72 1 Y 1 A CD2 TYR 71 A CD2 TYR 72 1 Y 1 A CE1 TYR 71 A CE1 TYR 72 1 Y 1 A CE2 TYR 71 A CE2 TYR 72 1 Y 1 A CZ TYR 71 A CZ TYR 72 1 Y 1 A OH TYR 71 A OH TYR 72 1 Y 1 A CG LYS 128 A CG LYS 129 1 Y 1 A CD LYS 128 A CD LYS 129 1 Y 1 A CE LYS 128 A CE LYS 129 1 Y 1 A NZ LYS 128 A NZ LYS 129 1 Y 1 A GLY 0 A GLY 1 1 Y 1 A GLY 60 A GLY 61 1 Y 1 A GLN 61 A GLN 62 1 Y 1 A GLU 62 A GLU 63 1 Y 1 A GLU 63 A GLU 64 1 Y 1 A TYR 64 A TYR 65 1 Y 1 A SER 65 A SER 66 1 Y 1 A ALA 66 A ALA 67 1 Y 1 A MET 67 A MET 68 1 Y 1 A ARG 68 A ARG 69 1 Y 1 A ASP 69 A ASP 70 1 Y 1 A GLU 168 A GLU 169 1 Y 1 A LYS 169 A LYS 170 1 Y 1 A A HD22 O ASN HOH 86 411 1.47 1 A A SG O CYS HOH 12 426 2.05 1 A A O O HOH HOH 331 359 2.06 1 A A OE2 O GLU HOH 49 422 2.10 1 A A O O HOH HOH 357 409 2.10 1 A A O O HOH HOH 346 372 2.15 1 A A O O HOH HOH 333 425 2.10 1_555 6_554 1 A A OE1 O GLU HOH 49 427 2.18 1_555 6_554 1 A LYS 117 70.79 35.23 1 A ARG 149 89.43 -6.95 94.890 31.8471 12.720 0.1804 0.1484 0.1510 1.5210 19.7310 1998 23540 8.4900 99.9300 1.000 0.310 0.8902 0.1300 1 1.360 MOLECULAR REPLACEMENT 17.7300 0.9000 1.1100 PDB ENTRY 3GFT ML FLAT BULK SOLVENT MODEL 1.5210 19.7310 127 1395 30 0 1238 0.019 1304 1.868 1774 0.110 205 0.011 225 15.771 492 0.2324 0.1879 1.5586 139 1484 1623 14 100.0000 0.2154 0.1758 1.6007 142 1544 1686 14 100.0000 0.2242 0.1694 1.6478 139 1540 1679 14 100.0000 0.1968 0.1635 1.7009 141 1532 1673 14 100.0000 0.1765 0.1516 1.7617 138 1522 1660 14 100.0000 0.1783 0.1484 1.8322 145 1525 1670 14 100.0000 0.1732 0.1463 1.9155 141 1546 1687 14 100.0000 0.1814 0.1400 2.0164 141 1526 1667 14 100.0000 0.2035 0.1447 2.1426 147 1536 1683 14 100.0000 0.1683 0.1426 2.3078 144 1539 1683 14 100.0000 0.1774 0.1397 2.5396 146 1553 1699 14 100.0000 0.1826 0.1512 2.9061 143 1548 1691 14 100.0000 0.1783 0.1374 3.6576 141 1559 1700 14 100.0000 0.1695 0.1535 19.7325 151 1588 1739 14 99.0000 1.52 20.00 4L8G 23541 0 -3 0.042 0.042 1 38.873 6.7 99.9 0.349 1.52 1.55 5.000 0.349 1 6.2 100.0 data reduction Zbyszek Otwinowski hkl@hkl-xray.com http://www.hkl-xray.com/ DENZO package data scaling Zbyszek Otwinowski hkl@hkl-xray.com http://www.hkl-xray.com/ SCALEPACK package phasing Randy J. Read cimr-phaser@lists.cam.ac.uk Wed Mar 17 00:11:11 2010 http://www-structmed.cimr.cam.ac.uk/phaser/ PHASER program 2.2.4 refinement Paul D. Adams PDAdams@lbl.gov C++ http://www.phenix-online.org/ PHENIX package dev_1402 data extraction PDB deposit@deposit.rcsb.org April 22, 2011 C++ http://sw-tools.pdb.org/apps/PDB_EXTRACT/ PDB_EXTRACT package 3.11 data collection BOS data reduction HKL-2000 data scaling HKL-2000 Crystal Structure of K-Ras G12C, GDP-bound 1 N N 2 N N 3 N N 4 N N 5 N N A GLY 15 A GLY 16 HELX_P A ASN 26 A ASN 27 1 1 12 A ASN 86 A ASN 87 HELX_P A ASP 92 A ASP 93 1 2 7 A ASP 92 A ASP 93 HELX_P A ASP 105 A ASP 106 1 3 14 A ASP 126 A ASP 127 HELX_P A GLY 138 A GLY 139 1 4 13 A GLY 151 A GLY 152 HELX_P A LYS 167 A LYS 168 1 5 17 metalc 2.230 A SER 17 A OG SER 18 1_555 A MG 202 C MG MG 1_555 metalc 2.125 A GDP 201 B O1B GDP 1_555 A MG 202 C MG MG 1_555 metalc 2.256 A MG 202 C MG MG 1_555 A HOH 305 E O HOH 1_555 metalc 2.228 A MG 202 C MG MG 1_555 A HOH 309 E O HOH 1_555 metalc 2.169 A MG 202 C MG MG 1_555 A HOH 314 E O HOH 1_555 metalc 2.267 A MG 202 C MG MG 1_555 A HOH 349 E O HOH 1_555 metalc 2.513 A NA 203 D NA NA 1_555 A HOH 325 E O HOH 1_555 metalc 2.452 A NA 203 D NA NA 1_555 A HOH 330 E O HOH 1_555 metalc 2.405 A NA 203 D NA NA 1_555 A HOH 369 E O HOH 1_555 SIGNALING PROTEIN GTPase, activating mutant, SIGNALING PROTEIN RASK_HUMAN UNP 1 1 P01116 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC VFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQRVEDAFYTLV REIRQYRLK 1 169 4L8G 1 169 P01116 A 1 2 170 1 expression tag GLY 0 4L8G A P01116 UNP 1 1 GLY variant CYS 12 4L8G A P01116 UNP 12 13 1 ARG SEE REMARK 999 GLY 151 4L8G A P01116 UNP 151 152 1 GLU SEE REMARK 999 ASP 153 4L8G A P01116 UNP 153 154 1 GLN SEE REMARK 999 LYS 165 4L8G A P01116 UNP 165 166 1 TYR SEE REMARK 999 HIS 166 4L8G A P01116 UNP 166 167 1 ARG SEE REMARK 999 LYS 167 4L8G A P01116 UNP 167 168 1 LEU SEE REMARK 999 GLU 168 4L8G A P01116 UNP 168 169 6 anti-parallel parallel parallel parallel parallel A ASP 38 A ASP 39 A ILE 46 A ILE 47 A GLU 49 A GLU 50 A ASP 57 A ASP 58 A GLU 3 A GLU 4 A GLY 10 A GLY 11 A GLY 77 A GLY 78 A ALA 83 A ALA 84 A MET 111 A MET 112 A ASN 116 A ASN 117 A PHE 141 A PHE 142 A GLU 143 A GLU 144 BINDING SITE FOR RESIDUE GDP A 201 A GDP 201 Software 26 BINDING SITE FOR RESIDUE MG A 202 A MG 202 Software 6 BINDING SITE FOR RESIDUE NA A 203 A NA 203 Software 9 A GLY 13 A GLY 14 26 1_555 A VAL 14 A VAL 15 26 1_555 A GLY 15 A GLY 16 26 1_555 A LYS 16 A LYS 17 26 1_555 A SER 17 A SER 18 26 1_555 A ALA 18 A ALA 19 26 1_555 A PHE 28 A PHE 29 26 1_555 A VAL 29 A VAL 30 26 1_555 A ASP 30 A ASP 31 26 1_555 A TYR 32 A TYR 33 26 1_555 A ASN 116 A ASN 117 26 1_555 A LYS 117 A LYS 118 26 1_555 A ASP 119 A ASP 120 26 1_555 A LEU 120 A LEU 121 26 1_555 A SER 145 A SER 146 26 1_555 A ALA 146 A ALA 147 26 1_555 A LYS 147 A LYS 148 26 1_555 A MG 202 C MG 26 1_555 A HOH 308 E HOH 26 1_555 A HOH 312 E HOH 26 1_555 A HOH 313 E HOH 26 1_555 A HOH 314 E HOH 26 1_555 A HOH 343 E HOH 26 1_555 A HOH 349 E HOH 26 1_555 A HOH 352 E HOH 26 1_555 A HOH 367 E HOH 26 1_555 A SER 17 A SER 18 6 1_555 A GDP 201 B GDP 6 1_555 A HOH 305 E HOH 6 1_555 A HOH 309 E HOH 6 1_555 A HOH 314 E HOH 6 1_555 A HOH 349 E HOH 6 1_555 A HOH 325 E HOH 9 2_545 A HOH 325 E HOH 9 3_655 A HOH 325 E HOH 9 1_555 A HOH 330 E HOH 9 3_655 A HOH 330 E HOH 9 1_555 A HOH 330 E HOH 9 2_545 A HOH 369 E HOH 9 3_655 A HOH 369 E HOH 9 2_545 A HOH 369 E HOH 9 1_555 173 P 63